Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070469.1| recombining binding protein suppressor of ha... 596 e-170
Alignment gi|NP_001179282.1| recombining binding protein suppressor of ha... 302 3e-84
Alignment gi|XP_002692522.1| PREDICTED: recombination signal binding prot... 302 3e-84
>ref|NP_001070469.1| recombining binding protein suppressor of hairless [Bos taurus].
Length = 487
Score = 596 bits (1536), Expect = e-170
Identities = 293/306 (95%), Positives = 295/306 (96%)
Frame = +2
Query: 230 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 409
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 410 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 589
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 590 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 769
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 770 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 949
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 950 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHA 1129
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 1130 QKNQXK 1147
K K
Sbjct: 301 PKEPNK 306
>ref|NP_001179282.1| recombining binding protein suppressor of hairless-like protein [Bos
taurus].
Length = 517
Score = 302 bits (773), Expect(2) = 3e-84
Identities = 158/293 (53%), Positives = 203/293 (69%), Gaps = 11/293 (3%)
Frame = +2
Query: 272 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 451
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 452 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 610
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQKR*SSFR 1117
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ ++ F+
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQ 339
Score = 29.6 bits (65), Expect(2) = 3e-84
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 1093 SKKIIQFQATPCPKEPX*EMIN 1158
++K++QFQA+PCP E ++N
Sbjct: 332 TEKVVQFQASPCPNEANRALLN 353
>ref|XP_002692522.1| PREDICTED: recombination signal binding protein for immunoglobulin
kappa J region-like [Bos taurus].
Length = 517
Score = 302 bits (773), Expect(2) = 3e-84
Identities = 158/293 (53%), Positives = 203/293 (69%), Gaps = 11/293 (3%)
Frame = +2
Query: 272 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 451
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 452 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 610
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQKR*SSFR 1117
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ ++ F+
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQ 339
Score = 29.6 bits (65), Expect(2) = 3e-84
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 1093 SKKIIQFQATPCPKEPX*EMIN 1158
++K++QFQA+PCP E ++N
Sbjct: 332 TEKVVQFQASPCPNEANRALLN 353
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,409,645
Number of extensions: 1132738
Number of successful extensions: 4246
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4195
Number of HSP's successfully gapped: 5
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863769.1| PREDICTED: similar to recombining binding prote... 582 e-166
Alignment gi|XP_536269.2| PREDICTED: similar to recombining binding prote... 582 e-166
Alignment gi|XP_863791.1| PREDICTED: similar to recombining binding prote... 577 e-165
Alignment gi|XP_543016.2| PREDICTED: similar to recombining binding prote... 302 1e-84
Alignment gi|XP_863700.1| PREDICTED: similar to recombining binding prote... 95 1e-19
>ref|XP_863769.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 5 [Canis familiaris].
Length = 381
Score = 582 bits (1501), Expect = e-166
Identities = 286/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 305
>ref|XP_536269.2| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 1 [Canis familiaris].
Length = 486
Score = 582 bits (1501), Expect = e-166
Identities = 286/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 305
>ref|XP_863791.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 6 [Canis familiaris].
Length = 489
Score = 577 bits (1487), Expect = e-165
Identities = 286/302 (94%), Positives = 288/302 (95%), Gaps = 3/302 (0%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFNRLRSQT 781
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD LCIASGTKVALFNRLRSQT
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADCEFLCIASGTKVALFNRLRSQT 186
Query: 782 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 961
VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM
Sbjct: 187 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 246
Query: 962 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQ 1141
ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K
Sbjct: 247 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 306
Query: 1142 XK 1147
K
Sbjct: 307 NK 308
>ref|XP_543016.2| PREDICTED: similar to recombining binding protein L [Canis
familiaris].
Length = 517
Score = 302 bits (773), Expect(2) = 1e-84
Identities = 159/288 (55%), Positives = 201/288 (69%), Gaps = 11/288 (3%)
Frame = +2
Query: 287 REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGC 466
RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K Q +
Sbjct: 54 REGVRQCLRQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVQGQGHQA 113
Query: 467 SEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKM 625
E C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF L +++
Sbjct: 114 GETGPTVCGYMGLDGASGSAAETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRLVLRL 173
Query: 626 FYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHV 805
+ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTRYL V
Sbjct: 174 VHRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSV 233
Query: 806 EGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIR 985
E G F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP +IIR
Sbjct: 234 EDGAFVASARQWAAFTLHLADEHCSQG-DFPPREGYVRYGSLVQLVCTVTGITLPPMIIR 292
Query: 986 KVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQKR*SSFR 1117
KV KQ ALLD D+P+SQLHKCAF YLCL+ + F+
Sbjct: 293 KVAKQCALLDVDEPISQLHKCAFQFPGDSPGGVGTYLCLATDKVVQFQ 340
Score = 30.8 bits (68), Expect(2) = 1e-84
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 1099 KIIQFQATPCPKEPX*EMIN 1158
K++QFQA+PCPKE ++N
Sbjct: 335 KVVQFQASPCPKESNRALLN 354
>ref|XP_863700.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 2 [Canis familiaris].
Length = 55
Score = 94.7 bits (234), Expect = 1e-19
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 385
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,276,179
Number of extensions: 1167272
Number of successful extensions: 4303
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4254
Number of HSP's successfully gapped: 6
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056958.3| recombining binding protein suppressor of hairl... 594 e-170
Alignment gi|NP_005340.2| recombining binding protein suppressor of hairl... 583 e-166
Alignment gi|NP_976029.1| recombining binding protein suppressor of hairl... 581 e-166
Alignment gi|NP_976028.1| recombining binding protein suppressor of hairl... 581 e-166
Alignment gi|NP_055091.2| recombining binding protein suppressor of hairl... 300 4e-84
>ref|NP_056958.3| recombining binding protein suppressor of hairless isoform 2 [Homo
sapiens].
Length = 487
Score = 594 bits (1532), Expect = e-170
Identities = 292/306 (95%), Positives = 295/306 (96%)
Frame = +2
Query: 230 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 409
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 410 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 589
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 590 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 769
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 770 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 949
RSQTVSTRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 950 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHA 1129
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 1130 QKNQXK 1147
K K
Sbjct: 301 PKEPNK 306
>ref|NP_005340.2| recombining binding protein suppressor of hairless isoform 1 [Homo
sapiens].
Length = 500
Score = 583 bits (1503), Expect = e-166
Identities = 286/300 (95%), Positives = 289/300 (96%)
Frame = +2
Query: 248 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 427
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 20 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 79
Query: 428 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 607
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 80 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 139
Query: 608 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 787
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 140 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 199
Query: 788 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 967
TRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 200 TRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 259
Query: 968 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 260 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 319
>ref|NP_976029.1| recombining binding protein suppressor of hairless isoform 4 [Homo
sapiens].
Length = 486
Score = 581 bits (1497), Expect = e-166
Identities = 285/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 305
>ref|NP_976028.1| recombining binding protein suppressor of hairless isoform 3 [Homo
sapiens].
Length = 485
Score = 581 bits (1497), Expect = e-166
Identities = 285/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 304
>ref|NP_055091.2| recombining binding protein suppressor of hairless-like protein [Homo
sapiens].
Length = 517
Score = 300 bits (767), Expect(2) = 4e-84
Identities = 158/295 (53%), Positives = 203/295 (68%), Gaps = 11/295 (3%)
Frame = +2
Query: 266 PPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKE 445
P + R +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 47 PEHTTILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPG 106
Query: 446 QMERDGCSEQESQPCAFIGIGN---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKH 604
Q + E C ++G+ + S E Q+LN E + + AKTLYISD+DKRKH
Sbjct: 107 QDQAHQAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKH 166
Query: 605 FMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 784
F L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTV
Sbjct: 167 FRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTV 226
Query: 785 STRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMA 964
STRYL VE G F AS++QW AF +HL D ++G +F R+GY+ YG V+LVC+VTG+
Sbjct: 227 STRYLSVEDGAFVASARQWAAFTLHLADGHSAQG-DFPPREGYVRYGSLVQLVCTVTGIT 285
Query: 965 LPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQKR*SSFR 1117
LP +IIRKV KQ ALLD D+P+SQLHKCAF + YLCL+ ++ F+
Sbjct: 286 LPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQ 340
Score = 31.6 bits (70), Expect(2) = 4e-84
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 1093 SKKIIQFQATPCPKEPX*EMIN 1158
++K++QFQA+PCPKE ++N
Sbjct: 333 TEKVVQFQASPCPKEANRALLN 354
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,640,052
Number of extensions: 1160856
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4240
Number of HSP's successfully gapped: 6
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074396.1| recombining binding protein suppressor of ha... 598 e-171
Alignment gi|NP_033061.3| recombining binding protein suppressor of hairl... 587 e-168
Alignment gi|NP_001074397.1| recombining binding protein suppressor of ha... 585 e-167
Alignment gi|NP_033062.1| recombining binding protein suppressor of hairl... 305 4e-84
>ref|NP_001074396.1| recombining binding protein suppressor of hairless isoform 2 [Mus
musculus].
Length = 487
Score = 598 bits (1542), Expect = e-171
Identities = 294/306 (96%), Positives = 296/306 (96%)
Frame = +2
Query: 230 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 409
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 410 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 589
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 590 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 769
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 770 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 949
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 950 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHA 1129
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 1130 QKNQXK 1147
K Q K
Sbjct: 301 PKEQNK 306
>ref|NP_033061.3| recombining binding protein suppressor of hairless isoform 1 [Mus
musculus].
Length = 526
Score = 587 bits (1513), Expect = e-168
Identities = 288/300 (96%), Positives = 290/300 (96%)
Frame = +2
Query: 248 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 427
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 46 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 105
Query: 428 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 607
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 106 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 165
Query: 608 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 787
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 166 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 225
Query: 788 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 967
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 226 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 285
Query: 968 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K Q K
Sbjct: 286 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNK 345
>ref|NP_001074397.1| recombining binding protein suppressor of hairless isoform 3 [Mus
musculus].
Length = 485
Score = 585 bits (1507), Expect = e-167
Identities = 287/299 (95%), Positives = 289/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K Q K
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNK 304
>ref|NP_033062.1| recombining binding protein suppressor of hairless-like protein [Mus
musculus].
Length = 515
Score = 305 bits (780), Expect(2) = 4e-84
Identities = 165/301 (54%), Positives = 209/301 (69%), Gaps = 12/301 (3%)
Frame = +2
Query: 236 PVVTGKFGERPPPKRLT-REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 412
P + G + PP + RE +R L++R +QTV ILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 34 PSLLGSWTRSPPEHAIILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVY 93
Query: 413 LMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKT 571
L G GW+ K Q + +E C ++G+ S E Q+LN E + + AKT
Sbjct: 94 LAGPGWRVKPMQDQALQSAETGPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKT 153
Query: 572 LYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKV 751
LYISD+DKRKHF L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV
Sbjct: 154 LYISDADKRKHFRLVLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKV 213
Query: 752 ALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQT 931
+LFNRLRSQTVSTRYL VE G F AS++QW AF +HL D S+G +F ++GYI YG
Sbjct: 214 SLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQG-DFPPQEGYIRYGSL 272
Query: 932 VKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF-YLKDT---ERMYLCLSQK 1099
V+LVC+VTG+ LP +IIRKV KQ ALLD D+P+SQLHKCAF + DT YLCL+ +
Sbjct: 273 VQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPSDTPGGAGTYLCLATE 332
Query: 1100 R 1102
+
Sbjct: 333 K 333
Score = 26.2 bits (56), Expect(2) = 4e-84
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 1093 SKKIIQFQATPCPKEPX*EMIN 1158
++K+++FQA+ CPKE ++N
Sbjct: 331 TEKVVRFQASLCPKEANRALLN 352
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,238,030
Number of extensions: 993865
Number of successful extensions: 3470
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3436
Number of HSP's successfully gapped: 5
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356931.1| PREDICTED: recombining binding protein suppr... 596 e-171
Alignment gi|XP_003356932.1| PREDICTED: recombining binding protein suppr... 585 e-167
Alignment gi|XP_003356933.1| PREDICTED: recombining binding protein suppr... 582 e-166
Alignment gi|XP_003128938.2| PREDICTED: recombining binding protein suppr... 582 e-166
>ref|XP_003356931.1| PREDICTED: recombining binding protein suppressor of hairless isoform
2 [Sus scrofa].
Length = 487
Score = 596 bits (1536), Expect = e-171
Identities = 293/306 (95%), Positives = 295/306 (96%)
Frame = +2
Query: 230 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 409
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 410 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 589
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 590 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 769
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 770 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 949
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 950 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHA 1129
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 1130 QKNQXK 1147
K K
Sbjct: 301 PKEPNK 306
>ref|XP_003356932.1| PREDICTED: recombining binding protein suppressor of hairless isoform
3 [Sus scrofa].
Length = 500
Score = 585 bits (1507), Expect = e-167
Identities = 287/300 (95%), Positives = 289/300 (96%)
Frame = +2
Query: 248 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 427
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 20 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 79
Query: 428 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 607
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 80 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 139
Query: 608 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 787
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 140 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 199
Query: 788 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 967
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 200 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 259
Query: 968 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 260 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 319
>ref|XP_003356933.1| PREDICTED: recombining binding protein suppressor of hairless isoform
4 [Sus scrofa].
Length = 532
Score = 582 bits (1501), Expect = e-166
Identities = 286/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 53 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 112
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 113 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 172
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 173 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 232
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 233 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 292
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 293 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 351
>ref|XP_003128938.2| PREDICTED: recombining binding protein suppressor of hairless isoform
1 [Sus scrofa].
Length = 486
Score = 582 bits (1501), Expect = e-166
Identities = 286/299 (95%), Positives = 288/299 (96%)
Frame = +2
Query: 251 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 430
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 431 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 610
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 611 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 790
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 791 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 970
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 971 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQKR*SSFRPLHAQKNQXK 1147
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQ+R F+ K K
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 305
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,876,936
Number of extensions: 722273
Number of successful extensions: 2815
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2774
Number of HSP's successfully gapped: 4
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001951
(1159 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 351 5e-94
>Sscrofa_Chr08
|| Length = 148491826
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 549 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524893 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 20524952
Query: 609 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524953 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 20525012
Query: 669 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525013 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 20525069
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 726 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528052 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 20528111
Query: 786 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528112 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 20528171
Query: 846 cattttacattcatctct 863
||||||||||||||||||
Sbjct: 20528172 cattttacattcatctct 20528189
Score = 260 bits (131), Expect = 2e-66
Identities = 141/143 (98%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 976 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534104 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 20534163
Query: 1036 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534164 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 20534223
Query: 1096 aaaaag-ataatccagtttcagg 1117
| |||| ||||||||||||||||
Sbjct: 20534224 agaaagaataatccagtttcagg 20534246
Score = 252 bits (127), Expect = 4e-64
Identities = 148/158 (93%)
Strand = Plus / Plus
Query: 393 gccctcctccttgtgtgtatcttatgggcagtggatggaagnnnnnnnnngaacaaatgg 452
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20521088 gccctcctccttgtgtgtatcttatgggcagtggatggaagaaaaaaaaagaacaaatgg 20521147
Query: 453 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521148 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 20521207
Query: 513 gtgaccaggaaatgcaacagctgaacttggaaggaaag 550
|||||||||||||||| |||||||||||||||||||||
Sbjct: 20521208 gtgaccaggaaatgcagcagctgaacttggaaggaaag 20521245
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 864 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528353 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 20528412
Query: 924 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528413 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 20528465
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 286 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513873 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 20513932
Query: 346 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 385
||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513933 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 20513972
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 atgctccatcgcttgggtaggtttccagggaaggcagcgagctggatcccctactccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436517 atgctccatcgcttgggtaggtttccagggaaggcagcgagctggatcccctactccgct 20436576
Query: 61 ggcggcgcgaggcgtctggctcttcgctgcggctgtg 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 20436577 ggcggcgcgaggcgtctggctcttcgctgcggctgtg 20436613
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 191 tctcgcgagggttggagttttggcgagagtttgtggaagatggcgcctgttgtgacagg 249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436707 tctcgcgagggttggagttttggcgagagtttgtggaagatggcgcctgttgtgacagg 20436765
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 249 gaaaatttggtgagcggcctccacctaaacgacttactagggaagc 294
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20498410 gaaaatttggtgagcggcctccacctaaacgacttactaggtaagc 20498455
Score = 75.8 bits (38), Expect = 5e-11
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 1115 aggccactccatgcccaaaagaaccaanttaagagatgataaatg 1159
||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 20535430 aggccactccatgcccaaaagaaccaaataaagagatgataaatg 20535474
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,619,926
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 11
Length of query: 1159
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1138
Effective length of database: 2,808,413,156
Effective search space: 3195974171528
Effective search space used: 3195974171528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)