Animal-Genome cDNA 20110601C-001987


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [...   380   e-106
Alignment   gi|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleop...   367   e-102
Alignment   gi|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleop...   367   e-102
Alignment   gi|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleop...   365   e-101
Alignment   gi|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleop...   365   e-101
Alignment   gi|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus].          336   2e-92
Alignment   gi|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [...   336   2e-92
Alignment   gi|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/...   309   3e-84
Alignment   gi|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleop...   274   7e-74
Alignment   gi|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprot...   274   7e-74

>ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
          Length = 320

 Score =  380 bits (976), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
           taurus].
          Length = 320

 Score =  367 bits (942), Expect = e-102
 Identities = 179/186 (96%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
           [Bos taurus].
          Length = 320

 Score =  367 bits (942), Expect = e-102
 Identities = 179/186 (96%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
           taurus].
          Length = 320

 Score =  365 bits (937), Expect = e-101
 Identities = 179/186 (96%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETT+ESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTNESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVS EDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSGEDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
            RDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 XRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
          Length = 320

 Score =  365 bits (937), Expect = e-101
 Identities = 180/186 (96%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRV E KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVGELKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus].
          Length = 380

 Score =  336 bits (862), Expect = 2e-92
 Identities = 160/185 (86%), Positives = 174/185 (94%)
 Frame = +1

Query: 67  SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
           ++   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVT
Sbjct: 23  AEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82

Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
           Y+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++L
Sbjct: 83  YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142

Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
           RDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KAL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202

Query: 607 SKQEM 621
           SKQEM
Sbjct: 203 SKQEM 207



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212


>ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus].
          Length = 380

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 610 KQEM 621
           KQEM
Sbjct: 204 KQEM 207



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus].
          Length = 341

 Score =  309 bits (791), Expect = 3e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 81  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>ref|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
           taurus].
          Length = 341

 Score =  274 bits (701), Expect = 7e-74
 Identities = 129/179 (72%), Positives = 157/179 (87%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD  ++RSRG GFVT+++V E
Sbjct: 15  KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75  VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS  EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 29/85 (34%), Positives = 52/85 (61%)
 Frame = +1

Query: 100 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 279
           L+KLF+GG+  +T +  LR +FE++G +    ++ D  + R RGFGFVT+   + VD  +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170

Query: 280 NARPHKVDGRVVEPKRAVSREDSQR 354
             + H ++G   E ++A+S  + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195


>ref|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1 [Bos
           taurus].
          Length = 341

 Score =  274 bits (701), Expect = 7e-74
 Identities = 129/179 (72%), Positives = 157/179 (87%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD  ++RSRG GFVT+++V E
Sbjct: 15  KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75  VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS  EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193



 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 29/85 (34%), Positives = 52/85 (61%)
 Frame = +1

Query: 100 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 279
           L+KLF+GG+  +T +  LR +FE++G +    ++ D  + R RGFGFVT+   + VD  +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170

Query: 280 NARPHKVDGRVVEPKRAVSREDSQR 354
             + H ++G   E ++A+S  + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,334,834
Number of extensions: 737867
Number of successful extensions: 2173
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 121
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear rib...   380   e-105
Alignment   gi|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear rib...   380   e-105
Alignment   gi|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear rib...   380   e-105
Alignment   gi|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear rib...   380   e-105
Alignment   gi|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear rib...   346   2e-95
Alignment   gi|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear rib...   346   2e-95
Alignment   gi|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear rib...   346   2e-95
Alignment   gi|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear rib...   345   4e-95
Alignment   gi|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear rib...   345   4e-95
Alignment   gi|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear rib...   345   4e-95

>ref|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 1 [Canis
           familiaris].
          Length = 320

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 5 [Canis
           familiaris].
          Length = 306

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 4 [Canis
           familiaris].
          Length = 330

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 2 [Canis
           familiaris].
          Length = 320

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 4 [Canis
           familiaris].
          Length = 310

 Score =  346 bits (888), Expect = 2e-95
 Identities = 171/186 (91%), Positives = 175/186 (94%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY  VEEVD AM+ARPHKVDGRVVEPKR  S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61  TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186



 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P    SK +S +    L  +K+F GG+  +T +  LR +FEQ+G +    +M D  + + 
Sbjct: 86  PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
           RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185


>ref|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 3 [Canis
           familiaris].
          Length = 268

 Score =  346 bits (888), Expect = 2e-95
 Identities = 171/186 (91%), Positives = 175/186 (94%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY  VEEVD AM+ARPHKVDGRVVEPKR  S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61  TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186



 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P    SK +S +    L  +K+F GG+  +T +  LR +FEQ+G +    +M D  + + 
Sbjct: 86  PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
           RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185


>ref|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) isoform 2 [Canis
           familiaris].
          Length = 318

 Score =  346 bits (888), Expect = 2e-95
 Identities = 171/186 (91%), Positives = 175/186 (94%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY  VEEVD AM+ARPHKVDGRVVEPKR  S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61  TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186



 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P    SK +S +    L  +K+F GG+  +T +  LR +FEQ+G +    +M D  + + 
Sbjct: 86  PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
           RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185


>ref|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP) isoform 5 [Canis
           familiaris].
          Length = 274

 Score =  345 bits (885), Expect = 4e-95
 Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF 
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
           L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180

Query: 601 ALSKQEM 621
           AL KQEM
Sbjct: 181 ALWKQEM 187


>ref|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP) isoform 4 [Canis
           familiaris].
          Length = 276

 Score =  345 bits (885), Expect = 4e-95
 Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF 
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
           L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180

Query: 601 ALSKQEM 621
           AL KQEM
Sbjct: 181 ALWKQEM 187


>ref|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP) isoform 3 [Canis
           familiaris].
          Length = 276

 Score =  345 bits (885), Expect = 4e-95
 Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF 
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
           L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180

Query: 601 ALSKQEM 621
           AL KQEM
Sbjct: 181 ALWKQEM 187


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,764,665
Number of extensions: 602759
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 364
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 573
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isof...   380   e-105
Alignment   gi|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isof...   380   e-105
Alignment   gi|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-l...   370   e-102
Alignment   gi|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-l...   370   e-102
Alignment   gi|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Hom...   336   2e-92
Alignment   gi|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 ...   309   3e-84
Alignment   gi|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 ...   309   3e-84
Alignment   gi|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Hom...   220   2e-57
Alignment   gi|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isof...   165   6e-41
Alignment   gi|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 i...   165   6e-41

>ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo
           sapiens].
          Length = 372

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo
           sapiens].
          Length = 320

 Score =  380 bits (976), Expect = e-105
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
          Length = 320

 Score =  370 bits (949), Expect = e-102
 Identities = 181/186 (97%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 604 LSKQEM 621
           L KQEM
Sbjct: 181 LPKQEM 186


>ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
          Length = 320

 Score =  370 bits (949), Expect = e-102
 Identities = 181/186 (97%), Positives = 181/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMN  PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180

Query: 604 LSKQEM 621
           L KQEM
Sbjct: 181 LPKQEM 186


>ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens].
          Length = 378

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 610 KQEM 621
           KQEM
Sbjct: 204 KQEM 207



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
           sapiens].
          Length = 353

 Score =  309 bits (791), Expect = 3e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 93  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
           sapiens].
          Length = 341

 Score =  309 bits (791), Expect = 3e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 81  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>ref|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens].
          Length = 305

 Score =  220 bits (560), Expect = 2e-57
 Identities = 106/178 (59%), Positives = 132/178 (74%)
 Frame = +1

Query: 88  EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 267
           E  QL KLFIGGL+ +T++  LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE 
Sbjct: 2   ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61

Query: 268 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 447
           DAAM A PH VDG  VE KRAVSREDS RPGAH  VKK+FVGG+K D  E  L ++F Q+
Sbjct: 62  DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121

Query: 448 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           G +E  EI+ D+ SGKKRGF FV F +HD+ DK  + K+H + GH  EV+KA+ K+++
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179



 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 32/91 (35%), Positives = 50/91 (54%)
 Frame = +1

Query: 73  SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 252
           S  P    +++KLF+GGL  +  +  L  HF Q+GT+    ++ D  + + RGFGFV + 
Sbjct: 88  SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147

Query: 253 TVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
             +  D A   + H + G  VE K+AV +ED
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178


>ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo
           sapiens].
          Length = 336

 Score =  165 bits (417), Expect = 6e-41
 Identities = 78/184 (42%), Positives = 121/184 (65%)
 Frame = +1

Query: 67  SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
           +K ++ K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
           +   E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 607 SKQE 618
           SK++
Sbjct: 240 SKEQ 243



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 354
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246


>ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo
           sapiens].
          Length = 287

 Score =  165 bits (417), Expect = 6e-41
 Identities = 78/184 (42%), Positives = 121/184 (65%)
 Frame = +1

Query: 67  SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
           +K ++ K  E   K+FIGGLS++TT + L+ +F ++G + DC +  DP T RSRGFGFV 
Sbjct: 66  AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125

Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
           +   E VD  M+ + HK++G+V++PKRA + +  +       VKKIFVGG+  DT E  +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179

Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
           R+YF  +G++E IE+  D  + K+RGF F+TF + + V KI+ +KYH V    CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239

Query: 607 SKQE 618
           SK++
Sbjct: 240 SKEQ 243



 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 31/95 (32%), Positives = 53/95 (55%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           ++++ K  E ++K+F+GGLS +T +E +R +F  +G +    +  D  T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 354
              E V   M  + H V     E K A+S+E  Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,256,746
Number of extensions: 588885
Number of successful extensions: 2427
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 2212
Number of HSP's successfully gapped: 198
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 i...   380   e-106
Alignment   gi|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isof...   380   e-106
Alignment   gi|NP_001159443.1| predicted gene 5803 [Mus musculus].               365   e-101
Alignment   gi|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleop...   336   1e-92
Alignment   gi|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprot...   336   2e-92
Alignment   gi|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleop...   336   2e-92
Alignment   gi|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isof...   336   2e-92
Alignment   gi|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isof...   336   2e-92
Alignment   gi|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isof...   336   2e-92
Alignment   gi|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleop...   335   2e-92

>ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus
           musculus].
          Length = 373

 Score =  380 bits (976), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus
           musculus].
          Length = 320

 Score =  380 bits (976), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|NP_001159443.1| predicted gene 5803 [Mus musculus].
          Length = 320

 Score =  365 bits (938), Expect = e-101
 Identities = 177/186 (95%), Positives = 182/186 (97%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSF+TTD+SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFQTTDKSLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDG+VVEPKRA+SR+DSQRPGAHL VKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGKVVEPKRAISRQDSQRPGAHLIVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKR FAFVTFDDHDSVD IVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDTIVIQKYHNVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Mus
           musculus].
          Length = 362

 Score =  336 bits (862), Expect = 1e-92
 Identities = 164/206 (79%), Positives = 179/206 (86%)
 Frame = +1

Query: 4   PFCPRTPPSKHRCNLLPTTVMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL 183
           P CP+    + R          +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTL
Sbjct: 7   PGCPQPDSGRRRRRR-----GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTL 61

Query: 184 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           TDCVVMRDP TKRSRGFGFVTY+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGA
Sbjct: 62  TDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGA 121

Query: 364 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 543
           HLTVKKIFVGGIKEDTEE++LRDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181

Query: 544 KIVIQKYHTVNGHNCEVRKALSKQEM 621
           KIV+QKYHT+NGHNCEV+KALSKQEM
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEM 207



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212


>ref|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
           16 [Mus musculus].
          Length = 350

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2   EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181

Query: 610 KQEM 621
           KQEM
Sbjct: 182 KQEM 185



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 85  PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190


>ref|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
           [Mus musculus].
          Length = 209

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2   EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181

Query: 610 KQEM 621
           KQEM
Sbjct: 182 KQEM 185



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 85  PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190


>ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus
           musculus].
          Length = 357

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2   EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181

Query: 610 KQEM 621
           KQEM
Sbjct: 182 KQEM 185



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 85  PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190


>ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
           musculus].
          Length = 379

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 610 KQEM 621
           KQEM
Sbjct: 204 KQEM 207



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
           musculus].
          Length = 379

 Score =  336 bits (861), Expect = 2e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 610 KQEM 621
           KQEM
Sbjct: 204 KQEM 207



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
           2 [Mus musculus].
          Length = 332

 Score =  335 bits (860), Expect = 2e-92
 Identities = 159/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2   EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHK+DGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62  SCVEEVDAAMCARPHKIDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181

Query: 610 KQEM 621
           KQEM
Sbjct: 182 KQEM 185



 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 85  PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,299,021
Number of extensions: 504574
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 204
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [...   380   e-106
Alignment   gi|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleop...   336   1e-92
Alignment   gi|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleop...   336   1e-92
Alignment   gi|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleop...   309   2e-84
Alignment   gi|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleop...   309   2e-84
Alignment   gi|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleop...   309   2e-84
Alignment   gi|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleop...   306   8e-84
Alignment   gi|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleop...   290   6e-79
Alignment   gi|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleop...   252   2e-67
Alignment   gi|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleop...   252   2e-67

>ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa].
          Length = 320

 Score =  380 bits (976), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)
 Frame = +1

Query: 64  MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
           MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1   MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60

Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
           TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61  TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120

Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
           LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180

Query: 604 LSKQEM 621
           LSKQEM
Sbjct: 181 LSKQEM 186


>ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
           2 [Sus scrofa].
          Length = 357

 Score =  336 bits (861), Expect = 1e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2   EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181

Query: 610 KQEM 621
           KQEM
Sbjct: 182 KQEM 185



 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 85  PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190


>ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
           1 [Sus scrofa].
          Length = 379

 Score =  336 bits (861), Expect = 1e-92
 Identities = 160/184 (86%), Positives = 173/184 (94%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203

Query: 610 KQEM 621
           KQEM
Sbjct: 204 KQEM 207



 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +S+ +S K    L  +K+F+GG+  +T + +LR +FE++G +    VM D  + + 
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
           RGF FVT+   + VD  +  + H ++G   E K+A+S+++ Q  G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
           scrofa].
          Length = 353

 Score =  309 bits (791), Expect = 2e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193



 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 93  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>ref|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
           isoform 2 [Sus scrofa].
          Length = 353

 Score =  309 bits (791), Expect = 2e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15  REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193



 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 93  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194


>ref|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
           isoform 1 [Sus scrofa].
          Length = 341

 Score =  309 bits (791), Expect = 2e-84
 Identities = 144/179 (80%), Positives = 166/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63  VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181



 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 81  PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGFVT+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182


>ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
           scrofa].
          Length = 447

 Score =  306 bits (785), Expect = 8e-84
 Identities = 142/179 (79%), Positives = 165/179 (92%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 109 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 168

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 169 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 228

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YGK++ IEI+TDR SGKKRGF F TFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 229 YGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 287



 Score = 64.7 bits (156), Expect = 7e-11
 Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +1

Query: 52  PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
           P   +++ ES K    +  +KLF+GG+  +T +  LR +FE++G +    ++ D  + + 
Sbjct: 187 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKK 246

Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
           RGFGF T+   + VD  +  + H ++G   E ++A+SR++ Q
Sbjct: 247 RGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 288


>ref|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Sus
           scrofa].
          Length = 290

 Score =  290 bits (743), Expect = 6e-79
 Identities = 141/165 (85%), Positives = 151/165 (91%)
 Frame = +1

Query: 70  KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
           +   PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24  EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83

Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
           + VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84  SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143

Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 564
           DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV   Y
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVGGNY 188



 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/111 (29%), Positives = 61/111 (54%)
 Frame = +1

Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
           RP    GR    +R    E+   P     ++K+F+GG+  +T +  LR++FE++G +   
Sbjct: 9   RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64

Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
            +M D  + + RGF FVT+   + VD  +  + H V+G   E ++A+S+++
Sbjct: 65  VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115


>ref|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
           scrofa].
          Length = 354

 Score =  252 bits (643), Expect = 2e-67
 Identities = 120/179 (67%), Positives = 148/179 (82%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGL  ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15  RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVV  KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YG I+ IEI+  R SG+K  F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191



 Score = 58.2 bits (139), Expect = 7e-09
 Identities = 28/83 (33%), Positives = 51/83 (61%)
 Frame = +1

Query: 103 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 282
           +KLF+GG+  +TT+  LR +FE++GT+    ++R    K +  FGFVT+   + VD  + 
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169

Query: 283 ARPHKVDGRVVEPKRAVSREDSQ 351
            + H ++G   + ++A+SR+  Q
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQ 192


>ref|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
           scrofa].
          Length = 354

 Score =  252 bits (643), Expect = 2e-67
 Identities = 120/179 (67%), Positives = 148/179 (82%)
 Frame = +1

Query: 85  KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
           +E EQ RKLFIGGL  ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15  RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74

Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
           VDAAM ARPH +DGRVV  KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75  VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134

Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
           YG I+ IEI+  R SG+K  F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191



 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
 Frame = +1

Query: 103 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 282
           +KLF+GG+  +TT+  LR +FE++GT+    ++R    K +  FGFVT+   + VD  + 
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169

Query: 283 ARPHKVDGRVVEPKRAVSREDSQ-------RPGAHLTVKKIFVGG 396
            + H ++G   + ++A+SR+  Q       R G H+    I  GG
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGDIPSGG 214


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,376,611
Number of extensions: 712536
Number of successful extensions: 1400
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 106
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001987
         (951 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         952   0.0  
Sscrofa_Chr01                                                         894   0.0  
Sscrofa_Chr06                                                         454   e-125
gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754      440   e-121
Sscrofa_Chr14                                                         440   e-121
Sscrofa_Chr05                                                         418   e-114
Sscrofa_Chr15                                                         412   e-112
Sscrofa_Chr08                                                         188   4e-45
Sscrofa_Chr16                                                         151   8e-34
Sscrofa_Chr18                                                         117   1e-23

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  952 bits (480), Expect = 0.0
 Identities = 619/663 (93%), Gaps = 3/663 (0%)
 Strand = Plus / Plus

                                                                             
Query: 6         tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 65
                 |||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192087823 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192087882

                                                                             
Query: 66        gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 125
                 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192087883 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192087942

                                                                             
Query: 126       gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 185
                 ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| 
Sbjct: 192087943 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192088001

                                                                             
Query: 186       agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 245
                  ||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192088002 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192088060

                                                                             
Query: 246       gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 305
                 |||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192088061 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192088119

                                                                             
Query: 306       aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 365
                 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192088120 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192088179

                                                                             
Query: 366       cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 425
                 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192088180 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192088239

                                                                             
Query: 426       aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 485
                 |||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192088240 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192088299

                                                                             
Query: 486       cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 545
                 |||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192088300 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192088359

                                                                             
Query: 546       gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 605
                 || |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192088360 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192088419

                                                                             
Query: 606       atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 665
                 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192088420 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192088479

                    
Query: 666       ctt 668
                 |||
Sbjct: 192088480 ctt 192088482



 Score =  952 bits (480), Expect = 0.0
 Identities = 619/663 (93%), Gaps = 3/663 (0%)
 Strand = Plus / Plus

                                                                             
Query: 6         tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 65
                 |||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192326803 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192326862

                                                                             
Query: 66        gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 125
                 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192326863 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192326922

                                                                             
Query: 126       gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 185
                 ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| 
Sbjct: 192326923 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192326981

                                                                             
Query: 186       agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 245
                  ||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192326982 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192327040

                                                                             
Query: 246       gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 305
                 |||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192327041 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192327099

                                                                             
Query: 306       aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 365
                 ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192327100 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192327159

                                                                             
Query: 366       cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 425
                 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192327160 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192327219

                                                                             
Query: 426       aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 485
                 |||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192327220 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192327279

                                                                             
Query: 486       cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 545
                 |||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192327280 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192327339

                                                                             
Query: 546       gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 605
                 || |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192327340 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192327399

                                                                             
Query: 606       atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 665
                 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192327400 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192327459

                    
Query: 666       ctt 668
                 |||
Sbjct: 192327460 ctt 192327462



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 92/109 (84%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                             
Query: 487       agtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaag 546
                 ||||| ||||||||||| |||| |||||||| ||||||||| |||||  | || || || 
Sbjct: 155821422 agtgggaaaaagagagggtttg-ttttgtaatttttgatgatcatgatacagttgataaa 155821364

                                                                  
Query: 547       attgtcattcagaaataccacactgtgaatggccacaactgtgaagtga 595
                 | ||| |||||||||||||||||| | ||||| ||||| ||||||||||
Sbjct: 155821363 actgttattcagaaataccacactataaatgggcacaattgtgaagtga 155821315


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  894 bits (451), Expect = 0.0
 Identities = 616/671 (91%), Gaps = 10/671 (1%)
 Strand = Plus / Minus

                                                                             
Query: 2         ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 61
                 ||||||||||| ||||||||||||| |||||||||||||  |  ||||||||||||||| 
Sbjct: 276569465 ctcctttctgctcccggacgccgccaagtaagcatcgttacattctcctccccactacca 276569406

                                                                             
Query: 62        tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
                 |||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 276569405 tcatgtctaaatcagagtctcccaaagagcccgaacagttgcggaaggtcttcctcggag 276569346

                                                                             
Query: 122       gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
                 |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 276569345 gtttgagctttgaaacaaccgatgagagactgaggagccattctgagcaatggggaacgc 276569286

                                                                             
Query: 182       tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
                 |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 276569285 tcacagactgtgtggtaaggagggacccaaacaccaagcgctccagaggcttcaggtttg 276569226

                                                                             
Query: 242       tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
                 |||||||  |||||||||||||||||||  ||||||||||| ||||||| ||||||||||
Sbjct: 276569225 tcacgtacaccactgtggaggaggtggacacagccatgaatacaaggccacacaaggtgg 276569166

                                                                             
Query: 302       atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
                 ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 276569165 atggaagagttgtggaaccaaggagggctgtctcaagagaagattctcaaagacctggtg 276569106

                                                                             
Query: 362       cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276569105 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 276569046

                                                                             
Query: 422       acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
                 | |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||| 
Sbjct: 276569045 atctaagagagtattttgaacagtatgggaaaattgaagtgattggaatcatgactgacc 276568986

                                                                             
Query: 482       ggggcagtggca----aaaagagaggttttgcttttgtaacttttgatgaccatgactcc 537
                   ||||||||||    |||| |||||||||||||||||||| ||  || |||||||||| 
Sbjct: 276568985 aaggcagtggcaaaaaaaaaaagaggttttgcttttgtaaccttcaataaccatgactct 276568926

                                                                             
Query: 538       gtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgagg 597
                 ||      || |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 276568925 gt------gactgtcatccagaaataccacactgtgaatggccacaactatgaagtgagg 276568872

                                                                             
Query: 598       aaagccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggt 657
                 ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 276568871 aaagctctatccaagaaagagatgtctaatgcttcatccagccaaagaggtcgaagtggt 276568812

                            
Query: 658       tctggaaactt 668
                 |||||||||||
Sbjct: 276568811 tctggaaactt 276568801



 Score =  846 bits (427), Expect = 0.0
 Identities = 600/656 (91%), Gaps = 5/656 (0%)
 Strand = Plus / Plus

                                                                             
Query: 13        ccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcatgtctaag 72
                 |||| ||||| ||| ||||||||||| | || |||||||||  |||| ||| |||| |||
Sbjct: 293612865 cccccgacgctgccaagtaagcatcgatatatcctcctcccacctactgtcgtgtcgaag 293612924

                                                                             
Query: 73        tcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagcttt 132
                 |||||||||||||| ||||| ||||      ||||||| |||||||||||||||||||||
Sbjct: 293612925 tcagagtctcccaaggagcctgaactt----ggaagcttttcatcggaggtttgagcttt 293612980

                                                                             
Query: 133       gaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgt 192
                 ||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||  |
Sbjct: 293612981 gaaacaaccgatgagggactgaggagccattctgagccatggggaacgctcacagaccat 293613040

                                                                             
Query: 193       gtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgcc 252
                 | ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613041 gcggtgatgaggggcccaaacaccaagcgctccagaggcttcgggtttgtcacgtatgcc 293613100

                                                                             
Query: 253       actgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagtt 312
                 ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613101 actgtgggggaggtggatgcagccatgaatgcaaggccacacaaggtggatggaagagtt 293613160

                                                                             
Query: 313       gtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaact 372
                 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct: 293613161 gtggaaccaaagagggc-gtctccagagaagattctcaacgacctggtgcccactgaact 293613219

                                                                             
Query: 373       gtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagat 432
                 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293613220 gtgaaaaagatttttgtcggtggcattaaagaagacactgaagaacatcacctaagaggt 293613279

                                                                             
Query: 433       tattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggc 492
                  ||||||||| || |||||||| | ||||||||||||||||||| ||| | ||||| |||
Sbjct: 293613280 gattttgaaccgtgtgggaaaaccaaagtgattgaaatcatgactgactgaggcaggggc 293613339

                                                                             
Query: 493       aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtc 552
                 ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 293613340 aaaaagagaggttttgcttttctaacctttgatgaccatgactctgtagacaagattgtc 293613399

                                                                             
Query: 553       attcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaag 612
                 |||||||||||||||   ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 293613400 attcagaaataccacgtggtgaagggccacaactgtgaagtaaggaaagccctatccaag 293613459

                                                                         
Query: 613       caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
                 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 293613460 caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctagaaactt 293613515



 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                          
Query: 493       aaaaagagaggttttgcttttgtaacttttgatgaccatga 533
                 ||||||||||  ||||||||||||||||||||||| |||||
Sbjct: 266958749 aaaaagagagcatttgcttttgtaacttttgatgagcatga 266958789


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  454 bits (229), Expect = e-125
 Identities = 414/471 (87%), Gaps = 6/471 (1%)
 Strand = Plus / Minus

                                                                            
Query: 200      tgagggacccaaacaccaagcgctccagagg-tttcgggtttgtcacgtatgccactgtg 258
                ||||||||||| | |||||||  |||||||| |||  | |||||||||||||||||||||
Sbjct: 39293791 tgagggacccagataccaagccttccagaggctttaagttttgtcacgtatgccactgtg 39293732

                                                                            
Query: 259      gaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaa 318
                ||| |||||||||  ||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 39293731 gagaaggtggatggggccatgaatgcaaggccacacaagggggatgaaagagttgtggaa 39293672

                                                                            
Query: 319      ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 378
                ||||||  ||| ||||||||||||||||||||  ||||||||||  ||||| ||| ||| 
Sbjct: 39293671 ccaaagcaggctgtctcaagagaagattctcagggacctggtgcttacttagctgagaa- 39293613

                                                                            
Query: 379      aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 438
                  ||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct: 39293612 --gatttttgttggtcgcattgaagaagacactgaaga-catcatctaagagattatttt 39293556

                                                                            
Query: 439      gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaa- 497
                |||| |||||||||||  ||||||| |||||||||||| ||| | ||||||  |||||| 
Sbjct: 39293555 gaacggtatgggaaaactgaagtgactgaaatcatgactgactgaggcagtatcaaaaaa 39293496

                                                                            
Query: 498      gagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattca 557
                |||||| |||||||| ||||| |||||||| |||||||| |||||| |||||||| ||| 
Sbjct: 39293495 gagaggctttgctttggtaacctttgatgaacatgactctgtagacgagattgtccttcg 39293436

                                                                            
Query: 558      gaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagcaaga 617
                |||||||| |||||| ||||| |||||||||||||| || |||||| ||| |||||||||
Sbjct: 39293435 gaaatacctcactgtcaatggtcacaactgtgaagtaagtaaagccttattcaagcaaga 39293376

                                                                   
Query: 618      gatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
                |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 39293375 gatggctagtgcttcatccagccaaagaggtctaagtgcttctggaaactt 39293325


>gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754
          Length = 197135

 Score =  440 bits (222), Expect = e-121
 Identities = 510/608 (83%), Gaps = 41/608 (6%)
 Strand = Plus / Minus

                                                                          
Query: 62     tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
              ||||| ||||||||||||| |||||||| || ||| |||||  |||||||||||| ||||
Sbjct: 150407 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 150348

                                                                          
Query: 122    gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
              |||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 150347 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 150288

                                                                          
Query: 182    tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
              ||||||||||    ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 150287 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 150232

                                                                          
Query: 242    tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
              |||| | ||||| |||||||| ||   ||||||||||||||||||| || |||||||| |
Sbjct: 150231 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 150175

                                                                          
Query: 302    atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
              |               ||||| ||||||| |||||||||||||||||||||||||   ||
Sbjct: 150174 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 150132

                                                                          
Query: 362    cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
              || |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 150131 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 150072

                                                                          
Query: 422    acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
              |||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||  
Sbjct: 150071 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 150012

                                                                          
Query: 482    ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
              | |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 150011 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 149952

                                                                          
Query: 541    gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
              ||||||||| || ||||||||||||||                |||||||| | || |||
Sbjct: 149951 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 149908

                                                                          
Query: 601    gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
               ||||||||||||||||||||  ||||||||||| || ||||||||||| ||||||||||
Sbjct: 149907 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 149848

                      
Query: 661    ggaaactt 668
              ||||||||
Sbjct: 149847 ggaaactt 149840


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  440 bits (222), Expect = e-121
 Identities = 510/608 (83%), Gaps = 41/608 (6%)
 Strand = Plus / Minus

                                                                             
Query: 62        tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
                 ||||| ||||||||||||| |||||||| || ||| |||||  |||||||||||| ||||
Sbjct: 112311155 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112311096

                                                                             
Query: 122       gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
                 |||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112311095 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112311036

                                                                             
Query: 182       tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
                 ||||||||||    ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112311035 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112310980

                                                                             
Query: 242       tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
                 |||| | ||||| |||||||| ||   ||||||||||||||||||| || |||||||| |
Sbjct: 112310979 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112310923

                                                                             
Query: 302       atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
                 |               ||||| ||||||| |||||||||||||||||||||||||   ||
Sbjct: 112310922 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112310880

                                                                             
Query: 362       cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
                 || |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112310879 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112310820

                                                                             
Query: 422       acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
                 |||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||  
Sbjct: 112310819 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112310760

                                                                             
Query: 482       ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
                 | |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112310759 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112310700

                                                                             
Query: 541       gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
                 ||||||||| || ||||||||||||||                |||||||| | || |||
Sbjct: 112310699 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112310656

                                                                             
Query: 601       gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
                  ||||||||||||||||||||  ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112310655 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112310596

                         
Query: 661       ggaaactt 668
                 ||||||||
Sbjct: 112310595 ggaaactt 112310588



 Score =  440 bits (222), Expect = e-121
 Identities = 510/608 (83%), Gaps = 41/608 (6%)
 Strand = Plus / Plus

                                                                             
Query: 62        tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
                 ||||| ||||||||||||| |||||||| || ||| |||||  |||||||||||| ||||
Sbjct: 112511905 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112511964

                                                                             
Query: 122       gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
                 |||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112511965 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112512024

                                                                             
Query: 182       tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
                 ||||||||||    ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112512025 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112512080

                                                                             
Query: 242       tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
                 |||| | ||||| |||||||| ||   ||||||||||||||||||| || |||||||| |
Sbjct: 112512081 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112512137

                                                                             
Query: 302       atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
                 |               ||||| ||||||| |||||||||||||||||||||||||   ||
Sbjct: 112512138 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112512180

                                                                             
Query: 362       cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
                 || |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112512181 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112512240

                                                                             
Query: 422       acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
                 |||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||  
Sbjct: 112512241 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112512300

                                                                             
Query: 482       ggggcagtggc-aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
                 | ||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112512301 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112512360

                                                                             
Query: 541       gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
                 ||||||||| || ||||||||||||||                |||||||| | || |||
Sbjct: 112512361 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112512404

                                                                             
Query: 601       gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
                  ||||||||||||||||||||  ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112512405 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112512464

                         
Query: 661       ggaaactt 668
                 ||||||||
Sbjct: 112512465 ggaaactt 112512472



 Score =  159 bits (80), Expect = 3e-36
 Identities = 173/204 (84%)
 Strand = Plus / Plus

                                                                            
Query: 270      tgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaagagggc 329
                |||||||  |||||||||||| ||  || |||||||||||||||| |||||||||| |||
Sbjct: 51614704 tgcagccgggaatgcaaggccacatcagatggatggaagagttgtagaaccaaagaaggc 51614763

                                                                            
Query: 330      cgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagatttttgt 389
                 ||||| |||| ||| | |||| |||  |||||||| || |||||||||||||||| || 
Sbjct: 51614764 tgtctccagaggagactttcaaggactgggtgcccatttcactgtgaaaaagatttctgg 51614823

                                                                            
Query: 390      tggtggcattaaagaagacactgaagaacatcacctaagagattattttgaacagtatgg 449
                ||||||||||||||| ||||  || |||||||||| | |||||||||||| ||||| |||
Sbjct: 51614824 tggtggcattaaagatgacatcgaggaacatcacccatgagattattttggacagtgtgg 51614883

                                        
Query: 450      gaaaatcgaagtgattgaaatcat 473
                || || |||||||| |||||||||
Sbjct: 51614884 gagaaccgaagtgactgaaatcat 51614907


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  418 bits (211), Expect = e-114
 Identities = 211/211 (100%)
 Strand = Plus / Plus

                                                                            
Query: 343      gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 402
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330904 gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 20330963

                                                                            
Query: 403      gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 462
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330964 gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 20331023

                                                                            
Query: 463      attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 522
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331024 attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 20331083

                                               
Query: 523      gatgaccatgactccgtagacaagattgtca 553
                |||||||||||||||||||||||||||||||
Sbjct: 20331084 gatgaccatgactccgtagacaagattgtca 20331114



 Score =  295 bits (149), Expect = 2e-77
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                            
Query: 195      ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 254
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330626 ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 20330685

                                                                            
Query: 255      tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 314
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330686 tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 20330745

                                             
Query: 315      ggaaccaaagagggccgtctcaagagaag 343
                |||||||||||||||||||||||||||||
Sbjct: 20330746 ggaaccaaagagggccgtctcaagagaag 20330774



 Score =  244 bits (123), Expect = 7e-62
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                            
Query: 77       agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330215 agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 20330274

                                                                            
Query: 137      caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330275 caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 20330334

                   
Query: 197      taa 199
                |||
Sbjct: 20330335 taa 20330337



 Score =  226 bits (114), Expect = 2e-56
 Identities = 117/118 (99%)
 Strand = Plus / Plus

                                                                            
Query: 834      ccctggttactctggaggaagcagaggctatggaagtggtggacagggttatggaaacca 893
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331954 ccctggttactctggaggaagcagaggctatggaagtggtggacagggttatggaaacca 20332013

                                                                          
Query: 894      gggcagtggctatggcgggagtggcagctatgacagctataacaacggaggaagcgga 951
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 20332014 gggcagtggctatggcgggagtggcagctatgacagctataacaacggaggaggcgga 20332071



 Score =  188 bits (95), Expect = 4e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                            
Query: 554      ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 613
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331206 ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 20331265

                                                   
Query: 614      aagagatggctagtgcttcatccagccaaagaggt 648
                |||||||||||||||||||||||||||||||||||
Sbjct: 20331266 aagagatggctagtgcttcatccagccaaagaggt 20331300



 Score =  153 bits (77), Expect = 2e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2        ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20329595 ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 20329654

                                 
Query: 62       tcatgtctaagtcagag 78
                |||||||||||||||||
Sbjct: 20329655 tcatgtctaagtcagag 20329671


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  412 bits (208), Expect = e-112
 Identities = 374/426 (87%), Gaps = 5/426 (1%)
 Strand = Plus / Minus

                                                                            
Query: 146      agagtctgaggagccattttgagcaatggggaacgctcacagactgtgtggtaatgaggg 205
                |||||||||||||||||| |||| |||||| |||  ||||||||||||||||||||||||
Sbjct: 88607440 agagtctgaggagccattctgagaaatgggcaacaatcacagactgtgtggtaatgaggg 88607381

                                                                            
Query: 206      acccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccact--gtggagga 263
                |  |   | |||||  ||||||||| ||||||||||| | | ||||  |   | ||||||
Sbjct: 88607380 aggct--cgccaagtcctccagaggcttcgggtttgttatgaatgctccgtggaggagga 88607323

                                                                            
Query: 264      ggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaa 323
                |||||||||||||||||||||  |||| ||||| ||||||||||||| ||||| | ||||
Sbjct: 88607322 ggtggatgcagccatgaatgcggggccacacaaagtggatggaagagctgtgggatcaaa 88607263

                                                                            
Query: 324      gagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagat 383
                |||| | |||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 88607262 gaggcctgtctcaagagcagattctcaaagacctggtgctcccttaactgtgaaaaagat 88607203

                                                                            
Query: 384      ttttgttggtggcattaaagaagacactgaagaacatcacctaagagattattttgaaca 443
                ||||||||||||| ||||   ||||||||||||||||| ||| || ||||||||||||||
Sbjct: 88607202 ttttgttggtggccttaagcgagacactgaagaacatcccctgagggattattttgaaca 88607143

                                                                            
Query: 444      gtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaagagagg 503
                |||||||||||| ||||| | |||||||||||| ||| | ||||||||||||||||||||
Sbjct: 88607142 gtatgggaaaattgaagt-actgaaatcatgactgactgaggcagtggcaaaaagagagg 88607084

                                                                            
Query: 504      ttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattcagaaata 563
                 |||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 88607083 ctttgcttttgtaacctctgatgaccatgactcggtagacaagattgtcattcagaaata 88607024

                      
Query: 564      ccacac 569
                ||||||
Sbjct: 88607023 ccacac 88607018



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 144/179 (80%)
 Strand = Plus / Plus

                                                                            
Query: 355      cctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaa 414
                |||||||||||  |||| ||||| || |||||||||||||| |||||||||||||| || 
Sbjct: 92420504 cctggtgcccatctaacagtgaagaaaatttttgttggtggtattaaagaagacacagag 92420563

                                                                            
Query: 415      gaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatg 474
                ||| |  |  | ||||| || |||||| ||||||| ||||| |||   || ||| | |||
Sbjct: 92420564 gaatacaatttgagagactactttgaaaagtatggcaaaattgaaaccatagaagttatg 92420623

                                                                           
Query: 475      acggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatga 533
                   ||||||   ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 92420624 gaagacaggcagagtgggaaaaagagaggatttgcttttgtaactttcgatgatcatga 92420682



 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 74/86 (86%)
 Strand = Plus / Plus

                                                                            
Query: 368      taactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaa 427
                |||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||| || || |
Sbjct: 59811159 taactgtgaagaagctatttgttggtggaattaaagaagatactgaggaacaccatctta 59811218

                                          
Query: 428      gagattattttgaacagtatgggaaa 453
                ||||||| |||||  |||||||||||
Sbjct: 59811219 gagattactttgaggagtatgggaaa 59811244


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  188 bits (95), Expect = 4e-45
 Identities = 217/255 (85%), Gaps = 2/255 (0%)
 Strand = Plus / Plus

                                                                            
Query: 412      gaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatc 471
                |||| ||||||||| |||||| | ||  |||||| ||||||||  |||||||||||||||
Sbjct: 34648560 gaaggacatcacctgagagatgacttccaacagtgtgggaaaagtgaagtgattgaaatc 34648619

                                                                            
Query: 472      atgacggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccat 531
                ||||| |||   |||||||  ||||||||||| |||||||||||||| | ||||||||||
Sbjct: 34648620 atgactgacccaggcagtgagaaaaagagaggctttgcttttgtaacctctgatgaccat 34648679

                                                                            
Query: 532      gactccgtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaa 591
                ||||| | || ||||| |||| |||||||||| |||| ||  |||||||||||| |||| 
Sbjct: 34648680 gactctgcaggcaagactgtccttcagaaatatcaca-tgcaaatggccacaacggtgat 34648738

                                                                            
Query: 592      gtgaggaaagccctatccaag-caagagatggctagtgcttcatccagccaaagaggtcg 650
                || ||||| |||| ||||||| ||||||||||||||||||||| |  |||||| ||||| 
Sbjct: 34648739 gtaaggaaggccccatccaagccaagagatggctagtgcttcacctggccaaaaaggtca 34648798

                               
Query: 651      aagtggttctggaaa 665
                |||||||||||||||
Sbjct: 34648799 aagtggttctggaaa 34648813



 Score =  178 bits (90), Expect = 4e-42
 Identities = 335/412 (81%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                            
Query: 4        cctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtc 63
                ||||||||||  || ||||| || ||||||| || || |  |||| |||||||| |||||
Sbjct: 34647864 cctttctgcctgcgaacgccacccagtaagcctcattatggcctcttccccactgccgtc 34647923

                                                                            
Query: 64       atgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggt 123
                |  || ||||| ||||||||||||||||| ||| |||||| ||||| ||||||  || ||
Sbjct: 34647924 acatccaagtccgagtctcccaaagagccagaatagctgcagaagcgcttcattagatgt 34647983

                                                                            
Query: 124      ttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctc 183
                 |||| ||| ||||||| ||| ||||||||| |||||||| |||||||||||||| ||||
Sbjct: 34647984 gtgagttttcaaacaactgataagagtctgaagagccattgtgagcaatggggaaggctc 34648043

                                                                            
Query: 184      acagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtc 243
                |||| | |||| |  | |||| |||||||||||||| |||||||  | |  |||||||||
Sbjct: 34648044 acaggcagtgtagcgacgaggaacccaaacaccaagtgctccagcagctctgggtttgtc 34648103

                                                                            
Query: 244      acgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggat 303
                ||||||| | |||||||||| | || |||||||||||||||||||||   ||| ||||| 
Sbjct: 34648104 acgtatgaccctgtggagga-gagggtgcagccatgaatgcaaggccaggcaaagtggac 34648162

                                                                            
Query: 304      ggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgcc 363
                   || |||||| ||||  |||    | ||||  ||||||||||||||||| | ||||||
Sbjct: 34648163 atcagtgttgtgaaacc--agaaaatcatctc--gagaagattctcaaagaaccggtgcc 34648218

                                                                    
Query: 364      cacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaag 415
                |||||  ||||||||||||    ||| |||||||||||||||||||||||||
Sbjct: 34648219 cactttgctgtgaaaaaga-agctgtcggtggcattaaagaagacactgaag 34648269


>Sscrofa_Chr16 
||          Length = 86898991

 Score =  151 bits (76), Expect = 8e-34
 Identities = 151/175 (86%), Gaps = 2/175 (1%)
 Strand = Plus / Plus

                                                                            
Query: 319      ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 378
                ||||||||||  || ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 68793851 ccaaagagggatgtgtcaagagaagattctcaaagaccaggtgcccaattaacagtgaaa 68793910

                                                                            
Query: 379      aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 438
                | || ||||||||| |||||   ||||||||||||||| ||| ||| ||||| |||||| 
Sbjct: 68793911 aggacttttgttggcggcat--cagaagacactgaagagcattacccaagaggttatttc 68793968

                                                                       
Query: 439      gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggca 493
                || |||| || ||||||||||||||||||||||||||| |||   ||||||||||
Sbjct: 68793969 gagcagtgtgcgaaaatcgaagtgattgaaatcatgactgaccaaggcagtggca 68794023



 Score =  121 bits (61), Expect = 7e-25
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                            
Query: 263      aggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaa 322
                ||||| ||||||||||| ||| |||||| | |||||||||||||||||||| | ||||||
Sbjct: 32505349 aggtgaatgcagccatgcatgtaaggccacccaaggtggatggaagagttgggaaaccaa 32505290

                                                                            
Query: 323      agagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaaga 382
                || |  | || |||||||| ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 32505289 agggcactgtttcaagagaggattctcaaagacttggggcccacttaactgtganaaaga 32505230

                    
Query: 383      tttt 386
                ||||
Sbjct: 32505229 tttt 32505226



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 428      gagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggca 487
                |||||||||||||||||||||||||||| ||||||||||| ||||  || ||| | ||||
Sbjct: 32503771 gagattattttgaacagtatgggaaaattgaagtgattgatatcacaactgacggaggca 32503712

                       
Query: 488      gtggcaa 494
                |||||||
Sbjct: 32503711 gtggcaa 32503705



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 610      aagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
                |||||| | ||||||||||||||||||||||||||| | |  |||||||||| ||||||
Sbjct: 32503599 aagcaaaaaatggctagtgcttcatccagccaaagaagccctagtggttctgcaaactt 32503541


>Sscrofa_Chr18 
||          Length = 61220071

 Score =  117 bits (59), Expect = 1e-23
 Identities = 216/267 (80%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                            
Query: 296      aggtggatggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagac 355
                ||||| |||||||||||||| ||||||||| | | ||||||||||||  |  ||||||||
Sbjct: 30783288 aggtgtatggaagagttgtg-aaccaaagaagcctgtctcaagagaaagtgttcaaagac 30783230

                                                                            
Query: 356      ctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaag 415
                | |||||||| ||| || |||||||||   ||||  || ||| | |||||| ||||||||
Sbjct: 30783229 caggtgcccagttacctatgaaaaagacccttgtcagtagcagtgaagaaggcactgaag 30783170

                                                                            
Query: 416      aacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatga 475
                |||||||  |||||||||||| ||| ||||||  ||| |  ||| ||||||||||||| |
Sbjct: 30783169 aacatcatgtaagagattattctgagcagtataagaagaatgaaatgattgaaatcatta 30783110

                                                                            
Query: 476      cggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgact 535
                | |||  |||||||| | | |||||||  |||||||||||||| |||| |||||   |||
Sbjct: 30783109 ctgactagggcagtgacgagaagagagcctttgcttttgtaacctttggtgacctcaact 30783050

                                           
Query: 536      ccgtagacaagattgtcattcagaaat 562
                || |  | |||| ||||||||||||||
Sbjct: 30783049 ccattaataagactgtcattcagaaat 30783023



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 368      taactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaa 427
                |||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||| || || |
Sbjct: 50984312 taactgtgaagaagctatttgttggtggaattaaagaagatactgaggaacaccatctta 50984371

                                            
Query: 428      gagattattttgaacagtatgggaaaat 455
                ||||||| |||||  |||||||||||||
Sbjct: 50984372 gagattactttgaggagtatgggaaaat 50984399


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,854,859
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 48
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)