Animal-Genome cDNA 20110601C-001913


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069592.1| glucose-6-phosphatase [Bos taurus].               540   e-153
Alignment   gi|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus].             306   2e-83
Alignment   gi|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphat...   306   2e-83
Alignment   gi|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus].                178   7e-45

>ref|NP_001069592.1| glucose-6-phosphatase [Bos taurus].
          Length = 357

 Score =  540 bits (1390), Expect = e-153
 Identities = 262/280 (93%), Positives = 268/280 (95%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWVLDTDYYSNTS PLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78  ILFGQRPYWWVLDTDYYSNTSAPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
            RGKKKPTY FRCLNV+LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGKKKPTYRFRCLNVMLWLGFWVVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           IQSIYNASLKKYFLIT FLFSFAIGFYLLLK LGVDL WTLEKAKRRCERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITCFLFSFAIGFYLLLKWLGVDLLWTLEKAKRRCERPEWVHIDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKWFPFRLSCIVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWFPFRLSCIVASLVLLHLFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
           IELIFYVLSFCKSAAVPLASVSLIPYCL+  LGQP+KKT+
Sbjct: 318 IELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQPNKKTV 357


>ref|NP_001178975.1| glucose-6-phosphatase 2 [Bos taurus].
          Length = 355

 Score =  306 bits (785), Expect = 2e-83
 Identities = 145/280 (51%), Positives = 190/280 (67%), Gaps = 2/280 (0%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS 
Sbjct: 74  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 133

Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
            + +  K      R     LW  FW +Q+NVC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVILGVIGGVLVAEIF 193

Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
            +   I  ASL  Y     FLF FA+GFYLLL+ L +DL W++  AK+ C  P+W+HIDT
Sbjct: 194 EYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCANPDWIHIDT 253

Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
           TPFA L++N+G LFGLG A+NS M+ + C+G+      FRL C + SL  L  +  +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQLYHFIKIP 313

Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
           +  E +FYVLSFCKSA++PL  V+LIPYC+   +    KK
Sbjct: 314 TDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353


>ref|XP_002685355.1| PREDICTED: islet-specific glucose-6-phosphatase-related
           protein-like [Bos taurus].
          Length = 355

 Score =  306 bits (785), Expect = 2e-83
 Identities = 145/280 (51%), Positives = 190/280 (67%), Gaps = 2/280 (0%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS 
Sbjct: 74  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 133

Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
            + +  K      R     LW  FW +Q+NVC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVSQMDKSFITLHRLTWSFLWSLFWLIQINVCISRVFIATHFPHQVILGVIGGVLVAEIF 193

Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
            +   I  ASL  Y     FLF FA+GFYLLL+ L +DL W++  AK+ C  P+W+HIDT
Sbjct: 194 EYTPGIQTASLSVYLKTNLFLFLFALGFYLLLRHLDIDLLWSVPIAKKWCANPDWIHIDT 253

Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
           TPFA L++N+G LFGLG A+NS M+ + C+G+      FRL C + SL  L  +  +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYGLSFRLLCALVSLTTLQLYHFIKIP 313

Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
           +  E +FYVLSFCKSA++PL  V+LIPYC+   +    KK
Sbjct: 314 TDTEYLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSAKK 353


>ref|NP_899208.2| glucose-6-phosphatase 3 [Bos taurus].
          Length = 346

 Score =  178 bits (452), Expect = 7e-45
 Identities = 108/265 (40%), Positives = 151/265 (56%)
 Frame = +3

Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
           LFG RP+WWV ++ YYS      + QFP +CETGPGSPSGH M T    + ++T+  S +
Sbjct: 75  LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAVSSQM 133

Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
             +       R + VI  L + T  L V LSR++L AHFPHQV+AG+++G AV       
Sbjct: 134 ATRAHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AVLGWLMTP 188

Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
           Q      L  Y L +  L   A   Y  L  LG+DLSW++  A + CERPEWVH+D+ PF
Sbjct: 189 QVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSINLASKWCERPEWVHLDSRPF 248

Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
           ASL ++ G   GLG+AL+S  Y Q  +  L   +  +L C+V ++ LL   + L  P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLVCLVLAMGLLGPLNWLGYPPQI 306

Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
            L FY+ +F K    P   ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,697,624
Number of extensions: 1139966
Number of successful extensions: 4021
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4008
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,240,222
Effective search space: 3944541494
Effective search space used: 3944541494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familia...   535   e-152
Alignment   gi|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiari...   533   e-152
Alignment   gi|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, ca...   310   1e-84
Alignment   gi|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase cat...   184   1e-46

>ref|XP_855553.1| PREDICTED: glucose-6-phosphatase [Canis familiaris].
          Length = 357

 Score =  535 bits (1378), Expect = e-152
 Identities = 255/280 (91%), Positives = 266/280 (95%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78  ILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
            RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCERPEWVHIDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASLLKNVGTLFGLG+ALNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH FDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGVALNSSMYRESCKGKLSKWFPFRLSCIVVSLILLHLFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
            ELIFY LSFCKSAAVPLASVSLIPYCL+R   QPDKK+L
Sbjct: 318 TELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357


>ref|NP_001002993.1| glucose-6-phosphatase [Canis lupus familiaris].
          Length = 357

 Score =  533 bits (1374), Expect = e-152
 Identities = 254/280 (90%), Positives = 265/280 (94%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWV+DTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78  ILFGQRPYWWVMDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
            RG+K+PTY FRCLN++LWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 FRGRKRPTYRFRCLNILLWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKARRWCERPEWVHIDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASLLKNVGTLFGLG+ LNSSMYR+ CKGKLSKWFPFRLSCIV SL+LLH FDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGVTLNSSMYRESCKGKLSKWFPFRLSCIVVSLILLHLFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
            ELIFY LSFCKSAAVPLASVSLIPYCL+R   QPDKK+L
Sbjct: 318 TELIFYTLSFCKSAAVPLASVSLIPYCLARVFDQPDKKSL 357


>ref|XP_545511.2| PREDICTED: similar to glucose-6-phosphatase, catalytic, related
           [Canis familiaris].
          Length = 371

 Score =  310 bits (795), Expect = 1e-84
 Identities = 148/281 (52%), Positives = 191/281 (67%), Gaps = 3/281 (1%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS 
Sbjct: 89  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSH 148

Query: 318 I---RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAET 488
                 K   TY  R     LW  FW +Q++VC+SR+++A HFPHQV+ GV  G+ VAE 
Sbjct: 149 TVSRMDKSLTTYLHRLTWSFLWSLFWLIQISVCISRVFIATHFPHQVILGVFGGMLVAEA 208

Query: 489 FRHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHID 668
           F H   I  ASL  Y     FLF FA+GFYLLL+ L +DL W++  AK+ C  P+W+HID
Sbjct: 209 FEHTPGIQTASLSTYLKTNLFLFLFALGFYLLLRLLDIDLLWSVPIAKKWCANPDWIHID 268

Query: 669 TTPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKP 848
           TTPFA L++N+G LFGLG A+NS M+ + C+G+      FRL C  ASL+ L  +  +K 
Sbjct: 269 TTPFAGLVRNLGVLFGLGFAINSEMFLRSCRGENGYKLSFRLLCAGASLMTLQLYHFIKI 328

Query: 849 PSQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKK 971
           P+  E +FYVLSFCKSA++PL  V+LIPYC+   +   +KK
Sbjct: 329 PTHAEHLFYVLSFCKSASIPLTVVALIPYCIHMLMKPSEKK 369


>ref|XP_548065.2| PREDICTED: similar to glucose-6-phosphatase catalytic subunit 3
           [Canis familiaris].
          Length = 346

 Score =  184 bits (467), Expect = 1e-46
 Identities = 109/265 (41%), Positives = 154/265 (58%)
 Frame = +3

Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
           LFG RPYWWV ++ YYS+     + QFP +CETGPGSPSGH M T    + ++T+  S +
Sbjct: 75  LFGDRPYWWVHESGYYSHAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAISSQV 133

Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
             +       R + VI  L + T  L V LSRI+L AHFPHQV+AG+++G AV       
Sbjct: 134 ASRAHS----RWVRVIPSLAYCTFLLAVGLSRIFLLAHFPHQVLAGLITG-AVLGWLMAP 188

Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
           +      L  Y L +  L   A   Y +L  LG+DLSW++  A + CERPEWVH+D+ PF
Sbjct: 189 RVPMERELSFYGLTSLALLLGASLIYWILVTLGLDLSWSIRLASKWCERPEWVHVDSRPF 248

Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
           ASL ++ G   GLG+AL+S  Y Q  + +L      +++C+V ++ LL   D L  P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYTQVRRAQLG--HGQKIACLVLAMGLLGPLDWLGHPPQI 306

Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
            L FY+ +F K    P   ++L+P+
Sbjct: 307 SL-FYIFNFLKFTLWPCLVLALVPW 330


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,527,425
Number of extensions: 1167587
Number of successful extensions: 3858
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3851
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 276
Effective length of database: 15,374,224
Effective search space: 4243285824
Effective search space used: 4243285824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000142.1| glucose-6-phosphatase [Homo sapiens].                522   e-148
Alignment   gi|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens].    301   6e-82
Alignment   gi|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens].              176   3e-44
Alignment   gi|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapi...    96   6e-20

>ref|NP_000142.1| glucose-6-phosphatase [Homo sapiens].
          Length = 357

 Score =  522 bits (1345), Expect = e-148
 Identities = 252/280 (90%), Positives = 263/280 (93%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTS LSI
Sbjct: 78  ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSTLSI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
            +GK KPTY FRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAV ETF H
Sbjct: 138 FQGKIKPTYRFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVTETFSH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           I SIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDL WTLEKA+R CE+PEWVHIDTTP
Sbjct: 198 IHSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLLWTLEKAQRWCEQPEWVHIDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASLLKN+GTLFGLGLALNSSMYR+ CKGKLSKW PFRLS IVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLLKNLGTLFGLGLALNSSMYRESCKGKLSKWLPFRLSSIVASLVLLHVFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
           +EL+FYVLSFCKSA VPLASVS+IPYCL++ LGQP KK+L
Sbjct: 318 VELVFYVLSFCKSAVVPLASVSVIPYCLAQVLGQPHKKSL 357


>ref|NP_066999.1| glucose-6-phosphatase 2 isoform 1 [Homo sapiens].
          Length = 355

 Score =  301 bits (772), Expect = 6e-82
 Identities = 145/281 (51%), Positives = 190/281 (67%), Gaps = 2/281 (0%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG + V+YVMVT+ALS 
Sbjct: 74  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGASCVWYVMVTAALSH 133

Query: 315 IIRGKKKPTYGFRCLN-VILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
            + G  K +     L    LW  FW +Q++VC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TVCGMDKFSITLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVILGVIGGMLVAEAF 193

Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
            H   I  ASL  Y     FLF FA+GFYLLL+ L +DL W++  AK+ C  P+W+HIDT
Sbjct: 194 EHTPGIQTASLGTYLKTNLFLFLFAVGFYLLLRVLNIDLLWSVPIAKKWCANPDWIHIDT 253

Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
           TPFA L++N+G LFGLG A+NS M+   C+G  +    FRL C + SL +L  +  L+ P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLLSCRGGNNYTLSFRLLCALTSLTILQLYHFLQIP 313

Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 974
           +  E +FYVLSFCKSA++PL  V+ IPY +   + Q  KK+
Sbjct: 314 THEEHLFYVLSFCKSASIPLTVVAFIPYSVHMLMKQSGKKS 354


>ref|NP_612396.1| glucose-6-phosphatase 3 [Homo sapiens].
          Length = 346

 Score =  176 bits (447), Expect = 3e-44
 Identities = 104/267 (38%), Positives = 152/267 (56%)
 Frame = +3

Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
           LFG RP+WWV ++ YYS      + QFP +CETGPGSPSGH M T    + ++T+  S +
Sbjct: 75  LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTALSSQV 133

Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
             + +     R + V+  L + T  L V LSRI++ AHFPHQV+AG+++G AV       
Sbjct: 134 ATRARS----RWVRVMPSLAYCTFLLAVGLSRIFILAHFPHQVLAGLITG-AVLGWLMTP 188

Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
           +      L  Y L    L       Y  L  LG+DLSW++  A + CERPEW+H+D+ PF
Sbjct: 189 RVPMERELSFYGLTALALMLGTSLIYWTLFTLGLDLSWSISLAFKWCERPEWIHVDSRPF 248

Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
           ASL ++ G   GLG+AL+S  Y Q  + +L      +++C+V ++ LL   D L  P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAQLGN--GQKIACLVLAMGLLGPLDWLGHPPQI 306

Query: 861 ELIFYVLSFCKSAAVPLASVSLIPYCL 941
            L FY+ +F K    P   ++L+P+ +
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPWAV 332


>ref|NP_001075155.1| glucose-6-phosphatase 2 isoform 2 [Homo sapiens].
          Length = 154

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 48/59 (81%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS 314
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG + V+YVMVT+ALS
Sbjct: 74  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGASCVWYVMVTAALS 132


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,753,758
Number of extensions: 1155196
Number of successful extensions: 3853
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3842
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,868,908
Effective search space: 4118687516
Effective search space used: 4118687516
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032087.2| glucose-6-phosphatase [Mus musculus].                507   e-144
Alignment   gi|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus].              307   9e-84
Alignment   gi|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus].              176   4e-44

>ref|NP_032087.2| glucose-6-phosphatase [Mus musculus].
          Length = 357

 Score =  507 bits (1305), Expect = e-144
 Identities = 242/280 (86%), Positives = 257/280 (91%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWVLDTDYYSN+SVP+IKQFPVTCETGPGSPSGHAMG AGVYYVMVTS L+I
Sbjct: 78  ILFGQRPYWWVLDTDYYSNSSVPIIKQFPVTCETGPGSPSGHAMGAAGVYYVMVTSTLAI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
            RGKKKPTYGFRCLNVILWLGFW VQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF H
Sbjct: 138 FRGKKKPTYGFRCLNVILWLGFWAVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFSH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           I+ IYNASL+KY LIT FLF FA+GFYLLLKGLGVDL WTLEKAKR CERPEWVH+DTTP
Sbjct: 198 IRGIYNASLRKYCLITIFLFGFALGFYLLLKGLGVDLLWTLEKAKRWCERPEWVHLDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASL KN+GTL GLGLALNSSMYR+ CKG+LSK  PFR +CIVASLVLLH FDSLKPPSQ
Sbjct: 258 FASLFKNLGTLLGLGLALNSSMYRKSCKGELSKLLPFRFACIVASLVLLHLFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
           +ELIFY+LSFCKSA VP ASVSLIPYCL+R LGQ  KK+L
Sbjct: 318 VELIFYILSFCKSATVPFASVSLIPYCLARILGQTHKKSL 357


>ref|NP_067306.1| glucose-6-phosphatase 2 [Mus musculus].
          Length = 355

 Score =  307 bits (787), Expect = 9e-84
 Identities = 143/281 (50%), Positives = 195/281 (69%), Gaps = 2/281 (0%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALS- 314
           ILFG RPYWW+ +T+ Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+ALS 
Sbjct: 74  ILFGHRPYWWIQETEIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAALSY 133

Query: 315 -IIRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETF 491
            I R ++      R     LW  FW +Q++VC+SR+++A HFPHQV+ GV+ G+ VAE F
Sbjct: 134 TISRMEESSVTLHRLTWSFLWSVFWLIQISVCISRVFIATHFPHQVILGVIGGMLVAEAF 193

Query: 492 RHIQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDT 671
            H   ++ ASL  Y     FLF FA+GFYLLL+  G+DL W++  AK+ C  P+W+HID+
Sbjct: 194 EHTPGVHMASLSVYLKTNVFLFLFALGFYLLLRLFGIDLLWSVPIAKKWCANPDWIHIDS 253

Query: 672 TPFASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPP 851
           TPFA L++N+G LFGLG A+NS M+ + C+G+      FRL C + SL  +  +  +K P
Sbjct: 254 TPFAGLVRNLGVLFGLGFAINSEMFLRSCQGENGTKPSFRLLCALTSLTTMQLYRFIKIP 313

Query: 852 SQIELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKT 974
           +  E +FY+LSFCKSA++PL  V+LIPYC+   +   DKKT
Sbjct: 314 THAEPLFYLLSFCKSASIPLMVVALIPYCVHMLMRPGDKKT 354


>ref|NP_787949.2| glucose-6-phosphatase 3 [Mus musculus].
          Length = 346

 Score =  176 bits (445), Expect = 4e-44
 Identities = 103/265 (38%), Positives = 151/265 (56%)
 Frame = +3

Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
           LFG RP+WWV ++ Y + T +  I QFP +CETGPGSPSGH M T    + ++T+  S +
Sbjct: 75  LFGDRPFWWVHESGYSTQTPIQ-IHQFPSSCETGPGSPSGHCMITGAALWPVMTAISSQV 133

Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
             + +  +    + VI  L + T  L V LSR++L AHFPHQV+ G++ G A+       
Sbjct: 134 ASRSRSPW----VRVIPGLAYCTFLLAVGLSRVFLLAHFPHQVLGGLIVGAALGWLMSPR 189

Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
             +    L  Y L    L   A   Y  L  LG+DLSW++  A + CERPEWVH+D+ PF
Sbjct: 190 VPM-ERELSFYGLTALALMLGASLMYWTLFTLGLDLSWSINLASKWCERPEWVHMDSRPF 248

Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
           ASL ++ G+  GLG+AL++  Y Q  +  L      +++C V ++ LL F + L  P QI
Sbjct: 249 ASLSRDSGSALGLGIALHTPCYAQIRRAHLGN--GQKIACFVLAMGLLVFLEWLGYPPQI 306

Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
            L FY+ +F K    P   ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,082,865
Number of extensions: 969271
Number of successful extensions: 3135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 278
Effective length of database: 12,523,851
Effective search space: 3481630578
Effective search space used: 3481630578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001106916.1| glucose-6-phosphatase [Sus scrofa].               570   e-163
Alignment   gi|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus...   179   2e-45
Alignment   gi|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus...    95   8e-20

>ref|NP_001106916.1| glucose-6-phosphatase [Sus scrofa].
          Length = 357

 Score =  570 bits (1470), Expect = e-163
 Identities = 279/280 (99%), Positives = 279/280 (99%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSI 317
           ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSG AMGTAGVYYVMVTSALSI
Sbjct: 78  ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGLAMGTAGVYYVMVTSALSI 137

Query: 318 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 497
           IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH
Sbjct: 138 IRGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRH 197

Query: 498 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 677
           IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP
Sbjct: 198 IQSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTP 257

Query: 678 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 857
           FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ
Sbjct: 258 FASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQ 317

Query: 858 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 977
           IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL
Sbjct: 318 IELIFYVLSFCKSAAVPLASVSLIPYCLSRALGQPDKKTL 357


>ref|XP_003131402.1| PREDICTED: glucose-6-phosphatase 3-like [Sus scrofa].
          Length = 346

 Score =  179 bits (455), Expect = 2e-45
 Identities = 108/265 (40%), Positives = 152/265 (57%)
 Frame = +3

Query: 141 LFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSALSII 320
           LFG RP+WWV ++ YYS      + QFP +CETGPGSPSGH M T    + ++T+  S +
Sbjct: 75  LFGDRPFWWVHESGYYSQAPAQ-VHQFPSSCETGPGSPSGHCMITGAALWPIMTAISSQM 133

Query: 321 RGKKKPTYGFRCLNVILWLGFWTVQLNVCLSRIYLAAHFPHQVVAGVLSGIAVAETFRHI 500
             +       R + VI  L + T  L V LSR++L AHFPHQV+AG+++G AV       
Sbjct: 134 ATRTHS----RWVRVIPSLAYCTFLLAVGLSRVFLLAHFPHQVLAGLITG-AVLGWLMTP 188

Query: 501 QSIYNASLKKYFLITFFLFSFAIGFYLLLKGLGVDLSWTLEKAKRRCERPEWVHIDTTPF 680
           +      L  Y L +  L   A   Y  L  LG+DLSW++  A + CERPEWVH+D+ PF
Sbjct: 189 RVPMERELSFYGLTSLALLLGASLIYWTLFTLGLDLSWSISLASKWCERPEWVHLDSRPF 248

Query: 681 ASLLKNVGTLFGLGLALNSSMYRQGCKGKLSKWFPFRLSCIVASLVLLHFFDSLKPPSQI 860
           ASL ++ G   GLG+AL+S  Y Q  +  L   +  +L+C+V ++ LL   D L  P QI
Sbjct: 249 ASLSRDSGAALGLGIALHSPCYAQVRRAHLG--YGQKLACLVLAMGLLGPLDWLGYPPQI 306

Query: 861 ELIFYVLSFCKSAAVPLASVSLIPY 935
            L FY+ +F K    P   ++L+P+
Sbjct: 307 SL-FYIFNFLKYTLWPCLVLALVPW 330


>ref|XP_003133509.2| PREDICTED: glucose-6-phosphatase 2-like [Sus scrofa].
          Length = 154

 Score = 94.7 bits (234), Expect = 8e-20
 Identities = 41/58 (70%), Positives = 48/58 (82%)
 Frame = +3

Query: 138 ILFGQRPYWWVLDTDYYSNTSVPLIKQFPVTCETGPGSPSGHAMGTAGVYYVMVTSAL 311
           ILFG RPYWWV +T  Y N S P ++QFP TCETGPGSPSGHAMG++ V+YVMVT+AL
Sbjct: 74  ILFGHRPYWWVQETQIYPNHSSPCLEQFPTTCETGPGSPSGHAMGSSCVWYVMVTAAL 131


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,519,478
Number of extensions: 733283
Number of successful extensions: 2436
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 3
Length of query: 381
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 280
Effective length of database: 8,829,335
Effective search space: 2472213800
Effective search space used: 2472213800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001913
         (1143 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10   196   2e-47
gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32   117   1e-23

>gb|GL892101.1| Sus scrofa unplaced genomic scaffold chrU_scaffold10
          Length = 101

 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                       
Query: 466 caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  caggcattgcagttgctgagactttccgccacattcagagtatctacaacgccagcctca 40

                                                  
Query: 526 agaagtattttctcattaccttcttcctgttcagttttg 564
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  agaagtattttctcattaccttcttcctgttcagttttg 1


>gb|GL894545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold32
          Length = 110

 Score =  117 bits (59), Expect = 1e-23
 Identities = 59/59 (100%)
 Strand = Plus / Minus

                                                                      
Query: 79  ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccagg 137
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggaggagggaatgaaccttctccataactttgggatccaatcaacgcgctacctccagg 52


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,900,521
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 1143
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1122
Effective length of database: 2,808,413,156
Effective search space: 3151039561032
Effective search space used: 3151039561032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)