Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070469.1| recombining binding protein suppressor of ha... 934 0.0
Alignment gi|NP_001179282.1| recombining binding protein suppressor of ha... 472 e-133
Alignment gi|XP_002692522.1| PREDICTED: recombination signal binding prot... 472 e-133
>ref|NP_001070469.1| recombining binding protein suppressor of hairless [Bos taurus].
Length = 487
Score = 934 bits (2414), Expect = 0.0
Identities = 456/468 (97%), Positives = 456/468 (97%)
Frame = +3
Query: 66 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 245
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 246 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 425
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 426 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 605
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 606 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 785
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 786 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 965
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 966 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLEL 1145
PKEPNKEMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLEL
Sbjct: 301 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLEL 360
Query: 1146 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 1325
TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG
Sbjct: 361 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 420
Query: 1326 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 421 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 468
>ref|NP_001179282.1| recombining binding protein suppressor of hairless-like protein [Bos
taurus].
Length = 517
Score = 472 bits (1215), Expect = e-133
Identities = 236/444 (53%), Positives = 307/444 (69%), Gaps = 11/444 (2%)
Frame = +3
Query: 108 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 287
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 288 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 446
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYL VE G+F AS++QW AF +HL D+ S+G+ F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQGD-FPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKE 974
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ E+++QFQA+PCP E
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQASPCPNE 346
Query: 975 PNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQ 1154
N+ ++ND + WTII T+ E++F + +L+L+GGGDVA LEL G+
Sbjct: 347 ANRALLNDNSCWTIIGTESVEFSFSTSLACTREPVTPVPLISTLELSGGGDVATLELHGE 406
Query: 1155 NFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIY 1334
NF L+VWFGDVEAETMYR S++CVVPD++ F WRW+R P+ VPV+LVR DG+ Y
Sbjct: 407 NFHAGLKVWFGDVEAETMYRSPRSLVCVVPDVAVFGSDWRWLRTPITVPVSLVRTDGLFY 466
Query: 1335 STSLTFTYTPEPGPRPHCSAAGAI 1406
++ +FTYTPE RP A GA+
Sbjct: 467 PSAFSFTYTPEYSARP--GAPGAL 488
>ref|XP_002692522.1| PREDICTED: recombination signal binding protein for immunoglobulin
kappa J region-like [Bos taurus].
Length = 517
Score = 472 bits (1215), Expect = e-133
Identities = 236/444 (53%), Positives = 307/444 (69%), Gaps = 11/444 (2%)
Frame = +3
Query: 108 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQM 287
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 48 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPG 107
Query: 288 ERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFM 446
+ + C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF
Sbjct: 108 QAHQAGQTGPLVCGYMGLDGASGSAAETQKLNFEEQPDSREFSCAKTLYISDADKRKHFR 167
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVST
Sbjct: 168 LVLRLMLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVST 227
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYL VE G+F AS++QW AF +HL D+ S+G+ F R+GY+ YG V+LVC+VTG+ LP
Sbjct: 228 RYLSVEDGDFVASARQWAAFTLHLADEQCSQGD-FPPREGYVRYGSLVQLVCTVTGITLP 286
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKE 974
+IIRKV KQ ALLD D+P+SQLHKCAF YLCL+ E+++QFQA+PCP E
Sbjct: 287 PMIIRKVAKQCALLDVDEPISQLHKCAFQFPGGPPGGGGTYLCLATEKVVQFQASPCPNE 346
Query: 975 PNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQ 1154
N+ ++ND + WTII T+ E++F + +L+L+GGGDVA LEL G+
Sbjct: 347 ANRALLNDNSCWTIIGTESVEFSFSTSLACTREPVTPVPLISTLELSGGGDVATLELHGE 406
Query: 1155 NFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIY 1334
NF L+VWFGDVEAETMYR S++CVVPD++ F WRW+R P+ VPV+LVR DG+ Y
Sbjct: 407 NFHAGLKVWFGDVEAETMYRSPRSLVCVVPDVAVFGSDWRWLRTPITVPVSLVRTDGLFY 466
Query: 1335 STSLTFTYTPEPGPRPHCSAAGAI 1406
++ +FTYTPE RP A GA+
Sbjct: 467 PSAFSFTYTPEYSARP--GAPGAL 488
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,556,891
Number of extensions: 1717421
Number of successful extensions: 4547
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4536
Number of HSP's successfully gapped: 3
Length of query: 532
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,140,958
Effective search space: 6009907150
Effective search space used: 6009907150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536269.2| PREDICTED: similar to recombining binding prote... 920 0.0
Alignment gi|XP_863791.1| PREDICTED: similar to recombining binding prote... 915 0.0
Alignment gi|XP_863769.1| PREDICTED: similar to recombining binding prote... 672 0.0
Alignment gi|XP_543016.2| PREDICTED: similar to recombining binding prote... 474 e-133
Alignment gi|XP_863747.1| PREDICTED: similar to recombining binding prote... 308 1e-83
Alignment gi|XP_863723.1| PREDICTED: similar to recombining binding prote... 238 2e-62
Alignment gi|XP_863700.1| PREDICTED: similar to recombining binding prote... 95 2e-19
>ref|XP_536269.2| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 1 [Canis familiaris].
Length = 486
Score = 920 bits (2379), Expect = 0.0
Identities = 449/461 (97%), Positives = 449/461 (97%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 366
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 367 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 426
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 427 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 467
>ref|XP_863791.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 6 [Canis familiaris].
Length = 489
Score = 915 bits (2365), Expect = 0.0
Identities = 449/464 (96%), Positives = 449/464 (96%), Gaps = 3/464 (0%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD---LCIASGTKVALFNRLRSQT 617
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNAD LCIASGTKVALFNRLRSQT
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADCEFLCIASGTKVALFNRLRSQT 186
Query: 618 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 797
VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM
Sbjct: 187 VSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGM 246
Query: 798 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 977
ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP
Sbjct: 247 ALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEP 306
Query: 978 NKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQN 1157
NKEMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQN
Sbjct: 307 NKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQN 366
Query: 1158 FTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYS 1337
FTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYS
Sbjct: 367 FTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYS 426
Query: 1338 TSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 427 TSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 470
>ref|XP_863769.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 5 [Canis familiaris].
Length = 381
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 329/342 (96%), Positives = 330/342 (96%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQL 1112
MINDGASWTIISTDKAEYTFYEGMG ESLQ+
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQM 348
Score = 77.4 bits (189), Expect(2) = 0.0
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +2
Query: 1208 VQMWREYALCRPRHFCIPRRLEMGPAASPGSSNFGP 1315
+QMWRE+ALC PRHFCIPRRLEMGPAASPGSSNFGP
Sbjct: 346 LQMWREHALCCPRHFCIPRRLEMGPAASPGSSNFGP 381
>ref|XP_543016.2| PREDICTED: similar to recombining binding protein L [Canis
familiaris].
Length = 517
Score = 474 bits (1220), Expect = e-133
Identities = 236/431 (54%), Positives = 304/431 (70%), Gaps = 11/431 (2%)
Frame = +3
Query: 123 REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGC 302
RE +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K Q +
Sbjct: 54 REGVRQCLRQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVQGQGHQA 113
Query: 303 SEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKM 461
E C ++G+ S E Q+LN E + + AKTLYISD+DKRKHF L +++
Sbjct: 114 GETGPTVCGYMGLDGASGSAAETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRLVLRL 173
Query: 462 FYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLHV 641
+ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTVSTRYL V
Sbjct: 174 VHRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTVSTRYLSV 233
Query: 642 EGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIR 821
E G F AS++QW AF +HL D+ S+G+ F R+GY+ YG V+LVC+VTG+ LP +IIR
Sbjct: 234 EDGAFVASARQWAAFTLHLADEHCSQGD-FPPREGYVRYGSLVQLVCTVTGITLPPMIIR 292
Query: 822 KVDKQTALLDADDPVSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCPKEPNKEM 989
KV KQ ALLD D+P+SQLHKCAF YLCL+ ++++QFQA+PCPKE N+ +
Sbjct: 293 KVAKQCALLDVDEPISQLHKCAFQFPGDSPGGVGTYLCLATDKVVQFQASPCPKESNRAL 352
Query: 990 INDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTPN 1169
+ND + WTII T+ E++F + +L+L+GGGDVA LEL G+NF
Sbjct: 353 LNDSSCWTIIGTESVEFSFSTSLAWTREPVTPVPLISTLELSGGGDVATLELHGENFHAG 412
Query: 1170 LRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSLT 1349
L+VWFGDVEAETMYR S++CVVPDI+AF WRW+R P+ VPV+LVR DG+ Y ++ +
Sbjct: 413 LKVWFGDVEAETMYRSPRSLVCVVPDIAAFGSDWRWLRTPITVPVSLVRADGLFYPSAFS 472
Query: 1350 FTYTPEPGPRP 1382
FTYTPE RP
Sbjct: 473 FTYTPEYSARP 483
>ref|XP_863747.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 4 [Canis familiaris].
Length = 180
Score = 308 bits (789), Expect = 1e-83
Identities = 149/161 (92%), Positives = 149/161 (92%)
Frame = +3
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 1 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 60
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 61 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 120
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 121 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 161
>ref|XP_863723.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 3 [Canis familiaris].
Length = 131
Score = 238 bits (606), Expect = 2e-62
Identities = 112/112 (100%), Positives = 112/112 (100%)
Frame = +3
Query: 1134 MLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLV 1313
MLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLV
Sbjct: 1 MLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLV 60
Query: 1314 RNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
RNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 61 RNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 112
>ref|XP_863700.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 2 [Canis familiaris].
Length = 55
Score = 94.7 bits (234), Expect = 2e-19
Identities = 45/45 (100%), Positives = 45/45 (100%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 221
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,163,629
Number of extensions: 1763136
Number of successful extensions: 4932
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4925
Number of HSP's successfully gapped: 8
Length of query: 532
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 424
Effective length of database: 15,274,216
Effective search space: 6476267584
Effective search space used: 6476267584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056958.3| recombining binding protein suppressor of hairl... 932 0.0
Alignment gi|NP_005340.2| recombining binding protein suppressor of hairl... 921 0.0
Alignment gi|NP_976029.1| recombining binding protein suppressor of hairl... 919 0.0
Alignment gi|NP_976028.1| recombining binding protein suppressor of hairl... 919 0.0
Alignment gi|NP_055091.2| recombining binding protein suppressor of hairl... 469 e-132
>ref|NP_056958.3| recombining binding protein suppressor of hairless isoform 2 [Homo
sapiens].
Length = 487
Score = 932 bits (2410), Expect = 0.0
Identities = 455/468 (97%), Positives = 456/468 (97%)
Frame = +3
Query: 66 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 245
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 246 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 425
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 426 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 605
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 606 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 785
RSQTVSTRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 786 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 965
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 966 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLEL 1145
PKEPNKEMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLEL
Sbjct: 301 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLEL 360
Query: 1146 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 1325
TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG
Sbjct: 361 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 420
Query: 1326 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 421 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 468
>ref|NP_005340.2| recombining binding protein suppressor of hairless isoform 1 [Homo
sapiens].
Length = 500
Score = 921 bits (2381), Expect = 0.0
Identities = 449/462 (97%), Positives = 450/462 (97%)
Frame = +3
Query: 84 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 263
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 20 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 79
Query: 264 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 443
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 80 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 139
Query: 444 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 623
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 140 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 199
Query: 624 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 803
TRYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 200 TRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 259
Query: 804 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 983
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK
Sbjct: 260 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 319
Query: 984 EMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFT 1163
EMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFT
Sbjct: 320 EMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFT 379
Query: 1164 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS 1343
PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS
Sbjct: 380 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS 439
Query: 1344 LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 440 LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 481
>ref|NP_976029.1| recombining binding protein suppressor of hairless isoform 4 [Homo
sapiens].
Length = 486
Score = 919 bits (2375), Expect = 0.0
Identities = 448/461 (97%), Positives = 449/461 (97%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 366
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 367 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 426
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 427 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 467
>ref|NP_976028.1| recombining binding protein suppressor of hairless isoform 3 [Homo
sapiens].
Length = 485
Score = 919 bits (2375), Expect = 0.0
Identities = 448/461 (97%), Positives = 449/461 (97%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAF+IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 305
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 306 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 365
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 366 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 425
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 426 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 466
>ref|NP_055091.2| recombining binding protein suppressor of hairless-like protein [Homo
sapiens].
Length = 517
Score = 469 bits (1208), Expect = e-132
Identities = 233/438 (53%), Positives = 305/438 (69%), Gaps = 11/438 (2%)
Frame = +3
Query: 102 PPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKE 281
P + R +R L+++ +QTV ILHAKVAQKSYGNEKRFFCPPPCVYL G GW+ K
Sbjct: 47 PEHTTILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPG 106
Query: 282 QMERDGCSEQESQPCAFIGIGN---SDQEMQQLNLE----GKNYCTAKTLYISDSDKRKH 440
Q + E C ++G+ + S E Q+LN E + + AKTLYISD+DKRKH
Sbjct: 107 QDQAHQAGETGPTVCGYMGLDSASGSATETQKLNFEQQPDSREFGCAKTLYISDADKRKH 166
Query: 441 FMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTV 620
F L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV+LFNRLRSQTV
Sbjct: 167 FRLVLRLVLRGGRELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKVSLFNRLRSQTV 226
Query: 621 STRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMA 800
STRYL VE G F AS++QW AF +HL D ++G+ F R+GY+ YG V+LVC+VTG+
Sbjct: 227 STRYLSVEDGAFVASARQWAAFTLHLADGHSAQGD-FPPREGYVRYGSLVQLVCTVTGIT 285
Query: 801 LPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTER----MYLCLSQERIIQFQATPCP 968
LP +IIRKV KQ ALLD D+P+SQLHKCAF + YLCL+ E+++QFQA+PCP
Sbjct: 286 LPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPGSPPGGGGTYLCLATEKVVQFQASPCP 345
Query: 969 KEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELT 1148
KE N+ ++ND + WTII T+ E++F + +L+L+GGGDVA LEL
Sbjct: 346 KEANRALLNDSSCWTIIGTESVEFSFSTSLACTLEPVTPVPLISTLELSGGGDVATLELH 405
Query: 1149 GQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGI 1328
G+NF L+VWFGDVEAETMYR S++CVVPD++AF WRW+R P+ +P++LVR DG+
Sbjct: 406 GENFHAGLKVWFGDVEAETMYRSPRSLVCVVPDVAAFCSDWRWLRAPITIPMSLVRADGL 465
Query: 1329 IYSTSLTFTYTPEPGPRP 1382
Y ++ +FTYTPE RP
Sbjct: 466 FYPSAFSFTYTPEYSVRP 483
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,279,187
Number of extensions: 1755629
Number of successful extensions: 4699
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4693
Number of HSP's successfully gapped: 5
Length of query: 532
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 425
Effective length of database: 14,770,016
Effective search space: 6277256800
Effective search space used: 6277256800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074396.1| recombining binding protein suppressor of ha... 926 0.0
Alignment gi|NP_033061.3| recombining binding protein suppressor of hairl... 915 0.0
Alignment gi|NP_001074397.1| recombining binding protein suppressor of ha... 913 0.0
Alignment gi|NP_033062.1| recombining binding protein suppressor of hairl... 466 e-131
>ref|NP_001074396.1| recombining binding protein suppressor of hairless isoform 2 [Mus
musculus].
Length = 487
Score = 926 bits (2394), Expect = 0.0
Identities = 452/468 (96%), Positives = 454/468 (97%)
Frame = +3
Query: 66 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 245
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 246 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 425
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 426 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 605
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 606 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 785
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 786 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 965
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 966 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLEL 1145
PKE NKEMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLEL
Sbjct: 301 PKEQNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLEL 360
Query: 1146 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 1325
TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG
Sbjct: 361 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 420
Query: 1326 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
+IYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVP NESNTNSEG+Y
Sbjct: 421 VIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPSNESNTNSEGNY 468
>ref|NP_033061.3| recombining binding protein suppressor of hairless isoform 1 [Mus
musculus].
Length = 526
Score = 915 bits (2365), Expect = 0.0
Identities = 446/462 (96%), Positives = 448/462 (96%)
Frame = +3
Query: 84 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 263
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 46 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 105
Query: 264 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 443
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 106 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 165
Query: 444 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 623
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 166 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 225
Query: 624 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 803
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 226 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 285
Query: 804 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 983
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKE NK
Sbjct: 286 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNK 345
Query: 984 EMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFT 1163
EMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFT
Sbjct: 346 EMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFT 405
Query: 1164 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS 1343
PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG+IYSTS
Sbjct: 406 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTS 465
Query: 1344 LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
LTFTYTPEPGPRPHCSAAGAILRANSSQVP NESNTNSEG+Y
Sbjct: 466 LTFTYTPEPGPRPHCSAAGAILRANSSQVPSNESNTNSEGNY 507
>ref|NP_001074397.1| recombining binding protein suppressor of hairless isoform 3 [Mus
musculus].
Length = 485
Score = 913 bits (2359), Expect = 0.0
Identities = 445/461 (96%), Positives = 447/461 (96%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 6 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 65
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 66 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 125
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 126 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 185
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 186 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 245
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKE NKE
Sbjct: 246 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNKE 305
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 306 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 365
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG+IYSTSL
Sbjct: 366 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTSL 425
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVP NESNTNSEG+Y
Sbjct: 426 TFTYTPEPGPRPHCSAAGAILRANSSQVPSNESNTNSEGNY 466
>ref|NP_033062.1| recombining binding protein suppressor of hairless-like protein [Mus
musculus].
Length = 515
Score = 466 bits (1200), Expect = e-131
Identities = 239/449 (53%), Positives = 309/449 (68%), Gaps = 12/449 (2%)
Frame = +3
Query: 72 PVVTGKFGERPPPKRLT-REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVY 248
P + G + PP + RE +R L++R +QTV ILHAKVAQKSYGNEKRFFCPPPCVY
Sbjct: 34 PSLLGSWTRSPPEHAIILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCPPPCVY 93
Query: 249 LMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQEMQQLNLE----GKNYCTAKT 407
L G GW+ K Q + +E C ++G+ S E Q+LN E + + AKT
Sbjct: 94 LAGPGWRVKPMQDQALQSAETGPTVCGYMGLDGASGSAPETQKLNFEEQPDSREFGCAKT 153
Query: 408 LYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKV 587
LYISD+DKRKHF L +++ ++G F S+ IKVISKPS+KKQSLKN DLCI+SG+KV
Sbjct: 154 LYISDADKRKHFRLVLRLVLRGGQELGTFHSRLIKVISKPSQKKQSLKNTDLCISSGSKV 213
Query: 588 ALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQT 767
+LFNRLRSQTVSTRYL VE G F AS++QW AF +HL D S+G+ F ++GYI YG
Sbjct: 214 SLFNRLRSQTVSTRYLSVEDGAFVASARQWAAFTLHLADGHCSQGD-FPPQEGYIRYGSL 272
Query: 768 VKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAF-YLKDTER---MYLCLSQE 935
V+LVC+VTG+ LP +IIRKV KQ ALLD D+P+SQLHKCAF + DT YLCL+ E
Sbjct: 273 VQLVCTVTGITLPPMIIRKVAKQCALLDVDEPISQLHKCAFQFPSDTPGGAGTYLCLATE 332
Query: 936 RIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLN 1115
++++FQA+ CPKE N+ ++ND + WTII T+ E+TF + +L+L+
Sbjct: 333 KVVRFQASLCPKEANRALLNDSSCWTIIGTESVEFTFSTSLACTREPVTPVPLISTLELS 392
Query: 1116 GGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQ 1295
GGGDVA LEL G+NF L+VWFGDVEAETMYR S++CVVPD++AF WRW+R P+
Sbjct: 393 GGGDVATLELHGENFHAGLKVWFGDVEAETMYRSPRSLVCVVPDVAAFGSDWRWLRTPIT 452
Query: 1296 VPVTLVRNDGIIYSTSLTFTYTPEPGPRP 1382
VPV+L+R D + Y + +FTYTPE P
Sbjct: 453 VPVSLLRADALFYPSPFSFTYTPEYSALP 481
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,857,353
Number of extensions: 1500930
Number of successful extensions: 4070
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4062
Number of HSP's successfully gapped: 4
Length of query: 532
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 426
Effective length of database: 12,433,743
Effective search space: 5296774518
Effective search space used: 5296774518
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356931.1| PREDICTED: recombining binding protein suppr... 934 0.0
Alignment gi|XP_003356932.1| PREDICTED: recombining binding protein suppr... 923 0.0
Alignment gi|XP_003356933.1| PREDICTED: recombining binding protein suppr... 920 0.0
Alignment gi|XP_003128938.2| PREDICTED: recombining binding protein suppr... 920 0.0
Alignment gi|XP_003360076.1| PREDICTED: recombining binding protein suppr... 127 1e-29
>ref|XP_003356931.1| PREDICTED: recombining binding protein suppressor of hairless isoform
2 [Sus scrofa].
Length = 487
Score = 934 bits (2414), Expect = 0.0
Identities = 456/468 (97%), Positives = 456/468 (97%)
Frame = +3
Query: 66 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 245
MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV
Sbjct: 1 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCV 60
Query: 246 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 425
YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS
Sbjct: 61 YLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDS 120
Query: 426 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 605
DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL
Sbjct: 121 DKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRL 180
Query: 606 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 785
RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS
Sbjct: 181 RSQTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCS 240
Query: 786 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 965
VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC
Sbjct: 241 VTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPC 300
Query: 966 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLEL 1145
PKEPNKEMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLEL
Sbjct: 301 PKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLEL 360
Query: 1146 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 1325
TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG
Sbjct: 361 TGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDG 420
Query: 1326 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 421 IIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 468
>ref|XP_003356932.1| PREDICTED: recombining binding protein suppressor of hairless isoform
3 [Sus scrofa].
Length = 500
Score = 923 bits (2385), Expect = 0.0
Identities = 450/462 (97%), Positives = 450/462 (97%)
Frame = +3
Query: 84 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 263
GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG
Sbjct: 20 GKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 79
Query: 264 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 443
WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF
Sbjct: 80 WKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHF 139
Query: 444 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 623
MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
Sbjct: 140 MLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS 199
Query: 624 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 803
TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL
Sbjct: 200 TRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMAL 259
Query: 804 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 983
PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK
Sbjct: 260 PRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNK 319
Query: 984 EMINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFT 1163
EMINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFT
Sbjct: 320 EMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFT 379
Query: 1164 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS 1343
PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS
Sbjct: 380 PNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTS 439
Query: 1344 LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 440 LTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 481
>ref|XP_003356933.1| PREDICTED: recombining binding protein suppressor of hairless isoform
4 [Sus scrofa].
Length = 532
Score = 920 bits (2379), Expect = 0.0
Identities = 449/461 (97%), Positives = 449/461 (97%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 53 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 112
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 113 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 172
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 173 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 232
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 233 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 292
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 293 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 352
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 353 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 412
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 413 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 472
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 473 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 513
>ref|XP_003128938.2| PREDICTED: recombining binding protein suppressor of hairless isoform
1 [Sus scrofa].
Length = 486
Score = 920 bits (2379), Expect = 0.0
Identities = 449/461 (97%), Positives = 449/461 (97%)
Frame = +3
Query: 87 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 266
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW
Sbjct: 7 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 66
Query: 267 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 446
KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM
Sbjct: 67 KKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFM 126
Query: 447 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 626
LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST
Sbjct: 127 LSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVST 186
Query: 627 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 806
RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP
Sbjct: 187 RYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALP 246
Query: 807 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 986
RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE
Sbjct: 247 RLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEPNKE 306
Query: 987 MINDGASWTIISTDKAEYTFYEGMGXXXXXXXXXXXXESLQLNGGGDVAMLELTGQNFTP 1166
MINDGASWTIISTDKAEYTFYEGMG ESLQLNGGGDVAMLELTGQNFTP
Sbjct: 307 MINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGGDVAMLELTGQNFTP 366
Query: 1167 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 1346
NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL
Sbjct: 367 NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGIIYSTSL 426
Query: 1347 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 1469
TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY
Sbjct: 427 TFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGSY 467
>ref|XP_003360076.1| PREDICTED: recombining binding protein suppressor of hairless-like
protein-like [Sus scrofa].
Length = 144
Score = 127 bits (320), Expect = 1e-29
Identities = 56/92 (60%), Positives = 72/92 (78%)
Frame = +3
Query: 1107 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ 1286
QL+GGGDVA LEL G+NF L+VWFGDVEAETM+R S++CVVPD++AF WRW+R
Sbjct: 19 QLSGGGDVATLELHGENFHAGLKVWFGDVEAETMFRSPRSLVCVVPDVAAFGSDWRWLRT 78
Query: 1287 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRP 1382
P+ VP++LVR DG+ Y ++ +FTYTPE RP
Sbjct: 79 PITVPLSLVRADGLFYPSAFSFTYTPEYSARP 110
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,806,900
Number of extensions: 1094734
Number of successful extensions: 3005
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3004
Number of HSP's successfully gapped: 5
Length of query: 532
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 428
Effective length of database: 8,754,644
Effective search space: 3746987632
Effective search space used: 3746987632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001953
(1597 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 729 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 729 bits (368), Expect = 0.0
Identities = 371/372 (99%)
Strand = Plus / Plus
Query: 1211 cagatgtggagagagtatgctctgtgtcgtcccagacatttctgcattccgagaaggttg 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536235 cagatgtggagagagtatgctctgtgtcgtcccagacatttctgcattccgagaaggttg 20536294
Query: 1271 gagatgggtccggcagccagtccaggttccagtaactttggtccgtaatgatggaatcat 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536295 gagatgggtccggcagccagtccaggttccagtaactttggtccgtaatgatggaatcat 20536354
Query: 1331 ttattccaccagccttacctttacctacacgccagaaccagggccacggccacattgcag 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536355 ttattccaccagccttacctttacctacacgccagaaccagggccacggccacattgcag 20536414
Query: 1391 tgcggcgggagcaatccttcgagccaattcaagccaagtgccccctaatgaatcgaacac 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536415 tgcggcgggagcaatccttcgagccaattcaagccaagtgccccctaatgaatcgaacac 20536474
Query: 1451 aaacagcgagggaagttacacaaatgtcagcacaaattcaaccagtgtcacatcatcgac 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536475 aaacagcgagggaagttacacaaatgtcagcacaaattcaaccagtgtcacatcatcgac 20536534
Query: 1511 agcaacagtcgtgtcctaactaccgtctttttgctaggactcacactgactcgcgtgcgg 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 20536535 agcaacagtcgtgtcctaactaccgtctttttgctaggactcacactgactcgagtgcgg 20536594
Query: 1571 caaaatgttgac 1582
||||||||||||
Sbjct: 20536595 caaaatgttgac 20536606
Score = 351 bits (177), Expect = 7e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 385 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524893 agaactattgcacggccaaaacattgtatatatctgattcagacaagagaaagcacttca 20524952
Query: 445 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20524953 tgctgtctgtaaagatgttctacggcaatagtgacgacatcggtgtgtttctcagcaagc 20525012
Query: 505 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525013 ggataaaagtcatctccaaaccttccaaaaagaagcagtcattgaaaaatgctgact 20525069
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 952 aggccactccatgcccaaaagaaccaaataaagagatgataaatgatggagcttcctgga 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535430 aggccactccatgcccaaaagaaccaaataaagagatgataaatgatggagcttcctgga 20535489
Query: 1012 caatcattagtacggataaggcagagtatacattttacgaggggatgggccctgtccttg 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535490 caatcattagtacggataaggcagagtatacattttacgaggggatgggccctgtccttg 20535549
Query: 1072 ccccagtcacacctgtgcctgtcgtagaaagtcttcag 1109
||||||||||||||||||||||||||||||||||||||
Sbjct: 20535550 ccccagtcacacctgtgcctgtcgtagaaagtcttcag 20535587
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 812 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534104 gataatcaggaaggttgataagcagaccgcattattggatgcagatgatcctgtgtcaca 20534163
Query: 872 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20534164 gctccataaatgtgcattttaccttaaagatacagaaagaatgtacttgtgcctttctca 20534223
Query: 932 agaaagaataatccagtttcagg 954
|||||||||||||||||||||||
Sbjct: 20534224 agaaagaataatccagtttcagg 20534246
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 562 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528052 tatgcattgcctcaggaacaaaggtggctctgtttaatcgacttcgatcccagacagtta 20528111
Query: 622 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528112 gtaccagatacttgcatgtagaaggaggtaatttccatgccagttctcagcagtggggag 20528171
Query: 682 cattttacattcatctct 699
||||||||||||||||||
Sbjct: 20528172 cattttacattcatctct 20528189
Score = 252 bits (127), Expect = 5e-64
Identities = 148/158 (93%)
Strand = Plus / Plus
Query: 229 gccctcctccttgtgtgtatcttatgggcagtggatggaagnnnnnnnnngaacaaatgg 288
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 20521088 gccctcctccttgtgtgtatcttatgggcagtggatggaagaaaaaaaaagaacaaatgg 20521147
Query: 289 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20521148 aacgggatggttgttctgaacaagagtctcaaccatgtgcatttattggaataggaaata 20521207
Query: 349 gtgaccaggaaatgcaacagctgaacttggaaggaaag 386
|||||||||||||||| |||||||||||||||||||||
Sbjct: 20521208 gtgaccaggaaatgcagcagctgaacttggaaggaaag 20521245
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 700 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528353 tggatgatgatgagtcggaaggagaagaattcacagtccgcgatggatacatccattatg 20528412
Query: 760 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20528413 gacaaacagtcaaacttgtgtgttcagttactggcatggcactcccgagattg 20528465
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1107 cagttaaatggcggtggagacgtggcaatgcttgaacttacaggacagaatttcactcca 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20535974 cagttaaatggcggtggagacgtggcaatgcttgaacttacaggacagaatttcactcca 20536033
Query: 1167 aatttacgagtgtggtttggggatgtagaagctgaaactatgtacag 1213
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20536034 aatttacgagtgtggtttggggatgtagaagctgaaactatgtacag 20536080
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 122 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513873 tagggaagctatgcgaaattatttaaaagagcgaggagatcaaacagtacttattcttca 20513932
Query: 182 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 20513933 tgcaaaagttgcacagaagtcatatgggaatgaaaaaagg 20513972
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gggaccagggaaggcgtcagggggaatctcgcgagggttggagttttggcgagagtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20436681 gggaccagggaaggcgtcagggggaatctcgcgagggttggagttttggcgagagtttgt 20436740
Query: 61 ggaagatggcgcctgttgtgacagg 85
|||||||||||||||||||||||||
Sbjct: 20436741 ggaagatggcgcctgttgtgacagg 20436765
Score = 83.8 bits (42), Expect = 3e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 85 gaaaatttggtgagcggcctccacctaaacgacttactagggaagc 130
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 20498410 gaaaatttggtgagcggcctccacctaaacgacttactaggtaagc 20498455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,409,635
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 12
Length of query: 1597
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1575
Effective length of database: 2,808,408,574
Effective search space: 4423243504050
Effective search space used: 4423243504050
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)