Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 294 9e-80
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 273 2e-73
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 249 2e-66
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 249 3e-66
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 189 5e-48
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 189 5e-48
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 178 7e-45
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 178 7e-45
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 178 9e-45
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 178 9e-45
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 294 bits (753), Expect = 9e-80
Identities = 174/275 (63%), Positives = 179/275 (65%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEEELRTMDQALKSLMASEEEYST TRAE
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ + + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELD 275
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 273 bits (698), Expect = 2e-73
Identities = 158/277 (57%), Positives = 175/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENAIDR +C TEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A+ E+YS TRAE
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAER+VAKLEKTIDDLEE LA AKEENV +HQTLDQT
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQT 277
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 249 bits (637), Expect = 2e-66
Identities = 149/275 (54%), Positives = 168/275 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+ + LKSL A E+YS TRAE
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ L + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 249 bits (636), Expect = 3e-66
Identities = 149/275 (54%), Positives = 167/275 (60%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R TEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 189 bits (479), Expect = 5e-48
Identities = 111/229 (48%), Positives = 138/229 (60%), Gaps = 7/229 (3%)
Frame = +2
Query: 353 EVEKYSESVKDAQEKLEQAEKKAT-------DAEADVASLNRRIQLVEEELDRAQERXXX 511
+++ + DAQE+ E+ +++ AEA+VASLNRRIQLVEEELDRAQER
Sbjct: 13 KIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQERLAT 72
Query: 512 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARK 691
RGMKVIEN+A+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARK
Sbjct: 73 ALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARK 132
Query: 692 LVIXXXXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXX 871
LVI +++E+++ MDQ LK L A+EE+YS
Sbjct: 133 LVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEIKIL 192
Query: 872 XXXXXXXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAER VAKLEKTIDDLE+ L KEE++ + LDQT
Sbjct: 193 TDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQT 241
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 189 bits (479), Expect = 5e-48
Identities = 111/229 (48%), Positives = 138/229 (60%), Gaps = 7/229 (3%)
Frame = +2
Query: 353 EVEKYSESVKDAQEKLEQAEKKAT-------DAEADVASLNRRIQLVEEELDRAQERXXX 511
+++ + DAQE+ E+ +++ AEA+VASLNRRIQLVEEELDRAQER
Sbjct: 13 KIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVEEELDRAQERLAT 72
Query: 512 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARK 691
RGMKVIEN+A+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARK
Sbjct: 73 ALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARK 132
Query: 692 LVIXXXXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXX 871
LVI +++E+++ MDQ LK L A+EE+YS
Sbjct: 133 LVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEIKIL 192
Query: 872 XXXXXXXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAER VAKLEKTIDDLE+ L KEE++ + LDQT
Sbjct: 193 TDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQT 241
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 178 bits (452), Expect = 7e-45
Identities = 107/224 (47%), Positives = 131/224 (58%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+ + + E K Q+K++ AEA+V SLNRRIQLVEEEL+RAQER
Sbjct: 18 QQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLATALQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
R MKVIEN+A+KDEEKMELQE+QLKEAKHIAE++ RKYEEVARKLVI
Sbjct: 78 EEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
++ E++R MDQ LK L A+EE+YS
Sbjct: 138 GDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQKEDKYEEEIKILTEKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLE+ L KEE++ + L+QT
Sbjct: 198 EAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQT 241
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 178 bits (452), Expect = 7e-45
Identities = 107/224 (47%), Positives = 131/224 (58%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+ + + E K Q+K++ AEA+V SLNRRIQLVEEEL+RAQER
Sbjct: 18 QQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLATALQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
R MKVIEN+A+KDEEKMELQE+QLKEAKHIAE++ RKYEEVARKLVI
Sbjct: 78 EEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
++ E++R MDQ LK L A+EE+YS
Sbjct: 138 GDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQKEDKYEEEIKILTEKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLE+ L KEE++ + L+QT
Sbjct: 198 EAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQT 241
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 178 bits (451), Expect = 9e-45
Identities = 108/224 (48%), Positives = 130/224 (58%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+ + + E K Q+K+E AEA+V SLNRRIQLVEEEL+RAQER
Sbjct: 18 QQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLATELQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
R MKVIEN+A+KDEEKMELQE+QLKEAKHIAE++ RKYEEVARKLVI
Sbjct: 78 EEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
++ E+ R MDQ LK L A+EE+YS
Sbjct: 138 GDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKILTDKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLE+ L KEE++ + L+QT
Sbjct: 198 EAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQT 241
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 178 bits (451), Expect = 9e-45
Identities = 108/224 (48%), Positives = 130/224 (58%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+ + + E K Q+K+E AEA+V SLNRRIQLVEEEL+RAQER
Sbjct: 18 QQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLATELQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
R MKVIEN+A+KDEEKMELQE+QLKEAKHIAE++ RKYEEVARKLVI
Sbjct: 78 EEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
++ E+ R MDQ LK L A+EE+YS
Sbjct: 138 GDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQKEDKYEEEIKILTDKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLE+ L KEE++ + L+QT
Sbjct: 198 EAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQT 241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,923,219
Number of extensions: 714388
Number of successful extensions: 4641
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4549
Number of HSP's successfully gapped: 14
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538720.2| PREDICTED: similar to tropomyosin 2 (beta) isof... 327 1e-89
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 304 1e-82
Alignment gi|XP_866436.1| PREDICTED: similar to Tropomyosin beta chain (T... 294 9e-80
Alignment gi|XP_866557.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 293 3e-79
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 280 1e-75
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 276 3e-74
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 271 7e-73
Alignment gi|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (T... 271 9e-73
Alignment gi|XP_866596.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 252 7e-71
Alignment gi|XP_865860.1| PREDICTED: similar to tropomyosin 3, gamma isof... 261 7e-70
>ref|XP_538720.2| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 1 [Canis
familiaris].
Length = 284
Score = 327 bits (838), Expect = 1e-89
Identities = 190/277 (68%), Positives = 190/277 (68%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEEELRTMDQALKSLMASEEEYST TRAE
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 277
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 304 bits (778), Expect = 1e-82
Identities = 178/277 (64%), Positives = 182/277 (65%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A ++YST TRAE
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 277
>ref|XP_866436.1| PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2)
(Beta-tropomyosin) isoform 5 [Canis familiaris].
Length = 284
Score = 294 bits (753), Expect = 9e-80
Identities = 174/275 (63%), Positives = 179/275 (65%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEEELRTMDQALKSLMASEEEYST TRAE
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ + + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELD 275
>ref|XP_866557.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 14
[Canis familiaris].
Length = 326
Score = 293 bits (749), Expect = 3e-79
Identities = 167/226 (73%), Positives = 167/226 (73%)
Frame = +2
Query: 341 GTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXX 520
GTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 94 GTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQ 153
Query: 521 XXXXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI 700
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 154 KLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI 213
Query: 701 XXXXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXX 880
QLEEELRTMDQALKSLMASEEEYST
Sbjct: 214 LEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEK 273
Query: 881 XXXXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT
Sbjct: 274 LKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 319
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform 10
[Canis familiaris].
Length = 284
Score = 280 bits (717), Expect = 1e-75
Identities = 161/277 (58%), Positives = 179/277 (64%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 276 bits (706), Expect = 3e-74
Identities = 159/277 (57%), Positives = 176/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENAIDR +C GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A+ E+YS TRAE
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAER+VAKLEKTIDDLEE LA AKEENV +HQTLDQT
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQT 277
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 271 bits (694), Expect = 7e-73
Identities = 158/277 (57%), Positives = 175/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|XP_852943.1| PREDICTED: similar to Tropomyosin beta chain (Tropomyosin 2)
(Beta-tropomyosin) isoform 3 [Canis familiaris].
Length = 284
Score = 271 bits (693), Expect = 9e-73
Identities = 162/275 (58%), Positives = 171/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A ++YST TRAE
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ + + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELD 275
>ref|XP_866596.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 16
[Canis familiaris].
Length = 236
Score = 252 bits (644), Expect(2) = 7e-71
Identities = 146/213 (68%), Positives = 146/213 (68%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEE 826
QLEEELRTMDQALKSLMASEEE
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEE 213
Score = 34.7 bits (78), Expect(2) = 7e-71
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 837 KRINMKRRSNCWKRS 881
K+INMKRRSNCW+RS
Sbjct: 222 KKINMKRRSNCWRRS 236
>ref|XP_865860.1| PREDICTED: similar to tropomyosin 3, gamma isoform 21 [Canis
familiaris].
Length = 285
Score = 261 bits (668), Expect = 7e-70
Identities = 152/277 (54%), Positives = 174/277 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+++E++R MDQ LK L A+EE+YS TRAE
Sbjct: 182 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSVAKLEKTIDDLE+ L KEE++ + LDQT
Sbjct: 242 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQT 278
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,366,645
Number of extensions: 712603
Number of successful extensions: 5503
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 5065
Number of HSP's successfully gapped: 96
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 325 4e-89
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 280 1e-75
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 276 3e-74
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 271 6e-73
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 270 2e-72
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 260 1e-69
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 251 7e-67
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 249 3e-66
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 246 2e-65
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 238 1e-62
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 325 bits (834), Expect = 4e-89
Identities = 189/277 (68%), Positives = 190/277 (68%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVK+AQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEEELRTMDQALKSLMASEEEYST TRAE
Sbjct: 181 ERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT
Sbjct: 241 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 277
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 280 bits (717), Expect = 1e-75
Identities = 161/277 (58%), Positives = 179/277 (64%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 276 bits (705), Expect = 3e-74
Identities = 159/277 (57%), Positives = 175/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENAIDR +C GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE +KDAQEKLE EKKA+DAE DVA+LNRRIQLVEEELDRAQER
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A+ E+YS TRAE
Sbjct: 181 ERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAER+VAKLEKTIDDLEE LA AKEENV +HQTLDQT
Sbjct: 241 FAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQT 277
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 271 bits (694), Expect = 6e-73
Identities = 158/277 (57%), Positives = 175/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 270 bits (689), Expect = 2e-72
Identities = 161/275 (58%), Positives = 171/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVK+AQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A ++YST TRAE
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ + + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELD 275
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 260 bits (665), Expect = 1e-69
Identities = 153/275 (55%), Positives = 172/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 251 bits (642), Expect = 7e-67
Identities = 150/275 (54%), Positives = 168/275 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 249 bits (637), Expect = 3e-66
Identities = 149/275 (54%), Positives = 168/275 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 181
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+ + LKSL A E+YS TRAE
Sbjct: 182 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 241
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ L + K + I + LD
Sbjct: 242 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD 276
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 246 bits (629), Expect = 2e-65
Identities = 146/277 (52%), Positives = 167/277 (60%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R +EDE ++
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
E + A++ L AE+ A AEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 238 bits (606), Expect = 1e-62
Identities = 143/277 (51%), Positives = 163/277 (58%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R +EDE ++
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
E + A++ L AE+ A AEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,391,292
Number of extensions: 672444
Number of successful extensions: 4499
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4369
Number of HSP's successfully gapped: 16
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 280 1e-75
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 271 5e-73
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 271 7e-73
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 260 1e-69
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 260 2e-69
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 251 6e-67
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 250 1e-66
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 238 9e-63
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 211 7e-55
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 202 3e-52
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 280 bits (717), Expect = 1e-75
Identities = 161/277 (58%), Positives = 179/277 (64%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 271 bits (694), Expect = 5e-73
Identities = 158/277 (57%), Positives = 175/277 (63%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 271 bits (693), Expect = 7e-73
Identities = 162/275 (58%), Positives = 171/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
LEEEL+ + LKSL A ++YST TRAE
Sbjct: 181 ERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ + + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELD 275
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 260 bits (665), Expect = 1e-69
Identities = 153/275 (55%), Positives = 172/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
QLEE+LR MDQ LK+LMA+E++YS TRAE
Sbjct: 181 ERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 260 bits (664), Expect = 2e-69
Identities = 151/277 (54%), Positives = 173/277 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKEN +DR R GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+++E++R MDQ LK L A+EE+YS TRAE
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSVAKLEKTIDDLE+ L KEE++ + LDQT
Sbjct: 241 FAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQT 277
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 251 bits (642), Expect = 6e-67
Identities = 150/275 (54%), Positives = 168/275 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 250 bits (639), Expect = 1e-66
Identities = 148/267 (55%), Positives = 164/267 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEEN 988
FAERSV KLEK+IDDLE+ L E+N
Sbjct: 241 FAERSVTKLEKSIDDLEDQLYHQLEQN 267
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 238 bits (606), Expect = 9e-63
Identities = 142/277 (51%), Positives = 163/277 (58%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R +EDE ++
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
E + A++ L A++ A AEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
FAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 241 FAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 277
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 211 bits (538), Expect = 7e-55
Identities = 121/224 (54%), Positives = 140/224 (62%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+++ + E Q +L+Q K AEADVASLNRRIQLVEEELDRAQER
Sbjct: 18 QEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 78 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
QLEE+LR MDQ LK+LMA+E++YS
Sbjct: 138 SDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 198 EAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 241
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 202 bits (515), Expect = 3e-52
Identities = 118/224 (52%), Positives = 136/224 (60%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+++ + E Q +L+Q K AEADVASLNRRIQLVEEELDRAQER
Sbjct: 18 QEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERLATALQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 78 EEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
+LEEEL+T+ LKSL A E+YS
Sbjct: 138 SDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSV KLEK+IDDLEE +A AKEEN+ +HQ LDQT
Sbjct: 198 EAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQT 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,461,669
Number of extensions: 545059
Number of successful extensions: 3509
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 13
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 320 7e-88
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 254 8e-68
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 249 2e-66
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 248 5e-66
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 205 3e-53
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 193 2e-49
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 320 bits (821), Expect = 7e-88
Identities = 189/280 (67%), Positives = 190/280 (67%), Gaps = 3/280 (1%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENAIDR RC GTEDEVEKY
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMEL---QEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXX 718
RG+KVIENRAMKDEEKMEL QEMQLKEAKHIAEDSDRKYEEVARKLVI
Sbjct: 121 DESERGLKVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELE 180
Query: 719 XXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXT 898
QLEEELRTMDQALKSLMASEEEYST T
Sbjct: 181 RSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAET 240
Query: 899 RAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
RAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT
Sbjct: 241 RAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 280
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 254 bits (648), Expect = 8e-68
Identities = 149/275 (54%), Positives = 171/275 (62%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+++E++R MDQ LK L A+EE+YS TRAE
Sbjct: 181 ERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ L + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD 275
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 249 bits (637), Expect = 2e-66
Identities = 149/275 (54%), Positives = 168/275 (61%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
M+AIKKKMQMLKLDKENA+DR R GTEDE++KY
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE++KDAQEKLE AEKKA DAEA+VASLNRRIQLVEEELDRAQER
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+ + LKSL A E+YS TRAE
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSVAKLEKTIDDLE+ L + K + I + LD
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 248 bits (633), Expect = 5e-66
Identities = 149/275 (54%), Positives = 166/275 (60%)
Frame = +2
Query: 188 MDAIKKKMQMLKLDKENAIDRXXXXXXXXXXXXXRCXXXXXXXXXXXXXXXGTEDEVEKY 367
MDAIKKKMQMLKLDKENA+DR R TEDE++KY
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 368 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 547
SE+ KDAQEKLE AEKKATDAEADVASLNRRIQLVEEELDRAQER
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 548 XXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXXXXXXXXX 727
RGMKVIE+RA KDEEKME+QE+QLKEAKHIAED+DRKYEEVARKLVI
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 728 XXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXXXXXTRAE 907
+LEEEL+T+ LKSL A E+YS TRAE
Sbjct: 181 ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 908 FAERSVAKLEKTIDDLEETLASAKEENVEIHQTLD 1012
FAERSV KLEK+IDDLE+ L + K + I + LD
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 205 bits (522), Expect = 3e-53
Identities = 118/224 (52%), Positives = 138/224 (61%)
Frame = +2
Query: 347 EDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERXXXXXXXX 526
+ + ++ + + Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER
Sbjct: 18 QQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERLATALQKL 77
Query: 527 XXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVIXX 706
RGMKVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI
Sbjct: 78 EEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILE 137
Query: 707 XXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXXXXXXX 886
LEEEL+ + LKSL A+ E+YS
Sbjct: 138 GELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLK 197
Query: 887 XXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAER+VAKLEKTIDDLEE LA AKEENV +HQTLDQT
Sbjct: 198 EAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQT 241
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 193 bits (490), Expect = 2e-49
Identities = 115/229 (50%), Positives = 141/229 (61%), Gaps = 7/229 (3%)
Frame = +2
Query: 353 EVEKYSESVKDAQEKLE------QAEKKATD-AEADVASLNRRIQLVEEELDRAQERXXX 511
+++ + DA+E+ E + E++A + AEA+VASLNRRIQLVEEELDRAQER
Sbjct: 13 KIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLAT 72
Query: 512 XXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARK 691
RGMKVIENRA+KDEEKMELQE+QLKEAKHIAE++DRKYEEVARK
Sbjct: 73 ALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARK 132
Query: 692 LVIXXXXXXXXXXXXXXXXXXXXQLEEELRTMDQALKSLMASEEEYSTXXXXXXXXXXXX 871
LVI +++E++R MDQ LK L A+EE+YS
Sbjct: 133 LVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKIL 192
Query: 872 XXXXXXXXTRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQT 1018
TRAEFAERSVAKLEKTIDDLE+ L KEE++ + LDQT
Sbjct: 193 TDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQT 241
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,109,044
Number of extensions: 521826
Number of successful extensions: 2916
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 6
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001942
(1152 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 577 e-162
Sscrofa_Chr02 125 6e-26
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 98 1e-17
Sscrofa_Chr13 98 1e-17
Sscrofa_Chr04 98 1e-17
Sscrofa_Chr08 70 3e-09
>Sscrofa_Chr01
|| Length = 315321322
Score = 577 bits (291), Expect = e-162
Identities = 298/299 (99%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 3 aatgggggagggtcctggcccccggctccgcccggtccctcccagccttttaggcgcccg 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134738 aatgggggagggtcctg-cccccggctccgcccggtccctcccagccttttaggcgcccg 264134680
Query: 63 cgcggctgggacgtcccagccccgctaggtcctcctcgtccgccacccgtgcgcccagtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134679 cgcggctgggacgtcccagccccgctaggtcctcctcgtccgccacccgtgcgcccagtc 264134620
Query: 123 agcacagccagtcccgttcgcccggtccacactgcccgccggccggccggtccccaacag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134619 agcacagccagtcccgttcgcccggtccacactgcccgccggccggccggtccccaacag 264134560
Query: 183 caaccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134559 caaccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgcca 264134500
Query: 243 tcgaccgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcag 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134499 tcgaccgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcag 264134441
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 428 gccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctggac 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130989 gccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctggac 264130930
Query: 488 cgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgagaaggcagct 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130929 cgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgagaaggcagct 264130870
Query: 548 gatgagagtgaaag 561
||||||||||||||
Sbjct: 264130869 gatgagagtgaaag 264130856
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 299 cagctggaggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264134013 cagctggaggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtg 264133954
Query: 359 gaaaagtattccgaatcagtgaaggatgcccaggagaaactggagcaggctgaaaagaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264133953 gaaaagtattccgaatcagtgaaggatgcccaggagaaactggagcaggctgaaaagaag 264133894
Query: 419 gccaccgacg 428
||||||||||
Sbjct: 264133893 gccaccgacg 264133884
Score = 250 bits (126), Expect = 1e-63
Identities = 141/146 (96%)
Strand = Plus / Minus
Query: 958 agagaccttggccagtgccaaggaggagaacgtggagattcaccagaccctcgaccagac 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264127434 agagaccttggccagtgccaaggaggagaacgtggagattcaccagaccctcgaccagac 264127375
Query: 1018 cctgctggagctcaacaacctgtgagggctggtcctgccctggaccaagctataattgcc 1077
|||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct: 264127374 cctgctggagctcaacaacctgtgagggctggtcctgccctgagccaggctatagttgcc 264127315
Query: 1078 tccccagccaataaaactgttggtac 1103
||||||||||||||| ||||||||||
Sbjct: 264127314 tccccagccaataaacctgttggtac 264127289
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 560 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 620 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130705 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 264130646
Query: 680 gtg 682
|||
Sbjct: 264130645 gtg 264130643
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 749 agccgagccaggcagctggaagaggaactgcgaaccatggaccaggccctcaagtccctg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130338 agccgagccaggcagctggaagaggaactgcgaaccatggaccaggccctcaagtccctg 264130279
Query: 809 atggcctcagaggaggag 826
||||||||||||||||||
Sbjct: 264130278 atggcctcagaggaggag 264130261
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 678 aggtggccaggaagctggtgatcctggaaggagagctggagcgctcagaagagagagctg 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264130546 aggtggccaggaagctggtgatcctggaaggagagctggagcgctcagaagagagagctg 264130487
Query: 738 aggtggctgagag 750
|||||||||||||
Sbjct: 264130486 aggtggctgagag 264130474
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 888 aggctgagacccgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264129550 aggctgagacccgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcg 264129491
Query: 948 atgacctggaag 959
||||||||||||
Sbjct: 264129490 atgacctggaag 264129479
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 825 agtattccaccaaagaggataaatatgaagaggagatcaaactgctggaagagaagctaa 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264129761 agtattccaccaaagaggataaatatgaagaggagatcaaactgctggaagagaagctaa 264129702
Query: 885 aggagg 890
||||||
Sbjct: 264129701 aggagg 264129696
Score = 91.7 bits (46), Expect = 8e-16
Identities = 103/122 (84%)
Strand = Plus / Minus
Query: 560 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 619
||||| ||||| |||||||||| ||||||| ||||||||||| || ||||| | |||
Sbjct: 120223862 agaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaaattcag 120223803
Query: 620 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 679
||||| |||||||| || ||||||||||| ||||||||| | |||||||| ||||| |||
Sbjct: 120223802 gagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtatgaagag 120223743
Query: 680 gt 681
||
Sbjct: 120223742 gt 120223741
Score = 89.7 bits (45), Expect = 3e-15
Identities = 81/93 (87%)
Strand = Plus / Minus
Query: 185 accatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatc 244
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||| |
Sbjct: 120240069 accatggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttg 120240010
Query: 245 gaccgtgctgagcaggcggaggctgacaagaag 277
|| || || |||||||||||||| || ||||||
Sbjct: 120240009 gatcgagcggagcaggcggaggccgataagaag 120239977
Score = 67.9 bits (34), Expect = 1e-08
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 473 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 532
||||| ||||||||||| || |||||||| ||||| ||||| | || || || ||||||
Sbjct: 120225982 gaggaagagctggaccgtgcccaggagcgactggcaacagctttacagaaacttgaggag 120225923
Query: 533 gccgagaaggcagctgatgagagtga 558
|| ||||||||||| |||||||||||
Sbjct: 120225922 gctgagaaggcagcagatgagagtga 120225897
>Sscrofa_Chr02
|| Length = 162569375
Score = 125 bits (63), Expect = 6e-26
Identities = 108/123 (87%)
Strand = Plus / Plus
Query: 560 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 619
|||||||||||||| || |||||||| |||||||| |||||||| ||||||||| | |||
Sbjct: 61163820 agaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggagattcag 61163879
Query: 620 gagatgcagctgaaggaggccaagcacatcgctgaggattcagaccgcaaatatgaggag 679
||||||||||| || |||||||||||||| || ||||| | ||||||||||| ||||||
Sbjct: 61163880 gagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatacgaggag 61163939
Query: 680 gtg 682
|||
Sbjct: 61163940 gtg 61163942
Score = 119 bits (60), Expect = 4e-24
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 186 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 245
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 61150732 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 61150791
Query: 246 accgtgctgagcaggcggag 265
|||| || ||||||||||||
Sbjct: 61150792 accgggccgagcaggcggag 61150811
Score = 77.8 bits (39), Expect = 1e-11
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 473 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 532
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 61161383 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 61161442
Query: 533 gccgagaaggcagctgatgagag 555
|| || ||||| || ||||||||
Sbjct: 61161443 gcagaaaaggctgcagatgagag 61161465
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 97.6 bits (49), Expect = 1e-17
Identities = 106/125 (84%)
Strand = Plus / Minus
Query: 431 gaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctggaccgg 490
||||| || ||||||||| ||||||| | || ||||| || || ||||||||||||||
Sbjct: 2091 gaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagctggaccgc 2032
Query: 491 gcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgagaaggcagctgat 550
|| || ||||| |||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct: 2031 gctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagctgctgat 1972
Query: 551 gagag 555
|||||
Sbjct: 1971 gagag 1967
Score = 73.8 bits (37), Expect = 2e-10
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 188 atggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgc 240
||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 15261 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaatgc 15209
Score = 71.9 bits (36), Expect = 7e-10
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 326 cagaagaagctgaaagggacggaggatgaggtggaaaagtattccgaatcagtgaaggat 385
|||||||| || |||||||| ||||||||| |||| || ||||| ||| | ||||||||
Sbjct: 14331 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 14272
Query: 386 gcccaggagaaactggagcaggctgaaaagaa 417
||||||||||| ||||||| ||| || |||||
Sbjct: 14271 gcccaggagaagctggagctggcagagaagaa 14240
>Sscrofa_Chr13
|| Length = 218635234
Score = 97.6 bits (49), Expect = 1e-17
Identities = 115/137 (83%)
Strand = Plus / Plus
Query: 476 gaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggcc 535
|||||||||||| || || ||||| |||||||| || |||||||||||||| || ||
Sbjct: 43190634 gaggagctggactttgctcaagagcgcctggccactgctctgcaaaagctggaagaagca 43190693
Query: 536 gagaaggcagctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatgaag 595
||||| || ||||| |||||||| ||||| |||||||| ||||||||| ||||| | ||
Sbjct: 43190694 gagaaagctgctgacgagagtgagagaggtatgaaggttattgaaaactgagccttaaaa 43190753
Query: 596 gatgaggaaaagatgga 612
||||||||||| |||||
Sbjct: 43190754 gatgaggaaaaaatgga 43190770
>Sscrofa_Chr04
|| Length = 143465943
Score = 97.6 bits (49), Expect = 1e-17
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 431 gaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctggaccgg 490
||||| || ||||||||| ||||||| | || ||||| || || ||||||||||||||
Sbjct: 104473256 gaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagctggaccgc 104473315
Query: 491 gcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgagaaggcagctgat 550
|| || ||||| |||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct: 104473316 gctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagctgctgat 104473375
Query: 551 gagag 555
|||||
Sbjct: 104473376 gagag 104473380
Score = 73.8 bits (37), Expect = 2e-10
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 188 atggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgc 240
||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 104459762 atggaggccatcaagaaaaagatgcagatgctgaagttggacaaggagaatgc 104459814
Score = 71.9 bits (36), Expect = 7e-10
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 326 cagaagaagctgaaagggacggaggatgaggtggaaaagtattccgaatcagtgaaggat 385
|||||||| || |||||||| ||||||||| |||| || ||||| ||| | ||||||||
Sbjct: 104460513 cagaagaaactaaaagggacagaggatgagctggacaaatattctgaagctctgaaggat 104460572
Query: 386 gcccaggagaaactggagcaggctgaaaagaa 417
||||||||||| ||||||| ||| || |||||
Sbjct: 104460573 gcccaggagaagctggagctggcagagaagaa 104460604
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 560 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 619
||||| |||||||||||||||||||||||| | || ||||||||||| ||||| || |||
Sbjct: 104475171 agaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatggaactccag 104475230
Query: 620 ga 621
||
Sbjct: 104475231 ga 104475232
>Sscrofa_Chr08
|| Length = 148491826
Score = 69.9 bits (35), Expect = 3e-09
Identities = 123/152 (80%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 459 gcattcagctagtagaggaggagctggaccgggcgcaggagcgtctggccacagccctgc 518
|||| ||||| || || |||||||||||| | || || ||| | ||||| || |||||||
Sbjct: 44747689 gcatccagctggttgaagaggagctggactgtgctcaagagtgcctggctactgccctgc 44747630
Query: 519 aaaagctggaggaggccgagaaggcagctgatgagagtgaaagag----gaatgaaggtc 574
||||||||||||| || ||||| | ||||||||| |||| |||| |||||||| |
Sbjct: 44747629 aaaagctggaggaagctgagaaatctgctgatgagggtgagagaggtatgaatgaagttt 44747570
Query: 575 attgaaaaccgagccatgaaggatgaggaaaa 606
|||||||||| |||| | || |||||||||||
Sbjct: 44747569 attgaaaaccaagccttaaaagatgaggaaaa 44747538
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,303,003
Number of extensions: 356
Number of successful extensions: 356
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 24
Length of query: 1152
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1131
Effective length of database: 2,808,413,156
Effective search space: 3176315279436
Effective search space used: 3176315279436
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)