Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [... 380 e-105
Alignment gi|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleop... 367 e-101
Alignment gi|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleop... 367 e-101
Alignment gi|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleop... 365 e-101
Alignment gi|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleop... 365 e-101
Alignment gi|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus]. 336 2e-92
Alignment gi|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [... 336 2e-92
Alignment gi|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/... 309 3e-84
Alignment gi|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleop... 274 9e-74
Alignment gi|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprot... 274 9e-74
>ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
taurus].
Length = 320
Score = 367 bits (942), Expect = e-101
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Bos taurus].
Length = 320
Score = 367 bits (942), Expect = e-101
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
taurus].
Length = 320
Score = 365 bits (937), Expect = e-101
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETT+ESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTNESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVS EDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSGEDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
RDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 XRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPCGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
Length = 320
Score = 365 bits (937), Expect = e-101
Identities = 180/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRV E KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVGELKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPCGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus].
Length = 380
Score = 336 bits (862), Expect = 2e-92
Identities = 160/185 (86%), Positives = 174/185 (94%)
Frame = +1
Query: 88 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 267
++ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVT
Sbjct: 23 AEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
Query: 268 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 447
Y+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++L
Sbjct: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 448 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 627
RDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KAL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 628 SKQEM 642
SKQEM
Sbjct: 203 SKQEM 207
Score = 68.6 bits (166), Expect = 9e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
>ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus].
Length = 380
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 631 KQEM 642
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 9e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus].
Length = 341
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus].
Length = 341
Score = 274 bits (701), Expect = 9e-74
Identities = 129/179 (72%), Positives = 157/179 (87%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD ++RSRG GFVT+++V E
Sbjct: 15 KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75 VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193
Score = 63.2 bits (152), Expect = 4e-10
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +1
Query: 121 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 300
L+KLF+GG+ +T + LR +FE++G + ++ D + R RGFGFVT+ + VD +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170
Query: 301 NARPHKVDGRVVEPKRAVSREDSQR 375
+ H ++G E ++A+S + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195
>ref|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1 [Bos
taurus].
Length = 341
Score = 274 bits (701), Expect = 9e-74
Identities = 129/179 (72%), Positives = 157/179 (87%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD ++RSRG GFVT+++V E
Sbjct: 15 KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75 VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193
Score = 63.2 bits (152), Expect = 4e-10
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +1
Query: 121 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 300
L+KLF+GG+ +T + LR +FE++G + ++ D + R RGFGFVT+ + VD +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170
Query: 301 NARPHKVDGRVVEPKRAVSREDSQR 375
+ H ++G E ++A+S + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,043,280
Number of extensions: 867924
Number of successful extensions: 2445
Number of sequences better than 1.0e-05: 83
Number of HSP's gapped: 2306
Number of HSP's successfully gapped: 125
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
Alignment gi|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
Alignment gi|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
>ref|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 1 [Canis
familiaris].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 5 [Canis
familiaris].
Length = 306
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/44 (63%), Positives = 28/44 (63%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQ 990
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQ 302
>ref|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 4 [Canis
familiaris].
Length = 330
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/44 (63%), Positives = 28/44 (63%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQ 990
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQ 302
>ref|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 2 [Canis
familiaris].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 4 [Canis
familiaris].
Length = 310
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 1e-09
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 366
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>ref|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 3 [Canis
familiaris].
Length = 268
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 1e-09
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 366
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>ref|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 2 [Canis
familiaris].
Length = 318
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 1e-09
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 366
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
Score = 49.3 bits (116), Expect = 6e-06
Identities = 28/61 (45%), Positives = 29/61 (47%)
Frame = +1
Query: 862 YNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXRR 1041
+NDFGNYNNQSSN GPMK QYFAKPRNQ RR
Sbjct: 260 HNDFGNYNNQSSNVGPMK--GRNFGGRSSGPYGGQYFAKPRNQGGYGSSSSSSSYSGSRR 317
Query: 1042 F 1044
F
Sbjct: 318 F 318
>ref|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 5 [Canis
familiaris].
Length = 274
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 621
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 622 ALSKQEM 642
AL KQEM
Sbjct: 181 ALWKQEM 187
>ref|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 4 [Canis
familiaris].
Length = 276
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 621
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 622 ALSKQEM 642
AL KQEM
Sbjct: 181 ALWKQEM 187
>ref|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 3 [Canis
familiaris].
Length = 276
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 621
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 622 ALSKQEM 642
AL KQEM
Sbjct: 181 ALWKQEM 187
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,721,188
Number of extensions: 734493
Number of successful extensions: 3708
Number of sequences better than 1.0e-05: 369
Number of HSP's gapped: 3119
Number of HSP's successfully gapped: 603
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-105
Alignment gi|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-105
Alignment gi|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-l... 370 e-102
Alignment gi|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-l... 370 e-102
Alignment gi|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Hom... 336 3e-92
Alignment gi|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 ... 309 3e-84
Alignment gi|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 ... 309 3e-84
Alignment gi|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Hom... 220 2e-57
Alignment gi|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isof... 165 8e-41
Alignment gi|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 i... 165 8e-41
>ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo
sapiens].
Length = 372
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 311 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
Query: 1039 RF 1044
RF
Sbjct: 371 RF 372
>ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo
sapiens].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 5e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
Length = 320
Score = 370 bits (949), Expect = e-102
Identities = 181/186 (97%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 625 LSKQEM 642
L KQEM
Sbjct: 181 LPKQEM 186
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/62 (48%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKP+NQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
Length = 320
Score = 370 bits (949), Expect = e-102
Identities = 181/186 (97%), Positives = 181/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 625 LSKQEM 642
L KQEM
Sbjct: 181 LPKQEM 186
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/62 (48%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKP+NQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens].
Length = 378
Score = 336 bits (861), Expect = 3e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 631 KQEM 642
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
sapiens].
Length = 353
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
sapiens].
Length = 341
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens].
Length = 305
Score = 220 bits (560), Expect = 2e-57
Identities = 106/178 (59%), Positives = 132/178 (74%)
Frame = +1
Query: 109 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 288
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 289 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 468
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 469 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
Score = 65.9 bits (159), Expect = 6e-11
Identities = 32/91 (35%), Positives = 50/91 (54%)
Frame = +1
Query: 94 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 273
S P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 274 TVEEVDAAMNARPHKVDGRVVEPKRAVSRED 366
+ D A + H + G VE K+AV +ED
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo
sapiens].
Length = 336
Score = 165 bits (417), Expect = 8e-41
Identities = 78/184 (42%), Positives = 121/184 (65%)
Frame = +1
Query: 88 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 267
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 268 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 447
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 448 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 627
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 628 SKQE 639
SK++
Sbjct: 240 SKEQ 243
Score = 59.3 bits (142), Expect = 6e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 375
E V M + H V E K A+S+E Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246
>ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo
sapiens].
Length = 287
Score = 165 bits (417), Expect = 8e-41
Identities = 78/184 (42%), Positives = 121/184 (65%)
Frame = +1
Query: 88 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 267
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 268 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 447
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 448 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 627
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 628 SKQE 639
SK++
Sbjct: 240 SKEQ 243
Score = 59.3 bits (142), Expect = 6e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 375
E V M + H V E K A+S+E Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,166,313
Number of extensions: 721953
Number of successful extensions: 2764
Number of sequences better than 1.0e-05: 144
Number of HSP's gapped: 2544
Number of HSP's successfully gapped: 200
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 i... 380 e-105
Alignment gi|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-105
Alignment gi|NP_001159443.1| predicted gene 5803 [Mus musculus]. 365 e-101
Alignment gi|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 2e-92
Alignment gi|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprot... 336 2e-92
Alignment gi|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 2e-92
Alignment gi|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleop... 335 3e-92
>ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus
musculus].
Length = 373
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 312 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 371
Query: 1039 RF 1044
RF
Sbjct: 372 RF 373
>ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus
musculus].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 4e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|NP_001159443.1| predicted gene 5803 [Mus musculus].
Length = 320
Score = 365 bits (938), Expect = e-101
Identities = 177/186 (95%), Positives = 182/186 (97%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSF+TTD+SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFQTTDKSLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDG+VVEPKRA+SR+DSQRPGAHL VKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGKVVEPKRAISRQDSQRPGAHLIVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKR FAFVTFDDHDSVD IVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDTIVIQKYHNVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/62 (48%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKP+NQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKRGNFGGRSSGSYGSGGQYFAKPQNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Mus
musculus].
Length = 362
Score = 336 bits (862), Expect = 2e-92
Identities = 164/206 (79%), Positives = 179/206 (86%)
Frame = +1
Query: 25 PFCPRTPPSKHRCNLLPTTVMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL 204
P CP+ + R + PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTL
Sbjct: 7 PGCPQPDSGRRRRRR-----GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTL 61
Query: 205 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
TDCVVMRDP TKRSRGFGFVTY+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGA
Sbjct: 62 TDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGA 121
Query: 385 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 564
HLTVKKIFVGGIKEDTEE++LRDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 565 KIVIQKYHTVNGHNCEVRKALSKQEM 642
KIV+QKYHT+NGHNCEV+KALSKQEM
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
>ref|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
16 [Mus musculus].
Length = 350
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 631 KQEM 642
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
[Mus musculus].
Length = 209
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 631 KQEM 642
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus
musculus].
Length = 357
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 631 KQEM 642
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
musculus].
Length = 379
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 631 KQEM 642
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
musculus].
Length = 379
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 631 KQEM 642
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Mus musculus].
Length = 332
Score = 335 bits (860), Expect = 3e-92
Identities = 159/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHK+DGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKIDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 631 KQEM 642
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,377,206
Number of extensions: 619435
Number of successful extensions: 2492
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 2312
Number of HSP's successfully gapped: 207
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [... 380 e-106
Alignment gi|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 2e-92
Alignment gi|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 2e-92
Alignment gi|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleop... 306 1e-83
Alignment gi|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleop... 290 7e-79
Alignment gi|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleop... 252 3e-67
Alignment gi|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleop... 252 3e-67
>ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa].
Length = 320
Score = 380 bits (976), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 85 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 264
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 265 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 444
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 445 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 624
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 625 LSKQEM 642
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 59.7 bits (143), Expect = 3e-09
Identities = 31/62 (50%), Positives = 31/62 (50%)
Frame = +1
Query: 859 SYNDFGNYNNQSSNFGPMKXXXXXXXXXXXXXXXXQYFAKPRNQXXXXXXXXXXXXXXXR 1038
SYNDFGNYNNQSSNFGPMK QYFAKPRNQ R
Sbjct: 259 SYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 318
Query: 1039 RF 1044
RF
Sbjct: 319 RF 320
>ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa].
Length = 357
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 631 KQEM 642
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 6e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa].
Length = 379
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 630
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 631 KQEM 642
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 6e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 384
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 353
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Sus scrofa].
Length = 353
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Sus scrofa].
Length = 341
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 447
Score = 306 bits (785), Expect = 1e-83
Identities = 142/179 (79%), Positives = 165/179 (92%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 109 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 168
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 169 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 228
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YGK++ IEI+TDR SGKKRGF F TFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 229 YGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 287
Score = 64.7 bits (156), Expect = 9e-11
Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +1
Query: 73 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 246
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 187 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKK 246
Query: 247 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 372
RGFGF T+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 247 RGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 288
>ref|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Sus
scrofa].
Length = 290
Score = 290 bits (743), Expect = 7e-79
Identities = 141/165 (85%), Positives = 151/165 (91%)
Frame = +1
Query: 91 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 270
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 271 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 450
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 451 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 585
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV Y
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVGGNY 188
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 307 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 486
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 487 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 639
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 354
Score = 252 bits (643), Expect = 3e-67
Identities = 120/179 (67%), Positives = 148/179 (82%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGL ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15 RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVV KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YG I+ IEI+ R SG+K F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191
Score = 58.2 bits (139), Expect = 8e-09
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = +1
Query: 124 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 303
+KLF+GG+ +TT+ LR +FE++GT+ ++R K + FGFVT+ + VD +
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169
Query: 304 ARPHKVDGRVVEPKRAVSREDSQ 372
+ H ++G + ++A+SR+ Q
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQ 192
>ref|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 354
Score = 252 bits (643), Expect = 3e-67
Identities = 120/179 (67%), Positives = 148/179 (82%)
Frame = +1
Query: 106 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 285
+E EQ RKLFIGGL ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15 RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74
Query: 286 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 465
VDAAM ARPH +DGRVV KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134
Query: 466 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 642
YG I+ IEI+ R SG+K F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191
Score = 59.3 bits (142), Expect = 4e-09
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Frame = +1
Query: 124 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 303
+KLF+GG+ +TT+ LR +FE++GT+ ++R K + FGFVT+ + VD +
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169
Query: 304 ARPHKVDGRVVEPKRAVSREDSQ-------RPGAHLTVKKIFVGG 417
+ H ++G + ++A+SR+ Q R G H+ I GG
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGDIPSGG 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,049,743
Number of extensions: 799691
Number of successful extensions: 1597
Number of sequences better than 1.0e-05: 69
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 105
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001986
(1089 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 952 0.0
Sscrofa_Chr01 892 0.0
Sscrofa_Chr06 454 e-125
gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754 440 e-121
Sscrofa_Chr14 440 e-121
Sscrofa_Chr05 418 e-114
Sscrofa_Chr15 412 e-112
gb|GL892941.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 301 4e-79
Sscrofa_Chr08 198 5e-48
Sscrofa_Chr16 151 9e-34
>Sscrofa_Chr13
|| Length = 218635234
Score = 952 bits (480), Expect = 0.0
Identities = 619/663 (93%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 27 tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 86
|||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192087823 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192087882
Query: 87 gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 146
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192087883 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192087942
Query: 147 gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 206
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 192087943 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192088001
Query: 207 agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 266
||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192088002 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192088060
Query: 267 gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 326
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192088061 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192088119
Query: 327 aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 386
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192088120 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192088179
Query: 387 cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 446
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192088180 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192088239
Query: 447 aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 506
|||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192088240 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192088299
Query: 507 cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 566
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192088300 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192088359
Query: 567 gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 626
|| |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192088360 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192088419
Query: 627 atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 686
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192088420 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192088479
Query: 687 ctt 689
|||
Sbjct: 192088480 ctt 192088482
Score = 952 bits (480), Expect = 0.0
Identities = 619/663 (93%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 27 tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 86
|||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192326803 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192326862
Query: 87 gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 146
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192326863 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192326922
Query: 147 gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 206
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 192326923 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192326981
Query: 207 agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 266
||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192326982 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192327040
Query: 267 gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 326
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192327041 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192327099
Query: 327 aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 386
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192327100 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192327159
Query: 387 cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 446
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192327160 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192327219
Query: 447 aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 506
|||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192327220 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192327279
Query: 507 cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 566
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192327280 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192327339
Query: 567 gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 626
|| |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192327340 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192327399
Query: 627 atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 686
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192327400 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192327459
Query: 687 ctt 689
|||
Sbjct: 192327460 ctt 192327462
Score = 351 bits (177), Expect = 5e-94
Identities = 220/233 (94%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 192088648 aagctacaatgattttggcaattacaacaatcaatcttcaaatcttggacccatgaaagg 192088707
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 192088708 aggacattttggaggcagaagttctggccgctctggtggtggaggccaatattttgccaa 192088767
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcag 1037
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 192088768 accacaaaaccaaggtggctatggcggttccagcagcagtagtagctatggcagtggcag 192088827
Query: 1038 aaggttttaatt-ttactgccaggaaacaaagcttaacaggaaaggaaagcca 1089
|||||||||||| ||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 192088828 aaggttttaattattactgccaggaaacaaagcttagcaggagaggagagcca 192088880
Score = 351 bits (177), Expect = 5e-94
Identities = 220/233 (94%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 192327628 aagctacaatgattttggcaattacaacaatcaatcttcaaatcttggacccatgaaagg 192327687
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 192327688 aggacattttggaggcagaagttctggccgctctggtggtggaggccaatattttgccaa 192327747
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcag 1037
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 192327748 accacaaaaccaaggtggctatggcggttccagcagcagtagtagctatggcagtggcag 192327807
Query: 1038 aaggttttaatt-ttactgccaggaaacaaagcttaacaggaaaggaaagcca 1089
|||||||||||| ||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 192327808 aaggttttaattattactgccaggaaacaaagcttagcaggagaggagagcca 192327860
Score = 73.8 bits (37), Expect = 2e-10
Identities = 92/109 (84%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 508 agtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaag 567
||||| ||||||||||| |||| |||||||| ||||||||| ||||| | || || ||
Sbjct: 155821422 agtgggaaaaagagagggtttg-ttttgtaatttttgatgatcatgatacagttgataaa 155821364
Query: 568 attgtcattcagaaataccacactgtgaatggccacaactgtgaagtga 616
| ||| |||||||||||||||||| | ||||| ||||| ||||||||||
Sbjct: 155821363 actgttattcagaaataccacactataaatgggcacaattgtgaagtga 155821315
>Sscrofa_Chr01
|| Length = 315321322
Score = 892 bits (450), Expect = 0.0
Identities = 618/674 (91%), Gaps = 10/674 (1%)
Strand = Plus / Minus
Query: 20 ttacgcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccacta 79
|||| ||||||||| ||||||||||||| ||||||||||||| | |||||||||||||
Sbjct: 276569468 ttactcctttctgctcccggacgccgccaagtaagcatcgttacattctcctccccacta 276569409
Query: 80 ccgtcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcg 139
|| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 276569408 ccatcatgtctaaatcagagtctcccaaagagcccgaacagttgcggaaggtcttcctcg 276569349
Query: 140 gaggtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaa 199
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 276569348 gaggtttgagctttgaaacaaccgatgagagactgaggagccattctgagcaatggggaa 276569289
Query: 200 cgctcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggt 259
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct: 276569288 cgctcacagactgtgtggtaaggagggacccaaacaccaagcgctccagaggcttcaggt 276569229
Query: 260 ttgtcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaagg 319
|||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 276569228 ttgtcacgtacaccactgtggaggaggtggacacagccatgaatacaaggccacacaagg 276569169
Query: 320 tggatggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctg 379
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 276569168 tggatggaagagttgtggaaccaaggagggctgtctcaagagaagattctcaaagacctg 276569109
Query: 380 gtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaac 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276569108 gtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaac 276569049
Query: 440 atcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacgg 499
|||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct: 276569048 atcatctaagagagtattttgaacagtatgggaaaattgaagtgattggaatcatgactg 276568989
Query: 500 acaggggcagtggca----aaaagagaggttttgcttttgtaacttttgatgaccatgac 555
|| |||||||||| |||| |||||||||||||||||||| || || ||||||||
Sbjct: 276568988 accaaggcagtggcaaaaaaaaaaagaggttttgcttttgtaaccttcaataaccatgac 276568929
Query: 556 tccgtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtg 615
|| || || |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 276568928 tctgt------gactgtcatccagaaataccacactgtgaatggccacaactatgaagtg 276568875
Query: 616 aggaaagccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagt 675
|||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 276568874 aggaaagctctatccaagaaagagatgtctaatgcttcatccagccaaagaggtcgaagt 276568815
Query: 676 ggttctggaaactt 689
||||||||||||||
Sbjct: 276568814 ggttctggaaactt 276568801
Score = 846 bits (427), Expect = 0.0
Identities = 600/656 (91%), Gaps = 5/656 (0%)
Strand = Plus / Plus
Query: 34 ccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcatgtctaag 93
|||| ||||| ||| ||||||||||| | || ||||||||| |||| ||| |||| |||
Sbjct: 293612865 cccccgacgctgccaagtaagcatcgatatatcctcctcccacctactgtcgtgtcgaag 293612924
Query: 94 tcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagcttt 153
|||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 293612925 tcagagtctcccaaggagcctgaactt----ggaagcttttcatcggaggtttgagcttt 293612980
Query: 154 gaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgt 213
||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||| |
Sbjct: 293612981 gaaacaaccgatgagggactgaggagccattctgagccatggggaacgctcacagaccat 293613040
Query: 214 gtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgcc 273
| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613041 gcggtgatgaggggcccaaacaccaagcgctccagaggcttcgggtttgtcacgtatgcc 293613100
Query: 274 actgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagtt 333
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613101 actgtgggggaggtggatgcagccatgaatgcaaggccacacaaggtggatggaagagtt 293613160
Query: 334 gtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaact 393
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct: 293613161 gtggaaccaaagagggc-gtctccagagaagattctcaacgacctggtgcccactgaact 293613219
Query: 394 gtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagat 453
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293613220 gtgaaaaagatttttgtcggtggcattaaagaagacactgaagaacatcacctaagaggt 293613279
Query: 454 tattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggc 513
||||||||| || |||||||| | ||||||||||||||||||| ||| | ||||| |||
Sbjct: 293613280 gattttgaaccgtgtgggaaaaccaaagtgattgaaatcatgactgactgaggcaggggc 293613339
Query: 514 aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtc 573
||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 293613340 aaaaagagaggttttgcttttctaacctttgatgaccatgactctgtagacaagattgtc 293613399
Query: 574 attcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaag 633
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 293613400 attcagaaataccacgtggtgaagggccacaactgtgaagtaaggaaagccctatccaag 293613459
Query: 634 caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 689
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 293613460 caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctagaaactt 293613515
Score = 311 bits (157), Expect = 4e-82
Identities = 215/233 (92%), Gaps = 1/233 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 293613684 aagctacagtgattttggcaattacaacaatcagtcttcaaattttggacccatgaaagg 293613743
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||| ||||||||||||| |||| |||||| ||||||||||||| ||||| |||||||||
Sbjct: 293613744 aggacattttggaggcaggagttatggcccctatggtggtggagtccaattctttgccaa 293613803
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcag 1037
||||| ||||||||||||||||| | |||||||||||||||| | |||||| ||||||||
Sbjct: 293613804 accacaaaaccaaggtggctatgacagttccagcagcagcagcagctatggtagtggcag 293613863
Query: 1038 aaggttttaatt-ttactgccaggaaacaaagcttaacaggaaaggaaagcca 1089
|||||||||||| ||||||||||||||||||||||| ||||| |||| |||||
Sbjct: 293613864 aaggttttaattattactgccaggaaacaaagcttagcaggagaggagagcca 293613916
Score = 299 bits (151), Expect = 2e-78
Identities = 209/227 (92%), Gaps = 1/227 (0%)
Strand = Plus / Minus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 276568632 aagctacgatgattttggcaattacaacagtcaatcttcaaattctggacccacgaaagt 276568573
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 276568572 aggaaattttggaggaagaagttctggcccctgaggtggtggaggccaatactttgccaa 276568513
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcag 1037
|||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||
Sbjct: 276568512 accatgaaaccaaggtggctatggcagttccagcagctgcagtagctatggcagtgggag 276568453
Query: 1038 aaggttttaatt-ttactgccaggaaacaaagcttaacaggaaagga 1083
|||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct: 276568452 aaggttttaattattactgccaggaaagaaagcttagcaggagagga 276568406
>Sscrofa_Chr06
|| Length = 157765593
Score = 454 bits (229), Expect = e-125
Identities = 414/471 (87%), Gaps = 6/471 (1%)
Strand = Plus / Minus
Query: 221 tgagggacccaaacaccaagcgctccagagg-tttcgggtttgtcacgtatgccactgtg 279
||||||||||| | ||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 39293791 tgagggacccagataccaagccttccagaggctttaagttttgtcacgtatgccactgtg 39293732
Query: 280 gaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaa 339
||| ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 39293731 gagaaggtggatggggccatgaatgcaaggccacacaagggggatgaaagagttgtggaa 39293672
Query: 340 ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 399
|||||| ||| |||||||||||||||||||| |||||||||| ||||| ||| |||
Sbjct: 39293671 ccaaagcaggctgtctcaagagaagattctcagggacctggtgcttacttagctgagaa- 39293613
Query: 400 aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 459
||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct: 39293612 --gatttttgttggtcgcattgaagaagacactgaaga-catcatctaagagattatttt 39293556
Query: 460 gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaa- 518
|||| ||||||||||| ||||||| |||||||||||| ||| | |||||| ||||||
Sbjct: 39293555 gaacggtatgggaaaactgaagtgactgaaatcatgactgactgaggcagtatcaaaaaa 39293496
Query: 519 gagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattca 578
|||||| |||||||| ||||| |||||||| |||||||| |||||| |||||||| |||
Sbjct: 39293495 gagaggctttgctttggtaacctttgatgaacatgactctgtagacgagattgtccttcg 39293436
Query: 579 gaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagcaaga 638
|||||||| |||||| ||||| |||||||||||||| || |||||| ||| |||||||||
Sbjct: 39293435 gaaatacctcactgtcaatggtcacaactgtgaagtaagtaaagccttattcaagcaaga 39293376
Query: 639 gatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 689
|||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 39293375 gatggctagtgcttcatccagccaaagaggtctaagtgcttctggaaactt 39293325
Score = 226 bits (114), Expect = 2e-56
Identities = 206/234 (88%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaatt-acaacaatcaatcttcaaattttggacccatgaaag 916
|||||||| |||| |||||||| |||| |||||||||||||||| || |||||||||||
Sbjct: 39293880 aagctacagtgatcatggcaatttacaataatcaatcttcaaattgtgcacccatgaaag 39293939
Query: 917 gaggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgcca 976
||||||| |||||||||||||| ||||||| | ||||| | ||||||||||||||||||
Sbjct: 39293940 gaggaaactttggaggcagaagctctggcctctgtggtgatagaggccaatactttgcca 39293999
Query: 977 aaccacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggca 1036
||||| || |||||||||||||||| || ||| ||||||||||| |||||||| |||||
Sbjct: 39294000 aaccatgagaccaaggtggctatggtggccccaacagcagcagtagctatggcattggca 39294059
Query: 1037 gaaggttttaatt-ttactgccaggaaacaaagcttaacaggaaaggaaagcca 1089
||||||||||||| ||| |||||||||||||| |||| ||||| |||| |||||
Sbjct: 39294060 gaaggttttaattattattgccaggaaacaaaacttagcaggagaggagagcca 39294113
>gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754
Length = 197135
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Minus
Query: 83 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 142
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 150407 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 150348
Query: 143 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 202
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 150347 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 150288
Query: 203 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 262
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 150287 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 150232
Query: 263 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 322
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 150231 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 150175
Query: 323 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 382
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 150174 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 150132
Query: 383 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 442
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 150131 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 150072
Query: 443 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 502
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 150071 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 150012
Query: 503 ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 561
| |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 150011 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 149952
Query: 562 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 621
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 149951 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 149908
Query: 622 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 681
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 149907 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 149848
Query: 682 ggaaactt 689
||||||||
Sbjct: 149847 ggaaactt 149840
Score = 246 bits (124), Expect = 2e-62
Identities = 204/228 (89%), Gaps = 2/228 (0%)
Strand = Plus / Minus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
|||||||| ||||| ||||| ||| |||| ||| |||||||||||||||||| |||||||
Sbjct: 149678 aagctacagtgattatggcagttaaaacagtcagtcttcaaattttggacccgtgaaagg 149619
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 149618 aggaaattttggaggcagaagttctggcccctatggtagtggaggccagtactttgccaa 149559
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaact-atggcagtggca 1036
|||| |||| |||||||||||||| || || ||||||| || || |||||||||||
Sbjct: 149558 accatgaaatcaaggtggctatgggattttcaacagcagccatagctgttggcagtggca 149499
Query: 1037 gaaggttttaatt-ttactgccaggaaacaaagcttaacaggaaagga 1083
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 149498 gaaggttttaattattactgccaggaaacaaagcttagcaggaaagga 149451
>Sscrofa_Chr14
|| Length = 153851969
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Minus
Query: 83 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 142
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 112311155 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112311096
Query: 143 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 202
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112311095 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112311036
Query: 203 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 262
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112311035 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112310980
Query: 263 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 322
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 112310979 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112310923
Query: 323 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 382
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 112310922 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112310880
Query: 383 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 442
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112310879 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112310820
Query: 443 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 502
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 112310819 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112310760
Query: 503 ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 561
| |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112310759 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112310700
Query: 562 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 621
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 112310699 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112310656
Query: 622 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 681
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112310655 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112310596
Query: 682 ggaaactt 689
||||||||
Sbjct: 112310595 ggaaactt 112310588
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Plus
Query: 83 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 142
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 112511905 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112511964
Query: 143 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 202
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112511965 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112512024
Query: 203 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 262
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112512025 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112512080
Query: 263 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 322
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 112512081 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112512137
Query: 323 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 382
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 112512138 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112512180
Query: 383 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 442
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112512181 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112512240
Query: 443 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 502
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 112512241 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112512300
Query: 503 ggggcagtggc-aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 561
| ||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112512301 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112512360
Query: 562 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 621
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 112512361 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112512404
Query: 622 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 681
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112512405 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112512464
Query: 682 ggaaactt 689
||||||||
Sbjct: 112512465 ggaaactt 112512472
Score = 246 bits (124), Expect = 2e-62
Identities = 204/228 (89%), Gaps = 2/228 (0%)
Strand = Plus / Minus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
|||||||| ||||| ||||| ||| |||| ||| |||||||||||||||||| |||||||
Sbjct: 112310426 aagctacagtgattatggcagttaaaacagtcagtcttcaaattttggacccgtgaaagg 112310367
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 112310366 aggaaattttggaggcagaagttctggcccctatggtagtggaggccagtactttgccaa 112310307
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaact-atggcagtggca 1036
|||| |||| |||||||||||||| || || ||||||| || || |||||||||||
Sbjct: 112310306 accatgaaatcaaggtggctatgggattttcaacagcagccatagctgttggcagtggca 112310247
Query: 1037 gaaggttttaatt-ttactgccaggaaacaaagcttaacaggaaagga 1083
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 112310246 gaaggttttaattattactgccaggaaacaaagcttagcaggaaagga 112310199
Score = 246 bits (124), Expect = 2e-62
Identities = 204/228 (89%), Gaps = 2/228 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
|||||||| ||||| ||||| ||| |||| ||| |||||||||||||||||| |||||||
Sbjct: 112512634 aagctacagtgattatggcagttaaaacagtcagtcttcaaattttggacccgtgaaagg 112512693
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 112512694 aggaaattttggaggcagaagttctggcccctatggtagtggaggccagtactttgccaa 112512753
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaact-atggcagtggca 1036
|||| |||| |||||||||||||| || || ||||||| || || |||||||||||
Sbjct: 112512754 accatgaaatcaaggtggctatgggattttcaacagcagccatagctgttggcagtggca 112512813
Query: 1037 gaaggttttaatt-ttactgccaggaaacaaagcttaacaggaaagga 1083
||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 112512814 gaaggttttaattattactgccaggaaacaaagcttagcaggaaagga 112512861
Score = 159 bits (80), Expect = 4e-36
Identities = 173/204 (84%)
Strand = Plus / Plus
Query: 291 tgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaagagggc 350
||||||| |||||||||||| || || |||||||||||||||| |||||||||| |||
Sbjct: 51614704 tgcagccgggaatgcaaggccacatcagatggatggaagagttgtagaaccaaagaaggc 51614763
Query: 351 cgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagatttttgt 410
||||| |||| ||| | |||| ||| |||||||| || |||||||||||||||| ||
Sbjct: 51614764 tgtctccagaggagactttcaaggactgggtgcccatttcactgtgaaaaagatttctgg 51614823
Query: 411 tggtggcattaaagaagacactgaagaacatcacctaagagattattttgaacagtatgg 470
||||||||||||||| |||| || |||||||||| | |||||||||||| ||||| |||
Sbjct: 51614824 tggtggcattaaagatgacatcgaggaacatcacccatgagattattttggacagtgtgg 51614883
Query: 471 gaaaatcgaagtgattgaaatcat 494
|| || |||||||| |||||||||
Sbjct: 51614884 gagaaccgaagtgactgaaatcat 51614907
Score = 119 bits (60), Expect = 3e-24
Identities = 126/148 (85%)
Strand = Plus / Plus
Query: 866 atgattttggcaattacaacaatcaatcttcaaattttggacccatgaaaggaggaaatt 925
|||||||||||| ||| || ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct: 51615323 atgattttggcagttataatgatcaaccttcaaattctggacccatgaaaagaggaaact 51615382
Query: 926 ttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaaaccacgaa 985
|||||| ||||||||||||||| | ||| |||| |||| |||||||||||| || ||
Sbjct: 51615383 ttggagacagaagttctggcccctgcagtgttggaagccagtactttgccaaaacatgac 51615442
Query: 986 accaaggtggctatggcggttccagcag 1013
| || |||||||||||| ||||||||||
Sbjct: 51615443 atcagggtggctatggcagttccagcag 51615470
Score = 89.7 bits (45), Expect = 3e-15
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 866 atgattttggcaattacaacaatcaatcttcaaattttggacccatgaaaggaggaaatt 925
|||||||||||| ||| || ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct: 51615218 atgattttggcagttataatgatcaaccttcaaattctggacccatgaaaagaggaaact 51615277
Query: 926 ttggaggcagaagttctggcc 946
|||||| ||||||||||||||
Sbjct: 51615278 ttggagacagaagttctggcc 51615298
>Sscrofa_Chr05
|| Length = 111506441
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 364 gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330904 gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 20330963
Query: 424 gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330964 gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 20331023
Query: 484 attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331024 attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 20331083
Query: 544 gatgaccatgactccgtagacaagattgtca 574
|||||||||||||||||||||||||||||||
Sbjct: 20331084 gatgaccatgactccgtagacaagattgtca 20331114
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 216 ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330626 ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 20330685
Query: 276 tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330686 tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 20330745
Query: 336 ggaaccaaagagggccgtctcaagagaag 364
|||||||||||||||||||||||||||||
Sbjct: 20330746 ggaaccaaagagggccgtctcaagagaag 20330774
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20332735 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 20332794
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20332795 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 20332854
Query: 978 accacgaaaccaaggt 993
||||||||||||||||
Sbjct: 20332855 accacgaaaccaaggt 20332870
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 98 agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330215 agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 20330274
Query: 158 caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330275 caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 20330334
Query: 218 taa 220
|||
Sbjct: 20330335 taa 20330337
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 575 ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331206 ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 20331265
Query: 635 aagagatggctagtgcttcatccagccaaagaggt 669
|||||||||||||||||||||||||||||||||||
Sbjct: 20331266 aagagatggctagtgcttcatccagccaaagaggt 20331300
Score = 182 bits (92), Expect = 3e-43
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 4 agactcgttcgttagattacgcctttctgcccccggacgccgccgagtaagcatcgttgt 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 20329576 agactcgttcgttagattactcctttctgcccccggacgccgccgagtaagcatcgttgt 20329635
Query: 64 aacctcctccccactaccgtcatgtctaagtcagag 99
||||||||||||||||||||||||||||||||||||
Sbjct: 20329636 aacctcctccccactaccgtcatgtctaagtcagag 20329671
Score = 119 bits (60), Expect = 3e-24
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 990 aggtggctatggcggttccagcagcagcagtaactatggcagtggcagaaggttttaatt 1049
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 20333116 aggtggctatggcggttccagcagcagcagtagctatggcagtggcagaaggttttaatt 20333175
Query: 1050 -ttactgccagg 1060
|||||||||||
Sbjct: 20333176 attactgccagg 20333187
>Sscrofa_Chr15
|| Length = 157681621
Score = 412 bits (208), Expect = e-112
Identities = 374/426 (87%), Gaps = 5/426 (1%)
Strand = Plus / Minus
Query: 167 agagtctgaggagccattttgagcaatggggaacgctcacagactgtgtggtaatgaggg 226
|||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||
Sbjct: 88607440 agagtctgaggagccattctgagaaatgggcaacaatcacagactgtgtggtaatgaggg 88607381
Query: 227 acccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccact--gtggagga 284
| | | ||||| ||||||||| ||||||||||| | | |||| | | ||||||
Sbjct: 88607380 aggct--cgccaagtcctccagaggcttcgggtttgttatgaatgctccgtggaggagga 88607323
Query: 285 ggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaa 344
||||||||||||||||||||| |||| ||||| ||||||||||||| ||||| | ||||
Sbjct: 88607322 ggtggatgcagccatgaatgcggggccacacaaagtggatggaagagctgtgggatcaaa 88607263
Query: 345 gagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagat 404
|||| | |||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 88607262 gaggcctgtctcaagagcagattctcaaagacctggtgctcccttaactgtgaaaaagat 88607203
Query: 405 ttttgttggtggcattaaagaagacactgaagaacatcacctaagagattattttgaaca 464
||||||||||||| |||| ||||||||||||||||| ||| || ||||||||||||||
Sbjct: 88607202 ttttgttggtggccttaagcgagacactgaagaacatcccctgagggattattttgaaca 88607143
Query: 465 gtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaagagagg 524
|||||||||||| ||||| | |||||||||||| ||| | ||||||||||||||||||||
Sbjct: 88607142 gtatgggaaaattgaagt-actgaaatcatgactgactgaggcagtggcaaaaagagagg 88607084
Query: 525 ttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattcagaaata 584
|||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 88607083 ctttgcttttgtaacctctgatgaccatgactcggtagacaagattgtcattcagaaata 88607024
Query: 585 ccacac 590
||||||
Sbjct: 88607023 ccacac 88607018
Score = 77.8 bits (39), Expect = 1e-11
Identities = 144/179 (80%)
Strand = Plus / Plus
Query: 376 cctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaa 435
||||||||||| |||| ||||| || |||||||||||||| |||||||||||||| ||
Sbjct: 92420504 cctggtgcccatctaacagtgaagaaaatttttgttggtggtattaaagaagacacagag 92420563
Query: 436 gaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatg 495
||| | | | ||||| || |||||| ||||||| ||||| ||| || ||| | |||
Sbjct: 92420564 gaatacaatttgagagactactttgaaaagtatggcaaaattgaaaccatagaagttatg 92420623
Query: 496 acggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatga 554
|||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 92420624 gaagacaggcagagtgggaaaaagagaggatttgcttttgtaactttcgatgatcatga 92420682
Score = 75.8 bits (38), Expect = 4e-11
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 389 taactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaa 448
|||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||| || || |
Sbjct: 59811159 taactgtgaagaagctatttgttggtggaattaaagaagatactgaggaacaccatctta 59811218
Query: 449 gagattattttgaacagtatgggaaa 474
||||||| ||||| |||||||||||
Sbjct: 59811219 gagattactttgaggagtatgggaaa 59811244
>gb|GL892941.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1756
Length = 17775
Score = 301 bits (152), Expect = 4e-79
Identities = 201/216 (93%), Gaps = 1/216 (0%)
Strand = Plus / Plus
Query: 858 aagctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaagg 917
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 7882 aagctacaatgattttggcaattacaacaatcaatcttcaagttttggacccgtgaaagg 7941
Query: 918 aggaaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaa 977
|||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 7942 aggaaattttggcgacagaagttctggcccctatggtggtagaggccaatactttgccaa 8001
Query: 978 accacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcag 1037
|||| |||||||| ||||||||| | |||||||||||||||||| |||| ||||||||||
Sbjct: 8002 accatgaaaccaaagtggctatgacagttccagcagcagcagtagctatagcagtggcag 8061
Query: 1038 aaggttttaatt-ttactgccaggaaacaaagctta 1072
|| ||||||||| | |||||||||||||||||||||
Sbjct: 8062 aaagttttaattatcactgccaggaaacaaagctta 8097
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 600 ccacaactgtgaagtgaggaaagccctatccaagcaagaga 640
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 7593 ccacaactgtgaagtgaggaaagccctatccaagcaagaga 7633
>Sscrofa_Chr08
|| Length = 148491826
Score = 198 bits (100), Expect = 5e-48
Identities = 166/185 (89%), Gaps = 6/185 (3%)
Strand = Plus / Plus
Query: 887 atcaatcttcaaattttggacccatgaaaggaggaaattttggaggcagaagttctggcc 946
|||||||||||||||| ||||||||| |||||||||| |||||||||| | ||||
Sbjct: 34649283 atcaatcttcaaattt-ggacccatggaaggaggaaactttggaggcaataa----ggcc 34649337
Query: 947 cttatggtggtggaggccaatactttgccaaaccacgaaaccaaggtggctatggcggtt 1006
| | |||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 34649338 cctgtggtggtggaggccaatactttgccaaaccacaaaaccaaggtggaaatggtggtg 34649397
Query: 1007 ccagcagcagcagtaactatggcagtggcagaaggttttaatt-ttactgccaggaaaca 1065
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 34649398 ccagcagcagcagtagctatggcagtggcagaaggttttaattattactgccaggaaaca 34649457
Query: 1066 aagct 1070
|||||
Sbjct: 34649458 aagct 34649462
Score = 188 bits (95), Expect = 4e-45
Identities = 217/255 (85%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 433 gaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatc 492
|||| ||||||||| |||||| | || |||||| |||||||| |||||||||||||||
Sbjct: 34648560 gaaggacatcacctgagagatgacttccaacagtgtgggaaaagtgaagtgattgaaatc 34648619
Query: 493 atgacggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccat 552
||||| ||| ||||||| ||||||||||| |||||||||||||| | ||||||||||
Sbjct: 34648620 atgactgacccaggcagtgagaaaaagagaggctttgcttttgtaacctctgatgaccat 34648679
Query: 553 gactccgtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaa 612
||||| | || ||||| |||| |||||||||| |||| || |||||||||||| ||||
Sbjct: 34648680 gactctgcaggcaagactgtccttcagaaatatcaca-tgcaaatggccacaacggtgat 34648738
Query: 613 gtgaggaaagccctatccaag-caagagatggctagtgcttcatccagccaaagaggtcg 671
|| ||||| |||| ||||||| ||||||||||||||||||||| | |||||| |||||
Sbjct: 34648739 gtaaggaaggccccatccaagccaagagatggctagtgcttcacctggccaaaaaggtca 34648798
Query: 672 aagtggttctggaaa 686
|||||||||||||||
Sbjct: 34648799 aagtggttctggaaa 34648813
Score = 180 bits (91), Expect = 1e-42
Identities = 336/413 (81%), Gaps = 6/413 (1%)
Strand = Plus / Plus
Query: 24 gcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgt 83
||||||||||| || ||||| || ||||||| || || | |||| |||||||| ||||
Sbjct: 34647863 gcctttctgcctgcgaacgccacccagtaagcctcattatggcctcttccccactgccgt 34647922
Query: 84 catgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggagg 143
|| || ||||| ||||||||||||||||| ||| |||||| ||||| |||||| || |
Sbjct: 34647923 cacatccaagtccgagtctcccaaagagccagaatagctgcagaagcgcttcattagatg 34647982
Query: 144 tttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgct 203
| |||| ||| ||||||| ||| ||||||||| |||||||| |||||||||||||| |||
Sbjct: 34647983 tgtgagttttcaaacaactgataagagtctgaagagccattgtgagcaatggggaaggct 34648042
Query: 204 cacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgt 263
||||| | |||| | | |||| |||||||||||||| ||||||| | | ||||||||
Sbjct: 34648043 cacaggcagtgtagcgacgaggaacccaaacaccaagtgctccagcagctctgggtttgt 34648102
Query: 264 cacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgga 323
|||||||| | |||||||||| | || ||||||||||||||||||||| ||| |||||
Sbjct: 34648103 cacgtatgaccctgtggagga-gagggtgcagccatgaatgcaaggccaggcaaagtgga 34648161
Query: 324 tggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgc 383
|| |||||| |||| ||| | |||| ||||||||||||||||| | |||||
Sbjct: 34648162 catcagtgttgtgaaacc--agaaaatcatctc--gagaagattctcaaagaaccggtgc 34648217
Query: 384 ccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaag 436
|||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 34648218 ccactttgctgtgaaaaaga-agctgtcggtggcattaaagaagacactgaag 34648269
>Sscrofa_Chr16
|| Length = 86898991
Score = 151 bits (76), Expect = 9e-34
Identities = 151/175 (86%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 340 ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 399
|||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 68793851 ccaaagagggatgtgtcaagagaagattctcaaagaccaggtgcccaattaacagtgaaa 68793910
Query: 400 aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 459
| || ||||||||| ||||| ||||||||||||||| ||| ||| ||||| ||||||
Sbjct: 68793911 aggacttttgttggcggcat--cagaagacactgaagagcattacccaagaggttatttc 68793968
Query: 460 gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggca 514
|| |||| || ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 68793969 gagcagtgtgcgaaaatcgaagtgattgaaatcatgactgaccaaggcagtggca 68794023
Score = 139 bits (70), Expect = 4e-30
Identities = 181/217 (83%), Gaps = 2/217 (0%)
Strand = Plus / Minus
Query: 861 ctacaatgattttggcaattacaacaatcaatcttcaaattttggacccatgaaaggagg 920
|||||||| ||||| |||| |||||| | |||||||||||||||||||| | ||||||
Sbjct: 32503375 ctacaatggctttggtaattgtaacaataagtcttcaaattttggacccataagaggagg 32503316
Query: 921 aaattttggaggcagaagttctggcccttatggtggtggaggccaatactttgccaaacc 980
||| |||||||||||||||| ||| || | || || ||||||||| | ||||||| |||
Sbjct: 32503315 aaactttggaggcagaagttttggtccctgtgacggcggaggccaaaattttgccagacc 32503256
Query: 981 acgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggcagaag 1040
| |||||| ||||| ||| || |||||| ||||||||||| ||||| |||||| ||||
Sbjct: 32503255 gcaaaaccagggtggatatagcagttccaacagcagcagtagctatgaaagtggctgaag 32503196
Query: 1041 gttttaattttactgccaggaaacaaagcttaacagg 1077
||||||| | |||| |||||||||||||||| ||||
Sbjct: 32503195 gttttaa--tgactgacaggaaacaaagcttaccagg 32503161
Score = 121 bits (61), Expect = 8e-25
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 284 aggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaa 343
||||| ||||||||||| ||| |||||| | |||||||||||||||||||| | ||||||
Sbjct: 32505349 aggtgaatgcagccatgcatgtaaggccacccaaggtggatggaagagttgggaaaccaa 32505290
Query: 344 agagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaaga 403
|| | | || |||||||| ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 32505289 agggcactgtttcaagagaggattctcaaagacttggggcccacttaactgtganaaaga 32505230
Query: 404 tttt 407
||||
Sbjct: 32505229 tttt 32505226
Score = 77.8 bits (39), Expect = 1e-11
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 449 gagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggca 508
|||||||||||||||||||||||||||| ||||||||||| |||| || ||| | ||||
Sbjct: 32503771 gagattattttgaacagtatgggaaaattgaagtgattgatatcacaactgacggaggca 32503712
Query: 509 gtggcaa 515
|||||||
Sbjct: 32503711 gtggcaa 32503705
Score = 69.9 bits (35), Expect = 3e-09
Identities = 95/114 (83%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 976 aaaccacgaaaccaaggtggctatggcggttccagcagcagcagtaactatggcagtggc 1035
|||||| ||||||||||||| | || | ||||||||||| ||||| ||| | | |||||
Sbjct: 68795505 aaaccatgaaaccaaggtggttgtgacagttccagcagctgcagtgactgtaacggtggc 68795564
Query: 1036 agaaggttttaattttactgccaggaaacaaagcttaacaggaaaggaaagcca 1089
||| |||||||| |||||||||||||| || ||||| ||||| |||| |||||
Sbjct: 68795565 agatggttttaa--ttactgccaggaaataatgcttagcaggagaggagagcca 68795616
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 631 aagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 689
|||||| | ||||||||||||||||||||||||||| | | |||||||||| ||||||
Sbjct: 32503599 aagcaaaaaatggctagtgcttcatccagccaaagaagccctagtggttctgcaaactt 32503541
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,113,555
Number of extensions: 307
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 63
Length of query: 1089
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1068
Effective length of database: 2,808,413,156
Effective search space: 2999385250608
Effective search space used: 2999385250608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)