Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777068.1| peroxiredoxin-6 [Bos taurus]. 445 e-125
Alignment gi|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus]. 417 e-116
Alignment gi|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [B... 415 e-116
Alignment gi|NP_777188.1| peroxiredoxin-2 [Bos taurus]. 86 7e-17
Alignment gi|NP_776856.1| peroxiredoxin-1 [Bos taurus]. 80 5e-15
Alignment gi|NP_776858.1| peroxiredoxin-4 [Bos taurus]. 66 7e-11
Alignment gi|NP_776857.1| thioredoxin-dependent peroxide reductase, mitoc... 65 2e-10
>ref|NP_777068.1| peroxiredoxin-6 [Bos taurus].
Length = 224
Score = 445 bits (1144), Expect = e-125
Identities = 218/224 (97%), Positives = 221/224 (98%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLGDEAPNFEANTTIGRIRFHD+LGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGDEAPNFEANTTIGRIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEP E LPFPIIDDK+RDLAIQLGMLDPA
Sbjct: 61 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPA 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKDE+GMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD
Sbjct: 121 EKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WKNGDSVMVLP IPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKNGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 224
>ref|XP_002707788.1| PREDICTED: peroxiredoxin-6-like [Bos taurus].
Length = 224
Score = 417 bits (1071), Expect = e-116
Identities = 206/224 (91%), Positives = 212/224 (94%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
M G LLLGDEAPNFEANT IGRIRFHD+LGDSWGIL SHPRDFT VCTTELGRAAKLAPE
Sbjct: 1 MLGDLLLGDEAPNFEANTPIGRIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNV MIALSIDSVEDHLAWSKDINAYNGE P E LPFPIIDDK+RDLAIQLGMLDPA
Sbjct: 61 FAKRNVMMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPA 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKD++ MP T+RVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD
Sbjct: 121 EKDKKDMPETSRVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WKNGDSVMVLP +PEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKNGDSVMVLPTVPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 224
>ref|XP_001252820.1| PREDICTED: peroxiredoxin-6-like isoform 1 [Bos taurus].
Length = 224
Score = 415 bits (1066), Expect = e-116
Identities = 205/224 (91%), Positives = 211/224 (94%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
M G LLLGDEAPNFEANT IGRIRFHD+LGDSWGIL SHPRDFT VCTTELGRAAKLAPE
Sbjct: 1 MLGDLLLGDEAPNFEANTPIGRIRFHDYLGDSWGILSSHPRDFTTVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNV MIALSIDSVEDHLAWSKDINAYNGE P E LPFPIIDDK+RDLAIQLGMLDPA
Sbjct: 61 FAKRNVMMIALSIDSVEDHLAWSKDINAYNGEGPTEKLPFPIIDDKNRDLAIQLGMLDPA 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKD++ MP T+RVVFIFGPDKKLKLSILYPA TGRNFDEILRVIISLQLTAEKRVATPVD
Sbjct: 121 EKDKKDMPETSRVVFIFGPDKKLKLSILYPANTGRNFDEILRVIISLQLTAEKRVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WKNGDSVMVLP +PEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKNGDSVMVLPTVPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 224
>ref|NP_777188.1| peroxiredoxin-2 [Bos taurus].
Length = 199
Score = 85.9 bits (211), Expect = 7e-17
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 4/202 (1%)
Frame = +1
Query: 187 LGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 354
+G AP F+A + ++ D+ G + +LF +P DFT VC TE+ + A EF
Sbjct: 9 VGKPAPEFQATAVVDGAFKEVKLSDYKG-KYVVLFFYPLDFTFVCPTEIVAFSDRAAEFH 67
Query: 355 KRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEK 534
K N +++ +S+DS HLAW IN E L P++ D +R L+ G+L K
Sbjct: 68 KLNCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLNIPLLADVTRKLSSDYGVL----K 120
Query: 535 DEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWK 714
+++G + R +F+ L+ + GR+ DE LR++ + Q T E P W
Sbjct: 121 EDEG--IAYRGLFVIDGKGVLRQVTINDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWT 178
Query: 715 NGDSVMVLPNIPEEEAKKLFPK 780
G S + PN+ +++K+ F K
Sbjct: 179 PG-SDTIKPNV--DDSKEYFSK 197
>ref|NP_776856.1| peroxiredoxin-1 [Bos taurus].
Length = 199
Score = 79.7 bits (195), Expect = 5e-15
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP F+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHRAPQFKATAVMPDGQFKDISLADYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P+I R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISAPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|NP_776858.1| peroxiredoxin-4 [Bos taurus].
Length = 274
Score = 65.9 bits (159), Expect = 7e-11
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP +E I ++ D+ G + + F +P DFT VC TE+ EF N
Sbjct: 88 APYWEGTAVINGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINT 146
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A S+DS HLAW IN + ++ P++ D + ++ G+ ++ G
Sbjct: 147 EVVACSVDSQFTHLAW---INTPRRQGGLGSINIPLLADLNHQISKDYGVY----LEDSG 199
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
T R +FI L+ L GR+ DE LR++ + Q T + P WK G
Sbjct: 200 H--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 257
Query: 727 VMV 735
++
Sbjct: 258 TII 260
>ref|NP_776857.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Bos taurus].
Length = 257
Score = 64.7 bits (156), Expect = 2e-10
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 4/175 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + I DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 70 APYFKGTAVVSGEFKEISLDDFKG-KYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNC 128
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +G
Sbjct: 129 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 179
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDW 711
+ R +FI P+ +K + GR+ +E LR++ + Q P +W
Sbjct: 180 PGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVEAHGEVCPANW 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,841,391
Number of extensions: 1298497
Number of successful extensions: 3831
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3823
Number of HSP's successfully gapped: 7
Length of query: 417
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,207,134
Effective search space: 4432625808
Effective search space used: 4432625808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537190.2| PREDICTED: similar to Peroxiredoxin 6 (Antioxid... 430 e-120
Alignment gi|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 86 1e-16
Alignment gi|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredo... 86 1e-16
Alignment gi|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis fa... 84 3e-16
Alignment gi|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1... 72 1e-12
Alignment gi|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3... 67 3e-11
Alignment gi|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) ... 67 5e-11
Alignment gi|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent per... 64 4e-10
Alignment gi|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent per... 62 9e-10
Alignment gi|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent per... 61 2e-09
>ref|XP_537190.2| PREDICTED: similar to Peroxiredoxin 6 (Antioxidant protein 2)
(1-Cys peroxiredoxin) (1-Cys PRX) (Acidic
calcium-independent phospholipase A2) (aiPLA2)
(Non-selenium glutathione peroxidase) (NSGPx) (24 kDa
protein) (Liver 2D page spot 40) (Red blood cells
page... [Canis familiaris].
Length = 245
Score = 430 bits (1105), Expect = e-120
Identities = 209/222 (94%), Positives = 217/222 (97%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 354
G LLLGDEAPNFEANTTIGRIRFHD+LGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA
Sbjct: 24 GSLLLGDEAPNFEANTTIGRIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 83
Query: 355 KRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEK 534
K+NVKMIALS+DSVEDHLAWSKDINAYNG+EP ETLPFPIIDDK+RDLAI LGMLDPAEK
Sbjct: 84 KKNVKMIALSVDSVEDHLAWSKDINAYNGQEPTETLPFPIIDDKNRDLAILLGMLDPAEK 143
Query: 535 DEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWK 714
DE+GMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVI SLQLTAEKRVATPVDWK
Sbjct: 144 DEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVITSLQLTAEKRVATPVDWK 203
Query: 715 NGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
+GDSVMVLP IPE+EAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 204 DGDSVMVLPTIPEDEAKKLFPKGVFTKELPSGKKYLRYTPQP 245
>ref|XP_867426.1| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 2 [Canis familiaris].
Length = 198
Score = 85.5 bits (210), Expect = 1e-16
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 4/202 (1%)
Frame = +1
Query: 187 LGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 354
+G AP F+A + ++ D+ G + +LF +P DFT VC TE+ ++ A +F
Sbjct: 8 IGKPAPPFQATAVVDGAFKEVKLCDYKG-KYLVLFFYPLDFTFVCPTEIIAFSEHAEDFR 66
Query: 355 KRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEK 534
K +++ +S+DS HLAW IN E L P++ D +R L+ G+L K
Sbjct: 67 KLGCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLNIPLVADVTRSLSEDYGVL----K 119
Query: 535 DEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWK 714
+++G + R +FI L+ + GR+ DE+LR++ + Q T E P WK
Sbjct: 120 EDEG--IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWK 177
Query: 715 NGDSVMVLPNIPEEEAKKLFPK 780
G S + PN+ +++K+ F K
Sbjct: 178 PG-SDTIKPNV--DDSKEYFSK 196
>ref|XP_542042.2| PREDICTED: similar to Peroxiredoxin 2 (Thioredoxin peroxidase 1)
(Thioredoxin-dependent peroxide reductase 1)
(Thiol-specific antioxidant protein) (TSA) (PRP)
(Natural killer cell enhancing factor B) (NKEF-B)
isoform 1 [Canis familiaris].
Length = 198
Score = 85.5 bits (210), Expect = 1e-16
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 4/202 (1%)
Frame = +1
Query: 187 LGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFA 354
+G AP F+A + ++ D+ G + +LF +P DFT VC TE+ ++ A +F
Sbjct: 8 IGKPAPPFQATAVVDGAFKEVKLCDYKG-KYLVLFFYPLDFTFVCPTEIIAFSEHAEDFR 66
Query: 355 KRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEK 534
K +++ +S+DS HLAW IN E L P++ D +R L+ G+L K
Sbjct: 67 KLGCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLNIPLVADVTRSLSEDYGVL----K 119
Query: 535 DEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWK 714
+++G + R +FI L+ + GR+ DE+LR++ + Q T E P WK
Sbjct: 120 EDEG--IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEVLRLVQAFQYTDEHGEVCPAGWK 177
Query: 715 NGDSVMVLPNIPEEEAKKLFPK 780
G S + PN+ +++K+ F K
Sbjct: 178 PG-SDTIKPNV--DDSKEYFSK 196
>ref|XP_532599.2| PREDICTED: similar to peroxiredoxin 1 [Canis familiaris].
Length = 199
Score = 84.0 bits (206), Expect = 3e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPAPNFKATAVMPDGQFKDLSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLVSDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|XP_532386.1| PREDICTED: similar to peroxiredoxin 1 isoform 1 [Canis familiaris].
Length = 199
Score = 71.6 bits (174), Expect = 1e-12
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G PNF+A + RF D L D G +LF +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPVPNFKATAVMPDGRFKDLSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D +A +L
Sbjct: 64 EEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGP---MNIPLVSDPKHTIAQDYEVLK 120
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
E ++ R +F+ L + G + DE LR++ + T +
Sbjct: 121 ADES------ISLRGLFVIDDKGILWQITVNDLPVGHSVDESLRLVQAFPFTDKHGEVCS 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|XP_859371.1| PREDICTED: similar to peroxiredoxin 4 isoform 3 [Canis familiaris].
Length = 257
Score = 67.4 bits (163), Expect = 3e-11
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 4/189 (2%)
Frame = +1
Query: 181 LLLGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
+++ AP +E I ++ D+ G + + F +P DFT VC TE+ E
Sbjct: 65 VMVSKPAPYWEGTAVINGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRIEE 123
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
F N +++A S+DS HLAW G P + P++ D + ++ G+
Sbjct: 124 FKSINTEVVACSVDSQFTHLAWINTPRRQGGLGP---IKIPLLSDLTHQISKDYGVY--- 177
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
++ G T R +FI L+ L GR+ DE LR++ + Q T P
Sbjct: 178 -LEDSGH--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAG 234
Query: 709 WKNGDSVMV 735
WK G ++
Sbjct: 235 WKPGSETII 243
>ref|XP_548896.2| PREDICTED: similar to Peroxiredoxin 4 (Prx-IV) (Thioredoxin
peroxidase AO372) (Thioredoxin-dependent peroxide
reductase A0372) (Antioxidant enzyme AOE372) (AOE37-2)
isoform 1 [Canis familiaris].
Length = 272
Score = 66.6 bits (161), Expect = 5e-11
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 4/183 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP +E I ++ D+ G + + F +P DFT VC TE+ EF N
Sbjct: 86 APYWEGTAVINGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINT 144
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A S+DS HLAW G P + P++ D + ++ G+ ++ G
Sbjct: 145 EVVACSVDSQFTHLAWINTPRRQGGLGP---IKIPLLSDLTHQISKDYGVY----LEDSG 197
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
T R +FI L+ L GR+ DE LR++ + Q T P WK G
Sbjct: 198 H--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDRHGEVCPAGWKPGSE 255
Query: 727 VMV 735
++
Sbjct: 256 TII 258
>ref|XP_535031.2| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 1 [Canis familiaris].
Length = 257
Score = 63.5 bits (153), Expect = 4e-10
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Frame = +1
Query: 199 APNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + + DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 70 APYFKGTAVVNGEFKDLTLDDFKG-RYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDVNC 128
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
++A+S+DS HLAW IN + ++ D ++ ++ G+L +G
Sbjct: 129 DVVAVSVDSHFTHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 179
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 180 PGIALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 238
Query: 727 VMVLPN 744
+ P+
Sbjct: 239 PTIKPH 244
>ref|XP_850180.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) [Canis familiaris].
Length = 269
Score = 62.4 bits (150), Expect = 9e-10
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 4/198 (2%)
Frame = +1
Query: 199 APNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + R + DF G + +LF +P FT VC TE+ + A EF N
Sbjct: 82 APYFKGTAVVNREFKDLTLDDFKG-RYLVLFFYPLHFTFVCPTEIVAFSDKAKEFHDVNC 140
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
++A+S+DS HLAW INA + ++ D ++ ++ + G+L +G
Sbjct: 141 DVVAVSVDSHFTHLAW---INALQKNGSLGHMNIALLSDLTKQISREYGVL------LEG 191
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
+ R +FI P+ +K + GR+ +E L ++ + P +W DS
Sbjct: 192 PGIALRGLFITDPNGVIKHLSVNDLPVGRSVEETLCLVKAFHFVETHGEVCPANW-TPDS 250
Query: 727 VMVLPNIPEEEAKKLFPK 780
++ P+ +K+ F K
Sbjct: 251 PIIKPD--PSASKEYFEK 266
>ref|XP_865127.1| PREDICTED: similar to Thioredoxin-dependent peroxide reductase,
mitochondrial precursor (Peroxiredoxin 3) (Antioxidant
protein 1) (AOP-1) (MER5 protein homolog) (HBC189) (PRX
III) isoform 2 [Canis familiaris].
Length = 260
Score = 61.2 bits (147), Expect = 2e-09
Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Frame = +1
Query: 199 APNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + + DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 70 APYFKGTAVVNGEFKDLTLDDFKG-RYLVLFFYPLDFTFVCPTEIVAFSDKAKEFHDVNC 128
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
++A+S+DS HLAW IN + ++ D ++ ++ G+L A QG
Sbjct: 129 DVVAVSVDSHFTHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVLS-AGFVLQG 184
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
P +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 185 SPSLG--LFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW-TPDS 241
Query: 727 VMVLPN 744
+ P+
Sbjct: 242 PTIKPH 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,691,987
Number of extensions: 1302333
Number of successful extensions: 4166
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4155
Number of HSP's successfully gapped: 11
Length of query: 417
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 312
Effective length of database: 15,374,224
Effective search space: 4796757888
Effective search space used: 4796757888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004896.1| peroxiredoxin-6 [Homo sapiens]. 430 e-120
Alignment gi|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens]. 85 2e-16
Alignment gi|NP_001189360.1| peroxiredoxin-1 [Homo sapiens]. 84 3e-16
Alignment gi|NP_002565.1| peroxiredoxin-1 [Homo sapiens]. 84 3e-16
Alignment gi|NP_859047.1| peroxiredoxin-1 [Homo sapiens]. 84 3e-16
Alignment gi|NP_859048.1| peroxiredoxin-1 [Homo sapiens]. 84 3e-16
Alignment gi|NP_006397.1| peroxiredoxin-4 [Homo sapiens]. 66 6e-11
Alignment gi|NP_054817.2| thioredoxin-dependent peroxide reductase, mitoc... 65 2e-10
Alignment gi|NP_006784.1| thioredoxin-dependent peroxide reductase, mitoc... 64 3e-10
Alignment gi|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens]. 53 7e-07
>ref|NP_004896.1| peroxiredoxin-6 [Homo sapiens].
Length = 224
Score = 430 bits (1106), Expect = e-120
Identities = 209/224 (93%), Positives = 218/224 (97%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLGD APNFEANTT+GRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNVK+IALSIDSVEDHLAWSKDINAYN EEP E LPFPIIDD++R+LAI LGMLDPA
Sbjct: 61 FAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPA 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKDE+GMPVTARVVF+FGPDKKLKLSILYPATTGRNFDEILRV+ISLQLTAEKRVATPVD
Sbjct: 121 EKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WK+GDSVMVLP IPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 224
>ref|NP_005800.3| peroxiredoxin-2 isoform a [Homo sapiens].
Length = 198
Score = 84.7 bits (208), Expect = 2e-16
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + ++ D+ G + +LF +P DFT VC TE+ + A
Sbjct: 4 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKG-KYVVLFFYPLDFTFVCPTEIIAFSNRA 62
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
+F K +++ +S+DS HLAW IN E L P++ D +R L+ G+L
Sbjct: 63 EDFRKLGCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLNIPLLADVTRRLSEDYGVL- 118
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G + R +FI L+ + GR+ DE LR++ + Q T E P
Sbjct: 119 ---KTDEG--IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCP 173
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + PN+ +++K+ F K
Sbjct: 174 AGWKPG-SDTIKPNV--DDSKEYFSK 196
>ref|NP_001189360.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 84.0 bits (206), Expect = 3e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGP---MNIPLVSDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|NP_002565.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 84.0 bits (206), Expect = 3e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGP---MNIPLVSDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|NP_859047.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 84.0 bits (206), Expect = 3e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGP---MNIPLVSDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|NP_859048.1| peroxiredoxin-1 [Homo sapiens].
Length = 199
Score = 84.0 bits (206), Expect = 3e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L D G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGHPAPNFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P++ D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGP---MNIPLVSDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--QKSKEYFSK 197
>ref|NP_006397.1| peroxiredoxin-4 [Homo sapiens].
Length = 271
Score = 66.2 bits (160), Expect = 6e-11
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP +E I ++ D+ G + + F +P DFT VC TE+ EF N
Sbjct: 85 APYWEGTAVIDGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINT 143
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A S+DS HLAW G P + P++ D + ++ G+ ++ G
Sbjct: 144 EVVACSVDSQFTHLAWINTPRRQGGLGP---IRIPLLSDLTHQISKDYGVY----LEDSG 196
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
T R +FI L+ L GR+ DE LR++ + Q T + P WK G
Sbjct: 197 H--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 254
Query: 727 VMV 735
++
Sbjct: 255 TII 257
>ref|NP_054817.2| thioredoxin-dependent peroxide reductase, mitochondrial isoform b
[Homo sapiens].
Length = 238
Score = 64.7 bits (156), Expect = 2e-10
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Frame = +1
Query: 196 EAPNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN 363
+AP F+ + + DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 50 QAPYFKGTAVVNGEFKDLSLDDFKG-KYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVN 108
Query: 364 VKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQ 543
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +
Sbjct: 109 CEVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LE 159
Query: 544 GMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGD 723
G + R +FI P+ +K + GR+ +E LR++ + Q P +W D
Sbjct: 160 GSGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANW-TPD 218
Query: 724 SVMVLPN 744
S + P+
Sbjct: 219 SPTIKPS 225
>ref|NP_006784.1| thioredoxin-dependent peroxide reductase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 256
Score = 63.9 bits (154), Expect = 3e-10
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 4/186 (2%)
Frame = +1
Query: 199 APNFEANTTIGR----IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + + DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 69 APYFKGTAVVNGEFKDLSLDDFKG-KYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNC 127
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +G
Sbjct: 128 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNIALLSDLTKQISRDYGVL------LEG 178
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
+ R +FI P+ +K + GR+ +E LR++ + Q P +W DS
Sbjct: 179 SGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQYVETHGEVCPANW-TPDS 237
Query: 727 VMVLPN 744
+ P+
Sbjct: 238 PTIKPS 243
>ref|NP_859428.1| peroxiredoxin-2 isoform c [Homo sapiens].
Length = 142
Score = 52.8 bits (125), Expect = 7e-07
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + ++ D+ G + +LF +P DFT VC TE+ + A
Sbjct: 4 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKG-KYVVLFFYPLDFTFVCPTEIIAFSNRA 62
Query: 343 PEFAKRNVKMIALSIDSVEDHLAW 414
+F K +++ +S+DS HLAW
Sbjct: 63 EDFRKLGCEVLGVSVDSQFTHLAW 86
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,925,981
Number of extensions: 1285321
Number of successful extensions: 3759
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3749
Number of HSP's successfully gapped: 10
Length of query: 417
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 312
Effective length of database: 14,835,944
Effective search space: 4628814528
Effective search space used: 4628814528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mu... 415 e-116
Alignment gi|NP_031479.1| peroxiredoxin-6 [Mus musculus]. 411 e-115
Alignment gi|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus muscul... 382 e-106
Alignment gi|NP_035693.3| peroxiredoxin-2 [Mus musculus]. 85 1e-16
Alignment gi|NP_035164.1| peroxiredoxin-1 [Mus musculus]. 83 5e-16
Alignment gi|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculu... 75 8e-14
Alignment gi|NP_058044.1| peroxiredoxin-4 [Mus musculus]. 67 3e-11
Alignment gi|NP_031478.1| thioredoxin-dependent peroxide reductase, mitoc... 62 9e-10
>ref|XP_003086860.1| PREDICTED: peroxiredoxin-6-like, partial [Mus musculus].
Length = 244
Score = 415 bits (1066), Expect = e-116
Identities = 203/228 (89%), Positives = 210/228 (92%)
Frame = +1
Query: 157 TAAAMPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAK 336
T AAMPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAK
Sbjct: 17 TTAAMPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAK 76
Query: 337 LAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGM 516
LAPEFAKRNVK+IALSIDSVEDHLAWSKDINAYNGE P E LPFPIIDDK RDLAI LGM
Sbjct: 77 LAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGM 136
Query: 517 LDPAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVA 696
LDP EKD+ MPVTARVVFIFGPDKKLKLSILYPATT RNFDEILRV+ SLQLT K VA
Sbjct: 137 LDPVEKDDNNMPVTARVVFIFGPDKKLKLSILYPATTSRNFDEILRVVDSLQLTGTKPVA 196
Query: 697 TPVDWKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
TPVDWK G+SVMV+P + EEEAK+ FPKGVFTKELPSGKKYLRYTPQP
Sbjct: 197 TPVDWKKGESVMVVPTLSEEEAKQCFPKGVFTKELPSGKKYLRYTPQP 244
>ref|NP_031479.1| peroxiredoxin-6 [Mus musculus].
Length = 224
Score = 411 bits (1056), Expect = e-115
Identities = 201/224 (89%), Positives = 207/224 (92%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNVK+IALSIDSVEDHLAWSKDINAYNGE P E LPFPIIDDK RDLAI LGMLDP
Sbjct: 61 FAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPV 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKD MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRV+ SLQLT K VATPVD
Sbjct: 121 EKDANNMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WK G+SVMV+P + EEEAK+ FPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKKGESVMVVPTLSEEEAKQCFPKGVFTKELPSGKKYLRYTPQP 224
>ref|NP_796230.1| peroxiredoxin 6, related sequence 1 [Mus musculus].
Length = 224
Score = 382 bits (982), Expect = e-106
Identities = 183/224 (81%), Positives = 202/224 (90%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLG+EAP+FEANTTIGRIRFHDFLG+SWG+LFSHP+DFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGEEAPDFEANTTIGRIRFHDFLGNSWGMLFSHPKDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNVK+IALS+DSVEDHLAWSKDINAYNG PKE LPFPIIDDK RD++I MLDP
Sbjct: 61 FAKRNVKLIALSVDSVEDHLAWSKDINAYNGATPKEKLPFPIIDDKDRDISILFCMLDPV 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKD MP+TAR VFIFGPDKKLK+S+LYP +TGRNFDEILRVI SLQLT K VATPVD
Sbjct: 121 EKDANSMPLTARGVFIFGPDKKLKMSLLYPNSTGRNFDEILRVIDSLQLTETKPVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WK G+SVMVLP++PEEEAK+ FPKG+ T +LPSGK YLRYTPQP
Sbjct: 181 WKKGESVMVLPDLPEEEAKRCFPKGISTTKLPSGKNYLRYTPQP 224
>ref|NP_035693.3| peroxiredoxin-2 [Mus musculus].
Length = 198
Score = 84.7 bits (208), Expect = 1e-16
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F A + I+ D+ G + +LF +P DFT VC TE+ + A
Sbjct: 4 GNAQIGKSAPDFTATAVVDGAFKEIKLSDYRG-KYVVLFFYPLDFTFVCPTEIIAFSDHA 62
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
+F K +++ +S+DS HLAW IN E L P++ D ++ L+ G+L
Sbjct: 63 EDFRKLGCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLNIPLLADVTKSLSQNYGVL- 118
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K+++G + R +FI L+ + GR+ DE LR++ + Q T E P
Sbjct: 119 ---KNDEG--IAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCP 173
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + PN+ +++K+ F K
Sbjct: 174 AGWKPG-SDTIKPNV--DDSKEYFSK 196
>ref|NP_035164.1| peroxiredoxin-1 [Mus musculus].
Length = 199
Score = 82.8 bits (203), Expect = 5e-16
Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G APNF+A + +F D L + G + F +P DFT VC TE+ + A
Sbjct: 4 GNAKIGYPAPNFKATAVMPDGQFKDISLSEYKGKYVVFFFYPLDFTFVCPTEIIAFSDRA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+DS HLAW G P + P+I D R +A G+L
Sbjct: 64 DEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL- 119
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DEI+R++ + Q T + P
Sbjct: 120 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCP 174
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ ++K+ F K
Sbjct: 175 AGWKPG-SDTIKPDV--NKSKEYFSK 197
>ref|XP_003086229.1| PREDICTED: peroxiredoxin-2-like [Mus musculus].
Length = 198
Score = 75.5 bits (184), Expect = 8e-14
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANT----TIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLA 342
G +G P+F A T I+ D+ G + +LF +P D T VC TE+ + A
Sbjct: 4 GNAHIGKSTPDFTATAVVDGTFKEIKLSDYRG-KYMVLFFYPLDITFVCPTEIIAFSDHA 62
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
+F K +++ +S+DS H AW IN E L P++ D ++ L+ G+L
Sbjct: 63 EDFRKLGCEVLGVSVDSQFTHQAW---INTSRKEGGLGPLNIPLLADVTKSLSQNYGVL- 118
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K+++G + R +FI L+ + GR+ E LR++ + Q T E +P
Sbjct: 119 ---KNDEG--IAYRGLFIIDAKGVLRQITVNDLPVGRSVHEALRLVQAFQYTDEHGEVSP 173
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + PN+ + +K+ F K
Sbjct: 174 AGWKPG-SDTIKPNV--DYSKEYFSK 196
>ref|NP_058044.1| peroxiredoxin-4 [Mus musculus].
Length = 274
Score = 67.0 bits (162), Expect = 3e-11
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP +E I ++ D+ G + + F +P DFT VC TE+ EF N
Sbjct: 88 APYWEGTAVINGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINT 146
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A S+DS HLAW G P + P++ D + ++ G+ ++ G
Sbjct: 147 EVVACSVDSQFTHLAWINTPRRQGGLGP---IRIPLLSDLNHQISKDYGVY----LEDSG 199
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
T R +FI L+ L GR+ DE LR++ + Q T + P WK G
Sbjct: 200 H--TLRGLFIIDDKGVLRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 257
Query: 727 VMV 735
++
Sbjct: 258 TII 260
>ref|NP_031478.1| thioredoxin-dependent peroxide reductase, mitochondrial precursor
[Mus musculus].
Length = 257
Score = 62.0 bits (149), Expect = 9e-10
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 4/175 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP F+ + + DF G + +LF +P DFT VC TE+ + A EF N
Sbjct: 70 APYFKGTAVVNGEFKELSLDDFKG-KYLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNC 128
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A+S+DS HLAW IN + ++ D ++ ++ G+L +
Sbjct: 129 EVVAVSVDSHFSHLAW---INTPRKNGGLGHMNITLLSDITKQISRDYGVL------LES 179
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDW 711
+ R +FI P+ +K + GR+ +E LR++ + Q P +W
Sbjct: 180 AGIALRGLFIIDPNGVVKHLSVNDLPVGRSVEETLRLVKAFQFVETHGEVCPANW 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,751,412
Number of extensions: 1084051
Number of successful extensions: 3255
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3246
Number of HSP's successfully gapped: 8
Length of query: 417
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 313
Effective length of database: 12,493,815
Effective search space: 3910564095
Effective search space used: 3910564095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999573.1| peroxiredoxin-6 [Sus scrofa]. 456 e-128
Alignment gi|XP_003357591.1| PREDICTED: peroxiredoxin-6-like [Sus scrofa]. 284 6e-77
Alignment gi|XP_003130359.2| PREDICTED: peroxiredoxin-6-like [Sus scrofa]. 176 2e-44
Alignment gi|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa]. 88 1e-17
Alignment gi|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [S... 74 2e-13
Alignment gi|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [S... 73 3e-13
Alignment gi|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [S... 73 3e-13
Alignment gi|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [S... 73 3e-13
Alignment gi|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [S... 73 3e-13
Alignment gi|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa]. 67 3e-11
>ref|NP_999573.1| peroxiredoxin-6 [Sus scrofa].
Length = 224
Score = 456 bits (1172), Expect = e-128
Identities = 224/224 (100%), Positives = 224/224 (100%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 528
FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA
Sbjct: 61 FAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPA 120
Query: 529 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 708
EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD
Sbjct: 121 EKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVD 180
Query: 709 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 840
WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
Sbjct: 181 WKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP 224
>ref|XP_003357591.1| PREDICTED: peroxiredoxin-6-like [Sus scrofa].
Length = 201
Score = 284 bits (727), Expect = 6e-77
Identities = 140/142 (98%), Positives = 142/142 (100%)
Frame = +1
Query: 415 SKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKK 594
++DINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKK
Sbjct: 60 AQDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKK 119
Query: 595 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAKKLF 774
LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAKKLF
Sbjct: 120 LKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAKKLF 179
Query: 775 PKGVFTKELPSGKKYLRYTPQP 840
PKGVFTKELPSGKKYLRYTPQP
Sbjct: 180 PKGVFTKELPSGKKYLRYTPQP 201
>ref|XP_003130359.2| PREDICTED: peroxiredoxin-6-like [Sus scrofa].
Length = 96
Score = 176 bits (447), Expect = 2e-44
Identities = 84/84 (100%), Positives = 84/84 (100%)
Frame = +1
Query: 169 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 348
MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE
Sbjct: 1 MPGGLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPE 60
Query: 349 FAKRNVKMIALSIDSVEDHLAWSK 420
FAKRNVKMIALSIDSVEDHLAWSK
Sbjct: 61 FAKRNVKMIALSIDSVEDHLAWSK 84
>ref|XP_003123404.2| PREDICTED: peroxiredoxin-2-like [Sus scrofa].
Length = 198
Score = 87.8 bits (216), Expect = 1e-17
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP F+A + ++ D+ G + +LF +P DFT VC TE+ + A
Sbjct: 4 GNAHIGKPAPEFQATAVVNGAFKEVKLSDYKG-KYLVLFFYPLDFTFVCPTEIIAFSDRA 62
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF + +++ +S+DS HLAW IN E L P++ D +R+L++ G+L
Sbjct: 63 EEFHQLGCEVLGVSVDSQFTHLAW---INTPRKEGGLGPLKIPLLADVTRNLSLDYGVL- 118
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K+++G + R +FI L+ + GR+ DE LR++ + Q T E P
Sbjct: 119 ---KEDEG--IAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCP 173
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + PN+ +++K+ F K
Sbjct: 174 AGWKPG-SDTIKPNV--DDSKEYFSK 196
>ref|XP_003128090.1| PREDICTED: peroxiredoxin-1-like isoform 5 [Sus scrofa].
Length = 197
Score = 73.9 bits (180), Expect = 2e-13
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 4 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+D + W G P + P+I D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDLTS--VIWINTPKKQGGLGP---MNIPLISDPKRTIAQDYGVL- 117
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 118 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 172
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 173 AGWKPG-SDTIKPDV--QKSKEYFSK 195
>ref|XP_003128089.1| PREDICTED: peroxiredoxin-1-like isoform 4 [Sus scrofa].
Length = 202
Score = 73.2 bits (178), Expect = 3e-13
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 4 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+D + IN + + P+I D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVL- 122
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 123 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 177
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 178 AGWKPG-SDTIKPDV--QKSKEYFSK 200
>ref|XP_003128088.1| PREDICTED: peroxiredoxin-1-like isoform 3 [Sus scrofa].
Length = 202
Score = 73.2 bits (178), Expect = 3e-13
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 4 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+D + IN + + P+I D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVL- 122
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 123 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 177
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 178 AGWKPG-SDTIKPDV--QKSKEYFSK 200
>ref|XP_003128087.1| PREDICTED: peroxiredoxin-1-like isoform 2 [Sus scrofa].
Length = 202
Score = 73.2 bits (178), Expect = 3e-13
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 4 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+D + IN + + P+I D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVL- 122
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 123 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 177
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 178 AGWKPG-SDTIKPDV--QKSKEYFSK 200
>ref|XP_003128086.1| PREDICTED: peroxiredoxin-1-like isoform 1 [Sus scrofa].
Length = 202
Score = 73.2 bits (178), Expect = 3e-13
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 4/206 (1%)
Frame = +1
Query: 175 GGLLLGDEAPNFEANTTIGRIRFHDF-LGDSWG---ILFSHPRDFTPVCTTELGRAAKLA 342
G +G AP+F+A + +F D L D G + F +P DFT VC TE+ ++ A
Sbjct: 4 GNAKIGHRAPHFKATAVMPDGQFKDISLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSERA 63
Query: 343 PEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLD 522
EF K N ++I S+D + IN + + P+I D R +A G+L
Sbjct: 64 EEFKKLNCQVIGASVDLTSVIWLGNLWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVL- 122
Query: 523 PAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATP 702
K ++G ++ R +FI L+ + GR+ DE LR++ + Q T + P
Sbjct: 123 ---KADEG--ISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCP 177
Query: 703 VDWKNGDSVMVLPNIPEEEAKKLFPK 780
WK G S + P++ +++K+ F K
Sbjct: 178 AGWKPG-SDTIKPDV--QKSKEYFSK 200
>ref|XP_001927404.1| PREDICTED: peroxiredoxin-4 [Sus scrofa].
Length = 272
Score = 66.6 bits (161), Expect = 3e-11
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 4/183 (2%)
Frame = +1
Query: 199 APNFEANTTIG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNV 366
AP +E I ++ D+ G + + F +P DFT VC TE+ EF N
Sbjct: 86 APYWEGTAVINGEFKELKLTDYRG-KYLVFFFYPLDFTFVCPTEIIAFGDRIEEFRSINT 144
Query: 367 KMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQG 546
+++A S+DS HLAW G P + P++ D + ++ G+ ++ G
Sbjct: 145 EVVACSVDSQFTHLAWINTPRRQGGLGP---IRIPLLSDLNHQISKDYGVY----LEDSG 197
Query: 547 MPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDS 726
T R +FI L+ L GR+ DE LR++ + Q T + P WK G
Sbjct: 198 H--TLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSE 255
Query: 727 VMV 735
++
Sbjct: 256 TII 258
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,529,997
Number of extensions: 890475
Number of successful extensions: 2575
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2564
Number of HSP's successfully gapped: 11
Length of query: 417
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 316
Effective length of database: 8,829,335
Effective search space: 2790069860
Effective search space used: 2790069860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001930
(1251 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 942 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 942 bits (475), Expect = 0.0
Identities = 481/483 (99%)
Strand = Plus / Plus
Query: 713 agaatggagacagcgtgatggtccttccaaatatccctgaagaggaagccaaaaaacttt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502098 agaatggagacagcgtgatggtccttccaaatatccctgaagaggaagccaaaaaacttt 127502157
Query: 773 tccctaaaggagtcttcaccaaagagctcccatctggcaagaaatacctccgttacacac 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502158 tccctaaaggagtcttcaccaaagagctcccatctggcaagaaatacctccgttacacac 127502217
Query: 833 cccagccataggctctccaaggagttggtgctggagctgctcacttagcaccatgagcca 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502218 cccagccataggctctccaaggagttggtgctggagctgctcacttagcaccatgagcca 127502277
Query: 893 gaggatgccagcagcccctctcattttcctgcagcagttccataaaaacatcctggtgtg 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502278 gaggatgccagcagcccctctcattttcctgcagcagttccataaaaacatcctggtgtg 127502337
Query: 953 atctcagccaaggtctttaggttgctatactactagcttattaaatgaaaatggcactaa 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502338 atctcagccaaggtctttaggttgctatactactagcttattaaatgaaaatggcactaa 127502397
Query: 1013 aaattccttgggaatctttgctctgtgccttcagcagcattctcttctcttcacctatca 1072
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502398 aaattccttgggattctttgctctgtgccttcagcagcattctcttctcttcacctatca 127502457
Query: 1073 gctctctgccaactctctgaaatgtgaggctcatcttgttggatctctgcagggtcaata 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127502458 gctctctgccaactctctgaaatgtgaggctcatcttgttggatctctgcagggtcaata 127502517
Query: 1133 agatggtatcagtttatggttgaaagaaatcggctttgctccatcaaagattgactatca 1192
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 127502518 agatggtatcagtttatggttgaaagaaatcggctttgctccatcagagattgactatca 127502577
Query: 1193 ggc 1195
|||
Sbjct: 127502578 ggc 127502580
Score = 383 bits (193), Expect = e-103
Identities = 199/201 (99%)
Strand = Plus / Plus
Query: 63 ttgaagccctttttattcctccccgcaacacctacaaggctagaaccagccatccgttag 122
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127491838 ttgaagccccatttattcctccccgcaacacctacaaggctagaaccagccatccgttag 127491897
Query: 123 ctgtcgctgctgggcttcttcatcttcccgcgtcactgctgccgccatgcccggaggtct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127491898 ctgtcgctgctgggcttcttcatcttcccgcgtcactgctgccgccatgcccggaggtct 127491957
Query: 183 gcttctcggggacgaggctcccaacttcgaagccaatactaccatcggccgcatccgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127491958 gcttctcggggacgaggctcccaacttcgaagccaatactaccatcggccgcatccgttt 127492017
Query: 243 ccacgactttctgggagactc 263
|||||||||||||||||||||
Sbjct: 127492018 ccacgactttctgggagactc 127492038
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 264 atggggcattcttttctcccaccctcgggacttcaccccagtgtgcaccacagagcttgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127495722 atggggcattcttttctcccaccctcgggacttcaccccagtgtgcaccacagagcttgg 127495781
Query: 324 cagagcggccaagctggcaccagaatttgccaagaggaatgttaagatgattgccctttc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127495782 cagagcggccaagctggcaccagaatttgccaagaggaatgttaagatgattgccctttc 127495841
Query: 384 aatagacagtgtcgaagaccatcttgcctggagcaagg 421
||||||||||||||||||||||||||||||||||||||
Sbjct: 127495842 aatagacagtgtcgaagaccatcttgcctggagcaagg 127495879
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 419 aggatatcaatgcttacaatggtgaggagcccaaggaaacgttaccttttcccatcattg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127499519 aggatatcaatgcttacaatggtgaggagcccaaggaaacgttaccttttcccatcattg 127499578
Query: 479 atgataagagtcgggaccttgccatccagttgggtatgctagacccagcagaaaaggacg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127499579 atgataagagtcgggaccttgccatccagttgggtatgctagacccagcagaaaaggacg 127499638
Query: 539 aacagggcatgcctgtgacagctcgtgtggt 569
|||||||||||||||||||||||||||||||
Sbjct: 127499639 aacagggcatgcctgtgacagctcgtgtggt 127499669
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 567 ggtatttatttttggtcccgataaaaagctgaaactgtccatcctctacccagctaccac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127500421 ggtatttatttttggtcccgataaaaagctgaaactgtccatcctctacccagctaccac 127500480
Query: 627 tggcagaaactttgatgagattctcagagtaattatctctctccagctgacagcagaaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127500481 tggcagaaactttgatgagattctcagagtaattatctctctccagctgacagcagaaaa 127500540
Query: 687 gagggttgccactccggttgactggaag 714
||||||||||||||||||||||||||||
Sbjct: 127500541 gagggttgccactccggttgactggaag 127500568
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,531,671
Number of extensions: 182
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 1251
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1230
Effective length of database: 2,808,413,156
Effective search space: 3454348181880
Effective search space used: 3454348181880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)