Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094572.1| myoD family inhibitor domain-containing prot... 494 e-139
Alignment gi|NP_001192466.1| myoD family inhibitor [Bos taurus]. 171 1e-42
Alignment gi|XP_002697282.1| PREDICTED: MyoD family inhibitor [Bos taurus]. 171 1e-42
Alignment gi|XP_001787520.1| PREDICTED: mCG127065-like [Bos taurus]. 75 2e-13
Alignment gi|XP_002697004.1| PREDICTED: mCG127065-like [Bos taurus]. 74 3e-13
>ref|NP_001094572.1| myoD family inhibitor domain-containing protein [Bos taurus].
Length = 242
Score = 494 bits (1271), Expect = e-139
Identities = 228/242 (94%), Positives = 233/242 (96%)
Frame = +2
Query: 554 MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWG 733
MSGAGEAL PGPQRGAE GGG LGAPAQEKCDKENT+R+ITQAT+SCFTHGE QDQSIWG
Sbjct: 1 MSGAGEALAPGPQRGAEAGGGRLGAPAQEKCDKENTEREITQATDSCFTHGEMQDQSIWG 60
Query: 734 NCSDDELIRTQPQRLPQLQTVVQESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLS 913
NCSDDELIRTQPQRLPQLQT QESEEEI KIKNGHPSLSNGNGIHHGAKHVSA+NRRLS
Sbjct: 61 NCSDDELIRTQPQRLPQLQTAAQESEEEISKIKNGHPSLSNGNGIHHGAKHVSAENRRLS 120
Query: 914 APVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCN 1093
APVSQKMHRKI SSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCN
Sbjct: 121 APVSQKMHRKIHSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCN 180
Query: 1094 IVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF 1273
IVLGQASCGICTSEACCCCC DE+GDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF
Sbjct: 181 IVLGQASCGICTSEACCCCCGDEVGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF 240
Query: 1274 PS 1279
PS
Sbjct: 241 PS 242
>ref|NP_001192466.1| myoD family inhibitor [Bos taurus].
Length = 247
Score = 171 bits (434), Expect = 1e-42
Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSK--VNAVFSQK 1015
P ++NG+G H ++ SA A K HRK+Q+ S+ S SKKSK + SQ
Sbjct: 99 PLVANGSG--HPSELGSARRTGNGALGGPKAHRKLQTHPSLASQGSKKSKGSTKSAASQI 156
Query: 1016 TGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCP 1186
+ EDCCVHCIL+CLFCEFLTLCN+VL A+CG C+SE CCCCC DC+ P
Sbjct: 157 PLQAQEDCCVHCILSCLFCEFLTLCNLVLDCATCGSCSSEDSCLCCCCCGSGECADCDLP 216
Query: 1187 CDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CD+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 217 CDLDCGILDACCESADCLEICMECCGLCFSS 247
>ref|XP_002697282.1| PREDICTED: MyoD family inhibitor [Bos taurus].
Length = 247
Score = 171 bits (434), Expect = 1e-42
Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSK--VNAVFSQK 1015
P ++NG+G H ++ SA A K HRK+Q+ S+ S SKKSK + SQ
Sbjct: 99 PLVANGSG--HPSELGSARRTGNGALGGPKAHRKLQTHPSLASQGSKKSKGSTKSAASQI 156
Query: 1016 TGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCP 1186
+ EDCCVHCIL+CLFCEFLTLCN+VL A+CG C+SE CCCCC DC+ P
Sbjct: 157 PLQAQEDCCVHCILSCLFCEFLTLCNLVLDCATCGSCSSEDSCLCCCCCGSGECADCDLP 216
Query: 1187 CDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CD+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 217 CDLDCGILDACCESADCLEICMECCGLCFSS 247
>ref|XP_001787520.1| PREDICTED: mCG127065-like [Bos taurus].
Length = 183
Score = 74.7 bits (182), Expect = 2e-13
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Frame = +2
Query: 767 PQRLPQ-LQTVVQESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRK 943
P LP+ L+ VQ + E K N I+ ++ D P +K+
Sbjct: 14 PGELPKSLRNYVQLTNE-----KQADQKAINAIVINSVSEFNITDGPAKETPSEKKLSES 68
Query: 944 IQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGI 1123
S S+ +K S + S + EDC IL CLFC+FL C ++L +
Sbjct: 69 SISLSSLEESQTKFSYLQTDTSVHPRDTDEDCA-SLILTCLFCQFLD-CLLMLPDTCETV 126
Query: 1124 CTSEACCCCCR-------DEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF 1273
C + CC R +DCNC CD+DC + ++C E+SDCLE+ ME IC+
Sbjct: 127 CIN-VCCPSLRYHHTSDESHSRNDCNCNCDIDCSLFESCHETSDCLELAMEISEICY 182
>ref|XP_002697004.1| PREDICTED: mCG127065-like [Bos taurus].
Length = 189
Score = 73.9 bits (180), Expect = 3e-13
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Frame = +2
Query: 896 DNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCE 1075
D P +K+ S S+ +K S + S + EDC IL CLFC+
Sbjct: 59 DGPAKETPSEKKLSESSISLSSLEESQTKFSYLQTDTSVHPRDTDEDCA-SLILTCLFCQ 117
Query: 1076 FLTLCNIVLGQASCGICTSEACCCCCR-------DEMGDDCNCPCDMDCGIMDACCESSD 1234
FL C ++L +C + CC R +DCNC CD+DC + ++C E+SD
Sbjct: 118 FLD-CLLMLPDTCETVCIN-VCCPSLRYHHTSDESHSRNDCNCNCDIDCSLFESCHETSD 175
Query: 1235 CLEICMECCGICF 1273
CLE+ ME IC+
Sbjct: 176 CLELAMEISEICY 188
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,600,990
Number of extensions: 1215381
Number of successful extensions: 6550
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6379
Number of HSP's successfully gapped: 5
Length of query: 484
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,174,046
Effective search space: 5357789388
Effective search space used: 5357789388
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854863.1| PREDICTED: similar to MyoD family inhibitor dom... 421 e-118
Alignment gi|XP_851321.1| PREDICTED: similar to MyoD family inhibitor (My... 116 5e-26
Alignment gi|XP_853636.1| PREDICTED: similar to MyoD family inhibitor dom... 65 1e-10
>ref|XP_854863.1| PREDICTED: similar to MyoD family inhibitor domain containing isoform
p40 [Canis familiaris].
Length = 573
Score = 421 bits (1082), Expect = e-118
Identities = 194/215 (90%), Positives = 201/215 (93%), Gaps = 1/215 (0%)
Frame = +2
Query: 638 EKCDKENTDRDITQATNSCFTHGEKQDQSIWGNCSDDELIRTQPQRLPQLQTVVQE-SEE 814
+KCDKEN +R ITQAT+SCF+ GE QDQ +WGNCSDDELI+TQPQRLPQL T +E SEE
Sbjct: 359 QKCDKENAERTITQATDSCFSRGEMQDQPVWGNCSDDELIQTQPQRLPQLPTCSEEPSEE 418
Query: 815 EIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKV 994
E KIKNGH SLSNGNGIHHGAKHVSADNRRLSAPVS KMHRKIQSSLSVNSDISKKSKV
Sbjct: 419 ETSKIKNGHTSLSNGNGIHHGAKHVSADNRRLSAPVSHKMHRKIQSSLSVNSDISKKSKV 478
Query: 995 NAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDD 1174
NAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCC DEMGDD
Sbjct: 479 NAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCGDEMGDD 538
Query: 1175 CNCPCDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CNCPCDMDCGIMDACCESSDCLEICMECCGICFPS
Sbjct: 539 CNCPCDMDCGIMDACCESSDCLEICMECCGICFPS 573
>ref|XP_851321.1| PREDICTED: similar to MyoD family inhibitor (Myogenic repressor I-mf)
[Canis familiaris].
Length = 306
Score = 116 bits (291), Expect = 5e-26
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 5/125 (4%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSK--VNAVFSQK 1015
P ++NG+G H ++ S A K HRK+Q+ S+ S SKKSK + SQ
Sbjct: 115 PLVANGSG--HPSELSSTRRAGNGALGGPKAHRKLQTHPSLASQGSKKSKSSTKSTASQI 172
Query: 1016 TGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCP 1186
+ EDCCVHCIL+CLFCEFLTLCNI+L A+CG C+SE CCCCC DC+ P
Sbjct: 173 PLQAQEDCCVHCILSCLFCEFLTLCNIILDCATCGSCSSEDSCLCCCCCGSGECADCDLP 232
Query: 1187 CDMDC 1201
CD+DC
Sbjct: 233 CDLDC 237
>ref|XP_853636.1| PREDICTED: similar to MyoD family inhibitor domain containing isoform
p40 [Canis familiaris].
Length = 280
Score = 65.5 bits (158), Expect = 1e-10
Identities = 58/226 (25%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Frame = +2
Query: 728 WGNCSDDELIRTQPQRLPQL------------QTVVQESEEEIGKIKNGHPSLSNGNGI- 868
W N E R Q +P+L T + E+E E K++ ++ N I
Sbjct: 57 WRNAGHRETTRKAAQSIPRLLPCPAPWASSIGNTQMSETELEKIKVRTAEHFENDKNNIS 116
Query: 869 ------------HHGAKHVSA------------DNRRLSAPVSQKMHRKIQSSLSVNSDI 976
H K ++A D P +K+ S S+
Sbjct: 117 WLKEDTQVTNEKHADEKPINAIIINSVSEFNITDGPAKETPSEKKLSESSTSLSSLEECQ 176
Query: 977 SKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCR 1156
+K S + S + E+C IL CLFC+F C ++L +C + CC R
Sbjct: 177 TKCSYLQTDTSVHQRDTDEECA-SLILTCLFCQFWD-CLLMLPDTCETVCIN-TCCPSHR 233
Query: 1157 -------DEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF 1273
+D NC CDMDC + ++C E+S+CLE+ ME IC+
Sbjct: 234 YHHTSDESHSRNDRNCNCDMDCSLFESCHETSECLELAMEISEICY 279
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,608,178
Number of extensions: 1242329
Number of successful extensions: 6608
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6326
Number of HSP's successfully gapped: 3
Length of query: 484
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 377
Effective length of database: 15,307,552
Effective search space: 5770947104
Effective search space used: 5770947104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_951038.1| myoD family inhibitor domain-containing protein... 473 e-133
Alignment gi|NP_001159817.1| myoD family inhibitor domain-containing prot... 456 e-128
Alignment gi|NP_005577.1| myoD family inhibitor [Homo sapiens]. 171 2e-42
Alignment gi|NP_001159818.3| myoD family inhibitor domain-containing prot... 58 3e-08
>ref|NP_951038.1| myoD family inhibitor domain-containing protein isoform p40 [Homo
sapiens].
Length = 355
Score = 473 bits (1216), Expect = e-133
Identities = 233/284 (82%), Positives = 238/284 (83%), Gaps = 5/284 (1%)
Frame = +2
Query: 443 CREAVGSLHXXXXXXXXXXXXGXXXXXXX-GEGSVERPMSGAGEALTPGP---QRGAEEG 610
C EAV SLH G G GS ERPMSGAGEAL PGP QR AE G
Sbjct: 72 CGEAVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMSGAGEALAPGPVGPQRVAEAG 131
Query: 611 GGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWGNCSDDELIRTQPQRLPQLQ 790
GG LG+ AQ KCDK+NT++DITQATNS FTHGE QDQSIWGN SD ELIRTQPQRLPQLQ
Sbjct: 132 GGQLGSTAQGKCDKDNTEKDITQATNSHFTHGEMQDQSIWGNPSDGELIRTQPQRLPQLQ 191
Query: 791 TVVQ-ESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVN 967
T Q S EEIGKIKNGH LSNGNGIHHGAKH SADNR+LSAPVSQKMHRKIQSSLSVN
Sbjct: 192 TSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHRKIQSSLSVN 251
Query: 968 SDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCC 1147
SDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCC
Sbjct: 252 SDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCC 311
Query: 1148 CCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CC DEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS
Sbjct: 312 CCGDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS 355
>ref|NP_001159817.1| myoD family inhibitor domain-containing protein isoform p32 [Homo
sapiens].
Length = 246
Score = 456 bits (1173), Expect = e-128
Identities = 219/246 (89%), Positives = 224/246 (91%), Gaps = 4/246 (1%)
Frame = +2
Query: 554 MSGAGEALTPGP---QRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQS 724
MSGAGEAL PGP QR AE GGG LG+ AQ KCDK+NT++DITQATNS FTHGE QDQS
Sbjct: 1 MSGAGEALAPGPVGPQRVAEAGGGQLGSTAQGKCDKDNTEKDITQATNSHFTHGEMQDQS 60
Query: 725 IWGNCSDDELIRTQPQRLPQLQTVVQ-ESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADN 901
IWGN SD ELIRTQPQRLPQLQT Q S EEIGKIKNGH LSNGNGIHHGAKH SADN
Sbjct: 61 IWGNPSDGELIRTQPQRLPQLQTSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADN 120
Query: 902 RRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFL 1081
R+LSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFL
Sbjct: 121 RKLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFL 180
Query: 1082 TLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECC 1261
TLCNIVLGQASCGICTSEACCCCC DEMGDDCNCPCDMDCGIMDACCESSDCLEICMECC
Sbjct: 181 TLCNIVLGQASCGICTSEACCCCCGDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECC 240
Query: 1262 GICFPS 1279
GICFPS
Sbjct: 241 GICFPS 246
>ref|NP_005577.1| myoD family inhibitor [Homo sapiens].
Length = 246
Score = 171 bits (432), Expect = 2e-42
Identities = 92/182 (50%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Frame = +2
Query: 749 ELIRTQPQRLPQLQTVVQESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQ 928
E + QPQ P T + ++ +GHPS G A N L P
Sbjct: 83 EAVTCQPQGNPLGCTPLLPND-------SGHPSELGGTR--------RAGNGALGGP--- 124
Query: 929 KMHRKIQSSLSVNSDISKKSKVNA--VFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVL 1102
K HRK+Q+ S+ S SKKSK ++ SQ + EDCCVHCIL+CLFCEFLTLCNIVL
Sbjct: 125 KAHRKLQTHPSLASQGSKKSKSSSKSTTSQIPLQAQEDCCVHCILSCLFCEFLTLCNIVL 184
Query: 1103 GQASCGICTSE---ACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICF 1273
A+CG C+SE CCCCC DC+ PCD+DCGI+DACCES+DCLEICMECCG+CF
Sbjct: 185 DCATCGSCSSEDSCLCCCCCGSGECADCDLPCDLDCGILDACCESADCLEICMECCGLCF 244
Query: 1274 PS 1279
S
Sbjct: 245 SS 246
>ref|NP_001159818.3| myoD family inhibitor domain-containing protein isoform c [Homo
sapiens].
Length = 152
Score = 57.8 bits (138), Expect = 3e-08
Identities = 37/77 (48%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 443 CREAVGSLHXXXXXXXXXXXXGXXXXXXX-GEGSVERPMSGAGEALTP---GPQRGAEEG 610
C EAV SLH G G GS ERPMSGAGEAL P GPQR AE G
Sbjct: 72 CGEAVSSLHPAPHSPSSVRPAGRRARRQRRGAGSAERPMSGAGEALAPGPVGPQRVAEAG 131
Query: 611 GGWLGAPAQEKCDKENT 661
GG LG+ AQ + T
Sbjct: 132 GGQLGSTAQGLFSRSRT 148
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,800,779
Number of extensions: 1239593
Number of successful extensions: 6234
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6086
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 378
Effective length of database: 14,802,980
Effective search space: 5595526440
Effective search space used: 5595526440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780297.3| myoD family inhibitor domain-containing protein... 391 e-109
Alignment gi|NP_001103443.1| myoD family inhibitor isoform 2 [Mus musculu... 171 1e-42
Alignment gi|NP_034913.2| myoD family inhibitor isoform 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_001121564.1| hypothetical protein LOC330390 [Mus musculus]. 64 4e-10
>ref|NP_780297.3| myoD family inhibitor domain-containing protein [Mus musculus].
Length = 247
Score = 391 bits (1004), Expect = e-109
Identities = 189/247 (76%), Positives = 206/247 (83%), Gaps = 5/247 (2%)
Frame = +2
Query: 554 MSGAGEALTPGP---QRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQS 724
MS AGEAL PGP Q E GGG LG+PA E C+++NT++D AT+ G +DQS
Sbjct: 1 MSCAGEALAPGPAEQQCPVEAGGGRLGSPAHEACNEDNTEKDKRPATSGHTRCGLMRDQS 60
Query: 725 IWGNCSDDELIRTQPQRLPQLQTVVQE-SEEEIGKIKNG-HPSLSNGNGIHHGAKHVSAD 898
IW N S EL+RTQP+RLPQLQT QE +EE GKIKNG H +SNGNGI HGAKHVS +
Sbjct: 61 IWPNPSAGELVRTQPERLPQLQTSAQEPGKEETGKIKNGGHTRMSNGNGIPHGAKHVSVE 120
Query: 899 NRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEF 1078
N ++SAPVSQKMHRKIQSSLSVN+DISKKSKVNAVFS K SSPEDCCVHCILACLFCEF
Sbjct: 121 NHKISAPVSQKMHRKIQSSLSVNNDISKKSKVNAVFSPKAASSPEDCCVHCILACLFCEF 180
Query: 1079 LTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMEC 1258
LTLCNIVLGQASCGICTSEACCCCC DEMGDDC+CPCDMDCGIMDACCESSDCLEICMEC
Sbjct: 181 LTLCNIVLGQASCGICTSEACCCCCGDEMGDDCSCPCDMDCGIMDACCESSDCLEICMEC 240
Query: 1259 CGICFPS 1279
CGICFPS
Sbjct: 241 CGICFPS 247
>ref|NP_001103443.1| myoD family inhibitor isoform 2 [Mus musculus].
Length = 246
Score = 171 bits (434), Expect = 1e-42
Identities = 82/150 (54%), Positives = 102/150 (68%), Gaps = 4/150 (2%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNA-VFSQKT 1018
P L NG+ H ++ SA + A K HRK+Q+ S+ S +KS+ +A SQ
Sbjct: 97 PLLPNGSSHDHLSEPGSAGHAGNGALGGSKAHRKLQTHPSLGSQAGRKSRGSARSASQVP 156
Query: 1019 GSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCPC 1189
+ EDCCVHCIL+CLFCEFLTLCNI+L A+CG C+SE CCCCC DC+ PC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNILLDCATCGSCSSEDSCLCCCCCGSGECADCDLPC 216
Query: 1190 DMDCGIMDACCESSDCLEICMECCGICFPS 1279
D+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 217 DLDCGIVDACCESADCLEICMECCGLCFSS 246
>ref|NP_034913.2| myoD family inhibitor isoform 1 [Mus musculus].
Length = 246
Score = 171 bits (434), Expect = 1e-42
Identities = 82/150 (54%), Positives = 102/150 (68%), Gaps = 4/150 (2%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNA-VFSQKT 1018
P L NG+ H ++ SA + A K HRK+Q+ S+ S +KS+ +A SQ
Sbjct: 97 PLLPNGSSHDHLSEPGSAGHAGNGALGGSKAHRKLQTHPSLGSQAGRKSRGSARSASQVP 156
Query: 1019 GSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCPC 1189
+ EDCCVHCIL+CLFCEFLTLCNI+L A+CG C+SE CCCCC DC+ PC
Sbjct: 157 LQAQEDCCVHCILSCLFCEFLTLCNILLDCATCGSCSSEDSCLCCCCCGSGECADCDLPC 216
Query: 1190 DMDCGIMDACCESSDCLEICMECCGICFPS 1279
D+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 217 DLDCGIVDACCESADCLEICMECCGLCFSS 246
>ref|NP_001121564.1| hypothetical protein LOC330390 [Mus musculus].
Length = 189
Score = 63.5 bits (153), Expect = 4e-10
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = +2
Query: 1040 CVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCR-------DEMGDDCNCPCDMD 1198
C +L CLFC+FL C +L +C + CC R + +DCN CD+D
Sbjct: 106 CASLVLTCLFCQFLD-CLFMLPDTCETVCIN-LCCPSHRYYSASDENHPHNDCNLTCDVD 163
Query: 1199 CGIMDACCESSDCLEICMECCGICF 1273
C + ++C E+S+CLE+ ME IC+
Sbjct: 164 CSLFESCHETSECLELAMEISEICY 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,512,169
Number of extensions: 1051157
Number of successful extensions: 5717
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5329
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 379
Effective length of database: 12,463,779
Effective search space: 4723772241
Effective search space used: 4723772241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134810.2| PREDICTED: myoD family inhibitor domain-cont... 198 7e-51
Alignment gi|XP_003356672.1| PREDICTED: myoD family inhibitor isoform 2 [... 171 7e-43
Alignment gi|XP_001927069.1| PREDICTED: myoD family inhibitor isoform 1 [... 171 7e-43
>ref|XP_003134810.2| PREDICTED: myoD family inhibitor domain-containing protein [Sus
scrofa].
Length = 151
Score = 198 bits (503), Expect = 7e-51
Identities = 81/82 (98%), Positives = 82/82 (100%)
Frame = +2
Query: 1034 DCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMD 1213
+CCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMD
Sbjct: 70 NCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMD 129
Query: 1214 ACCESSDCLEICMECCGICFPS 1279
ACCESSDCLEICMECCGICFPS
Sbjct: 130 ACCESSDCLEICMECCGICFPS 151
Score = 151 bits (382), Expect = 8e-37
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +2
Query: 554 MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWG 733
MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWG
Sbjct: 1 MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWG 60
Query: 734 NCSDDELIR 760
NCSDDELIR
Sbjct: 61 NCSDDELIR 69
>ref|XP_003356672.1| PREDICTED: myoD family inhibitor isoform 2 [Sus scrofa].
Length = 246
Score = 171 bits (434), Expect = 7e-43
Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSK--VNAVFSQK 1015
P ++NG+G H ++ A A K+HRK+Q+ S+ S SKKSK + SQ
Sbjct: 98 PLVANGSG--HPSELGGARRTGNGALGGPKVHRKLQTHPSLASQGSKKSKGSTKSAASQI 155
Query: 1016 TGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCP 1186
+ EDCCVHCIL+CLFCEFLTLCNIVL A+CG C+SE CCCCC DC+ P
Sbjct: 156 PLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLP 215
Query: 1187 CDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CD+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 216 CDLDCGILDACCESADCLEICMECCGLCFSS 246
>ref|XP_001927069.1| PREDICTED: myoD family inhibitor isoform 1 [Sus scrofa].
Length = 246
Score = 171 bits (434), Expect = 7e-43
Identities = 84/151 (55%), Positives = 103/151 (68%), Gaps = 5/151 (3%)
Frame = +2
Query: 842 PSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSK--VNAVFSQK 1015
P ++NG+G H ++ A A K+HRK+Q+ S+ S SKKSK + SQ
Sbjct: 98 PLVANGSG--HPSELGGARRTGNGALGGPKVHRKLQTHPSLASQGSKKSKGSTKSAASQI 155
Query: 1016 TGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSE---ACCCCCRDEMGDDCNCP 1186
+ EDCCVHCIL+CLFCEFLTLCNIVL A+CG C+SE CCCCC DC+ P
Sbjct: 156 PLQAQEDCCVHCILSCLFCEFLTLCNIVLDCATCGSCSSEDSCLCCCCCGSGECADCDLP 215
Query: 1187 CDMDCGIMDACCESSDCLEICMECCGICFPS 1279
CD+DCGI+DACCES+DCLEICMECCG+CF S
Sbjct: 216 CDLDCGILDACCESADCLEICMECCGLCFSS 246
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,636,062
Number of extensions: 775415
Number of successful extensions: 3982
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3909
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 381
Effective length of database: 8,779,541
Effective search space: 3345005121
Effective search space used: 3345005121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001916
(1454 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 890 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 890 bits (449), Expect = 0.0
Identities = 449/449 (100%)
Strand = Plus / Plus
Query: 1 cttcggcttcctgaccgagacagagacgcacgctagggagctggtggcccagccgggtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433388 cttcggcttcctgaccgagacagagacgcacgctagggagctggtggcccagccgggtcg 33433447
Query: 61 cgccgcccccagcctcggggccgagagccaagagttcgaggcctccctatccggatatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433448 cgccgcccccagcctcggggccgagagccaagagttcgaggcctccctatccggatatga 33433507
Query: 121 tgaaaaggagcaacagagggagaagtgtttctggcctgtaggagtggtggaagaggggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433508 tgaaaaggagcaacagagggagaagtgtttctggcctgtaggagtggtggaagaggggaa 33433567
Query: 181 agagaggcagaggggggaaaagtccccctcggaggggaaccggcctggctgagctggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433568 agagaggcagaggggggaaaagtccccctcggaggggaaccggcctggctgagctggctg 33433627
Query: 241 gaaagaaggggcggagagcaccagtcacaggagcggccgcgctgcggttgccgctgctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433628 gaaagaaggggcggagagcaccagtcacaggagcggccgcgctgcggttgccgctgctgc 33433687
Query: 301 ggtgtctgctgagccggagggaggcgggggccactcaggggcagccgccgccgtcagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433688 ggtgtctgctgagccggagggaggcgggggccactcaggggcagccgccgccgtcagtct 33433747
Query: 361 gccgaaacctgtggcccctgcctgagcctcgctaaaggcggaagaggaggaagaggaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33433748 gccgaaacctgtggcccctgcctgagcctcgctaaaggcggaagaggaggaagaggaagg 33433807
Query: 421 ggctttgagcgagttggggggatgccgag 449
|||||||||||||||||||||||||||||
Sbjct: 33433808 ggctttgagcgagttggggggatgccgag 33433836
Score = 874 bits (441), Expect = 0.0
Identities = 448/449 (99%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 1 cttcggcttcctgaccgagacagagacgcacgctagggagctggtggcccagccgggtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453976 cttcggcttcctgaccgagacagagacgcacgctagggagctggtggcccagccgggtcg 33453917
Query: 61 cgccgcccccagcctcggggccgagagccaagagttcgaggcctccctatccggatatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453916 cgccgcccccagcctcggggccgagagccaagagttcgaggcctccctatccggatatga 33453857
Query: 121 tgaaaaggagcaacagagggagaagtgtttctggcctgtaggagtggtggaagaggggaa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453856 tgaaaaggagca-cagagggagaagtgtttctggcctgtaggagtggtggaagaggggaa 33453798
Query: 181 agagaggcagaggggggaaaagtccccctcggaggggaaccggcctggctgagctggctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453797 agagaggcagaggggggaaaagtccccctcggaggggaaccggcctggctgagctggctg 33453738
Query: 241 gaaagaaggggcggagagcaccagtcacaggagcggccgcgctgcggttgccgctgctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453737 gaaagaaggggcggagagcaccagtcacaggagcggccgcgctgcggttgccgctgctgc 33453678
Query: 301 ggtgtctgctgagccggagggaggcgggggccactcaggggcagccgccgccgtcagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453677 ggtgtctgctgagccggagggaggcgggggccactcaggggcagccgccgccgtcagtct 33453618
Query: 361 gccgaaacctgtggcccctgcctgagcctcgctaaaggcggaagaggaggaagaggaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453617 gccgaaacctgtggcccctgcctgagcctcgctaaaggcggaagaggaggaagaggaagg 33453558
Query: 421 ggctttgagcgagttggggggatgccgag 449
|||||||||||||||||||||||||||||
Sbjct: 33453557 ggctttgagcgagttggggggatgccgag 33453529
Score = 741 bits (374), Expect = 0.0
Identities = 391/394 (99%), Gaps = 2/394 (0%)
Strand = Plus / Minus
Query: 1030 tgaagattgctgtgtccactgtatcctggcctgcctgttctgtgaattcctgacgctctg 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266729 tgaagattgctgtgtccactgtatcctggcctgcctgttctgtgaattcctgacgctctg 33266670
Query: 1090 caacattgtcttgggacaagcctcgtgtggcatctgcacctcagaagcctgctgctgttg 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266669 caacattgtcttgggacaagcctcgtgtggcatctgcacctcagaagcctgctgctgttg 33266610
Query: 1150 ctgcagagacgaaatgggagatgactgtaactgcccttgtgacatggactgtggcatcat 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266609 ctgcagagacgaaatgggagatgactgtaactgcccttgtgacatggactgtggcatcat 33266550
Query: 1210 ggatgcctgttgtgaatcatcagactgtttggaaatctgtatggaatgctgtggaatttg 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266549 ggatgcctgttgtgaatcatcagactgtttggaaatctgtatggaatgctgtggaatttg 33266490
Query: 1270 tttcccttcataaatatttatcttctgtgtgttaaaactggagagtgtttcaaaattttt 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266489 tttcccttcataaatatttatcttctgtgtgttaaaactggagagtgtttcaaaattttt 33266430
Query: 1330 cttaaggaggaag-aaaagcacatggtaagattttcatcaaataactcagtatttgcacg 1388
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33266429 cttaaggaggaagaaaaagcacatggtaagattttcatcaaataactcagtatttgcact 33266370
Query: 1389 gttaactcatta-tgtaggtaatctctgaaagcc 1421
|||||||||||| |||||||||||||||||||||
Sbjct: 33266369 gttaactcattattgtaggtaatctctgaaagcc 33266336
Score = 541 bits (273), Expect = e-151
Identities = 273/273 (100%)
Strand = Plus / Minus
Query: 762 cccaacctcagcgcttgccgcagcttcaaactgtagtgcaggaaagtgaggaggaaatag 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33305459 cccaacctcagcgcttgccgcagcttcaaactgtagtgcaggaaagtgaggaggaaatag 33305400
Query: 822 gcaagataaagaatggtcacccaagtctgagcaatggaaatggaatccaccacggggcca 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33305399 gcaagataaagaatggtcacccaagtctgagcaatggaaatggaatccaccacggggcca 33305340
Query: 882 aacatgtatctgccgataatcgaagactgtcagcacctgtttctcaaaaaatgcatagaa 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33305339 aacatgtatctgccgataatcgaagactgtcagcacctgtttctcaaaaaatgcatagaa 33305280
Query: 942 aaattcaatccagcttgtctgtcaacagtgacatcagtaagaagagcaaagtaaatgctg 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33305279 aaattcaatccagcttgtctgtcaacagtgacatcagtaagaagagcaaagtaaatgctg 33305220
Query: 1002 tcttttcccagaagacaggctcttcacctgaag 1034
|||||||||||||||||||||||||||||||||
Sbjct: 33305219 tcttttcccagaagacaggctcttcacctgaag 33305187
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 448 agaagcagttggttccctccactcaacatctcccagcccttcgtgcttctgccccacagg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33434111 agaagcagttggttccctccactcaacatctcccagcccttcgtgcttctgccccacagg 33434170
Query: 508 gcggcgagctaggcggaggcgcggcgagggctcggtggagcggcccatgtccggcgcggg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33434171 gcggcgagctaggcggaggcgcggcgagggctcggtggagcggcccatgtccggcgcggg 33434230
Query: 568 cgaagccctcactcccgggccccagcgcggggccgaggagggcggcggctggctgggtgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33434231 cgaagccctcactcccgggccccagcgcggggccgaggagggcggcggctggctgggtgc 33434290
Query: 628 cccagcccagg 638
|||||||||||
Sbjct: 33434291 cccagcccagg 33434301
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 448 agaagcagttggttccctccactcaacatctcccagcccttcgtgcttctgccccacagg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453254 agaagcagttggttccctccactcaacatctcccagcccttcgtgcttctgccccacagg 33453195
Query: 508 gcggcgagctaggcggaggcgcggcgagggctcggtggagcggcccatgtccggcgcggg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453194 gcggcgagctaggcggaggcgcggcgagggctcggtggagcggcccatgtccggcgcggg 33453135
Query: 568 cgaagccctcactcccgggccccagcgcggggccgaggagggcggcggctggctgggtgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33453134 cgaagccctcactcccgggccccagcgcggggccgaggagggcggcggctggctgggtgc 33453075
Query: 628 cccagcccagg 638
|||||||||||
Sbjct: 33453074 cccagcccagg 33453064
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 638 gaaaaatgtgataaagaaaatactgaccgagatattactcaagccaccaatagctgcttc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33342657 gaaaaatgtgataaagaaaatactgaccgagatattactcaagccaccaatagctgcttc 33342598
Query: 698 acacatggagagaagcaagaccagtccatttggggaaattgttcggatgatgaactcatc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33342597 acacatggagagaagcaagaccagtccatttggggaaattgttcggatgatgaactcatc 33342538
Query: 758 agaa 761
||||
Sbjct: 33342537 agaa 33342534
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 638 gaaaaatgtgataaagaaaatactgaccgagatattactcaagccaccaatagctgcttc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33507908 gaaaaatgtgataaagaaaatactgaccgagatattactcaagccaccaatagctgcttc 33507967
Query: 698 acacatggagagaagcaagaccagtccatttggggaaattgttcggatgatgaactcatc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33507968 acacatggagagaagcaagaccagtccatttggggaaattgttcggatgatgaactcatc 33508027
Query: 758 agaa 761
||||
Sbjct: 33508028 agaa 33508031
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,544,032
Number of extensions: 589
Number of successful extensions: 589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 8
Length of query: 1454
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1433
Effective length of database: 2,808,413,156
Effective search space: 4024456052548
Effective search space used: 4024456052548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)