Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776414.1| protein AMBP precursor [Bos taurus]. 521 e-167
Alignment gi|NP_001070353.1| WAP, kazal, immunoglobulin, kunitz and NTR d... 62 2e-15
Alignment gi|XP_002692379.1| PREDICTED: tissue factor pathway inhibitor-l... 75 1e-13
Alignment gi|XP_002701177.1| PREDICTED: tissue factor pathway inhibitor-l... 75 1e-13
Alignment gi|NP_001039436.1| kunitz-type protease inhibitor 2 [Bos taurus]. 60 4e-12
Alignment gi|NP_001192725.1| WAP, follistatin/kazal, immunoglobulin, kuni... 55 1e-11
Alignment gi|XP_002697948.1| PREDICTED: WAP, follistatin/kazal, immunoglo... 55 1e-11
Alignment gi|NP_777216.1| prostaglandin-H2 D-isomerase [Bos taurus]. 68 2e-11
Alignment gi|XP_002685288.1| PREDICTED: tissue factor pathway inhibitor (... 67 4e-11
Alignment gi|XP_002685287.1| PREDICTED: tissue factor pathway inhibitor (... 67 4e-11
>ref|NP_776414.1| protein AMBP precursor [Bos taurus].
Length = 352
Score = 521 bits (1343), Expect(2) = e-167
Identities = 249/304 (81%), Positives = 267/304 (87%)
Frame = +3
Query: 321 MRSXXXXXXXXXXXXXVSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFK 500
MRS V+AS V TLP+DIQVQENFDLSRIYGKWF+VAVGSTCPWLKRFK
Sbjct: 1 MRSLSGLLLLLTACLAVNASSVPTLPDDIQVQENFDLSRIYGKWFNVAVGSTCPWLKRFK 60
Query: 501 DKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMES 680
+KMTM T++L G T +EISVT THRRKG+CE ISG YEKTS DGKFLYHK+KWNITMES
Sbjct: 61 EKMTMSTVVLIAGPTSKEISVTNTHRRKGVCESISGTYEKTSADGKFLYHKAKWNITMES 120
Query: 681 YVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIF 860
YVVHTNYDEYAIFLTKK SRRHGPT+T KLYGREPQLRESLLEEFREVALGVGIPED+IF
Sbjct: 121 YVVHTNYDEYAIFLTKKLSRRHGPTITVKLYGREPQLRESLLEEFREVALGVGIPEDAIF 180
Query: 861 TMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPC 1040
TMPDRGECVPGEQ+P PT LSRARRAVL QEEEGSGAGQPV +FSKK DSCQL YSQGPC
Sbjct: 181 TMPDRGECVPGEQDPVPTPLSRARRAVLTQEEEGSGAGQPVTNFSKKADSCQLDYSQGPC 240
Query: 1041 LGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFF 1220
LG+ KRYFYNG+SMACETF YGGCMGNGNNF+SEKECLQTCRTVEAC+LPIV GPCR +
Sbjct: 241 LGLFKRYFYNGTSMACETFLYGGCMGNGNNFLSEKECLQTCRTVEACNLPIVQGPCRSYI 300
Query: 1221 QLWA 1232
QLWA
Sbjct: 301 QLWA 304
Score = 87.0 bits (214), Expect(2) = e-167
Identities = 36/43 (83%), Positives = 41/43 (95%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLR 1371
AV+GKCV F+YGGC+GNGN+FYSEKECKEYCG+PGE DEELLR
Sbjct: 307 AVKGKCVRFSYGGCKGNGNKFYSEKECKEYCGIPGEADEELLR 349
>ref|NP_001070353.1| WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein
2 precursor [Bos taurus].
Length = 574
Score = 56.2 bits (134), Expect(2) = 2e-15
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +3
Query: 951 EEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNN 1130
E +G P A+ K DS G Q R++++ + C TF +G C N N+
Sbjct: 313 ESSPNGTALPAAECLKPPDSDDCGEEQ-------TRWYFDAQANNCLTFTFGHCHRNRNH 365
Query: 1131 FVSEKECLQTCR--TVEACSLPIVSGPCRGFFQLWA 1232
F + + C+ C ++ CSLP + GPC+ + WA
Sbjct: 366 FETYEACMLACMSGSLAMCSLPALQGPCKAYVPRWA 401
Score = 45.4 bits (106), Expect(2) = 2e-15
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G+C F YGGC+GNGN F S ++C+E C P
Sbjct: 407 GQCQSFVYGGCEGNGNNFESREDCEESCPFP 437
Score = 61.6 bits (148), Expect = 2e-09
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C L QGPC + R+ YN + C++F YGGC GNGNNF S ++C ++C
Sbjct: 384 CSLPALQGPCKAYVPRWAYNSQTGQCQSFVYGGCEGNGNNFESREDCEESC 434
>ref|XP_002692379.1| PREDICTED: tissue factor pathway inhibitor-like [Bos taurus].
Length = 158
Score = 75.1 bits (183), Expect = 1e-13
Identities = 32/62 (51%), Positives = 40/62 (64%)
Frame = +3
Query: 990 FSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRT 1169
F K D CQL ++GPC + RYFYN +S ACE F YGGC GN NNF + + CL+ C+
Sbjct: 37 FQKPPDLCQLPQARGPCKAALLRYFYNSTSNACEPFTYGGCQGNDNNFETTEMCLRICQP 96
Query: 1170 VE 1175
E
Sbjct: 97 PE 98
>ref|XP_002701177.1| PREDICTED: tissue factor pathway inhibitor-like [Bos taurus].
Length = 158
Score = 75.1 bits (183), Expect = 1e-13
Identities = 32/62 (51%), Positives = 40/62 (64%)
Frame = +3
Query: 990 FSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRT 1169
F K D CQL ++GPC + RYFYN +S ACE F YGGC GN NNF + + CL+ C+
Sbjct: 37 FQKPPDLCQLPQARGPCKAALLRYFYNSTSNACEPFTYGGCQGNDNNFETTEMCLRICQP 96
Query: 1170 VE 1175
E
Sbjct: 97 PE 98
>ref|NP_001039436.1| kunitz-type protease inhibitor 2 [Bos taurus].
Length = 250
Score = 53.1 bits (126), Expect(2) = 4e-12
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 37/112 (33%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV---- 1172
D C L G C R++YN + +C+ F YGGC N NN+++++ECL C V
Sbjct: 36 DFCHLPKKVGRCRASFPRWWYNVTDGSCQQFVYGGCDRNDNNYMTKEECLAKCAGVTENT 95
Query: 1173 ---------------------------------EACSLPIVSGPCRGFFQLW 1229
E C V+GPCR F W
Sbjct: 96 IDERTRDKADSSVPSVPRRQDSDGLSGDIFSYEEHCIAKAVTGPCRAAFPRW 147
Score = 37.4 bits (85), Expect(2) = 4e-12
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYC 1335
A + C F YGGC+GN N + S++EC + C
Sbjct: 151 AEENSCDNFIYGGCRGNKNNYRSKEECMQQC 181
Score = 60.1 bits (144), Expect = 5e-09
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +3
Query: 942 LPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGN 1121
+P+ ++ G D E+ C GPC R+++N +C+ F YGGC GN
Sbjct: 111 VPRRQDSDGLS---GDIFSYEEHCIAKAVTGPCRAAFPRWYFNAEENSCDNFIYGGCRGN 167
Query: 1122 GNNFVSEKECLQTC 1163
NN+ S++EC+Q C
Sbjct: 168 KNNYRSKEECMQQC 181
>ref|NP_001192725.1| WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain
containing 1 [Bos taurus].
Length = 550
Score = 48.5 bits (114), Expect(2) = 1e-11
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV--EACSLPIVSGP 1205
GP G + +F + C TF G C G F + + C Q C +AC+LP V GP
Sbjct: 310 GPPSGRVLWHF-DPQRRGCMTFPVGSCAGGAQGFETYEACQQACARDPGDACALPAVQGP 368
Query: 1206 CRGFFQLWA 1232
C+G+ WA
Sbjct: 369 CQGWEPRWA 377
Score = 40.0 bits (92), Expect(2) = 1e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
C F Y GC+GNGN F S + C+ C VP
Sbjct: 385 CHPFEYSGCEGNGNNFESRESCEHACPVP 413
Score = 55.5 bits (132), Expect = 1e-07
Identities = 24/53 (45%), Positives = 28/53 (52%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
D+C L QGPC G R+ Y+ C F Y GC GNGNNF S + C C
Sbjct: 358 DACALPAVQGPCQGWEPRWAYSPLLQHCHPFEYSGCEGNGNNFESRESCEHAC 410
>ref|XP_002697948.1| PREDICTED: WAP, follistatin/kazal, immunoglobulin, kunitz and netrin
domain containing 1 [Bos taurus].
Length = 550
Score = 48.5 bits (114), Expect(2) = 1e-11
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV--EACSLPIVSGP 1205
GP G + +F + C TF G C G F + + C Q C +AC+LP V GP
Sbjct: 310 GPPSGRVLWHF-DPQRRGCMTFPVGSCAGGAQGFETYEACQQACARDPGDACALPAVQGP 368
Query: 1206 CRGFFQLWA 1232
C+G+ WA
Sbjct: 369 CQGWEPRWA 377
Score = 40.0 bits (92), Expect(2) = 1e-11
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
C F Y GC+GNGN F S + C+ C VP
Sbjct: 385 CHPFEYSGCEGNGNNFESRESCEHACPVP 413
Score = 55.5 bits (132), Expect = 1e-07
Identities = 24/53 (45%), Positives = 28/53 (52%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
D+C L QGPC G R+ Y+ C F Y GC GNGNNF S + C C
Sbjct: 358 DACALPAVQGPCQGWEPRWAYSPLLQHCHPFEYSGCEGNGNNFESRESCEHAC 410
>ref|NP_777216.1| prostaglandin-H2 D-isomerase [Bos taurus].
Length = 191
Score = 67.8 bits (164), Expect = 2e-11
Identities = 44/170 (25%), Positives = 71/170 (41%)
Frame = +3
Query: 396 PNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATEREISVTKTH 575
P +Q NF+ + G+WF + S W K ++M ++ A + +++T T
Sbjct: 25 PAQAALQPNFEEDKFLGRWFTSGLASNSSWFLEKKKVLSMCKSVVAPAA-DGGLNLTSTF 83
Query: 576 RRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSRRHGPT 755
RK CE + G + Y W+ T E V T+Y+ YA+ T+
Sbjct: 84 LRKDQCETRTLLLRPAGPPGCYSYTSPHWSSTHEVSVAETDYETYALLYTEGVRGPGQDF 143
Query: 756 LTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGEQEP 905
A LY R R + E F A +G E+ I +P +C+ E+ P
Sbjct: 144 RMATLYSRSQNPRAEVKEHFTTFAKSLGFTEEGIVFLPKTDKCM--EEHP 191
>ref|XP_002685288.1| PREDICTED: tissue factor pathway inhibitor (lipoprotein-associated
coagulation inhibitor) isoform 2 [Bos taurus].
Length = 304
Score = 67.0 bits (162), Expect = 4e-11
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C L G C G I RYFYN S CE F YGGC+GN NNF S +EC TC
Sbjct: 118 EKPDYCFLEEDTGICRGYIIRYFYNNQSKQCERFTYGGCLGNLNNFESLEECKNTC 173
Score = 60.8 bits (146), Expect = 3e-09
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C + GPC MIKR+F+N + CE F YGGC GN N F + +EC Q C
Sbjct: 50 CAMRVDDGPCKAMIKRFFFNIHTQQCEEFIYGGCKGNQNRFETLEECKQKC 100
>ref|XP_002685287.1| PREDICTED: tissue factor pathway inhibitor (lipoprotein-associated
coagulation inhibitor) isoform 1 [Bos taurus].
Length = 304
Score = 67.0 bits (162), Expect = 4e-11
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C L G C G I RYFYN S CE F YGGC+GN NNF S +EC TC
Sbjct: 118 EKPDYCFLEEDTGICRGYIIRYFYNNQSKQCERFTYGGCLGNLNNFESLEECKNTC 173
Score = 60.8 bits (146), Expect = 3e-09
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C + GPC MIKR+F+N + CE F YGGC GN N F + +EC Q C
Sbjct: 50 CAMRVDDGPCKAMIKRFFFNIHTQQCEEFIYGGCKGNQNRFETLEECKQKC 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,835,243
Number of extensions: 1675593
Number of successful extensions: 7832
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 7799
Number of HSP's successfully gapped: 67
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538807.2| PREDICTED: similar to AMBP protein precursor [C... 492 e-162
Alignment gi|NP_001003243.1| tissue factor pathway inhibitor [Canis lupus... 67 4e-16
Alignment gi|XP_548206.2| PREDICTED: similar to WFIKKN2 protein isoform 1... 58 3e-14
Alignment gi|NP_001003131.1| prostaglandin-H2 D-isomerase [Canis lupus fa... 74 4e-13
Alignment gi|XP_853537.1| PREDICTED: similar to serine protease inhibitor... 56 1e-12
Alignment gi|XP_865938.1| PREDICTED: similar to WFIKKN2 protein isoform 3... 58 2e-11
Alignment gi|XP_543019.2| PREDICTED: similar to Tissue factor pathway inh... 68 3e-11
Alignment gi|XP_532462.2| PREDICTED: similar to Tissue factor pathway inh... 57 5e-11
Alignment gi|XP_544625.2| PREDICTED: similar to hepatocyte growth factor ... 65 2e-10
Alignment gi|XP_547215.2| PREDICTED: similar to WAP, follistatin/kazal, i... 53 7e-10
>ref|XP_538807.2| PREDICTED: similar to AMBP protein precursor [Canis familiaris].
Length = 415
Score = 492 bits (1266), Expect(3) = e-162
Identities = 235/309 (76%), Positives = 257/309 (83%)
Frame = +3
Query: 306 EEPGAMRSXXXXXXXXXXXXXVSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPW 485
EEP AM S ASPVLT P+DIQVQENFD+SRIYGKWFHVAVGSTCPW
Sbjct: 62 EEPRAMWSLGAPFLLLTACLAARASPVLTPPDDIQVQENFDVSRIYGKWFHVAVGSTCPW 121
Query: 486 LKRFKDKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWN 665
LK+F D+M+M TL+LGEG T+RE+S+T T R+G CE ISG YE T T GKFLYHK KWN
Sbjct: 122 LKKFMDRMSMSTLVLGEGPTDRELSMTSTRWRRGTCEEISGTYEITGTSGKFLYHKPKWN 181
Query: 666 ITMESYVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIP 845
+TMESYVVHTNYDEYAIFLTKKFSR HGPT+TAKLYGR+PQLRESLLEEFREVALGVGIP
Sbjct: 182 LTMESYVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRQPQLRESLLEEFREVALGVGIP 241
Query: 846 EDSIFTMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGY 1025
D+IFTM D+GECVPGEQEPEP+ RARRAVLPQEEEGSGAGQ V KKED+CQL +
Sbjct: 242 ADAIFTMADKGECVPGEQEPEPSPYMRARRAVLPQEEEGSGAGQLVNTVYKKEDACQLDH 301
Query: 1026 SQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGP 1205
++GPCLGM+ RYFYNGSSMACETF YGGC+GNGNNF SEKECLQTCRTV ACSLPIV GP
Sbjct: 302 AEGPCLGMVTRYFYNGSSMACETFQYGGCLGNGNNFASEKECLQTCRTVAACSLPIVPGP 361
Query: 1206 CRGFFQLWA 1232
CR LWA
Sbjct: 362 CRMHHSLWA 370
Score = 83.6 bits (205), Expect(3) = e-162
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLR 1371
AVQG+CV F YGGCQGNGN+FYSEKECKEYCG PG DEELLR
Sbjct: 373 AVQGRCVRFVYGGCQGNGNKFYSEKECKEYCGAPGAGDEELLR 415
Score = 38.5 bits (88), Expect(3) = e-162
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Frame = +2
Query: 158 GPDWSLLSR------ANSRVIYSHRPLPQLQFTATSGREVVAVLSPTEPVSDTRS---RG 310
G D SL R AN++V Y RP PQ QF A GRE V LSP R R
Sbjct: 7 GEDRSLAQRQRRPRSANTKVAYKLRPPPQPQFAAAVGREAVVPLSPHRACECHRGEEPRA 66
Query: 311 AWS 319
WS
Sbjct: 67 MWS 69
>ref|NP_001003243.1| tissue factor pathway inhibitor [Canis lupus familiaris].
Length = 396
Score = 67.0 bits (162), Expect(2) = 4e-16
Identities = 39/110 (35%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Frame = +3
Query: 936 AVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCM 1115
AVL + EE G + C L GPC MI+ YF+N + CE F YGGC
Sbjct: 28 AVLDESEEYPGITDELPPLRLLHSFCALKADNGPCRAMIRNYFFNIHTQQCEEFIYGGCE 87
Query: 1116 GNGNNFVSEKECLQTCRTV----------------EACSLPIVSGPCRGF 1217
GN N F S +EC + C V + C + SG CRGF
Sbjct: 88 GNQNRFESLEECEEKCVRVYPKAKTETLEKVLEKPDYCHMNEDSGLCRGF 137
Score = 37.0 bits (84), Expect(2) = 4e-16
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 1246 VQGKCVLFNYGGCQGNGNQFYSEKECKEYC 1335
V KC F YGGC GN N F + ++CK C
Sbjct: 146 VSSKCEGFKYGGCLGNLNNFETLEQCKNTC 175
Score = 65.1 bits (157), Expect = 2e-10
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C + G C G + RY+YN S CE F YGGC+GN NNF + ++C TC
Sbjct: 120 EKPDYCHMNEDSGLCRGFVTRYYYNNVSSKCEGFKYGGCLGNLNNFETLEQCKNTC 175
>ref|XP_548206.2| PREDICTED: similar to WFIKKN2 protein isoform 1 [Canis familiaris].
Length = 575
Score = 55.8 bits (133), Expect(2) = 3e-14
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = +3
Query: 909 PTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMAC 1088
P + R +A E +G P A+ K DS G Q R+ ++ + C
Sbjct: 300 PLSVVRGGQAATTLESGPNGTAFPAAECLKPPDSEDCGEEQ-------TRWHFDAQANNC 352
Query: 1089 ETFHYGGCMGNGNNFVSEKECLQTCRT--VEACSLPIVSGPCRGFFQLWA 1232
TF +G C N N+F + + C+ C + + CSLP + GPC+ + WA
Sbjct: 353 LTFTFGHCHRNRNHFETYEACMLACMSGPLAVCSLPALQGPCKAYAPRWA 402
Score = 42.0 bits (97), Expect(2) = 3e-14
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G+C F YGGC+GN N F S + C+E C P
Sbjct: 408 GQCQSFVYGGCEGNSNNFESREACEESCPFP 438
Score = 57.8 bits (138), Expect = 3e-08
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C L QGPC R+ YN S C++F YGGC GN NNF S + C ++C
Sbjct: 385 CSLPALQGPCKAYAPRWAYNSQSGQCQSFVYGGCEGNSNNFESREACEESC 435
>ref|NP_001003131.1| prostaglandin-H2 D-isomerase [Canis lupus familiaris].
Length = 191
Score = 73.9 bits (180), Expect = 4e-13
Identities = 44/161 (27%), Positives = 72/161 (44%)
Frame = +3
Query: 405 IQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATEREISVTKTHRRK 584
+ +Q NF + G+WF + S W + K+ ++M ++ A + +++T T RK
Sbjct: 28 VSLQPNFQQDKFLGRWFTSGLASNSSWFREKKNVLSMCMSVVAPTA-DGGLNLTSTFLRK 86
Query: 585 GICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSRRHGPTLTA 764
CE + T G + Y W T + +VV TNY+EYA+ T A
Sbjct: 87 DQCETRTLLLRPAGTPGCYSYTSPHWGSTHDVWVVATNYEEYALLYTAGSKGLGQDFHMA 146
Query: 765 KLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECV 887
LY R + + E+F A G ED+I +P +C+
Sbjct: 147 TLYSRTQTPKAEIKEKFSTFAKTQGFTEDAIVFLPQTDKCM 187
>ref|XP_853537.1| PREDICTED: similar to serine protease inhibitor, Kunitz type, 2
isoform 2 [Canis familiaris].
Length = 252
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 39/114 (34%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV---- 1172
D C + G C R++YN + +C+ F YGGC GN NN+++++ECL+ C V
Sbjct: 36 DFCHVSKVVGRCRASFPRWWYNVTDGSCQQFVYGGCEGNKNNYMTKEECLKKCAGVTENT 95
Query: 1173 -----------------------------------EACSLPIVSGPCRGFFQLW 1229
E C+ V+GPCR F W
Sbjct: 96 VDDLATSRNGAESSVPSVSRRQDSDDLSSDIFDYEEYCTAKAVTGPCRASFPRW 149
Score = 35.8 bits (81), Expect(2) = 1e-12
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 1249 QGKCVLFNYGGCQGNGNQFYSEKECKEYC 1335
+ C F YGGC+GN N + S++EC C
Sbjct: 155 KNSCDSFIYGGCRGNKNSYLSKEECMHRC 183
Score = 53.9 bits (128), Expect = 4e-07
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +3
Query: 984 ADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+D E+ C GPC R++++ +C++F YGGC GN N+++S++EC+ C
Sbjct: 124 SDIFDYEEYCTAKAVTGPCRASFPRWYFDVEKNSCDSFIYGGCRGNKNSYLSKEECMHRC 183
>ref|XP_865938.1| PREDICTED: similar to WFIKKN2 protein isoform 3 [Canis familiaris].
Length = 289
Score = 45.8 bits (107), Expect(2) = 2e-11
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 1086 CETFHYGGCMGNGNNFVSEKECLQTCRT--VEACSLPIVSGPCRGFFQLWA 1232
C TF +G C N N+F + + C+ C + + CSLP + GPC+ + WA
Sbjct: 66 CLTFTFGHCHRNRNHFETYEACMLACMSGPLAVCSLPALQGPCKAYAPRWA 116
Score = 42.0 bits (97), Expect(2) = 2e-11
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G+C F YGGC+GN N F S + C+E C P
Sbjct: 122 GQCQSFVYGGCEGNSNNFESREACEESCPFP 152
Score = 57.8 bits (138), Expect = 3e-08
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C L QGPC R+ YN S C++F YGGC GN NNF S + C ++C
Sbjct: 99 CSLPALQGPCKAYAPRWAYNSQSGQCQSFVYGGCEGNSNNFESREACEESC 149
>ref|XP_543019.2| PREDICTED: similar to Tissue factor pathway inhibitor precursor
(TFPI) (Lipoprotein-associated coagulation inhibitor)
(LACI) (Extrinsic pathway inhibitor) (EPI) [Canis
familiaris].
Length = 123
Score = 67.8 bits (164), Expect = 3e-11
Identities = 28/52 (53%), Positives = 34/52 (65%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCR 1166
CQL +GPC G RYFYN +S CE F YGGC GN NNF + + CL+ C+
Sbjct: 44 CQLPPGKGPCRGRFYRYFYNSTSSECEHFIYGGCQGNANNFETTEICLKICK 95
>ref|XP_532462.2| PREDICTED: similar to Tissue factor pathway inhibitor 2 precursor
(TFPI-2) (Placental protein 5) (PP5) [Canis familiaris].
Length = 234
Score = 57.4 bits (137), Expect(2) = 5e-11
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 966 GAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEK 1145
GAG P + ++C L GPC +I Y+Y+ + +C F YGGC GN NNF + +
Sbjct: 25 GAGAPASS----AETCLLPPDVGPCRALIPSYYYDRYTQSCLPFTYGGCRGNANNFETWE 80
Query: 1146 ECLQTCRTVE----ACSLPIVSGPC 1208
C + C +E C L + C
Sbjct: 81 ACDEACWRIEKVPKICRLEVNEEKC 105
Score = 29.3 bits (64), Expect(2) = 5e-11
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYC 1335
C F GGC N N+F E C +C
Sbjct: 121 CEKFLSGGCHSNENRFPDEAACMNFC 146
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC---RTVEAC 1181
C+L ++ C + YF+N +SM CE F GGC N N F E C+ C ++ C
Sbjct: 96 CRLEVNEEKCGENKEEYFFNLTSMTCEKFLSGGCHSNENRFPDEAACMNFCAPKKSPSFC 155
Query: 1182 SLPIVSGPC 1208
P G C
Sbjct: 156 YSPKDEGLC 164
Score = 35.8 bits (81), Expect(2) = 1e-09
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYC 1335
C F Y GC GN N F S K+CK C
Sbjct: 180 CEAFAYTGCGGNDNNFVSMKDCKNVC 205
Score = 53.9 bits (128), Expect = 4e-07
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
K C +G C + RY++N CE F Y GC GN NNFVS K+C C
Sbjct: 150 KSPSFCYSPKDEGLCSANVTRYYFNPRHRTCEAFAYTGCGGNDNNFVSMKDCKNVC 205
>ref|XP_544625.2| PREDICTED: similar to hepatocyte growth factor activator inhibitor 1
isoform 2 precursor [Canis familiaris].
Length = 561
Score = 65.1 bits (157), Expect = 2e-10
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 981 VADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQT 1160
V + E+ C G C G R++Y+ C++F YGGC+GN NN++ E+EC
Sbjct: 283 VLSAKQTEEYCLASNKVGRCRGSFPRWYYDPKEQICKSFVYGGCLGNKNNYLREEECKLA 342
Query: 1161 CRTVEACSL----PIVSGPC 1208
CR V+ S+ P+ SG C
Sbjct: 343 CRDVQGPSMDRHRPVCSGTC 362
Score = 56.6 bits (135), Expect = 6e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV 1172
G CL I R++YN S C F YGGC GN NNF E++CL +CR +
Sbjct: 425 GLCLENIPRWYYNPFSERCARFTYGGCYGNKNNFEEEQQCLASCRGI 471
>ref|XP_547215.2| PREDICTED: similar to WAP, follistatin/kazal, immunoglobulin, kunitz
and netrin domain containing 1 precursor [Canis
familiaris].
Length = 624
Score = 41.6 bits (96), Expect(2) = 7e-10
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
+C F YGGC+GNGN F S C++ C VP
Sbjct: 458 QCHPFVYGGCEGNGNNFESRASCEDACPVP 487
Score = 41.2 bits (95), Expect(2) = 7e-10
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 1086 CETFHYGGCMGNGNNFVSEKECLQTCR--TVEACSLPIVSGPCRGFFQLWA 1232
C TF GC G G F + + C Q C +AC LP V G C+G WA
Sbjct: 401 CMTFPVCGCDGGGRGFETYEACQQACARGPGDACVLPAVQGRCQGREARWA 451
Score = 53.1 bits (126), Expect = 7e-07
Identities = 29/69 (42%), Positives = 35/69 (50%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACS 1184
D+C L QG C G R+ Y+ C F YGGC GNGNNF S C +AC
Sbjct: 432 DACVLPAVQGRCQGREARWAYSPLLQQCHPFVYGGCEGNGNNFESRASC------EDACP 485
Query: 1185 LPIVSGPCR 1211
+P + PCR
Sbjct: 486 VP-RTPPCR 493
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,215,668
Number of extensions: 1723926
Number of successful extensions: 7897
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 7865
Number of HSP's successfully gapped: 54
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001624.1| protein AMBP preproprotein [Homo sapiens]. 495 e-159
Alignment gi|NP_783165.1| WAP, kazal, immunoglobulin, kunitz and NTR doma... 59 7e-16
Alignment gi|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens]. 79 1e-14
Alignment gi|NP_006278.1| tissue factor pathway inhibitor isoform a precu... 64 8e-13
Alignment gi|NP_001027452.1| tissue factor pathway inhibitor isoform b pr... 64 8e-13
Alignment gi|NP_066925.1| kunitz-type protease inhibitor 2 isoform a prec... 59 2e-12
Alignment gi|NP_444514.1| WAP, kazal, immunoglobulin, kunitz and NTR doma... 57 2e-12
Alignment gi|NP_000597.2| complement component C8 gamma chain precursor [... 71 3e-12
Alignment gi|NP_003701.1| kunitz-type protease inhibitor 1 isoform 2 prec... 69 1e-11
Alignment gi|NP_001027539.1| kunitz-type protease inhibitor 1 isoform 2 p... 69 1e-11
>ref|NP_001624.1| protein AMBP preproprotein [Homo sapiens].
Length = 352
Score = 495 bits (1274), Expect(2) = e-159
Identities = 233/304 (76%), Positives = 258/304 (84%)
Frame = +3
Query: 321 MRSXXXXXXXXXXXXXVSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFK 500
MRS VSA PV T P++IQVQENF++SRIYGKW+++A+GSTCPWLK+
Sbjct: 1 MRSLGALLLLLSACLAVSAGPVPTPPDNIQVQENFNISRIYGKWYNLAIGSTCPWLKKIM 60
Query: 501 DKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMES 680
D+MT+ TL+LGEGATE EIS+T T RKG+CE SGAYEKT TDGKFLYHKSKWNITMES
Sbjct: 61 DRMTVSTLVLGEGATEAEISMTSTRWRKGVCEETSGAYEKTDTDGKFLYHKSKWNITMES 120
Query: 681 YVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIF 860
YVVHTNYDEYAIFLTKKFSR HGPT+TAKLYGR PQLRE+LL++FR VA GVGIPEDSIF
Sbjct: 121 YVVHTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIF 180
Query: 861 TMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPC 1040
TM DRGECVPGEQEPEP L+ R RRAVLPQEEEGSG GQ V + +KKEDSCQLGYS GPC
Sbjct: 181 TMADRGECVPGEQEPEPILIPRVRRAVLPQEEEGSGGGQLVTEVTKKEDSCQLGYSAGPC 240
Query: 1041 LGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFF 1220
+GM RYFYNG+SMACETF YGGCMGNGNNFV+EKECLQTCRTV AC+LPIV GPCR F
Sbjct: 241 MGMTSRYFYNGTSMACETFQYGGCMGNGNNFVTEKECLQTCRTVAACNLPIVRGPCRAFI 300
Query: 1221 QLWA 1232
QLWA
Sbjct: 301 QLWA 304
Score = 87.4 bits (215), Expect(2) = e-159
Identities = 37/43 (86%), Positives = 41/43 (95%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLR 1371
AV+GKCVLF YGGCQGNGN+FYSEKEC+EYCGVPG+ DEELLR
Sbjct: 307 AVKGKCVLFPYGGCQGNGNKFYSEKECREYCGVPGDGDEELLR 349
>ref|NP_783165.1| WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein
2 [Homo sapiens].
Length = 576
Score = 58.9 bits (141), Expect(2) = 7e-16
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +3
Query: 909 PTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMAC 1088
P + R +A E +G P A+ K DS G Q R+ ++ + C
Sbjct: 301 PLSVVRGHQAAATSESSPNGTAFPAAECLKPPDSEDCGEEQ-------TRWHFDAQANNC 353
Query: 1089 ETFHYGGCMGNGNNFVSEKECLQTCRT--VEACSLPIVSGPCRGFFQLWA 1232
TF +G C N N+F + + C+ C + + ACSLP + GPC+ + WA
Sbjct: 354 LTFTFGHCHRNLNHFETYEACMLACMSGPLAACSLPALQGPCKAYAPRWA 403
Score = 44.3 bits (103), Expect(2) = 7e-16
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G+C F YGGC+GNGN F S + C+E C P
Sbjct: 409 GQCQSFVYGGCEGNGNNFESREACEESCPFP 439
Score = 59.3 bits (142), Expect = 9e-09
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +3
Query: 1008 SCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+C L QGPC R+ YN + C++F YGGC GNGNNF S + C ++C
Sbjct: 385 ACSLPALQGPCKAYAPRWAYNSQTGQCQSFVYGGCEGNGNNFESREACEESC 436
>ref|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens].
Length = 190
Score = 78.6 bits (192), Expect = 1e-14
Identities = 45/161 (27%), Positives = 72/161 (44%)
Frame = +3
Query: 405 IQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATEREISVTKTHRRK 584
+ VQ NF + G+WF + S WL+ K ++M ++ AT+ +++T T RK
Sbjct: 28 VSVQPNFQQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAP-ATDGGLNLTSTFLRK 86
Query: 585 GICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSRRHGPTLTA 764
CE + + + G + Y W T VV T+YD+YA+ ++ A
Sbjct: 87 NQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMA 146
Query: 765 KLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECV 887
LY R R L E+F G ED+I +P +C+
Sbjct: 147 TLYSRTQTPRAELKEKFTAFCKAQGFTEDTIVFLPQTDKCM 187
>ref|NP_006278.1| tissue factor pathway inhibitor isoform a precursor [Homo sapiens].
Length = 304
Score = 56.2 bits (134), Expect(2) = 8e-13
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEA---- 1178
C GPC ++KR+F+N + CE F YGGC GN N F S +EC + C A
Sbjct: 54 CAFKADDGPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRII 113
Query: 1179 -----------CSLPIVSGPCRGF 1217
C L G CRG+
Sbjct: 114 KTTLQQEKPDFCFLEEDPGICRGY 137
Score = 36.6 bits (83), Expect(2) = 8e-13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYC 1335
+C F YGGC GN N F + +ECK C
Sbjct: 149 QCERFKYGGCLGNMNNFETLEECKNIC 175
Score = 63.9 bits (154), Expect = 4e-10
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C L G C G I RYFYN + CE F YGGC+GN NNF + +EC C
Sbjct: 120 EKPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNIC 175
Score = 50.8 bits (120), Expect = 3e-06
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCR 1166
C +G C R++YN C F Y GC GN NNF S++ECL+ C+
Sbjct: 217 CLTPADRGLCRANENRFYYNSVIGKCRPFKYSGCGGNENNFTSKQECLRACK 268
>ref|NP_001027452.1| tissue factor pathway inhibitor isoform b precursor [Homo sapiens].
Length = 251
Score = 56.2 bits (134), Expect(2) = 8e-13
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEA---- 1178
C GPC ++KR+F+N + CE F YGGC GN N F S +EC + C A
Sbjct: 54 CAFKADDGPCKAIMKRFFFNIFTRQCEEFIYGGCEGNQNRFESLEECKKMCTRDNANRII 113
Query: 1179 -----------CSLPIVSGPCRGF 1217
C L G CRG+
Sbjct: 114 KTTLQQEKPDFCFLEEDPGICRGY 137
Score = 36.6 bits (83), Expect(2) = 8e-13
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYC 1335
+C F YGGC GN N F + +ECK C
Sbjct: 149 QCERFKYGGCLGNMNNFETLEECKNIC 175
Score = 63.9 bits (154), Expect = 4e-10
Identities = 28/56 (50%), Positives = 33/56 (58%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C L G C G I RYFYN + CE F YGGC+GN NNF + +EC C
Sbjct: 120 EKPDFCFLEEDPGICRGYITRYFYNNQTKQCERFKYGGCLGNMNNFETLEECKNIC 175
>ref|NP_066925.1| kunitz-type protease inhibitor 2 isoform a precursor [Homo sapiens].
Length = 252
Score = 58.5 bits (140), Expect(2) = 2e-12
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 39/114 (34%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV---- 1172
D C + G C + R++YN + +C+ F YGGC GN NN+++++ECL+ C TV
Sbjct: 36 DFCLVSKVVGRCRASMPRWWYNVTDGSCQLFVYGGCDGNSNNYLTKEECLKKCATVTENA 95
Query: 1173 -----------------------------------EACSLPIVSGPCRGFFQLW 1229
E C+ V+GPCR F W
Sbjct: 96 TGDLATSRNAADSSVPSAPRRQDSEDHSSDMFNYEEYCTANAVTGPCRASFPRW 149
Score = 33.1 bits (74), Expect(2) = 2e-12
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 1249 QGKCVLFNYGGCQGNGNQFYSEKECKEYC 1335
+ C F YGGC+GN N + SE+ C C
Sbjct: 155 RNSCNNFIYGGCRGNKNSYRSEEACMLRC 183
Score = 51.6 bits (122), Expect = 2e-06
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +3
Query: 984 ADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+D E+ C GPC R++++ +C F YGGC GN N++ SE+ C+ C
Sbjct: 124 SDMFNYEEYCTANAVTGPCRASFPRWYFDVERNSCNNFIYGGCRGNKNSYRSEEACMLRC 183
Query: 1164 -RTVEACSLPIVS 1199
R E LP+ S
Sbjct: 184 FRQQENPPLPLGS 196
>ref|NP_444514.1| WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein
1 precursor [Homo sapiens].
Length = 548
Score = 47.4 bits (111), Expect(2) = 2e-12
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV--EACSLPIVSGP 1205
GP + + Y+ C TF GC G F + + C Q C +AC LP V GP
Sbjct: 308 GPTSPHLVLWHYDPQRGGCMTFPARGCDGAARGFETYEACQQACARGPGDACVLPAVQGP 367
Query: 1206 CRGFFQLWA 1232
CRG+ WA
Sbjct: 368 CRGWEPRWA 376
Score = 43.9 bits (102), Expect(2) = 2e-12
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
+C F YGGC+GNGN F+S + C++ C VP
Sbjct: 383 QCHPFVYGGCEGNGNNFHSRESCEDACPVP 412
Score = 57.0 bits (136), Expect = 4e-08
Identities = 30/69 (43%), Positives = 37/69 (53%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACS 1184
D+C L QGPC G R+ Y+ C F YGGC GNGNNF S + C +AC
Sbjct: 357 DACVLPAVQGPCRGWEPRWAYSPLLQQCHPFVYGGCEGNGNNFHSRESC------EDACP 410
Query: 1185 LPIVSGPCR 1211
+P + PCR
Sbjct: 411 VP-RTPPCR 418
>ref|NP_000597.2| complement component C8 gamma chain precursor [Homo sapiens].
Length = 202
Score = 70.9 bits (172), Expect = 3e-12
Identities = 50/175 (28%), Positives = 76/175 (43%)
Frame = +3
Query: 375 ASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATERE 554
ASP+ T IQ + NFD + G W VAVGS C +L+ + TL + T
Sbjct: 30 ASPIST----IQPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQGTAMA 85
Query: 555 ISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKF 734
+S + + GIC + Y T G+FL + V T+Y +A+ ++
Sbjct: 86 VSTFR--KLDGICWQVRQLYGDTGVLGRFLLQARDARGAVHVVVAETDYQSFAVLYLERA 143
Query: 735 SRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGEQ 899
+ L+ KLY R + +S+L F + + ED IF P G C +Q
Sbjct: 144 GQ-----LSVKLYARSLPVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFCEAADQ 193
>ref|NP_003701.1| kunitz-type protease inhibitor 1 isoform 2 precursor [Homo sapiens].
Length = 513
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +3
Query: 954 EEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNF 1133
E+ + V + ED C G C G R++Y+ + C++F YGGC+GN NN+
Sbjct: 231 EDTANVTVTVLSTKQTEDYCLASNKVGRCRGSFPRWYYDPTEQICKSFVYGGCLGNKNNY 290
Query: 1134 VSEKECLQTCRTVEACSL----PIVSGPCR 1211
+ E+EC+ CR V+ S+ P+ SG C+
Sbjct: 291 LREEECILACRGVQGPSMERRHPVCSGTCQ 320
Score = 55.5 bits (132), Expect = 1e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV 1172
G C I R++YN S C F YGGC GN NNF E++CL++CR +
Sbjct: 382 GLCKESIPRWYYNPFSEHCARFTYGGCYGNKNNFEEEQQCLESCRGI 428
>ref|NP_001027539.1| kunitz-type protease inhibitor 1 isoform 2 precursor [Homo sapiens].
Length = 513
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +3
Query: 954 EEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNF 1133
E+ + V + ED C G C G R++Y+ + C++F YGGC+GN NN+
Sbjct: 231 EDTANVTVTVLSTKQTEDYCLASNKVGRCRGSFPRWYYDPTEQICKSFVYGGCLGNKNNY 290
Query: 1134 VSEKECLQTCRTVEACSL----PIVSGPCR 1211
+ E+EC+ CR V+ S+ P+ SG C+
Sbjct: 291 LREEECILACRGVQGPSMERRHPVCSGTCQ 320
Score = 55.5 bits (132), Expect = 1e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV 1172
G C I R++YN S C F YGGC GN NNF E++CL++CR +
Sbjct: 382 GLCKESIPRWYYNPFSEHCARFTYGGCYGNKNNFEEEQQCLESCRGI 428
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,027,277
Number of extensions: 1689190
Number of successful extensions: 7494
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 7461
Number of HSP's successfully gapped: 52
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031469.1| protein AMBP precursor [Mus musculus]. 450 e-144
Alignment gi|NP_861540.2| WAP, kazal, immunoglobulin, kunitz and NTR doma... 60 6e-14
Alignment gi|NP_081338.1| complement component C8 gamma chain precursor [... 75 1e-13
Alignment gi|NP_035706.1| tissue factor pathway inhibitor isoform a precu... 62 1e-13
Alignment gi|NP_001170791.1| tissue factor pathway inhibitor isoform b pr... 62 1e-13
Alignment gi|NP_001170790.1| tissue factor pathway inhibitor isoform b pr... 62 1e-13
Alignment gi|NP_058603.2| kunitz-type protease inhibitor 1 precursor [Mus... 73 7e-13
Alignment gi|NP_032989.2| prostaglandin-H2 D-isomerase [Mus musculus]. 69 7e-12
Alignment gi|NP_033390.1| tissue factor pathway inhibitor 2 precursor [Mu... 65 2e-10
Alignment gi|NP_001171319.1| WAP four-disulfide core domain 6A isoform 1 ... 60 3e-09
>ref|NP_031469.1| protein AMBP precursor [Mus musculus].
Length = 349
Score = 450 bits (1157), Expect(2) = e-144
Identities = 210/286 (73%), Positives = 243/286 (84%)
Frame = +3
Query: 375 ASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATERE 554
A P TLP DIQVQENF SRIYGKW+++AVGSTCPWL R KDKM++ TL+L EGATE E
Sbjct: 19 ADPASTLP-DIQVQENFSESRIYGKWYNLAVGSTCPWLSRIKDKMSVSTLVLQEGATETE 77
Query: 555 ISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKF 734
IS+T T R+G+CE I+GAY+KT DGKFLYHKSKWNIT+ESYVVHTNYDEYAIFLTKK
Sbjct: 78 ISMTSTRWRRGVCEEITGAYQKTDIDGKFLYHKSKWNITLESYVVHTNYDEYAIFLTKKS 137
Query: 735 SRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGEQEPEPT 914
S HG T+TAKLYGREPQLR+SLL+EF++VAL VGI E+SI MPDRGECVPG++E EPT
Sbjct: 138 SHHHGLTITAKLYGREPQLRDSLLQEFKDVALNVGISENSIIFMPDRGECVPGDREVEPT 197
Query: 915 LLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACET 1094
++RARRAVLPQE EGSG + KKEDSCQL YS+GPCLGM +RY+YNG+SMACET
Sbjct: 198 SIARARRAVLPQESEGSGTEPLITGTLKKEDSCQLNYSEGPCLGMQERYYYNGASMACET 257
Query: 1095 FHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFFQLWA 1232
F YGGC+GNGNNF+SEK+CLQTCRT+ AC+LPIV GPCR F +LWA
Sbjct: 258 FQYGGCLGNGNNFISEKDCLQTCRTIAACNLPIVQGPCRAFIKLWA 303
Score = 82.8 bits (203), Expect(2) = e-144
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLRS 1374
A QGKC+ F+YGGC+GNGN+FYSEKECKEYCGVPG+ EEL+RS
Sbjct: 306 AAQGKCIQFHYGGCKGNGNKFYSEKECKEYCGVPGDGYEELIRS 349
>ref|NP_861540.2| WAP, kazal, immunoglobulin, kunitz and NTR domain-containing protein
2 precursor [Mus musculus].
Length = 571
Score = 53.1 bits (126), Expect(2) = 6e-14
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +3
Query: 909 PTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMAC 1088
P + R +A E +G P + K DS G Q R+ ++ + C
Sbjct: 296 PLSVVRGGQARATSESSLNGTAFPATECLKPPDSEDCGEEQ-------TRWHFDAQANNC 348
Query: 1089 ETFHYGGCMGNGNNFVSEKECLQTCRT--VEACSLPIVSGPCRGFFQLWA 1232
TF +G C N N+F + + C+ C + + CSLP + GPC+ + WA
Sbjct: 349 LTFTFGHCHHNLNHFETYEACMLACMSGPLAICSLPALQGPCKAYVPRWA 398
Score = 43.1 bits (100), Expect(2) = 6e-14
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G C F YGGC+GNGN F S + C+E C P
Sbjct: 404 GLCQSFVYGGCEGNGNNFESREACEESCPFP 434
Score = 60.5 bits (145), Expect = 3e-09
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C L QGPC + R+ YN + C++F YGGC GNGNNF S + C ++C
Sbjct: 381 CSLPALQGPCKAYVPRWAYNSQTGLCQSFVYGGCEGNGNNFESREACEESC 431
>ref|NP_081338.1| complement component C8 gamma chain precursor [Mus musculus].
Length = 202
Score = 75.5 bits (184), Expect = 1e-13
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 1/177 (0%)
Frame = +3
Query: 372 SASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLG-EGATE 548
S SP+ T IQ Q NF + G W VAVGS+C +L+ + TL +GA
Sbjct: 29 STSPIST----IQAQVNFSAQKFAGTWLLVAVGSSCRFLQEQGHRAEATTLHAAPQGAA- 83
Query: 549 REISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTK 728
++V+ + GIC + +E T G+FL+ S+ + V T+Y +AI +
Sbjct: 84 --MAVSTFRKLDGICWQVRQLFENTGVPGRFLFQVSRARGPVHMVVAETDYQSFAILYLE 141
Query: 729 KFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGEQ 899
+ G L+ KLY R + +S+L+ F + ED I P G C +Q
Sbjct: 142 Q-----GRKLSVKLYVRSLPVNDSVLDVFERRVREANLTEDQILFFPKYGFCETADQ 193
>ref|NP_035706.1| tissue factor pathway inhibitor isoform a precursor [Mus musculus].
Length = 306
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Frame = +3
Query: 915 LLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACET 1094
LLS + EE + C + GPC MI+ YF+N + CE
Sbjct: 18 LLSLVPEFLNALSEEADDTDSELGSMKPLHTFCAMKADDGPCKAMIRSYFFNMYTHQCEE 77
Query: 1095 FHYGGCMGNGNNFVSEKECLQTC---------------RTVEACSLPIVSGPCRGFFQ 1223
F YGGC GN N F + +EC +TC + C L G CRG+ +
Sbjct: 78 FIYGGCEGNENRFDTLEECKKTCIPGYEKTAVKAASGAERPDFCFLEEDPGLCRGYMK 135
Score = 36.2 bits (82), Expect(2) = 1e-13
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
+C F YGGC GN N F + ECK+ C P
Sbjct: 145 QCERFVYGGCLGNRNNFETLDECKKICENP 174
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +3
Query: 918 LSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETF 1097
L ++ +P E+ A +++ D C L G C G +KRY YN + CE F
Sbjct: 93 LEECKKTCIPGYEK---TAVKAASGAERPDFCFLEEDPGLCRGYMKRYLYNNQTKQCERF 149
Query: 1098 HYGGCMGNGNNFVSEKECLQTC 1163
YGGC+GN NNF + EC + C
Sbjct: 150 VYGGCLGNRNNFETLDECKKIC 171
Score = 53.5 bits (127), Expect = 4e-07
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRT 1169
C G C +R++YN ++ C F+Y GC GN NNF + + CL++C+T
Sbjct: 225 CLQPADSGLCKASERRFYYNSATGKCHRFNYTGCGGNNNNFTTRRRCLRSCKT 277
>ref|NP_001170791.1| tissue factor pathway inhibitor isoform b precursor [Mus musculus].
Length = 235
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Frame = +3
Query: 915 LLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACET 1094
LLS + EE + C + GPC MI+ YF+N + CE
Sbjct: 18 LLSLVPEFLNALSEEADDTDSELGSMKPLHTFCAMKADDGPCKAMIRSYFFNMYTHQCEE 77
Query: 1095 FHYGGCMGNGNNFVSEKECLQTC---------------RTVEACSLPIVSGPCRGFFQ 1223
F YGGC GN N F + +EC +TC + C L G CRG+ +
Sbjct: 78 FIYGGCEGNENRFDTLEECKKTCIPGYEKTAVKAASGAERPDFCFLEEDPGLCRGYMK 135
Score = 36.2 bits (82), Expect(2) = 1e-13
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
+C F YGGC GN N F + ECK+ C P
Sbjct: 145 QCERFVYGGCLGNRNNFETLDECKKICENP 174
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +3
Query: 918 LSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETF 1097
L ++ +P E+ A +++ D C L G C G +KRY YN + CE F
Sbjct: 93 LEECKKTCIPGYEK---TAVKAASGAERPDFCFLEEDPGLCRGYMKRYLYNNQTKQCERF 149
Query: 1098 HYGGCMGNGNNFVSEKECLQTC 1163
YGGC+GN NNF + EC + C
Sbjct: 150 VYGGCLGNRNNFETLDECKKIC 171
>ref|NP_001170790.1| tissue factor pathway inhibitor isoform b precursor [Mus musculus].
Length = 235
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Frame = +3
Query: 915 LLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACET 1094
LLS + EE + C + GPC MI+ YF+N + CE
Sbjct: 18 LLSLVPEFLNALSEEADDTDSELGSMKPLHTFCAMKADDGPCKAMIRSYFFNMYTHQCEE 77
Query: 1095 FHYGGCMGNGNNFVSEKECLQTC---------------RTVEACSLPIVSGPCRGFFQ 1223
F YGGC GN N F + +EC +TC + C L G CRG+ +
Sbjct: 78 FIYGGCEGNENRFDTLEECKKTCIPGYEKTAVKAASGAERPDFCFLEEDPGLCRGYMK 135
Score = 36.2 bits (82), Expect(2) = 1e-13
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 1255 KCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
+C F YGGC GN N F + ECK+ C P
Sbjct: 145 QCERFVYGGCLGNRNNFETLDECKKICENP 174
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +3
Query: 918 LSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETF 1097
L ++ +P E+ A +++ D C L G C G +KRY YN + CE F
Sbjct: 93 LEECKKTCIPGYEK---TAVKAASGAERPDFCFLEEDPGLCRGYMKRYLYNNQTKQCERF 149
Query: 1098 HYGGCMGNGNNFVSEKECLQTC 1163
YGGC+GN NNF + EC + C
Sbjct: 150 VYGGCLGNRNNFETLDECKKIC 171
>ref|NP_058603.2| kunitz-type protease inhibitor 1 precursor [Mus musculus].
Length = 507
Score = 72.8 bits (177), Expect = 7e-13
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +3
Query: 906 EPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMA 1085
E T L + R Q EE + V + ED C Y G C G R++Y+
Sbjct: 209 EGTYLFQLTRTDSDQPEETANLTITVLTAKQTEDYCLASYKVGRCRGSFPRWYYDPKEQI 268
Query: 1086 CETFHYGGCMGNGNNFVSEKECLQTCRTVEACS----LPIVSGPC 1208
C++F +GGC+GN NN++ E+EC+ C+ V+ S P+ SG C
Sbjct: 269 CKSFTFGGCLGNKNNYLREEECMLACKDVQGISPKRHHPVCSGSC 313
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 1032 GPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV 1172
G C I R++YN S C F YGGC GN NNF E++CL++CR +
Sbjct: 376 GFCKENIPRWYYNPFSERCARFTYGGCYGNKNNFEEEQQCLESCRGI 422
>ref|NP_032989.2| prostaglandin-H2 D-isomerase [Mus musculus].
Length = 189
Score = 69.3 bits (168), Expect = 7e-12
Identities = 41/159 (25%), Positives = 67/159 (42%)
Frame = +3
Query: 411 VQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATEREISVTKTHRRKGI 590
VQ NF + G+W+ + S W + K + M ++ +TE +++T T RK
Sbjct: 30 VQPNFQQDKFLGRWYSAGLASNSSWFREKKAVLYMCKTVVAP-STEGGLNLTSTFLRKNQ 88
Query: 591 CEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSRRHGPTLTAKL 770
CE + G + Y VV NYDEYA+ ++ A L
Sbjct: 89 CETKIMVLQPAGAPGHYTYSSPHSGSIHSVSVVEANYDEYALLFSRGTKGPGQDFRMATL 148
Query: 771 YGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECV 887
Y R L++ L E+F + G+ E+ I +P +C+
Sbjct: 149 YSRTQTLKDELKEKFTTFSKAQGLTEEDIVFLPQPDKCI 187
>ref|NP_033390.1| tissue factor pathway inhibitor 2 precursor [Mus musculus].
Length = 230
Score = 64.7 bits (156), Expect = 2e-10
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVE----A 1178
C L GPC +I +++Y+ C F+YGGC+GN NNF S C QTC ++E
Sbjct: 36 CLLPLDAGPCQALIPKFYYDRDQQKCRRFNYGGCLGNANNFHSRDLCQQTCGSIEKVPPV 95
Query: 1179 CSLPIVSGPC-----RGFFQL 1226
C + + PC R FF L
Sbjct: 96 CRSELKTYPCDKPNIRFFFNL 116
>ref|NP_001171319.1| WAP four-disulfide core domain 6A isoform 1 precursor [Mus musculus].
Length = 146
Score = 60.5 bits (145), Expect = 3e-09
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +3
Query: 999 KEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEA 1178
++D C L GPCL + R++YN + C F YGGC GN NNF SE C C+ +
Sbjct: 83 RQDVCSLPQDPGPCLAYLPRWWYNQETDLCTEFIYGGCQGNPNNFPSEGICTVVCKKKQM 142
Query: 1179 CS 1184
S
Sbjct: 143 SS 144
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,848,330
Number of extensions: 1395549
Number of successful extensions: 6146
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 6114
Number of HSP's successfully gapped: 45
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157478.1| protein AMBP precursor [Sus scrofa]. 602 0.0
Alignment gi|XP_003131618.1| PREDICTED: WAP, kazal, immunoglobulin, kunit... 59 3e-14
Alignment gi|XP_003127156.1| PREDICTED: kunitz-type protease inhibitor 2-... 59 3e-14
Alignment gi|XP_003130196.1| PREDICTED: tissue factor pathway inhibitor 2... 58 2e-12
Alignment gi|NP_001128730.1| hypothetical protein LOC100155068 [Sus scrof... 68 1e-11
Alignment gi|NP_999036.1| uterine plasmin/trypsin inhibitor precursor [Su... 65 7e-11
Alignment gi|XP_003360065.1| PREDICTED: colostrum trypsin inhibitor-like ... 63 4e-10
Alignment gi|NP_001090921.1| complement component C8G [Sus scrofa]. 62 6e-10
Alignment gi|NP_999393.1| prostaglandin-H2 D-isomerase [Sus scrofa]. 58 2e-08
Alignment gi|NP_999537.1| amyloid beta A4 protein [Sus scrofa]. 55 1e-07
>ref|NP_001157478.1| protein AMBP precursor [Sus scrofa].
Length = 352
Score = 602 bits (1551), Expect(2) = 0.0
Identities = 291/304 (95%), Positives = 291/304 (95%)
Frame = +3
Query: 321 MRSXXXXXXXXXXXXXVSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFK 500
MRS VSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFK
Sbjct: 1 MRSLGTLLLLLTACLAVSASPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFK 60
Query: 501 DKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMES 680
DKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMES
Sbjct: 61 DKMTMGTLMLGEGATEREISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMES 120
Query: 681 YVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIF 860
YVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIF
Sbjct: 121 YVVHTNYDEYAIFLTKKFSRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIF 180
Query: 861 TMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPC 1040
TMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPC
Sbjct: 181 TMPDRGECVPGEQEPEPTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPC 240
Query: 1041 LGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFF 1220
LGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFF
Sbjct: 241 LGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSLPIVSGPCRGFF 300
Query: 1221 QLWA 1232
QLWA
Sbjct: 301 QLWA 304
Score = 100 bits (248), Expect(2) = 0.0
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLRS 1374
AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLRS
Sbjct: 307 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLRS 350
>ref|XP_003131618.1| PREDICTED: WAP, kazal, immunoglobulin, kunitz and NTR
domain-containing protein 2-like [Sus scrofa].
Length = 851
Score = 52.8 bits (125), Expect(2) = 3e-14
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +3
Query: 909 PTLLSRARRAVLPQEEEGSGAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMAC 1088
P + R + E +G P A+ K DS G Q R+ ++ + C
Sbjct: 576 PLSVVRGGQPSATAESSLNGTAFPAAECLKPPDSEDCGEEQ-------TRWHFDAQANNC 628
Query: 1089 ETFHYGGCMGNGNNFVSEKECLQTCR--TVEACSLPIVSGPCRGFFQLWA 1232
TF +G C N N+F + + C+ C + CSLP + GPC+ + WA
Sbjct: 629 LTFTFGHCHRNRNHFETYEACMLACMRGPLAVCSLPALQGPCKAYAPRWA 678
Score = 44.3 bits (103), Expect(2) = 3e-14
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 1252 GKCVLFNYGGCQGNGNQFYSEKECKEYCGVP 1344
G+C F YGGC+GNGN F S + C+E C P
Sbjct: 684 GQCQSFVYGGCEGNGNNFESREACEESCPFP 714
Score = 58.9 bits (141), Expect = 7e-09
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C L QGPC R+ YN + C++F YGGC GNGNNF S + C ++C
Sbjct: 661 CSLPALQGPCKAYAPRWAYNSQTGQCQSFVYGGCEGNGNNFESREACEESC 711
>ref|XP_003127156.1| PREDICTED: kunitz-type protease inhibitor 2-like isoform 1 [Sus
scrofa].
Length = 252
Score = 58.5 bits (140), Expect(2) = 3e-14
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 39/114 (34%)
Frame = +3
Query: 1005 DSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTV---- 1172
D CQ+ G C I R++YN + +C+ F YGGC GN NN+++++ECL C V
Sbjct: 36 DFCQVPKVVGRCRASIPRWWYNVTGGSCQQFVYGGCEGNDNNYMTKEECLAKCAGVTEST 95
Query: 1173 -----------------------------------EACSLPIVSGPCRGFFQLW 1229
E C+ V+GPCR F W
Sbjct: 96 INDLATSRNGADSSVPSVPRRQDSDDLTDDIINYEEYCTAKAVTGPCRAAFPRW 149
Score = 38.5 bits (88), Expect(2) = 3e-14
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 1243 AVQGKCVLFNYGGCQGNGNQFYSEKECKEYC 1335
A + C F YGGC+GN N ++S++EC + C
Sbjct: 153 AEKNSCDKFIYGGCRGNKNSYHSKEECMQRC 183
Score = 56.6 bits (135), Expect = 3e-08
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 987 DFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
D E+ C GPC R+++N +C+ F YGGC GN N++ S++EC+Q C
Sbjct: 125 DIINYEEYCTAKAVTGPCRAAFPRWYFNAEKNSCDKFIYGGCRGNKNSYHSKEECMQRC 183
>ref|XP_003130196.1| PREDICTED: tissue factor pathway inhibitor 2-like [Sus scrofa].
Length = 344
Score = 53.5 bits (127), Expect(2) = 2e-12
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC---RTVEAC 1181
C+L S+ C + + YF+N SSM CE F GGC GN N F+ E C+ C ++ C
Sbjct: 208 CRLEVSKRQCGELREEYFFNLSSMTCEKFLSGGCHGNANRFLDEATCMGFCAPKKSPSFC 267
Query: 1182 SLPIVSGPC 1208
P G C
Sbjct: 268 YSPKDEGLC 276
Score = 37.0 bits (84), Expect(2) = 2e-12
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYCGVPGEEDEELLRSL 1377
C F Y GC GN N F S K+CK C ++++++ R L
Sbjct: 292 CETFTYTGCGGNDNNFVSMKDCKRACVKALKKEKKMPRLL 331
Score = 57.4 bits (137), Expect(2) = 4e-12
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +3
Query: 939 VLPQEEEGSGAGQ-PVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCM 1115
+LP G+ G P A + C L +GPC ++ Y+Y+ + +C F YGGC
Sbjct: 123 LLPLLLVGTALGDAPRASPGNYSEICLLPPDEGPCRALVPSYYYDRYTQSCREFMYGGCE 182
Query: 1116 GNGNNFVSEKECLQTCRTVE----ACSLPIVSGPC 1208
GN NNF + + C + C +E C L + C
Sbjct: 183 GNANNFETWEACDEACWRIEKVPKICRLEVSKRQC 217
Score = 32.3 bits (72), Expect(2) = 4e-12
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1258 CVLFNYGGCQGNGNQFYSEKECKEYC 1335
C F GGC GN N+F E C +C
Sbjct: 233 CEKFLSGGCHGNANRFLDEATCMGFC 258
Score = 57.8 bits (138), Expect = 2e-08
Identities = 25/56 (44%), Positives = 31/56 (55%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
K C +G C + RY++N ACETF Y GC GN NNFVS K+C + C
Sbjct: 262 KSPSFCYSPKDEGLCSANVTRYYFNPRHKACETFTYTGCGGNDNNFVSMKDCKRAC 317
>ref|NP_001128730.1| hypothetical protein LOC100155068 [Sus scrofa].
Length = 303
Score = 68.2 bits (165), Expect = 1e-11
Identities = 31/56 (55%), Positives = 34/56 (60%)
Frame = +3
Query: 996 KKEDSCQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
+K D C L G C G I RYFYN S CE F YGGC+GN NNF S +EC TC
Sbjct: 118 EKPDFCFLEEDAGICRGYITRYFYNNQSKQCERFKYGGCLGNLNNFESLEECKNTC 173
Score = 59.7 bits (143), Expect = 4e-09
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
C + GPC M+KR+F+N ++ CE F YGGC GN N F S +EC + C
Sbjct: 50 CAMKADDGPCKAMMKRFFFNINTQQCEEFIYGGCEGNQNRFESLEECKEKC 100
Score = 52.8 bits (125), Expect = 5e-07
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCR 1166
C +G C +R++YN C F Y GC GN NNF S+K CL+TC+
Sbjct: 216 CLTPADRGLCQANERRFYYNSVIGKCRPFKYSGCGGNENNFTSKKACLKTCK 267
>ref|NP_999036.1| uterine plasmin/trypsin inhibitor precursor [Sus scrofa].
Length = 122
Score = 65.5 bits (158), Expect = 7e-11
Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Frame = +3
Query: 915 LLSRARRAVLPQEEEGS--GAGQPVADFSKKEDSCQLGYSQGPCLGMIKRYFYNGSSMAC 1088
LL A A P +EE S AG P C+ GPC RYFYN ++ C
Sbjct: 12 LLLGALVASTPGDEESSLVRAGPP--------GFCREPPYTGPCSAHFVRYFYNATTGLC 63
Query: 1089 ETFHYGGCMGNGNNFVSEKECLQTCRT 1169
++F YGGC G NNF+ EKECL TC T
Sbjct: 64 QSFVYGGCRGKQNNFMDEKECLHTCDT 90
>ref|XP_003360065.1| PREDICTED: colostrum trypsin inhibitor-like [Sus scrofa].
Length = 98
Score = 63.2 bits (152), Expect = 4e-10
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTC 1163
CQL GPC ++RYFYN +S CE F YGGC GN NNF + C + C
Sbjct: 38 CQLPPVGGPCKASLRRYFYNSTSAECELFMYGGCQGNANNFETTAICRRVC 88
>ref|NP_001090921.1| complement component C8G [Sus scrofa].
Length = 202
Score = 62.4 bits (150), Expect = 6e-10
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 1/175 (0%)
Frame = +3
Query: 378 SPVLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLG-EGATERE 554
SP+ T IQ + +FD + G W VAV S+C +L+ + +L + +GA
Sbjct: 31 SPIST----IQPKASFDAQQFAGTWLLVAVASSCRFLQEQGHRAEATSLHVAPQGAA--- 83
Query: 555 ISVTKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKF 734
++V+ + GIC + + T G+FL ++ V T+Y +AI ++
Sbjct: 84 MAVSTFRKLDGICWQVRQLFRDTGLPGRFLLQARGARGAVDVVVGETDYRSFAILYLERA 143
Query: 735 SRRHGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECVPGEQ 899
+ L+ KLY R + ES L F + G + ED I P G C +Q
Sbjct: 144 RQ-----LSVKLYARSLPVSESALSVFEQRVQGANLTEDHILFFPKYGFCDAADQ 193
>ref|NP_999393.1| prostaglandin-H2 D-isomerase [Sus scrofa].
Length = 189
Score = 57.8 bits (138), Expect = 2e-08
Identities = 42/168 (25%), Positives = 65/168 (38%)
Frame = +3
Query: 384 VLTLPNDIQVQENFDLSRIYGKWFHVAVGSTCPWLKRFKDKMTMGTLMLGEGATEREISV 563
VL P +Q NF + G+WF + S W K ++M ++ A + ++
Sbjct: 19 VLQTPAQASLQPNFQEDKFLGRWFTSGLASNSSWFLEKKKVLSMCKSLVAP-APDGGFNL 77
Query: 564 TKTHRRKGICEVISGAYEKTSTDGKFLYHKSKWNITMESYVVHTNYDEYAIFLTKKFSRR 743
T T RK C + G + Y +E VV T+Y YA+ T+
Sbjct: 78 TSTFLRKDQCVTRTLMLRPAGPPGCYSYTSPHGGSNLEVSVVETDYKNYALLHTESGPSP 137
Query: 744 HGPTLTAKLYGREPQLRESLLEEFREVALGVGIPEDSIFTMPDRGECV 887
A LY R ++ E+F A G ED I +P +C+
Sbjct: 138 GPAFRMATLYSRSQAPGAAVREKFTAFAKARGFTEDGIVFLPRNEKCL 185
>ref|NP_999537.1| amyloid beta A4 protein [Sus scrofa].
Length = 770
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/59 (40%), Positives = 34/59 (57%)
Frame = +3
Query: 1011 CQLGYSQGPCLGMIKRYFYNGSSMACETFHYGGCMGNGNNFVSEKECLQTCRTVEACSL 1187
C GPC MI R++++ + C F YGGC GN NNF +E+ C+ C +V + SL
Sbjct: 291 CSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSVMSQSL 349
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,757,705
Number of extensions: 1086677
Number of successful extensions: 4941
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4930
Number of HSP's successfully gapped: 32
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001975
(1468 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 866 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 866 bits (437), Expect = 0.0
Identities = 437/437 (100%)
Strand = Plus / Minus
Query: 1 tttctggagaagcttttgcagaggctgaacccagcctgggactgcccctggacccggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725675 tttctggagaagcttttgcagaggctgaacccagcctgggactgcccctggacccggttg 285725616
Query: 61 cccttggccagtggctccgctggaacagccaccctggcccctcgagaccgctgacccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725615 cccttggccagtggctccgctggaacagccaccctggcccctcgagaccgctgacccggc 285725556
Query: 121 cagggcaccacaagggatcgatcagctctggcctttgggccctgattggtccctactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725555 cagggcaccacaagggatcgatcagctctggcctttgggccctgattggtccctactgag 285725496
Query: 181 cagggcaaacagcagagtcatctacagccacaggccccttccccagctccagttcacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725495 cagggcaaacagcagagtcatctacagccacaggccccttccccagctccagttcacagc 285725436
Query: 241 tacctcaggcagggaggtggtggctgtcctgtccccgactgagcccgtgagtgacactcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725435 tacctcaggcagggaggtggtggctgtcctgtccccgactgagcccgtgagtgacactcg 285725376
Query: 301 aagcagaggagcctggagccatgcggagtctcgggaccctgctcctgctgctgaccgcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725375 aagcagaggagcctggagccatgcggagtctcgggaccctgctcctgctgctgaccgcct 285725316
Query: 361 gcctggccgtgagcgccagccctgtgctgacattgcccaatgacatccaggtgcaggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285725315 gcctggccgtgagcgccagccctgtgctgacattgcccaatgacatccaggtgcaggaga 285725256
Query: 421 acttcgacctgtctagg 437
|||||||||||||||||
Sbjct: 285725255 acttcgacctgtctagg 285725239
Score = 329 bits (166), Expect = 3e-87
Identities = 169/170 (99%)
Strand = Plus / Minus
Query: 1004 agattcctgccagctgggctactcccaaggcccttgcctgggcatgatcaagaggtattt 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285712938 agattcctgccagctgggctactcccaaggcccttgcctgggcatgatcaagaggtattt 285712879
Query: 1064 ctataatggctcatccatggcctgcgagaccttccactatggtggctgcatggggaacgg 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285712878 ctataatggctcatccatggcctgcgagaccttccactatggtggctgcatggggaacgg 285712819
Query: 1124 caataacttcgtctcggaaaaggagtgtctgcagacctgccggactgtgg 1173
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 285712818 caataacttcgtctcggagaaggagtgtctgcagacctgccggactgtgg 285712769
Score = 311 bits (157), Expect = 6e-82
Identities = 175/179 (97%), Gaps = 4/179 (2%)
Strand = Plus / Minus
Query: 1173 gaggcctgcagtctccccatcgtctccggcccctgccgaggttttttccagctctgggcg 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285712517 gaggcctgcagtctccccatcgtctccggcccctgccgaggttttttccagctctgggcg 285712458
Query: 1233 ttntgnnnatgccgtgcaggggaagtgtgttctcttcaactatgggggctgccagggcaa 1292
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285712457 tt-tg---atgccgtgcaggggaagtgtgttctcttcaactatgggggctgccagggcaa 285712402
Query: 1293 cggcaaccagttctactcggagaaggagtgcaaagagtactgcggcgtccccggtgaag 1351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285712401 cggcaaccagttctactcggagaaggagtgcaaagagtactgcggcgtccccggtgaag 285712343
Score = 287 bits (145), Expect = 9e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 437 gatctacgggaaatggttccacgtggccgtgggctccacctgcccctggctgaagaggtt 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285724045 gatctacgggaaatggttccacgtggccgtgggctccacctgcccctggctgaagaggtt 285723986
Query: 497 caaggacaagatgacgatgggcacgctgatgctgggagagggggcgacggagagggagat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285723985 caaggacaagatgacgatgggcacgctgatgctgggagagggggcgacggagagggagat 285723926
Query: 557 cagcgtgaccaagactcaccggagg 581
|||||||||||||||||||||||||
Sbjct: 285723925 cagcgtgaccaagactcaccggagg 285723901
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 658 aatggaacatcaccatggagtcctatgtggtccacaccaactatgatgagtatgccatat 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285720948 aatggaacatcaccatggagtcctatgtggtccacaccaactatgatgagtatgccatat 285720889
Query: 718 ttctgaccaagaagttcagccgccgccatggaccaacccttactgccaagctctacgg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285720888 ttctgaccaagaagttcagccgccgccatggaccaacccttactgccaagctctacgg 285720831
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 774 ggacgggagccgcagcttcgggaaagcctgctggaggagttcagggaggttgccctgggc 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285720008 ggacgggagccgcagcttcgggaaagcctgctggaggagttcagggaggttgccctgggc 285719949
Query: 834 gtgggcatcccggaggactccatctttacgatgcccgacagagg 877
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285719948 gtgggcatcccggaggactccatctttacgatgcccgacagagg 285719905
Score = 196 bits (99), Expect = 2e-47
Identities = 112/115 (97%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 1350 agaggatgaagagctgctgcgctccctccaactgaccagcccgcaggccacagggcagca 1409
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 285711292 agaggatgaagagctgctgcgctcc-tccaactgaccagtccgcaggccacagggcagca 285711234
Query: 1410 ggagggccagcgccagcgcctgcctggtgccccatggcaggttccaataaaaacc 1464
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 285711233 ggagggccagcgccagcgcctgcccggtgccccatggcaggttccaataaaaacc 285711179
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 923 gagagcccggcgggccgtgctgccccaggaagaggaaggatcaggagctggacaaccagt 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285714007 gagagcccggcgggccgtgctgccccaggaagaggaaggatcaggagctggacaaccagt 285713948
Query: 983 agcagatttcagcaagaaagaag 1005
|||||||||||||||||||||||
Sbjct: 285713947 agcagatttcagcaagaaagaag 285713925
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 579 aggaaaggtatctgtgaggtgatctctggggcttatgagaaaacaagcactgatggaaag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285722140 aggaaaggtatctgtgaggtgatctctggggcttatgagaaaacaagcactgatggaaag 285722081
Query: 639 ttcctctatcacaaatcca 657
|||||||||||||||||||
Sbjct: 285722080 ttcctctatcacaaatcca 285722062
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 875 aggagagtgtgtccctggggagcaggagcctgagcccaccctactctcg 923
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285719171 aggagagtgtgtccctggggagcaggagcctgagcccaccctactctcg 285719123
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,073,050
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 11
Length of query: 1468
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1447
Effective length of database: 2,808,413,156
Effective search space: 4063773836732
Effective search space used: 4063773836732
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)