Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070469.1| recombining binding protein suppressor of ha... 678 0.0
Alignment gi|NP_001179282.1| recombining binding protein suppressor of ha... 350 1e-96
Alignment gi|XP_002692522.1| PREDICTED: recombination signal binding prot... 350 1e-96
>ref|NP_001070469.1| recombining binding protein suppressor of hairless [Bos taurus].
Length = 487
Score = 678 bits (1750), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Frame = +1
Query: 154 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 333
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 7 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 66
Query: 334 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 513
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 67 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 126
Query: 514 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 693
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 127 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 186
Query: 694 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 873
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 187 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 246
Query: 874 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 1053
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK
Sbjct: 247 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 306
Query: 1054 EMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
EMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 EMINDGASWTIISTDKAEYTFYEGMGPVLA 336
>ref|NP_001179282.1| recombining binding protein suppressor of hairless-like protein [Bos
taurus].
Length = 517
Score = 350 bits (899), Expect = 1e-96
Identities = 176/324 (54%), Positives = 229/324 (70%), Gaps = 11/324 (3%)
Frame = +1
Query: 178 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 357
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 358 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 516
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQERIIQFQATPCPKE 1044
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ E+++QFQA+PCP E
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQASPCPNE 346
Query: 1045 PNKEMINDGASWTIISTDKAEYTF 1116
N+ ++ND + WTII T+ E++F
Sbjct: 347 ANRALLNDNSCWTIIGTESVEFSF 370
>ref|XP_002692522.1| PREDICTED: recombination signal binding protein for immunoglobulin
kappa J region-like [Bos taurus].
Length = 517
Score = 350 bits (899), Expect = 1e-96
Identities = 176/324 (54%), Positives = 229/324 (70%), Gaps = 11/324 (3%)
Frame = +1
Query: 178 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 357
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 358 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 516
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYL VE G+F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQG-DFPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQERIIQFQATPCPKE 1044
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ E+++QFQA+PCP E
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQASPCPNE 346
Query: 1045 PNKEMINDGASWTIISTDKAEYTF 1116
N+ ++ND + WTII T+ E++F
Sbjct: 347 ANRALLNDNSCWTIIGTESVEFSF 370
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,500,198
Number of extensions: 1240380
Number of successful extensions: 3412
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3403
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,207,134
Effective search space: 4262140200
Effective search space used: 4262140200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863769.1| PREDICTED: similar to recombining binding prote... 676 0.0
Alignment gi|XP_536269.2| PREDICTED: similar to recombining binding prote... 676 0.0
Alignment gi|XP_863791.1| PREDICTED: similar to recombining binding prote... 671 0.0
Alignment gi|XP_543016.2| PREDICTED: similar to recombining binding prote... 357 2e-98
Alignment gi|XP_863700.1| PREDICTED: similar to recombining binding prote... 95 2e-19
Alignment gi|XP_863747.1| PREDICTED: similar to recombining binding prote... 64 3e-10
>ref|XP_863769.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 5 [Canis familiaris].
Length = 381
Score = 676 bits (1744), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLA 335
>ref|XP_536269.2| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 1 [Canis familiaris].
Length = 486
Score = 676 bits (1744), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLA 335
>ref|XP_863791.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 6 [Canis familiaris].
Length = 489
Score = 671 bits (1730), Expect = 0.0
Identities = 329/332 (99%), Positives = 329/332 (99%), Gaps = 3/332 (0%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFNRLRSQT 687
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD LCIASGTKVALFNRLRSQT
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADCEFLCIASGTKVALFNRLRSQT 186
Query: 688 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 867
VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM
Sbjct: 187 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 246
Query: 868 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 1047
ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP
Sbjct: 247 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 306
Query: 1048 NKEMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
NKEMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 NKEMINDGASWTIISTDKAEYTFYEGMGPVLA 338
>ref|XP_543016.2| PREDICTED: similar to recombining binding protein L [Canis
familiaris].
Length = 517
Score = 357 bits (915), Expect = 2e-98
Identities = 197/389 (50%), Positives = 254/389 (65%), Gaps = 18/389 (4%)
Frame = +1
Query: 4 PVPGVIPSGFPQSPRTSL------RARPKTRITG-ALPMDQTEGSPAEEVPAHAPSLGKF 162
PV PS P P T L ARP++ G +LP + T SP E VP
Sbjct: 3 PVRATDPSA-PPGPLTHLSLPDSSEARPQSGADGRSLPGNWTRSSP-ELVP--------- 51
Query: 163 GERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKK 342
+ RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+
Sbjct: 52 --------VLREGVRQCLRQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRV 103
Query: 343 KKEQMERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDK 501
K Q + E C ++G+ S E Q+LN E + + AKTLYISD+DK
Sbjct: 104 KPVQGQGHQAGETGPTVCGYMGLDGASGSAAETQKLNFEEQPDSREFGCAKTLYISDADK 163
Query: 502 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRS 681
RKHF L +++ + ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRS
Sbjct: 164 RKHFRLVLRLVHRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRS 223
Query: 682 QTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVT 861
QTVSTRYL VE G F AS++QW AF +HL D+ S+G +F R+GY+ YG V+LVC+VT
Sbjct: 224 QTVSTRYLSVEDGAFVASARQWAAFTLHLADEHCSQG-DFPPREGYVRYGSLVQLVCTVT 282
Query: 862 GMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQERIIQFQAT 1029
G+ LP +IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ ++++QFQA+
Sbjct: 283 GITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGDSPGGVGTYLCLATDKVVQFQAS 342
Query: 1030 PCPKEPNKEMINDGASWTIISTDKAEYTF 1116
PCPKE N+ ++ND + WTII T+ E++F
Sbjct: 343 PCPKESNRALLNDSSCWTIIGTESVEFSF 371
>ref|XP_863700.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 2 [Canis familiaris].
Length = 55
Score = 94.7 bits (234), Expect = 2e-19
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 291
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 51
>ref|XP_863747.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 4 [Canis familiaris].
Length = 180
Score = 63.9 bits (154), Expect = 3e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 1 MINDGASWTIISTDKAEYTFYEGMGPVLA 29
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,509,170
Number of extensions: 1278777
Number of successful extensions: 3633
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3627
Number of HSP's successfully gapped: 6
Length of query: 405
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 300
Effective length of database: 15,374,224
Effective search space: 4612267200
Effective search space used: 4612267200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005340.2| recombining binding protein suppressor of hairl... 708 0.0
Alignment gi|NP_056958.3| recombining binding protein suppressor of hairl... 677 0.0
Alignment gi|NP_976029.1| recombining binding protein suppressor of hairl... 674 0.0
Alignment gi|NP_976028.1| recombining binding protein suppressor of hairl... 674 0.0
Alignment gi|NP_055091.2| recombining binding protein suppressor of hairl... 350 2e-96
>ref|NP_005340.2| recombining binding protein suppressor of hairless isoform 1 [Homo
sapiens].
Length = 500
Score = 708 bits (1827), Expect = 0.0
Identities = 345/349 (98%), Positives = 346/349 (99%)
Frame = +1
Query: 97 MDQTEGSPAEEVPAHAPSLGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY 276
MD TEGSPAEE PAHAPS GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
Sbjct: 1 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY 60
Query: 277 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK 456
GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
Sbjct: 61 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK 120
Query: 457 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC 636
NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
Sbjct: 121 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC 180
Query: 637 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDG 816
IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDG
Sbjct: 181 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG 240
Query: 817 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL 996
YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
Sbjct: 241 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL 300
Query: 997 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 301 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA 349
>ref|NP_056958.3| recombining binding protein suppressor of hairless isoform 2 [Homo
sapiens].
Length = 487
Score = 677 bits (1746), Expect = 0.0
Identities = 329/330 (99%), Positives = 330/330 (100%)
Frame = +1
Query: 154 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 333
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 7 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 66
Query: 334 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 513
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 67 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 126
Query: 514 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 693
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 127 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 186
Query: 694 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 873
TRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 187 TRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 246
Query: 874 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 1053
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK
Sbjct: 247 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 306
Query: 1054 EMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
EMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 EMINDGASWTIISTDKAEYTFYEGMGPVLA 336
>ref|NP_976029.1| recombining binding protein suppressor of hairless isoform 4 [Homo
sapiens].
Length = 486
Score = 674 bits (1740), Expect = 0.0
Identities = 328/329 (99%), Positives = 329/329 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLA 335
>ref|NP_976028.1| recombining binding protein suppressor of hairless isoform 3 [Homo
sapiens].
Length = 485
Score = 674 bits (1740), Expect = 0.0
Identities = 328/329 (99%), Positives = 329/329 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 305
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 306 MINDGASWTIISTDKAEYTFYEGMGPVLA 334
>ref|NP_055091.2| recombining binding protein suppressor of hairless-like protein [Homo
sapiens].
Length = 517
Score = 350 bits (898), Expect = 2e-96
Identities = 177/326 (54%), Positives = 230/326 (70%), Gaps = 11/326 (3%)
Frame = +1
Query: 172 PPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKE 351
P + R +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 47 PEHTTILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPG 106
Query: 352 QMERDGCSEQESQPCAFIGIGN---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKH 510
Q + E C ++G+ + S E Q+LN E + + AKTLYISD+DKRKH
Sbjct: 107 QDQAHQAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKH 166
Query: 511 FMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 690
F L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTV
Sbjct: 167 FRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTV 226
Query: 691 STRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMA 870
STRYL VE G F AS++QW AF +HL D ++G +F R+GY+ YG V+LVC+VTG+
Sbjct: 227 STRYLSVEDGAFVASARQWAAFTLHLADGHSAQG-DFPPREGYVRYGSLVQLVCTVTGIT 285
Query: 871 LPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTE----RMYLCLSQERIIQFQATPCP 1038
LP +IIRKV KQ ALLD D+P+SQLHKCAF + YLCL+ E+++QFQA+PCP
Sbjct: 286 LPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCP 345
Query: 1039 KEPNKEMINDGASWTIISTDKAEYTF 1116
KE N+ ++ND + WTII T+ E++F
Sbjct: 346 KEANRALLNDSSCWTIIGTESVEFSF 371
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,786,718
Number of extensions: 1265455
Number of successful extensions: 3430
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3425
Number of HSP's successfully gapped: 5
Length of query: 405
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 300
Effective length of database: 14,835,944
Effective search space: 4450783200
Effective search space used: 4450783200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033061.3| recombining binding protein suppressor of hairl... 747 0.0
Alignment gi|NP_001074396.1| recombining binding protein suppressor of ha... 675 0.0
Alignment gi|NP_001074397.1| recombining binding protein suppressor of ha... 673 0.0
Alignment gi|NP_033062.1| recombining binding protein suppressor of hairl... 352 3e-97
>ref|NP_033061.3| recombining binding protein suppressor of hairless isoform 1 [Mus
musculus].
Length = 526
Score = 747 bits (1929), Expect = 0.0
Identities = 366/375 (97%), Positives = 368/375 (98%)
Frame = +1
Query: 19 IPSGFPQSPRTSLRARPKTRITGALPMDQTEGSPAEEVPAHAPSLGKFGERPPPKRLTRE 198
+PSGFPQSPRTS RARPKTRITGALPMD +EG AEE PAHAPS GKFGERPPPKRLTRE
Sbjct: 1 MPSGFPQSPRTSPRARPKTRITGALPMDYSEGLSAEERPAHAPSAGKFGERPPPKRLTRE 60
Query: 199 AMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSE 378
AMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSE
Sbjct: 61 AMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSE 120
Query: 379 QESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIG 558
QESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIG
Sbjct: 121 QESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIG 180
Query: 559 VFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASS 738
VFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASS
Sbjct: 181 VFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHVEGGNFHASS 240
Query: 739 QQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALL 918
QQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALL
Sbjct: 241 QQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALL 300
Query: 919 DADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKEMINDGASWTIISTD 1098
DADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKE NKEMINDGASWTIISTD
Sbjct: 301 DADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNKEMINDGASWTIISTD 360
Query: 1099 KAEYTFYEGMGPVLA 1143
KAEYTFYEGMGPVLA
Sbjct: 361 KAEYTFYEGMGPVLA 375
>ref|NP_001074396.1| recombining binding protein suppressor of hairless isoform 2 [Mus
musculus].
Length = 487
Score = 675 bits (1742), Expect = 0.0
Identities = 329/330 (99%), Positives = 329/330 (99%)
Frame = +1
Query: 154 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 333
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 7 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 66
Query: 334 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 513
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 67 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 126
Query: 514 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 693
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 127 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 186
Query: 694 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 873
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 187 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 246
Query: 874 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 1053
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKE NK
Sbjct: 247 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNK 306
Query: 1054 EMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
EMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 EMINDGASWTIISTDKAEYTFYEGMGPVLA 336
>ref|NP_001074397.1| recombining binding protein suppressor of hairless isoform 3 [Mus
musculus].
Length = 485
Score = 673 bits (1736), Expect = 0.0
Identities = 328/329 (99%), Positives = 328/329 (99%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKE NKE
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNKE 305
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 306 MINDGASWTIISTDKAEYTFYEGMGPVLA 334
>ref|NP_033062.1| recombining binding protein suppressor of hairless-like protein [Mus
musculus].
Length = 515
Score = 352 bits (904), Expect = 3e-97
Identities = 186/337 (55%), Positives = 238/337 (70%), Gaps = 13/337 (3%)
Frame = +1
Query: 145 PSLGKFGERPPPKR--LTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 318
PSL R PP+ + RE +R L++R +QTV ILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 34 PSLLGSWTRSPPEHAIILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVY 93
Query: 319 LMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKT 477
L G GW+ K Q + +E C ++G+ S E Q+LN E + + AKT
Sbjct: 94 LAGPGWRVKPMQDQALQSAETGPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKT 153
Query: 478 LYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKV 657
LYISD+DKRKHF L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV
Sbjct: 154 LYISDADKRKHFRLVLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKV 213
Query: 658 ALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQT 837
+LFNRLRSQTVSTRYL VE G F AS++QW AF +HL D S+G +F ++GYI YG
Sbjct: 214 SLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQG-DFPPQEGYIRYGSL 272
Query: 838 VKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF-YLKDT---ERMYLCLSQE 1005
V+LVC+VTG+ LP +IIRKV KQ ALLD D+P+SQLHKCAF + DT YLCL+ E
Sbjct: 273 VQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPSDTPGGAGTYLCLATE 332
Query: 1006 RIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTF 1116
++++FQA+ CPKE N+ ++ND + WTII T+ E+TF
Sbjct: 333 KVVRFQASLCPKEANRALLNDSSCWTIIGTESVEFTF 369
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,905,741
Number of extensions: 1084520
Number of successful extensions: 2849
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 301
Effective length of database: 12,493,815
Effective search space: 3760638315
Effective search space used: 3760638315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356932.1| PREDICTED: recombining binding protein suppr... 716 0.0
Alignment gi|XP_003356931.1| PREDICTED: recombining binding protein suppr... 678 0.0
Alignment gi|XP_003356933.1| PREDICTED: recombining binding protein suppr... 676 0.0
Alignment gi|XP_003128938.2| PREDICTED: recombining binding protein suppr... 676 0.0
>ref|XP_003356932.1| PREDICTED: recombining binding protein suppressor of hairless isoform
3 [Sus scrofa].
Length = 500
Score = 716 bits (1849), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Frame = +1
Query: 97 MDQTEGSPAEEVPAHAPSLGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY 276
MDQTEGSPAEEVPAHAPSLGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
Sbjct: 1 MDQTEGSPAEEVPAHAPSLGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY 60
Query: 277 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK 456
GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
Sbjct: 61 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK 120
Query: 457 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC 636
NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
Sbjct: 121 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC 180
Query: 637 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDG 816
IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDG
Sbjct: 181 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDG 240
Query: 817 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL 996
YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
Sbjct: 241 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL 300
Query: 997 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 301 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLA 349
>ref|XP_003356931.1| PREDICTED: recombining binding protein suppressor of hairless isoform
2 [Sus scrofa].
Length = 487
Score = 678 bits (1750), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Frame = +1
Query: 154 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 333
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 7 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 66
Query: 334 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 513
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 67 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 126
Query: 514 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 693
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 127 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 186
Query: 694 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 873
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 187 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 246
Query: 874 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 1053
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK
Sbjct: 247 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 306
Query: 1054 EMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
EMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 EMINDGASWTIISTDKAEYTFYEGMGPVLA 336
>ref|XP_003356933.1| PREDICTED: recombining binding protein suppressor of hairless isoform
4 [Sus scrofa].
Length = 532
Score = 676 bits (1745), Expect = 0.0
Identities = 330/332 (99%), Positives = 330/332 (99%)
Frame = +1
Query: 148 SLGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMG 327
S KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMG
Sbjct: 50 SCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMG 109
Query: 328 SGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRK 507
SGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRK
Sbjct: 110 SGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRK 169
Query: 508 HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 687
HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT
Sbjct: 170 HFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQT 229
Query: 688 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 867
VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM
Sbjct: 230 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 289
Query: 868 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 1047
ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP
Sbjct: 290 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 349
Query: 1048 NKEMINDGASWTIISTDKAEYTFYEGMGPVLA 1143
NKEMINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 350 NKEMINDGASWTIISTDKAEYTFYEGMGPVLA 381
>ref|XP_003128938.2| PREDICTED: recombining binding protein suppressor of hairless isoform
1 [Sus scrofa].
Length = 486
Score = 676 bits (1744), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Frame = +1
Query: 157 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 336
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 337 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 516
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 517 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 696
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 697 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 876
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 877 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 1056
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 1057 MINDGASWTIISTDKAEYTFYEGMGPVLA 1143
MINDGASWTIISTDKAEYTFYEGMGPVLA
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLA 335
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,870,095
Number of extensions: 791707
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2150
Number of HSP's successfully gapped: 4
Length of query: 405
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,829,335
Effective search space: 2684117840
Effective search space used: 2684117840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001952
(1217 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 351 6e-94
>Sscrofa_Chr08
|| Length = 148491826
Score = 351 bits (177), Expect = 6e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 455 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524893 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 20524952
Query: 515 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524953 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 20525012
Query: 575 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525013 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 20525069
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 1 ttccccgtccctggagtaatcccctccggttttcctcagtctccacgtacgtccctcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436378 ttccccgtccctggagtaatcccctccggttttcctcagtctccacgtacgtccctcagg 20436437
Query: 61 gcgcgtcccaaaacccggataaccggagcactccccatggaccagacggagggctcgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436438 gcgcgtcccaaaacccggataaccggagcactccccatggaccagacggagggctcgccc 20436497
Query: 121 gcggaggaggtgcctgcgcatgctccatcgcttgg 155
|||||||||||||||||||||||||||||||||||
Sbjct: 20436498 gcggaggaggtgcctgcgcatgctccatcgcttgg 20436532
Score = 289 bits (146), Expect = 2e-75
Identities = 156/158 (98%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 1022 aggccactccatgcccaaaagaaccaaataaagagatgataaatgatggagcttcctgga 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535430 aggccactccatgcccaaaagaaccaaataaagagatgataaatgatggagcttcctgga 20535489
Query: 1082 caatcattagtacggataaggcagagtatacattttacgaggggatgggccctgtccttg 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535490 caatcattagtacggataaggcagagtatacattttacgaggggatgggccctgtccttg 20535549
Query: 1142 -cccagtcacacctgtgcctgtcgtaaaaagtcttcag 1178
||||||||||||||||||||||||| |||||||||||
Sbjct: 20535550 ccccagtcacacctgtgcctgtcgtagaaagtcttcag 20535587
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 882 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534104 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 20534163
Query: 942 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534164 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 20534223
Query: 1002 agaaagaataatccagtttcagg 1024
|||||||||||||||||||||||
Sbjct: 20534224 agaaagaataatccagtttcagg 20534246
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 632 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528052 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 20528111
Query: 692 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528112 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 20528171
Query: 752 cattttacattcatctct 769
||||||||||||||||||
Sbjct: 20528172 cattttacattcatctct 20528189
Score = 252 bits (127), Expect = 4e-64
Identities = 148/158 (93%)
Strand = Plus / Plus
Query: 299 gccctcctccttgtgtgtatcttatgggcagtggatggaagnnnnnnnnngaacaaatgg 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20521088 gccctcctccttgtgtgtatcttatgggcagtggatggaagaaaaaaaaagaacaaatgg 20521147
Query: 359 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521148 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 20521207
Query: 419 gtgaccaggaaatgcaacagctgaacttggaaggaaag 456
|||||||||||||||| |||||||||||||||||||||
Sbjct: 20521208 gtgaccaggaaatgcagcagctgaacttggaaggaaag 20521245
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 770 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528353 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 20528412
Query: 830 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 882
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528413 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 20528465
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 192 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513873 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 20513932
Query: 252 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 291
||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513933 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 20513972
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 155 gaaaatttggtgagcggcctccacctaaacgacttactagggaagc 200
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20498410 gaaaatttggtgagcggcctccacctaaacgacttactaggtaagc 20498455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,495,533
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 10
Length of query: 1217
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1196
Effective length of database: 2,808,413,156
Effective search space: 3358862134576
Effective search space used: 3358862134576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)