Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069592.1| glucose-6-phosphatase [Bos taurus]. 540 e-153
Alignment gi|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus]. 306 2e-83
Alignment gi|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphat... 306 2e-83
Alignment gi|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus]. 178 7e-45
>ref|NP_001069592.1| glucose-6-phosphatase [Bos taurus].
Length = 357
Score = 540 bits (1390), Expect = e-153
Identities = 262/280 (93%), Positives = 268/280 (95%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWVLDTDYYSNTS PLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78 ILFGQRPYWWVLDTDYYSNTSAPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
RGKKKPTY FRCLNV+LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGKKKPTYRFRCLNVMLWLGFWVVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
IQSIYNASLKKYFLIT FLFSFAIGFYLLLK LGVDL WTLEKAKRRCERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITCFLFSFAIGFYLLLKWLGVDLLWTLEKAKRRCERPEWVHIDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKWFPFRLSCIVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWFPFRLSCIVASLVLLHLFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
IELIFYVLSFCKSAAVPLASVSLIPYCL+ LGQP+KKT+
Sbjct: 318 IELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQPNKKTV 357
>ref|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus].
Length = 355
Score = 306 bits (785), Expect = 2e-83
Identities = 145/280 (51%), Positives = 190/280 (67%), Gaps = 2/280 (0%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS
Sbjct: 74 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 133
Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
+ + K R LW FW +Q+NVC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVILGVIGGVLVAEIF 193
Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
+ I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C P+W+HIDT
Sbjct: 194 EYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCANPDWIHIDT 253
Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
TPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL L + +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQLYHFIKIP 313
Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
+ E +FYVLSFCKSA++PL V+LIPYC+ + KK
Sbjct: 314 TDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353
>ref|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphatase-related
protein-like [Bos taurus].
Length = 355
Score = 306 bits (785), Expect = 2e-83
Identities = 145/280 (51%), Positives = 190/280 (67%), Gaps = 2/280 (0%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS
Sbjct: 74 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 133
Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
+ + K R LW FW +Q+NVC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVILGVIGGVLVAEIF 193
Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
+ I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C P+W+HIDT
Sbjct: 194 EYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCANPDWIHIDT 253
Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
TPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL L + +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQLYHFIKIP 313
Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
+ E +FYVLSFCKSA++PL V+LIPYC+ + KK
Sbjct: 314 TDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353
>ref|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus].
Length = 346
Score = 178 bits (452), Expect = 7e-45
Identities = 108/265 (40%), Positives = 151/265 (56%)
Frame = +3
Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++T+ S +
Sbjct: 75 LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAVSSQM 133
Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
+ R + VI L + T L V LSR++L AHFPHQV+AG+++G AV
Sbjct: 134 ATRAHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AVLGWLMTP 188
Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
Q L Y L + L A Y L LG+DLSW++ A + CERPEWVH+D+ PF
Sbjct: 189 QVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSINLASKWCERPEWVHLDSRPF 248
Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
ASL ++ G GLG+AL+S Y Q + L + +L C+V ++ LL + L P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLVCLVLAMGLLGPLNWLGYPPQI 306
Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
L FY+ +F K P ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,697,624
Number of extensions: 1139966
Number of successful extensions: 4021
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4008
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,240,222
Effective search space: 3944541494
Effective search space used: 3944541494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familia... 535 e-152
Alignment gi|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiari... 533 e-152
Alignment gi|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, ca... 310 1e-84
Alignment gi|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase cat... 184 1e-46
>ref|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familiaris].
Length = 357
Score = 535 bits (1378), Expect = e-152
Identities = 255/280 (91%), Positives = 266/280 (95%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78 ILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCERPEWVHIDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASLLKNVGTLFGLG+ALNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH FDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGVALNSSMYRESCKGKLSKWFPFRLSCIVVSLILLHLFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
ELIFY LSFCKSAAVPLASVSLIPYCL+R QPDKK+L
Sbjct: 318 TELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357
>ref|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiaris].
Length = 357
Score = 533 bits (1374), Expect = e-152
Identities = 254/280 (90%), Positives = 265/280 (94%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78 ILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCERPEWVHIDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASLLKNVGTLFGLG+ LNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH FDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGVTLNSSMYRESCKGKLSKWFPFRLSCIVVSLILLHLFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
ELIFY LSFCKSAAVPLASVSLIPYCL+R QPDKK+L
Sbjct: 318 TELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357
>ref|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, catalytic, related
[Canis familiaris].
Length = 371
Score = 310 bits (795), Expect = 1e-84
Identities = 148/281 (52%), Positives = 191/281 (67%), Gaps = 3/281 (1%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS
Sbjct: 89 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 148
Query: 318 I---RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAET 488
K TY R LW FW +Q++VC+SR+++A HFPHQV+ GV G+ VAE
Sbjct: 149 TVSRMDKSLTTYLHRLTWSFLWSLFWLIQISVCISRVFIATHFPHQVILGVFGGMLVAEA 208
Query: 489 FRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHID 668
F H I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C P+W+HID
Sbjct: 209 FEHTPGIQTASLSTYLKTNLFLFLFALGFYLLLRLLDIDLLWSVPIAKKWCANPDWIHID 268
Query: 669 TTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKP 848
TTPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C ASL+ L + +K
Sbjct: 269 TTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYKLSFRLLCAGASLMTLQLYHFIKI 328
Query: 849 PSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
P+ E +FYVLSFCKSA++PL V+LIPYC+ + +KK
Sbjct: 329 PTHAEHLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSEKK 369
>ref|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase catalytic subunit 3
[Canis familiaris].
Length = 346
Score = 184 bits (467), Expect = 1e-46
Identities = 109/265 (41%), Positives = 154/265 (58%)
Frame = +3
Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
LFG RPYWWV ++ YYS+ + QFP +CETGPGSPSGH M T + ++T+ S +
Sbjct: 75 LFGDRPYWWVHESGYYSHAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAISSQV 133
Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
+ R + VI L + T L V LSRI+L AHFPHQV+AG+++G AV
Sbjct: 134 ASRAHS----RWVRVIPSLAYCTFLLAVGLSRIFLLAHFPHQVLAGLITG-AVLGWLMAP 188
Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
+ L Y L + L A Y +L LG+DLSW++ A + CERPEWVH+D+ PF
Sbjct: 189 RVPMERELSFYGLTSLALLLGASLIYWILVTLGLDLSWSIRLASKWCERPEWVHVDSRPF 248
Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
ASL ++ G GLG+AL+S Y Q + +L +++C+V ++ LL D L P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYTQVRRAQLG--HGQKIACLVLAMGLLGPLDWLGHPPQI 306
Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
L FY+ +F K P ++L+P+
Sbjct: 307 SL-FYIFNFLKFTLWPCLVLALVPW 330
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,527,425
Number of extensions: 1167587
Number of successful extensions: 3858
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3851
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 276
Effective length of database: 15,374,224
Effective search space: 4243285824
Effective search space used: 4243285824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000142.1| glucose-6-phosphatase [Homo sapiens]. 522 e-148
Alignment gi|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens]. 301 6e-82
Alignment gi|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens]. 176 3e-44
Alignment gi|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapi... 96 6e-20
>ref|NP_000142.1| glucose-6-phosphatase [Homo sapiens].
Length = 357
Score = 522 bits (1345), Expect = e-148
Identities = 252/280 (90%), Positives = 263/280 (93%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
+GK KPTY FRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAV ETF H
Sbjct: 138 FQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVTETFSH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
I SIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CE+PEWVHIDTTP
Sbjct: 198 IHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKAQRWCEQPEWVHIDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKW PFRLS IVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIVASLVLLHVFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
+EL+FYVLSFCKSA VPLASVS+IPYCL++ LGQP KK+L
Sbjct: 318 VELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL 357
>ref|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens].
Length = 355
Score = 301 bits (772), Expect = 6e-82
Identities = 145/281 (51%), Positives = 190/281 (67%), Gaps = 2/281 (0%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG + V+YVMVT+ALS
Sbjct: 74 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGASCVWYVMVTAALSH 133
Query: 315 IIRGKKKPTYGFRCLN-VILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
+ G K + L LW FW +Q++VC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVCGMDKFSITLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVILGVIGGMLVAEAF 193
Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
H I ASL Y FLF FA+GFYLLL+ L +DL W++ AK+ C P+W+HIDT
Sbjct: 194 EHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSVPIAKKWCANPDWIHIDT 253
Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
TPFA L++N+G LFGLG A+NS M+ C+G + FRL C + SL +L + L+ P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLCALTSLTILQLYHFLQIP 313
Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 974
+ E +FYVLSFCKSA++PL V+ IPY + + Q KK+
Sbjct: 314 THEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQSGKKS 354
>ref|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens].
Length = 346
Score = 176 bits (447), Expect = 3e-44
Identities = 104/267 (38%), Positives = 152/267 (56%)
Frame = +3
Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++T+ S +
Sbjct: 75 LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTALSSQV 133
Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
+ + R + V+ L + T L V LSRI++ AHFPHQV+AG+++G AV
Sbjct: 134 ATRARS----RWVRVMPSLAYCTFLLAVGLSRIFILAHFPHQVLAGLITG-AVLGWLMTP 188
Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
+ L Y L L Y L LG+DLSW++ A + CERPEW+H+D+ PF
Sbjct: 189 RVPMERELSFYGLTALALMLGTSLIYWTLFTLGLDLSWSISLAFKWCERPEWIHVDSRPF 248
Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
ASL ++ G GLG+AL+S Y Q + +L +++C+V ++ LL D L P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAQLGN--GQKIACLVLAMGLLGPLDWLGHPPQI 306
Query: 861 ELIFYVLSFCKSAAVPLASVSLIPYCL 941
L FY+ +F K P ++L+P+ +
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPWAV 332
>ref|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapiens].
Length = 154
Score = 95.9 bits (237), Expect = 6e-20
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS 314
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG + V+YVMVT+ALS
Sbjct: 74 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGASCVWYVMVTAALS 132
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,753,758
Number of extensions: 1155196
Number of successful extensions: 3853
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,868,908
Effective search space: 4118687516
Effective search space used: 4118687516
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032087.2| glucose-6-phosphatase [Mus musculus]. 507 e-144
Alignment gi|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus]. 307 9e-84
Alignment gi|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus]. 176 4e-44
>ref|NP_032087.2| glucose-6-phosphatase [Mus musculus].
Length = 357
Score = 507 bits (1305), Expect = e-144
Identities = 242/280 (86%), Positives = 257/280 (91%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWVLDTDYYSN+SVP+IKQFPVTCETGPGSPSGHAMG AGVYYVMVTS L+I
Sbjct: 78 ILFGQRPYWWVLDTDYYSNSSVPIIKQFPVTCETGPGSPSGHAMGAAGVYYVMVTSTLAI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
RGKKKPTYGFRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF H
Sbjct: 138 FRGKKKPTYGFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFSH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
I+ IYNASL+KY LIT FLF FA+GFYLLLKGLGVDL WTLEKAKR CERPEWVH+DTTP
Sbjct: 198 IRGIYNASLRKYCLITIFLFGFALGFYLLLKGLGVDLLWTLEKAKRWCERPEWVHLDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASL KN+GTL GLGLALNSSMYR+ CKG+LSK PFR +CIVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLFKNLGTLLGLGLALNSSMYRKSCKGELSKLLPFRFACIVASLVLLHLFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
+ELIFY+LSFCKSA VP ASVSLIPYCL+R LGQ KK+L
Sbjct: 318 VELIFYILSFCKSATVPFASVSLIPYCLARILGQTHKKSL 357
>ref|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus].
Length = 355
Score = 307 bits (787), Expect = 9e-84
Identities = 143/281 (50%), Positives = 195/281 (69%), Gaps = 2/281 (0%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
ILFG RPYWW+ +T+ Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS
Sbjct: 74 ILFGHRPYWWIQETEIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSY 133
Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
I R ++ R LW FW +Q++VC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TISRMEESSVTLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVILGVIGGMLVAEAF 193
Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
H ++ ASL Y FLF FA+GFYLLL+ G+DL W++ AK+ C P+W+HID+
Sbjct: 194 EHTPGVHMASLSVYLKTNVFLFLFALGFYLLLRLFGIDLLWSVPIAKKWCANPDWIHIDS 253
Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
TPFA L++N+G LFGLG A+NS M+ + C+G+ FRL C + SL + + +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCQGENGTKPSFRLLCALTSLTTMQLYRFIKIP 313
Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 974
+ E +FY+LSFCKSA++PL V+LIPYC+ + DKKT
Sbjct: 314 THAEPLFYLLSFCKSASIPLMVVALIPYCVHMLMRPGDKKT 354
>ref|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus].
Length = 346
Score = 176 bits (445), Expect = 4e-44
Identities = 103/265 (38%), Positives = 151/265 (56%)
Frame = +3
Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
LFG RP+WWV ++ Y + T + I QFP +CETGPGSPSGH M T + ++T+ S +
Sbjct: 75 LFGDRPFWWVHESGYSTQTPIQ-IHQFPSSCETGPGSPSGHCMITGAALWPVMTAISSQV 133
Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
+ + + + VI L + T L V LSR++L AHFPHQV+ G++ G A+
Sbjct: 134 ASRSRSPW----VRVIPGLAYCTFLLAVGLSRVFLLAHFPHQVLGGLIVGAALGWLMSPR 189
Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
+ L Y L L A Y L LG+DLSW++ A + CERPEWVH+D+ PF
Sbjct: 190 VPM-ERELSFYGLTALALMLGASLMYWTLFTLGLDLSWSINLASKWCERPEWVHMDSRPF 248
Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
ASL ++ G+ GLG+AL++ Y Q + L +++C V ++ LL F + L P QI
Sbjct: 249 ASLSRDSGSALGLGIALHTPCYAQIRRAHLGN--GQKIACFVLAMGLLVFLEWLGYPPQI 306
Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
L FY+ +F K P ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,082,865
Number of extensions: 969271
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 278
Effective length of database: 12,523,851
Effective search space: 3481630578
Effective search space used: 3481630578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106916.1| glucose-6-phosphatase [Sus scrofa]. 570 e-163
Alignment gi|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus... 179 2e-45
Alignment gi|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus... 95 8e-20
>ref|NP_001106916.1| glucose-6-phosphatase [Sus scrofa].
Length = 357
Score = 570 bits (1470), Expect = e-163
Identities = 279/280 (99%), Positives = 279/280 (99%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSG AMGTAGVYYVMVTSALSI
Sbjct: 78 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGLAMGTAGVYYVMVTSALSI 137
Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197
Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 257
Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 317
Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL
Sbjct: 318 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 357
>ref|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus scrofa].
Length = 346
Score = 179 bits (455), Expect = 2e-45
Identities = 108/265 (40%), Positives = 152/265 (57%)
Frame = +3
Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
LFG RP+WWV ++ YYS + QFP +CETGPGSPSGH M T + ++T+ S +
Sbjct: 75 LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAISSQM 133
Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
+ R + VI L + T L V LSR++L AHFPHQV+AG+++G AV
Sbjct: 134 ATRTHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AVLGWLMTP 188
Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
+ L Y L + L A Y L LG+DLSW++ A + CERPEWVH+D+ PF
Sbjct: 189 RVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSISLASKWCERPEWVHLDSRPF 248
Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
ASL ++ G GLG+AL+S Y Q + L + +L+C+V ++ LL D L P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLACLVLAMGLLGPLDWLGYPPQI 306
Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
L FY+ +F K P ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330
>ref|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus scrofa].
Length = 154
Score = 94.7 bits (234), Expect = 8e-20
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +3
Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSAL 311
ILFG RPYWWV +T Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+AL
Sbjct: 74 ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAAL 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,519,478
Number of extensions: 733283
Number of successful extensions: 2436
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 280
Effective length of database: 8,829,335
Effective search space: 2472213800
Effective search space used: 2472213800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001913
(1143 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10 196 2e-47
gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32 117 1e-23
>gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10
Length = 101
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 466 caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 40
Query: 526 agaagtattttctcattaccttcttcctgttcagttttg 564
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 agaagtattttctcattaccttcttcctgttcagttttg 1
>gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32
Length = 110
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 79 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccagg 137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccagg 52
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,900,521
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 1143
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1122
Effective length of database: 2,808,413,156
Effective search space: 3151039561032
Effective search space used: 3151039561032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)