Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069882.1| bax inhibitor 1 [Bos taurus]. 361 e-100
>ref|NP_001069882.1| bax inhibitor 1 [Bos taurus].
Length = 236
Score = 361 bits (926), Expect = e-100
Identities = 182/228 (79%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDAL KFSHITPSTQQHLKKVYASFALCMFVAAAGAY+HVVT FIQ
Sbjct: 1 MNIFDRKINFDALFKFSHITPSTQQHLKKVYASFALCMFVAAAGAYIHVVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PALDLCIAINPSILPTAFMG
Sbjct: 61 ALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCFTLSALYARRRSYLFLGGI GNLFFGS+WLFQANLY+GLVV
Sbjct: 121 TAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMLLSSLGNLFFGSVWLFQANLYMGLVV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN
Sbjct: 181 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 228
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,387,876
Number of extensions: 1207113
Number of successful extensions: 4070
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4066
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534808.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (T... 362 e-100
Alignment gi|XP_533325.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (T... 362 e-100
Alignment gi|XP_861554.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (T... 251 1e-66
>ref|XP_534808.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (Testis enhanced gene
transcript) isoform 1 [Canis familiaris].
Length = 237
Score = 362 bits (928), Expect = e-100
Identities = 183/228 (80%), Positives = 186/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT F+Q
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFLQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIAINPSILPTAFMG
Sbjct: 61 ALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCFTLSALYARRRSYLFLGG+ GNLFFGSIWLFQANLYVGLVV
Sbjct: 121 TAMIFTCFTLSALYARRRSYLFLGGVLMSAMSLMLLSSLGNLFFGSIWLFQANLYVGLVV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN
Sbjct: 181 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 228
>ref|XP_533325.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (Testis enhanced gene
transcript) [Canis familiaris].
Length = 237
Score = 362 bits (928), Expect = e-100
Identities = 183/228 (80%), Positives = 186/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT F+Q
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFLQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIAINPSILPTAFMG
Sbjct: 61 ALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCFTLSALYARRRSYLFLGG+ GNLFFGSIWLFQANLYVGLVV
Sbjct: 121 TAMIFTCFTLSALYARRRSYLFLGGVLMSAMSLMLLSSLGNLFFGSIWLFQANLYVGLVV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN
Sbjct: 181 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 228
>ref|XP_861554.1| PREDICTED: similar to Bax inhibitor-1 (BI-1) (Testis enhanced gene
transcript) isoform 3 [Canis familiaris].
Length = 166
Score = 251 bits (641), Expect = 1e-66
Identities = 126/157 (80%), Positives = 128/157 (81%)
Frame = +1
Query: 331 MATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMGTAMIFTCFTLS 510
MATPHSHETEQKR PAL+LCIAINPSILPTAFMGTAMIFTCFTLS
Sbjct: 1 MATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMGTAMIFTCFTLS 60
Query: 511 ALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVVMCGFVLFDTQL 690
ALYARRRSYLFLGG+ GNLFFGSIWLFQANLYVGLVVMCGFVLFDTQL
Sbjct: 61 ALYARRRSYLFLGGVLMSAMSLMLLSSLGNLFFGSIWLFQANLYVGLVVMCGFVLFDTQL 120
Query: 691 IIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
IIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN
Sbjct: 121 IIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,389,269
Number of extensions: 1245878
Number of successful extensions: 4243
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4234
Number of HSP's successfully gapped: 3
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092046.1| bax inhibitor 1 isoform 2 [Homo sapiens]. 360 2e-99
Alignment gi|NP_003208.2| bax inhibitor 1 isoform 1 [Homo sapiens]. 353 2e-97
>ref|NP_001092046.1| bax inhibitor 1 isoform 2 [Homo sapiens].
Length = 295
Score = 360 bits (923), Expect = 2e-99
Identities = 179/235 (76%), Positives = 189/235 (80%)
Frame = +1
Query: 97 CPTDASIMNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRF 276
C TD+ MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVH+VT F
Sbjct: 52 CCTDSGTMNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHF 111
Query: 277 IQXXXXXXXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSI 456
IQ MIWLMATPHSHETEQKR PAL+ CIA+NPSI
Sbjct: 112 IQAGLLSALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSI 171
Query: 457 LPTAFMGTAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQAN 636
LPTAFMGTAMIFTCFTLSALYARRRSYLFLGGI GN+FFGSIWLFQAN
Sbjct: 172 LPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQAN 231
Query: 637 LYVGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
LYVGLVVMCGFVLFDTQLIIEKAE+GD+DYIWHC+DLFLDF+T+FRKLMMILAMN
Sbjct: 232 LYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMN 286
>ref|NP_003208.2| bax inhibitor 1 isoform 1 [Homo sapiens].
Length = 237
Score = 353 bits (906), Expect = 2e-97
Identities = 176/228 (77%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVH+VT FIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHMVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+ CIA+NPSILPTAFMG
Sbjct: 61 ALGSLILMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALEFCIAVNPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCFTLSALYARRRSYLFLGGI GN+FFGSIWLFQANLYVGLVV
Sbjct: 121 TAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGNVFFGSIWLFQANLYVGLVV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAE+GD+DYIWHC+DLFLDF+T+FRKLMMILAMN
Sbjct: 181 MCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMILAMN 228
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,500,468
Number of extensions: 1222631
Number of successful extensions: 3901
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3898
Number of HSP's successfully gapped: 2
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080945.1| bax inhibitor 1 [Mus musculus]. 353 1e-97
Alignment gi|NP_001164507.1| bax inhibitor 1 [Mus musculus]. 353 1e-97
Alignment gi|NP_001164506.1| bax inhibitor 1 [Mus musculus]. 353 1e-97
Alignment gi|NP_001164505.1| bax inhibitor 1 [Mus musculus]. 353 1e-97
>ref|NP_080945.1| bax inhibitor 1 [Mus musculus].
Length = 237
Score = 353 bits (907), Expect = 1e-97
Identities = 178/228 (78%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT FIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIA+NPSILPTAFMG
Sbjct: 61 ALGSLALMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCF+LSALYARRRSYLFLGGI GNLFFGSIWLFQANLY+GL+V
Sbjct: 121 TAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAE+GDKDYIWHCVDLFLDFVTLFRKLM+ILA N
Sbjct: 181 MCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLILAFN 228
>ref|NP_001164507.1| bax inhibitor 1 [Mus musculus].
Length = 237
Score = 353 bits (907), Expect = 1e-97
Identities = 178/228 (78%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT FIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIA+NPSILPTAFMG
Sbjct: 61 ALGSLALMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCF+LSALYARRRSYLFLGGI GNLFFGSIWLFQANLY+GL+V
Sbjct: 121 TAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAE+GDKDYIWHCVDLFLDFVTLFRKLM+ILA N
Sbjct: 181 MCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLILAFN 228
>ref|NP_001164506.1| bax inhibitor 1 [Mus musculus].
Length = 237
Score = 353 bits (907), Expect = 1e-97
Identities = 178/228 (78%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT FIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIA+NPSILPTAFMG
Sbjct: 61 ALGSLALMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCF+LSALYARRRSYLFLGGI GNLFFGSIWLFQANLY+GL+V
Sbjct: 121 TAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAE+GDKDYIWHCVDLFLDFVTLFRKLM+ILA N
Sbjct: 181 MCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLILAFN 228
>ref|NP_001164505.1| bax inhibitor 1 [Mus musculus].
Length = 237
Score = 353 bits (907), Expect = 1e-97
Identities = 178/228 (78%), Positives = 185/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVT FIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTHFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PAL+LCIA+NPSILPTAFMG
Sbjct: 61 ALGSLALMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCF+LSALYARRRSYLFLGGI GNLFFGSIWLFQANLY+GL+V
Sbjct: 121 TAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGNLFFGSIWLFQANLYLGLLV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAE+GDKDYIWHCVDLFLDFVTLFRKLM+ILA N
Sbjct: 181 MCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLILAFN 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,321,750
Number of extensions: 1029746
Number of successful extensions: 3252
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005348.1| bax inhibitor 1 [Sus scrofa]. 364 e-101
>ref|NP_001005348.1| bax inhibitor 1 [Sus scrofa].
Length = 237
Score = 364 bits (934), Expect = e-101
Identities = 186/228 (81%), Positives = 186/228 (81%)
Frame = +1
Query: 118 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQXXXXX 297
MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQ
Sbjct: 1 MNIFDRKINFDALLKFSHITPSTQQHLKKVYASFALCMFVAAAGAYVHVVTRFIQAGLLS 60
Query: 298 XXXXXXXMIWLMATPHSHETEQKRXXXXXXXXXXXXXXXXPALDLCIAINPSILPTAFMG 477
MIWLMATPHSHETEQKR PALDLCIAINPSILPTAFMG
Sbjct: 61 ALGSLGLMIWLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALDLCIAINPSILPTAFMG 120
Query: 478 TAMIFTCFTLSALYARRRSYLFLGGIXXXXXXXXXXXXXGNLFFGSIWLFQANLYVGLVV 657
TAMIFTCFTLSALYARRRSYLFLGGI GNLFFGSIWLFQANLYVGLVV
Sbjct: 121 TAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMVLSSLGNLFFGSIWLFQANLYVGLVV 180
Query: 658 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMILAMN 801
MCGFVLFDTQLIIEKAENGDKDYIWHCVDLF DFVTLFRKLMMILAMN
Sbjct: 181 MCGFVLFDTQLIIEKAENGDKDYIWHCVDLFSDFVTLFRKLMMILAMN 228
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,871,884
Number of extensions: 777611
Number of successful extensions: 2610
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2608
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001926
(1300 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118554.1| Sus scrofa unplaced genomic scaffold ChrUScaf977 858 0.0
>gb|JH118554.1| Sus scrofa unplaced genomic scaffold ChrUScaf977
Length = 96899
Score = 858 bits (433), Expect = 0.0
Identities = 483/496 (97%), Gaps = 3/496 (0%)
Strand = Plus / Minus
Query: 806 aggacaagaagaaagagaagaagtgaattgaccatccagccttccccagtttgacctcct 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10030 aggacaagaagaaagagaagaagtgaattgaccatccagccttccccagtttgacctcct 9971
Query: 866 ctccctccgcccctcatttcctctttgcacacattacaggtggcgtgttctgtgataatg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9970 ctccctccgcccctcatttcctctttgcacacattacaggtggcgtgttctgtgataatg 9911
Query: 926 aaaagcatcagaaaagcttttgtactttgtggttttctctattttgacttttttgatcaa 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9910 aaaagcatcagaaaagcttttgtactttgtggttttctctattttgacttttttgatcaa 9851
Query: 986 aaaactgattagcagactatagtttggagtttggcttcgtggttcctgggggtcgtcccc 1045
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 9850 aaaactgattagcagactatagtttggagtttggcttcgt-gttcctggggttcgtcccc 9792
Query: 1046 gctcccttttctgtcagccccatgcctagtgtcttcctctgctcaggcagccagcccacc 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9791 gctcccttttctgtcagccccatgcctagtgtcttcctctgctcaggcagccagcccacc 9732
Query: 1106 gaggtgaggaacgggatctgcaaaggaagcaaacgccaggagtccgtttttccaccgagc 1165
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9731 gaggtgaggaacgggatctgcagaggaagcaaacgccaggagtccgtttttccaccgagc 9672
Query: 1166 ttcatcaaggggacttaaaccgttggntaaaagcgccgcggcccttccttcctcaacaat 1225
||||||||| |||||||||||||| | || | |||||||||||||||||||||| || |
Sbjct: 9671 ttcatcaagtggacttaaaccgtttggtagagccgccgcggcccttccttcctcagcatt 9612
Query: 1226 gtttggtttgtgcgcagttcctgtgggactaggcagtgtgggttccctggggaaagaag- 1284
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9611 gtttggtttgtgcgcagttcctgtgggactaggcagtgtgggttccct-gggaaagaagt 9553
Query: 1285 ttgctgatcccattgt 1300
||||||||||||||||
Sbjct: 9552 ttgctgatcccattgt 9537
Score = 248 bits (125), Expect = 7e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 280 caggctggcctgctgtctgccttgggctccctggggttgatgatttggctgatggcaaca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14787 caggctggcctgctgtctgccttgggctccctggggttgatgatttggctgatggcaaca 14728
Query: 340 cctcatagccatgaaactgagcaaaaaagactgggacttcttgctggatttgctttcctt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14727 cctcatagccatgaaactgagcaaaaaagactgggacttcttgctggatttgctttcctt 14668
Query: 400 acagg 404
|||||
Sbjct: 14667 acagg 14663
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 629 aggcaaacctgtatgtggggctggtggtcatgtgtggctttgtcctgtttgatactcaac 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12316 aggcaaacctgtatgtggggctggtggtcatgtgtggctttgtcctgtttgatactcaac 12257
Query: 689 tcattattgaaaaggctgaaaatggagataaagattatatctgg 732
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256 tcattattgaaaaggctgaaaatggagataaagattatatctgg 12213
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 450 cagcatccttcccaccgccttcatgggcacggcaatgatcttcacctgcttcaccctgag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13191 cagcatccttcccaccgccttcatgggcacggcaatgatcttcacctgcttcaccctgag 13132
Query: 510 cgcgctctatgccaggcgccgtagctacctctttctgggaggta 553
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13131 cgcgctctatgccaggcgccgtagctacctctttctgggaggta 13088
Score = 178 bits (90), Expect = 5e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 84 agagtggaggctgtgtcccacagacgctagcatcatgaatatatttgatcggaagatcaa 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18065 agagtggaggctgtgtcccacagacgctagcatcatgaatatatttgatcggaagatcaa 18006
Query: 144 ctttgatgccctcttaaagttttcccacat 173
||||||||||||||||||||||||||||||
Sbjct: 18005 ctttgatgccctcttaaagttttcccacat 17976
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 aagagtctggagcggaccctgggagagtcagaagcacatccggtgttagaggagctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27092 aagagtctggagcggaccctgggagagtcagaagcacatccggtgttagaggagctgtgt 27033
Query: 61 gagctcttgagaagcgggttagaag 85
|||||||||||||||||||||||||
Sbjct: 27032 gagctcttgagaagcgggttagaag 27008
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 549 aggtatcttgatgtcagccatgagcctgatggtcttgtcttccctggggaaccttttctt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12906 aggtatcttgatgtcagccatgagcctgatggtcttgtcttccctggggaaccttttctt 12847
Query: 609 tggatccatttggcttttccagg 631
|||||||||||||||||||||||
Sbjct: 12846 tggatccatttggcttttccagg 12824
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 731 ggcactgtgttgacctcttcttagactttgttactctcttcagaaaactcatgatgattc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11524 ggcactgtgttgacctcttcttagactttgttactctcttcagaaaactcatgatgattc 11465
Query: 791 tggctat 797
|||||||
Sbjct: 11464 tggctat 11458
Score = 101 bits (51), Expect = 9e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 402 aggagttggcctcggccctgcactggacttgtgcattgccattaaccccag 452
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13342 aggagttggcctcggccctgcactggacttgtgcattgccattaaccccag 13292
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 174 aaccccctcgacacagcagcacctgaagaaggtctatgccag 215
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17461 aaccccctcgacacagcagcacctgaagaaggtctatgccag 17420
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 244 gcgggggcctatgtccatgtggtcacccgtttcattcagg 283
||||||||||||||||||||||||||||||||||||||||
Sbjct: 17319 gcgggggcctatgtccatgtggtcacccgtttcattcagg 17280
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,667,199
Number of extensions: 342
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 11
Length of query: 1300
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1279
Effective length of database: 2,808,413,156
Effective search space: 3591960426524
Effective search space used: 3591960426524
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)