Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070469.1| recombining binding protein suppressor of ha... 577 e-165
Alignment gi|NP_001179282.1| recombining binding protein suppressor of ha... 299 4e-81
Alignment gi|XP_002692522.1| PREDICTED: recombination signal binding prot... 299 4e-81
>ref|NP_001070469.1| recombining binding protein suppressor of hairless [Bos taurus].
Length = 487
Score = 577 bits (1488), Expect = e-165
Identities = 282/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 8 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 67
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 68 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 127
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 128 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 187
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 188 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 247
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 248 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 292
>ref|NP_001179282.1| recombining binding protein suppressor of hairless-like protein [Bos
taurus].
Length = 517
Score = 299 bits (765), Expect = 4e-81
Identities = 156/289 (53%), Positives = 201/289 (69%), Gaps = 11/289 (3%)
Frame = +1
Query: 448 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 627
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 628 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 786
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETE----RMYLCLSQKRI 1281
+IIRKV Q ALLD D+P+SQLHKCAF YLCL+ +++
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKV 335
>ref|XP_002692522.1| PREDICTED: recombination signal binding protein for immunoglobulin
kappa J region-like [Bos taurus].
Length = 517
Score = 299 bits (765), Expect = 4e-81
Identities = 156/289 (53%), Positives = 201/289 (69%), Gaps = 11/289 (3%)
Frame = +1
Query: 448 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 627
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 628 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 786
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETE----RMYLCLSQKRI 1281
+IIRKV Q ALLD D+P+SQLHKCAF YLCL+ +++
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKV 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,670,999
Number of extensions: 1185586
Number of successful extensions: 3762
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3731
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,207,134
Effective search space: 4574697148
Effective search space used: 4574697148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863769.1| PREDICTED: similar to recombining binding prote... 590 e-169
Alignment gi|XP_536269.2| PREDICTED: similar to recombining binding prote... 590 e-169
Alignment gi|XP_863791.1| PREDICTED: similar to recombining binding prote... 585 e-167
Alignment gi|XP_543016.2| PREDICTED: similar to recombining binding prote... 299 4e-81
Alignment gi|XP_863700.1| PREDICTED: similar to recombining binding prote... 107 2e-23
>ref|XP_863769.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 5 [Canis familiaris].
Length = 381
Score = 590 bits (1522), Expect = e-169
Identities = 288/291 (98%), Positives = 290/291 (99%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 588
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 60
Query: 589 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 768
LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD
Sbjct: 61 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 120
Query: 769 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 948
KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180
Query: 949 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 1128
SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 240
Query: 1129 TGMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
TGMALPRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 241 TGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 291
>ref|XP_536269.2| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 1 [Canis familiaris].
Length = 486
Score = 590 bits (1522), Expect = e-169
Identities = 288/291 (98%), Positives = 290/291 (99%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 588
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 60
Query: 589 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 768
LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD
Sbjct: 61 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 120
Query: 769 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 948
KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180
Query: 949 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 1128
SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 240
Query: 1129 TGMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
TGMALPRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 241 TGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 291
>ref|XP_863791.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 6 [Canis familiaris].
Length = 489
Score = 585 bits (1508), Expect = e-167
Identities = 288/294 (97%), Positives = 290/294 (98%), Gaps = 3/294 (1%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 588
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 60
Query: 589 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 768
LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD
Sbjct: 61 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 120
Query: 769 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFN 939
KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD LCIASGTKVALFN
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADCEFLCIASGTKVALFN 180
Query: 940 RLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLV 1119
RLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLV
Sbjct: 181 RLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLV 240
Query: 1120 CSVTGMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
CSVTGMALPRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 241 CSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 294
>ref|XP_543016.2| PREDICTED: similar to recombining binding protein L [Canis
familiaris].
Length = 517
Score = 299 bits (765), Expect = 4e-81
Identities = 157/284 (55%), Positives = 199/284 (70%), Gaps = 11/284 (3%)
Frame = +1
Query: 463 REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGC 642
RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K Q +
Sbjct: 54 REGVRQCLRQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVQGQGHQA 113
Query: 643 SEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKM 801
E C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF L +++
Sbjct: 114 GETGPTVCGYMGLDGASGSAAETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRLVLRL 173
Query: 802 FYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHV 981
+ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTRYL V
Sbjct: 174 VHRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSV 233
Query: 982 EGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIR 1161
E G F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP +IIR
Sbjct: 234 EDGAFVASARQWAAFTLHLADEHCSQG-DFPPREGYVRYGSLVQLVCTVTGITLPPMIIR 292
Query: 1162 KVD*QTALLDADDPVSQLHKCAFYLKETE----RMYLCLSQKRI 1281
KV Q ALLD D+P+SQLHKCAF YLCL+ ++
Sbjct: 293 KVAKQCALLDVDEPISQLHKCAFQFPGDSPGGVGTYLCLATDKV 336
>ref|XP_863700.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 2 [Canis familiaris].
Length = 55
Score = 107 bits (268), Expect = 2e-23
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 561
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,693,368
Number of extensions: 1220704
Number of successful extensions: 3777
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3753
Number of HSP's successfully gapped: 5
Length of query: 427
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 321
Effective length of database: 15,340,888
Effective search space: 4924425048
Effective search space used: 4924425048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976029.1| recombining binding protein suppressor of hairl... 589 e-168
Alignment gi|NP_976028.1| recombining binding protein suppressor of hairl... 578 e-165
Alignment gi|NP_056958.3| recombining binding protein suppressor of hairl... 576 e-164
Alignment gi|NP_005340.2| recombining binding protein suppressor of hairl... 576 e-164
Alignment gi|NP_055091.2| recombining binding protein suppressor of hairl... 296 2e-80
>ref|NP_976029.1| recombining binding protein suppressor of hairless isoform 4 [Homo
sapiens].
Length = 486
Score = 589 bits (1518), Expect = e-168
Identities = 287/291 (98%), Positives = 290/291 (99%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 588
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 60
Query: 589 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 768
LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD
Sbjct: 61 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 120
Query: 769 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 948
KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180
Query: 949 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 1128
SQTVSTRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 240
Query: 1129 TGMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
TGMALPRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 241 TGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 291
>ref|NP_976028.1| recombining binding protein suppressor of hairless isoform 3 [Homo
sapiens].
Length = 485
Score = 578 bits (1489), Expect = e-165
Identities = 282/286 (98%), Positives = 285/286 (99%)
Frame = +1
Query: 424 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 603
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 5 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 64
Query: 604 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 783
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 65 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 124
Query: 784 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 963
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 125 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 184
Query: 964 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 1143
TRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 185 TRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 244
Query: 1144 PRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
PRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 245 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 290
>ref|NP_056958.3| recombining binding protein suppressor of hairless isoform 2 [Homo
sapiens].
Length = 487
Score = 576 bits (1484), Expect = e-164
Identities = 281/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 8 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 67
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 68 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 127
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 128 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 187
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 188 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 247
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 248 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 292
>ref|NP_005340.2| recombining binding protein suppressor of hairless isoform 1 [Homo
sapiens].
Length = 500
Score = 576 bits (1484), Expect = e-164
Identities = 281/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 21 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 80
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 81 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 140
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 141 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 200
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 201 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 260
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 261 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 305
>ref|NP_055091.2| recombining binding protein suppressor of hairless-like protein [Homo
sapiens].
Length = 517
Score = 296 bits (759), Expect = 2e-80
Identities = 156/291 (53%), Positives = 201/291 (69%), Gaps = 11/291 (3%)
Frame = +1
Query: 442 PPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKE 621
P + R +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 47 PEHTTILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPG 106
Query: 622 QMERDGCSEQESQPCAFIGIGN---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKH 780
Q + E C ++G+ + S E Q+LN E + + AKTLYISD+DKRKH
Sbjct: 107 QDQAHQAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKH 166
Query: 781 FMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 960
F L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTV
Sbjct: 167 FRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTV 226
Query: 961 STRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMA 1140
STRYL VE G F AS++QW AF +HL D ++G +F R+GY+ YG V+LVC+VTG+
Sbjct: 227 STRYLSVEDGAFVASARQWAAFTLHLADGHSAQG-DFPPREGYVRYGSLVQLVCTVTGIT 285
Query: 1141 LPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETE----RMYLCLSQKRI 1281
LP +IIRKV Q ALLD D+P+SQLHKCAF + YLCL+ +++
Sbjct: 286 LPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKV 336
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,043,422
Number of extensions: 1217276
Number of successful extensions: 3785
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3748
Number of HSP's successfully gapped: 5
Length of query: 427
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 322
Effective length of database: 14,835,944
Effective search space: 4777173968
Effective search space used: 4777173968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074397.1| recombining binding protein suppressor of ha... 579 e-165
Alignment gi|NP_001074396.1| recombining binding protein suppressor of ha... 577 e-165
Alignment gi|NP_033061.3| recombining binding protein suppressor of hairl... 577 e-165
Alignment gi|NP_033062.1| recombining binding protein suppressor of hairl... 300 1e-81
>ref|NP_001074397.1| recombining binding protein suppressor of hairless isoform 3 [Mus
musculus].
Length = 485
Score = 579 bits (1493), Expect = e-165
Identities = 283/286 (98%), Positives = 285/286 (99%)
Frame = +1
Query: 424 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 603
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 5 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 64
Query: 604 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 783
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 65 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 124
Query: 784 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 963
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 125 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 184
Query: 964 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 1143
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 185 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 244
Query: 1144 PRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
PRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 245 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 290
>ref|NP_001074396.1| recombining binding protein suppressor of hairless isoform 2 [Mus
musculus].
Length = 487
Score = 577 bits (1488), Expect = e-165
Identities = 282/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 8 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 67
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 68 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 127
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 128 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 187
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 188 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 247
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 248 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 292
>ref|NP_033061.3| recombining binding protein suppressor of hairless isoform 1 [Mus
musculus].
Length = 526
Score = 577 bits (1488), Expect = e-165
Identities = 282/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 47 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 106
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 107 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 166
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 167 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 226
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 227 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 286
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 287 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 331
>ref|NP_033062.1| recombining binding protein suppressor of hairless-like protein [Mus
musculus].
Length = 515
Score = 300 bits (769), Expect = 1e-81
Identities = 161/294 (54%), Positives = 204/294 (69%), Gaps = 13/294 (4%)
Frame = +1
Query: 439 RPPPKR--LTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKK 612
R PP+ + RE +R L++R +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+
Sbjct: 42 RSPPEHAIILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRV 101
Query: 613 KKEQMERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDK 771
K Q + +E C ++G+ S E Q+LN E + + AKTLYISD+DK
Sbjct: 102 KPMQDQALQSAETGPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKTLYISDADK 161
Query: 772 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 951
RKHF L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRS
Sbjct: 162 RKHFRLVLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRS 221
Query: 952 QTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVT 1131
QTVSTRYL VE G F AS++QW AF +HL D S+G +F ++GYI YG V+LVC+VT
Sbjct: 222 QTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQG-DFPPQEGYIRYGSLVQLVCTVT 280
Query: 1132 GMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKET----ERMYLCLSQKRI 1281
G+ LP +IIRKV Q ALLD D+P+SQLHKCAF YLCL+ +++
Sbjct: 281 GITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPSDTPGGAGTYLCLATEKV 334
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,167,576
Number of extensions: 1044217
Number of successful extensions: 3115
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3100
Number of HSP's successfully gapped: 4
Length of query: 427
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 323
Effective length of database: 12,493,815
Effective search space: 4035502245
Effective search space used: 4035502245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128938.2| PREDICTED: recombining binding protein suppr... 590 e-169
Alignment gi|XP_003356933.1| PREDICTED: recombining binding protein suppr... 579 e-165
Alignment gi|XP_003356932.1| PREDICTED: recombining binding protein suppr... 577 e-165
Alignment gi|XP_003356931.1| PREDICTED: recombining binding protein suppr... 577 e-165
>ref|XP_003128938.2| PREDICTED: recombining binding protein suppressor of hairless isoform
1 [Sus scrofa].
Length = 486
Score = 590 bits (1522), Expect = e-169
Identities = 288/291 (98%), Positives = 290/291 (99%)
Frame = +1
Query: 409 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 588
MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 1 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 60
Query: 589 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 768
LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD
Sbjct: 61 LMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSD 120
Query: 769 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 948
KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR
Sbjct: 121 KRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLR 180
Query: 949 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 1128
SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV
Sbjct: 181 SQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSV 240
Query: 1129 TGMALPRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
TGMALPRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 241 TGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 291
>ref|XP_003356933.1| PREDICTED: recombining binding protein suppressor of hairless isoform
4 [Sus scrofa].
Length = 532
Score = 579 bits (1493), Expect = e-165
Identities = 283/286 (98%), Positives = 285/286 (99%)
Frame = +1
Query: 424 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 603
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 52 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 111
Query: 604 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 783
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 112 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 171
Query: 784 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 963
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 172 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 231
Query: 964 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 1143
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 232 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 291
Query: 1144 PRLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
PRLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 292 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 337
>ref|XP_003356932.1| PREDICTED: recombining binding protein suppressor of hairless isoform
3 [Sus scrofa].
Length = 500
Score = 577 bits (1488), Expect = e-165
Identities = 282/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 21 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 80
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 81 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 140
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 141 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 200
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 201 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 260
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 261 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 305
>ref|XP_003356931.1| PREDICTED: recombining binding protein suppressor of hairless isoform
2 [Sus scrofa].
Length = 487
Score = 577 bits (1488), Expect = e-165
Identities = 282/285 (98%), Positives = 284/285 (99%)
Frame = +1
Query: 427 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 606
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 8 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 67
Query: 607 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 786
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 68 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 127
Query: 787 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 966
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 128 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 187
Query: 967 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 1146
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 188 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 247
Query: 1147 RLIIRKVD*QTALLDADDPVSQLHKCAFYLKETERMYLCLSQKRI 1281
RLIIRKVD QTALLDADDPVSQLHKCAFYLK+TERMYLCLSQ+RI
Sbjct: 248 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERI 292
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,949,822
Number of extensions: 754222
Number of successful extensions: 2459
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2437
Number of HSP's successfully gapped: 4
Length of query: 427
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 325
Effective length of database: 8,804,438
Effective search space: 2861442350
Effective search space used: 2861442350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001949
(1281 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 365 4e-98
>Sscrofa_Chr08
|| Length = 148491826
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 242 gtcattgaaattatgaaactatcattcaaatggaagcattatagttcttcggaaccatta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474537 gtcattgaaattatgaaactatcattcaaatggaagcattatagttcttcggaaccatta 20474596
Query: 302 tgatctcaaaaggaaaggagaatgatacagatacactggctgaggtgttgtgaggtgcat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474597 tgatctcaaaaggaaaggagaatgatacagatacactggctgaggtgttgtgaggtgcat 20474656
Query: 362 cgaagtgttccagcctgtggcttaccttaacatgttcttgaagtaccatggcgtggatta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20474657 cgaagtgttccagcctgtggcttaccttaacatgttcttgaagtaccatggcgtggatta 20474716
Query: 422 aaag 425
||||
Sbjct: 20474717 aaag 20474720
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 725 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524893 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 20524952
Query: 785 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524953 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 20525012
Query: 845 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525013 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 20525069
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 902 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528052 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 20528111
Query: 962 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528112 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 20528171
Query: 1022 cattttacattcatctct 1039
||||||||||||||||||
Sbjct: 20528172 cattttacattcatctct 20528189
Score = 252 bits (127), Expect = 4e-64
Identities = 148/158 (93%)
Strand = Plus / Plus
Query: 569 gccctcctccttgtgtgtatcttatgggcagtggatggaagnnnnnnnnngaacaaatgg 628
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20521088 gccctcctccttgtgtgtatcttatgggcagtggatggaagaaaaaaaaagaacaaatgg 20521147
Query: 629 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521148 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 20521207
Query: 689 gtgaccaggaaatgcaacagctgaacttggaaggaaag 726
|||||||||||||||| |||||||||||||||||||||
Sbjct: 20521208 gtgaccaggaaatgcagcagctgaacttggaaggaaag 20521245
Score = 226 bits (114), Expect = 2e-56
Identities = 126/130 (96%)
Strand = Plus / Plus
Query: 1152 gataatcaggaaggttgattagcagaccgcattattggatgcagatgatcctgtgtcaca 1211
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534104 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 20534163
Query: 1212 gctccataaatgtgcattttaccttaaagaaacagaaagaatgtacttgtgcctttctca 1271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20534164 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 20534223
Query: 1272 gaaaagaata 1281
||||||||
Sbjct: 20534224 agaaagaata 20534233
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1040 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528353 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 20528412
Query: 1100 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 1152
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528413 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 20528465
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 462 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513873 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 20513932
Query: 522 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 561
||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513933 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 20513972
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 atcgcttgggtaggtttccagggaaggcagcgagctggatcccctactccgctggcggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436524 atcgcttgggtaggtttccagggaaggcagcgagctggatcccctactccgctggcggcg 20436583
Query: 61 cgaggcgtctggctcttcgctgcggctgt 89
|||||||||||||||||||||||||||||
Sbjct: 20436584 cgaggcgtctggctcttcgctgcggctgt 20436612
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 184 tctcgcgagggttggagttttggcgagagtttgtggaagatggcgcctgttgtgacagg 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436707 tctcgcgagggttggagttttggcgagagtttgtggaagatggcgcctgttgtgacagg 20436765
Score = 85.7 bits (43), Expect = 5e-14
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 424 agaaaatttggtgagcggcctccacctaaacgacttactagggaagc 470
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20498409 agaaaatttggtgagcggcctccacctaaacgacttactaggtaagc 20498455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,887,339
Number of extensions: 232
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 11
Length of query: 1281
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1260
Effective length of database: 2,808,413,156
Effective search space: 3538600576560
Effective search space used: 3538600576560
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)