Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [... 380 e-106
Alignment gi|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleop... 367 e-102
Alignment gi|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleop... 367 e-102
Alignment gi|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleop... 365 e-101
Alignment gi|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleop... 365 e-101
Alignment gi|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus]. 336 2e-92
Alignment gi|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [... 336 2e-92
Alignment gi|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/... 309 3e-84
Alignment gi|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleop... 274 7e-74
Alignment gi|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprot... 274 7e-74
>ref|NP_001039376.1| heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
Length = 320
Score = 380 bits (976), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
taurus].
Length = 320
Score = 367 bits (942), Expect = e-102
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform 2
[Bos taurus].
Length = 320
Score = 367 bits (942), Expect = e-102
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQL KLFIGGL FET DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLWKLFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY TVEEVDAAMNARPHKVDGR VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTD+GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC+VRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCQVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_002707753.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like [Bos
taurus].
Length = 320
Score = 365 bits (937), Expect = e-101
Identities = 179/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETT+ESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTNESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVS EDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSGEDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
RDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 XRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_001253175.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1 [Bos taurus].
Length = 320
Score = 365 bits (937), Expect = e-101
Identities = 180/186 (96%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV+MRDPNTK SRGFG V
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVLMRDPNTKHSRGFGLV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRV E KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVGELKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYRKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_002685345.1| PREDICTED: mCG1035404-like [Bos taurus].
Length = 380
Score = 336 bits (862), Expect = 2e-92
Identities = 160/185 (86%), Positives = 174/185 (94%)
Frame = +1
Query: 67 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
++ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVT
Sbjct: 23 AEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82
Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
Y+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++L
Sbjct: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 142
Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
RDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KAL
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 202
Query: 607 SKQEM 621
SKQEM
Sbjct: 203 SKQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
>ref|NP_001192358.1| heterogeneous nuclear ribonucleoprotein A3 [Bos taurus].
Length = 380
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 610 KQEM 621
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus].
Length = 341
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|XP_002688943.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus].
Length = 341
Score = 274 bits (701), Expect = 7e-74
Identities = 129/179 (72%), Positives = 157/179 (87%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD ++RSRG GFVT+++V E
Sbjct: 15 KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75 VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193
Score = 63.2 bits (152), Expect = 3e-10
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +1
Query: 100 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 279
L+KLF+GG+ +T + LR +FE++G + ++ D + R RGFGFVT+ + VD +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170
Query: 280 NARPHKVDGRVVEPKRAVSREDSQR 354
+ H ++G E ++A+S + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195
>ref|XP_590414.4| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1 [Bos
taurus].
Length = 341
Score = 274 bits (701), Expect = 7e-74
Identities = 129/179 (72%), Positives = 157/179 (87%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
KE EQ+RKLFIGGLSF+TT+ESLR +++QWG LTDCVV+RD ++RSRG GFVT+++V E
Sbjct: 15 KEAEQIRKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRV+EP+RA+ RE S + GAH T+KK+FVGGIKEDTEEHHLR+YFE+
Sbjct: 75 VDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEK 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SG+KRGF FVTFDD+D VDKIV+QKYH +NGH+ EVRKALS EM
Sbjct: 135 YGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKALSIWEM 193
Score = 63.2 bits (152), Expect = 3e-10
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = +1
Query: 100 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 279
L+KLF+GG+ +T + LR +FE++G + ++ D + R RGFGFVT+ + VD +
Sbjct: 111 LKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIV 170
Query: 280 NARPHKVDGRVVEPKRAVSREDSQR 354
+ H ++G E ++A+S + Q+
Sbjct: 171 LQKYHAINGHHAEVRKALSIWEMQQ 195
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,334,834
Number of extensions: 737867
Number of successful extensions: 2173
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 121
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear rib... 380 e-105
Alignment gi|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear rib... 346 2e-95
Alignment gi|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
Alignment gi|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
Alignment gi|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear rib... 345 4e-95
>ref|XP_534786.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 1 [Canis
familiaris].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_856107.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 5 [Canis
familiaris].
Length = 306
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_856065.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 4 [Canis
familiaris].
Length = 330
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_848386.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 2 [Canis
familiaris].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_863068.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 4 [Canis
familiaris].
Length = 310
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>ref|XP_863042.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 3 [Canis
familiaris].
Length = 268
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>ref|XP_851069.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP-1)
(Topoisomerase-inhibitor suppressed) isoform 2 [Canis
familiaris].
Length = 318
Score = 346 bits (888), Expect = 2e-95
Identities = 171/186 (91%), Positives = 175/186 (94%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPK PEQL+KLFIGG SFETTDESLRSHF+Q G LTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKGPEQLQKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY VEEVD AM+ARPHKVDGRVVEPKR S+EDSQRPGAHLTVKKIF GGIKEDTEEHH
Sbjct: 61 TYTAVEEVDPAMHARPHKVDGRVVEPKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN EVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P SK +S + L +K+F GG+ +T + LR +FEQ+G + +M D + +
Sbjct: 86 PKRTSSKEDSQRPGAHLTVKKIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 146 RGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKALSKQE 185
>ref|XP_864798.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 5 [Canis
familiaris].
Length = 274
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 601 ALSKQEM 621
AL KQEM
Sbjct: 181 ALWKQEM 187
>ref|XP_864777.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 4 [Canis
familiaris].
Length = 276
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 601 ALSKQEM 621
AL KQEM
Sbjct: 181 ALWKQEM 187
>ref|XP_864760.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) isoform 3 [Canis
familiaris].
Length = 276
Score = 345 bits (885), Expect = 4e-95
Identities = 173/187 (92%), Positives = 175/187 (93%), Gaps = 1/187 (0%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH EQWG L DCVVMRDPNTKRSRGFGF
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQWGALMDCVVMRDPNTKRSRGFGFA 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TY T EEVDA MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYTTREEVDAVMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDY-FEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 600
L+DY FEQY KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH VNGH+ EVRK
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHPVNGHDREVRK 180
Query: 601 ALSKQEM 621
AL KQEM
Sbjct: 181 ALWKQEM 187
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,764,665
Number of extensions: 602759
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 364
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 573
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-105
Alignment gi|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-105
Alignment gi|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-l... 370 e-102
Alignment gi|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-l... 370 e-102
Alignment gi|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Hom... 336 2e-92
Alignment gi|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 ... 309 3e-84
Alignment gi|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 ... 309 3e-84
Alignment gi|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Hom... 220 2e-57
Alignment gi|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isof... 165 6e-41
Alignment gi|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 i... 165 6e-41
>ref|NP_112420.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo
sapiens].
Length = 372
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|NP_002127.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo
sapiens].
Length = 320
Score = 380 bits (976), Expect = e-105
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|NP_001011725.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
Length = 320
Score = 370 bits (949), Expect = e-102
Identities = 181/186 (97%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 604 LSKQEM 621
L KQEM
Sbjct: 181 LPKQEM 186
>ref|NP_001011724.1| heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens].
Length = 320
Score = 370 bits (949), Expect = e-102
Identities = 181/186 (97%), Positives = 181/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKS SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMN PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV GHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 604 LSKQEM 621
L KQEM
Sbjct: 181 LPKQEM 186
>ref|NP_919223.1| heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens].
Length = 378
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 610 KQEM 621
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
sapiens].
Length = 353
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
sapiens].
Length = 341
Score = 309 bits (791), Expect = 3e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 2e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens].
Length = 305
Score = 220 bits (560), Expect = 2e-57
Identities = 106/178 (59%), Positives = 132/178 (74%)
Frame = +1
Query: 88 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 267
E QL KLFIGGL+ +T++ LR HFE +GTLTDCVV+ +P TKRSR FGFVTY+ VEE
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 268 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 447
DAAM A PH VDG VE KRAVSREDS RPGAH VKK+FVGG+K D E L ++F Q+
Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 448 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
G +E EI+ D+ SGKKRGF FV F +HD+ DK + K+H + GH EV+KA+ K+++
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDI 179
Score = 65.9 bits (159), Expect = 5e-11
Identities = 32/91 (35%), Positives = 50/91 (54%)
Frame = +1
Query: 73 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 252
S P +++KLF+GGL + + L HF Q+GT+ ++ D + + RGFGFV +
Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
Query: 253 TVEEVDAAMNARPHKVDGRVVEPKRAVSRED 345
+ D A + H + G VE K+AV +ED
Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
>ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo
sapiens].
Length = 336
Score = 165 bits (417), Expect = 6e-41
Identities = 78/184 (42%), Positives = 121/184 (65%)
Frame = +1
Query: 67 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 607 SKQE 618
SK++
Sbjct: 240 SKEQ 243
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 354
E V M + H V E K A+S+E Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246
>ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo
sapiens].
Length = 287
Score = 165 bits (417), Expect = 6e-41
Identities = 78/184 (42%), Positives = 121/184 (65%)
Frame = +1
Query: 67 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 246
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
Query: 247 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 426
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
Query: 427 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 606
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
Query: 607 SKQE 618
SK++
Sbjct: 240 SKEQ 243
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 211
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 354
E V M + H V E K A+S+E Q+
Sbjct: 212 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 246
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,256,746
Number of extensions: 588885
Number of successful extensions: 2427
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 2212
Number of HSP's successfully gapped: 198
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 i... 380 e-106
Alignment gi|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isof... 380 e-106
Alignment gi|NP_001159443.1| predicted gene 5803 [Mus musculus]. 365 e-101
Alignment gi|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 1e-92
Alignment gi|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprot... 336 2e-92
Alignment gi|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 2e-92
Alignment gi|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isof... 336 2e-92
Alignment gi|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleop... 335 2e-92
>ref|NP_001034218.1| heterogeneous nuclear ribonucleoprotein A1 isoform b [Mus
musculus].
Length = 373
Score = 380 bits (976), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|NP_034577.1| heterogeneous nuclear ribonucleoprotein A1 isoform a [Mus
musculus].
Length = 320
Score = 380 bits (976), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|NP_001159443.1| predicted gene 5803 [Mus musculus].
Length = 320
Score = 365 bits (938), Expect = e-101
Identities = 177/186 (95%), Positives = 182/186 (97%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSF+TTD+SLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFQTTDKSLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDG+VVEPKRA+SR+DSQRPGAHL VKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGKVVEPKRAISRQDSQRPGAHLIVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKR FAFVTFDDHDSVD IVIQKYH VNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRDFAFVTFDDHDSVDTIVIQKYHNVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_003086393.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Mus
musculus].
Length = 362
Score = 336 bits (862), Expect = 1e-92
Identities = 164/206 (79%), Positives = 179/206 (86%)
Frame = +1
Query: 4 PFCPRTPPSKHRCNLLPTTVMSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL 183
P CP+ + R + PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTL
Sbjct: 7 PGCPQPDSGRRRRRR-----GEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTL 61
Query: 184 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
TDCVVMRDP TKRSRGFGFVTY+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGA
Sbjct: 62 TDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGA 121
Query: 364 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 543
HLTVKKIFVGGIKEDTEE++LRDYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VD
Sbjct: 122 HLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVD 181
Query: 544 KIVIQKYHTVNGHNCEVRKALSKQEM 621
KIV+QKYHT+NGHNCEV+KALSKQEM
Sbjct: 182 KIVVQKYHTINGHNCEVKKALSKQEM 207
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
>ref|XP_993338.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
16 [Mus musculus].
Length = 350
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 610 KQEM 621
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|XP_003086888.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like, partial
[Mus musculus].
Length = 209
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 610 KQEM 621
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|NP_444493.1| heterogeneous nuclear ribonucleoprotein A3 isoform c [Mus
musculus].
Length = 357
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 610 KQEM 621
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|NP_666242.2| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
musculus].
Length = 379
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 610 KQEM 621
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|NP_932758.1| heterogeneous nuclear ribonucleoprotein A3 isoform a [Mus
musculus].
Length = 379
Score = 336 bits (861), Expect = 2e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 610 KQEM 621
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003086002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Mus musculus].
Length = 332
Score = 335 bits (860), Expect = 2e-92
Identities = 159/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHK+DGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKIDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 610 KQEM 621
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 7e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,299,021
Number of extensions: 504574
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 204
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [... 380 e-106
Alignment gi|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 1e-92
Alignment gi|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleop... 336 1e-92
Alignment gi|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleop... 309 2e-84
Alignment gi|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleop... 306 8e-84
Alignment gi|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleop... 290 6e-79
Alignment gi|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleop... 252 2e-67
Alignment gi|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleop... 252 2e-67
>ref|NP_001070686.1| heterogeneous nuclear ribonucleoprotein A1 [Sus scrofa].
Length = 320
Score = 380 bits (976), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Frame = +1
Query: 64 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 243
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV
Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60
Query: 244 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 423
TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH
Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 424 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 603
LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 604 LSKQEM 621
LSKQEM
Sbjct: 181 LSKQEM 186
>ref|XP_003359613.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
2 [Sus scrofa].
Length = 357
Score = 336 bits (861), Expect = 1e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 2 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 62 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 181
Query: 610 KQEM 621
KQEM
Sbjct: 182 KQEM 185
Score = 68.6 bits (166), Expect = 5e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 85 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 144
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 145 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 190
>ref|XP_003133549.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like isoform
1 [Sus scrofa].
Length = 379
Score = 336 bits (861), Expect = 1e-92
Identities = 160/184 (86%), Positives = 173/184 (94%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 609
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV+QKYHT+NGHNCEV+KALS
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203
Query: 610 KQEM 621
KQEM
Sbjct: 204 KQEM 207
Score = 68.6 bits (166), Expect = 5e-12
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +S+ +S K L +K+F+GG+ +T + +LR +FE++G + VM D + +
Sbjct: 107 PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKK 166
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGA 363
RGF FVT+ + VD + + H ++G E K+A+S+++ Q G+
Sbjct: 167 RGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGS 212
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 353
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|XP_003360235.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Sus scrofa].
Length = 353
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 193
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 93 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 152
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 153 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194
>ref|XP_003360234.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Sus scrofa].
Length = 341
Score = 309 bits (791), Expect = 2e-84
Identities = 144/179 (80%), Positives = 166/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGKI+ IEI+TDR SGKKRGF FVTFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 181
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 81 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKK 140
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGFVT+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 141 RGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
>ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 447
Score = 306 bits (785), Expect = 8e-84
Identities = 142/179 (79%), Positives = 165/179 (92%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGLSFETT+ESLR+++EQWG LTDCVVMRDP +KRSRGFGFVT++++ E
Sbjct: 109 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 168
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVVEPKRAV+RE+S +PGAH+TVKK+FVGGIKEDTEEHHLRDYFE+
Sbjct: 169 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 228
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YGK++ IEI+TDR SGKKRGF F TFDDHD VDKIV+QKYHT+NGHN EVRKALS+QEM
Sbjct: 229 YGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM 287
Score = 64.7 bits (156), Expect = 7e-11
Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +1
Query: 52 PTTVMSKSESPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 225
P +++ ES K + +KLF+GG+ +T + LR +FE++G + ++ D + +
Sbjct: 187 PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKK 246
Query: 226 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ 351
RGFGF T+ + VD + + H ++G E ++A+SR++ Q
Sbjct: 247 RGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 288
>ref|XP_003359614.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Sus
scrofa].
Length = 290
Score = 290 bits (743), Expect = 6e-79
Identities = 141/165 (85%), Positives = 151/165 (91%)
Frame = +1
Query: 70 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 249
+ PKEPEQLRKLFIGGLSFETTD+SLR HFE+WGTLTDCVVMRDP TKRSRGFGFVTY
Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Query: 250 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 429
+ VEEVDAAM ARPHKVDGRVVEPKRAVSREDS +PGAHLTVKKIFVGGIKEDTEE++LR
Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 430 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 564
DYFE+YGKIE IE+M DR SGKKRGFAFVTFDDHD+VDKIV Y
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVGGNY 188
Score = 63.5 bits (153), Expect = 2e-10
Identities = 33/111 (29%), Positives = 61/111 (54%)
Frame = +1
Query: 286 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 465
RP GR +R E+ P ++K+F+GG+ +T + LR++FE++G +
Sbjct: 9 RPQPDSGR----RRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDC 64
Query: 466 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQE 618
+M D + + RGF FVT+ + VD + + H V+G E ++A+S+++
Sbjct: 65 VVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED 115
>ref|XP_003123190.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 354
Score = 252 bits (643), Expect = 2e-67
Identities = 120/179 (67%), Positives = 148/179 (82%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGL ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15 RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVV KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YG I+ IEI+ R SG+K F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191
Score = 58.2 bits (139), Expect = 7e-09
Identities = 28/83 (33%), Positives = 51/83 (61%)
Frame = +1
Query: 103 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 282
+KLF+GG+ +TT+ LR +FE++GT+ ++R K + FGFVT+ + VD +
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169
Query: 283 ARPHKVDGRVVEPKRAVSREDSQ 351
+ H ++G + ++A+SR+ Q
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQ 192
>ref|XP_003123185.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa].
Length = 354
Score = 252 bits (643), Expect = 2e-67
Identities = 120/179 (67%), Positives = 148/179 (82%)
Frame = +1
Query: 85 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 264
+E EQ RKLFIGGL ET +ESLR++++QWG LTDCVV+RDP+++RSRGFGFV +++V E
Sbjct: 15 RESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAE 74
Query: 265 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 444
VDAAM ARPH +DGRVV KR V RE+S +PGA +T KK+FVGGIKEDT E HLRDYFE+
Sbjct: 75 VDAAMAARPHSIDGRVVASKRVVPREESGKPGACVTTKKLFVGGIKEDTTERHLRDYFER 134
Query: 445 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 621
YG I+ IEI+ R SG+K F FVTFDDHD VDKIV+QKYHT+NGH+ ++ KALS+Q M
Sbjct: 135 YGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHHAQLEKALSRQGM 191
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Frame = +1
Query: 103 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 282
+KLF+GG+ +TT+ LR +FE++GT+ ++R K + FGFVT+ + VD +
Sbjct: 112 KKLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQSGRKTA--FGFVTFDDHDPVDKIVL 169
Query: 283 ARPHKVDGRVVEPKRAVSREDSQ-------RPGAHLTVKKIFVGG 396
+ H ++G + ++A+SR+ Q R G H+ I GG
Sbjct: 170 QKYHTINGHHAQLEKALSRQGMQEVQSSRRRRGRHVGFGDIPSGG 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,376,611
Number of extensions: 712536
Number of successful extensions: 1400
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 106
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001987
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 952 0.0
Sscrofa_Chr01 894 0.0
Sscrofa_Chr06 454 e-125
gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754 440 e-121
Sscrofa_Chr14 440 e-121
Sscrofa_Chr05 418 e-114
Sscrofa_Chr15 412 e-112
Sscrofa_Chr08 188 4e-45
Sscrofa_Chr16 151 8e-34
Sscrofa_Chr18 117 1e-23
>Sscrofa_Chr13
|| Length = 218635234
Score = 952 bits (480), Expect = 0.0
Identities = 619/663 (93%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 6 tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 65
|||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192087823 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192087882
Query: 66 gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 125
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192087883 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192087942
Query: 126 gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 185
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 192087943 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192088001
Query: 186 agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 245
||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192088002 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192088060
Query: 246 gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 305
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192088061 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192088119
Query: 306 aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 365
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192088120 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192088179
Query: 366 cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 425
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192088180 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192088239
Query: 426 aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 485
|||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192088240 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192088299
Query: 486 cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 545
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192088300 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192088359
Query: 546 gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 605
|| |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192088360 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192088419
Query: 606 atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 665
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192088420 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192088479
Query: 666 ctt 668
|||
Sbjct: 192088480 ctt 192088482
Score = 952 bits (480), Expect = 0.0
Identities = 619/663 (93%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 6 tttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcat 65
|||||||||| ||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct: 192326803 tttctgcccctggatgctgccgagtaagcatctttatatcctcctccccactaccgtcat 192326862
Query: 66 gtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggttt 125
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 192326863 gtctaagtcagagtctcccaaagatcccgaacagctgcagaagctcttcatcggaggttt 192326922
Query: 126 gagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcac 185
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 192326923 gagctttgaaacaactgatgagagtctgaggagccattgtgagcaatggggaatgctca- 192326981
Query: 186 agactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcac 245
||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 192326982 -gactgtgtggtaaggagggacccaaacatcaagcgccccagaggcttcgggtttgtcac 192327040
Query: 246 gtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatgg 305
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 192327041 gtatgccattgtggaggaggtggatgcagccatgaatgcaag-ctgcacaagttggatgg 192327099
Query: 306 aagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgccca 365
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 192327100 aagagttgtggaaccaaagagggtcttctcaagagaagattctcaaagacctggtgccca 192327159
Query: 366 cttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacct 425
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 192327160 cttaactgtgaaaaagatttttgtgggtggcattaaagaagacactcaagaacatcacct 192327219
Query: 426 aagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacagggg 485
|||||| ||||||||| ||||||||||||| ||||||| |||||||||||| ||| | ||
Sbjct: 192327220 aagagagtattttgaagagtatgggaaaattgaagtgactgaaatcatgactgaccgagg 192327279
Query: 486 cagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaa 545
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 192327280 cagtggcagaaagagaggttttgcttttgtaacctttgatgaccatgactctgcagacaa 192327339
Query: 546 gattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccct 605
|| |||| ||||||||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct: 192327340 gactgtcgttcagaaataccacactatgactggccaaaactgtgaagtgaggagagccct 192327399
Query: 606 atccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaa 665
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192327400 atccaagcaaaagatggctagtgcttcatccagccaaagaggtcaaagtggttctggaaa 192327459
Query: 666 ctt 668
|||
Sbjct: 192327460 ctt 192327462
Score = 73.8 bits (37), Expect = 2e-10
Identities = 92/109 (84%), Gaps = 1/109 (0%)
Strand = Plus / Minus
Query: 487 agtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaag 546
||||| ||||||||||| |||| |||||||| ||||||||| ||||| | || || ||
Sbjct: 155821422 agtgggaaaaagagagggtttg-ttttgtaatttttgatgatcatgatacagttgataaa 155821364
Query: 547 attgtcattcagaaataccacactgtgaatggccacaactgtgaagtga 595
| ||| |||||||||||||||||| | ||||| ||||| ||||||||||
Sbjct: 155821363 actgttattcagaaataccacactataaatgggcacaattgtgaagtga 155821315
>Sscrofa_Chr01
|| Length = 315321322
Score = 894 bits (451), Expect = 0.0
Identities = 616/671 (91%), Gaps = 10/671 (1%)
Strand = Plus / Minus
Query: 2 ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 61
||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 276569465 ctcctttctgctcccggacgccgccaagtaagcatcgttacattctcctccccactacca 276569406
Query: 62 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
|||||||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 276569405 tcatgtctaaatcagagtctcccaaagagcccgaacagttgcggaaggtcttcctcggag 276569346
Query: 122 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 276569345 gtttgagctttgaaacaaccgatgagagactgaggagccattctgagcaatggggaacgc 276569286
Query: 182 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 276569285 tcacagactgtgtggtaaggagggacccaaacaccaagcgctccagaggcttcaggtttg 276569226
Query: 242 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 276569225 tcacgtacaccactgtggaggaggtggacacagccatgaatacaaggccacacaaggtgg 276569166
Query: 302 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 276569165 atggaagagttgtggaaccaaggagggctgtctcaagagaagattctcaaagacctggtg 276569106
Query: 362 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276569105 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 276569046
Query: 422 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||
Sbjct: 276569045 atctaagagagtattttgaacagtatgggaaaattgaagtgattggaatcatgactgacc 276568986
Query: 482 ggggcagtggca----aaaagagaggttttgcttttgtaacttttgatgaccatgactcc 537
|||||||||| |||| |||||||||||||||||||| || || ||||||||||
Sbjct: 276568985 aaggcagtggcaaaaaaaaaaagaggttttgcttttgtaaccttcaataaccatgactct 276568926
Query: 538 gtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgagg 597
|| || |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 276568925 gt------gactgtcatccagaaataccacactgtgaatggccacaactatgaagtgagg 276568872
Query: 598 aaagccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggt 657
||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 276568871 aaagctctatccaagaaagagatgtctaatgcttcatccagccaaagaggtcgaagtggt 276568812
Query: 658 tctggaaactt 668
|||||||||||
Sbjct: 276568811 tctggaaactt 276568801
Score = 846 bits (427), Expect = 0.0
Identities = 600/656 (91%), Gaps = 5/656 (0%)
Strand = Plus / Plus
Query: 13 ccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtcatgtctaag 72
|||| ||||| ||| ||||||||||| | || ||||||||| |||| ||| |||| |||
Sbjct: 293612865 cccccgacgctgccaagtaagcatcgatatatcctcctcccacctactgtcgtgtcgaag 293612924
Query: 73 tcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagcttt 132
|||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 293612925 tcagagtctcccaaggagcctgaactt----ggaagcttttcatcggaggtttgagcttt 293612980
Query: 133 gaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgt 192
||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||||| |
Sbjct: 293612981 gaaacaaccgatgagggactgaggagccattctgagccatggggaacgctcacagaccat 293613040
Query: 193 gtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgcc 252
| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613041 gcggtgatgaggggcccaaacaccaagcgctccagaggcttcgggtttgtcacgtatgcc 293613100
Query: 253 actgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagtt 312
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293613101 actgtgggggaggtggatgcagccatgaatgcaaggccacacaaggtggatggaagagtt 293613160
Query: 313 gtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaact 372
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct: 293613161 gtggaaccaaagagggc-gtctccagagaagattctcaacgacctggtgcccactgaact 293613219
Query: 373 gtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagat 432
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 293613220 gtgaaaaagatttttgtcggtggcattaaagaagacactgaagaacatcacctaagaggt 293613279
Query: 433 tattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggc 492
||||||||| || |||||||| | ||||||||||||||||||| ||| | ||||| |||
Sbjct: 293613280 gattttgaaccgtgtgggaaaaccaaagtgattgaaatcatgactgactgaggcaggggc 293613339
Query: 493 aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtc 552
||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 293613340 aaaaagagaggttttgcttttctaacctttgatgaccatgactctgtagacaagattgtc 293613399
Query: 553 attcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaag 612
||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 293613400 attcagaaataccacgtggtgaagggccacaactgtgaagtaaggaaagccctatccaag 293613459
Query: 613 caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 293613460 caagagatggctagtgcttcatccagccaaagaggtcgaagtggttctagaaactt 293613515
Score = 58.0 bits (29), Expect = 9e-06
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 493 aaaaagagaggttttgcttttgtaacttttgatgaccatga 533
|||||||||| ||||||||||||||||||||||| |||||
Sbjct: 266958749 aaaaagagagcatttgcttttgtaacttttgatgagcatga 266958789
>Sscrofa_Chr06
|| Length = 157765593
Score = 454 bits (229), Expect = e-125
Identities = 414/471 (87%), Gaps = 6/471 (1%)
Strand = Plus / Minus
Query: 200 tgagggacccaaacaccaagcgctccagagg-tttcgggtttgtcacgtatgccactgtg 258
||||||||||| | ||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct: 39293791 tgagggacccagataccaagccttccagaggctttaagttttgtcacgtatgccactgtg 39293732
Query: 259 gaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaa 318
||| ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 39293731 gagaaggtggatggggccatgaatgcaaggccacacaagggggatgaaagagttgtggaa 39293672
Query: 319 ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 378
|||||| ||| |||||||||||||||||||| |||||||||| ||||| ||| |||
Sbjct: 39293671 ccaaagcaggctgtctcaagagaagattctcagggacctggtgcttacttagctgagaa- 39293613
Query: 379 aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 438
||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct: 39293612 --gatttttgttggtcgcattgaagaagacactgaaga-catcatctaagagattatttt 39293556
Query: 439 gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaa- 497
|||| ||||||||||| ||||||| |||||||||||| ||| | |||||| ||||||
Sbjct: 39293555 gaacggtatgggaaaactgaagtgactgaaatcatgactgactgaggcagtatcaaaaaa 39293496
Query: 498 gagaggttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattca 557
|||||| |||||||| ||||| |||||||| |||||||| |||||| |||||||| |||
Sbjct: 39293495 gagaggctttgctttggtaacctttgatgaacatgactctgtagacgagattgtccttcg 39293436
Query: 558 gaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagcaaga 617
|||||||| |||||| ||||| |||||||||||||| || |||||| ||| |||||||||
Sbjct: 39293435 gaaatacctcactgtcaatggtcacaactgtgaagtaagtaaagccttattcaagcaaga 39293376
Query: 618 gatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
|||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 39293375 gatggctagtgcttcatccagccaaagaggtctaagtgcttctggaaactt 39293325
>gb|JH118686.1| Sus scrofa unplaced genomic scaffold ChrUScaf1754
Length = 197135
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Minus
Query: 62 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 150407 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 150348
Query: 122 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 150347 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 150288
Query: 182 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 150287 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 150232
Query: 242 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 150231 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 150175
Query: 302 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 150174 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 150132
Query: 362 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 150131 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 150072
Query: 422 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 150071 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 150012
Query: 482 ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
| |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 150011 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 149952
Query: 541 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 149951 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 149908
Query: 601 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 149907 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 149848
Query: 661 ggaaactt 668
||||||||
Sbjct: 149847 ggaaactt 149840
>Sscrofa_Chr14
|| Length = 153851969
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Minus
Query: 62 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 112311155 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112311096
Query: 122 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112311095 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112311036
Query: 182 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112311035 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112310980
Query: 242 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 112310979 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112310923
Query: 302 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 112310922 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112310880
Query: 362 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112310879 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112310820
Query: 422 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 112310819 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112310760
Query: 482 ggggcagtggca-aaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
| |||||||||| |||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112310759 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112310700
Query: 541 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 112310699 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112310656
Query: 601 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112310655 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112310596
Query: 661 ggaaactt 668
||||||||
Sbjct: 112310595 ggaaactt 112310588
Score = 440 bits (222), Expect = e-121
Identities = 510/608 (83%), Gaps = 41/608 (6%)
Strand = Plus / Plus
Query: 62 tcatgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggag 121
||||| ||||||||||||| |||||||| || ||| ||||| |||||||||||| ||||
Sbjct: 112511905 tcatgcctaagtcagagtcccccaaagatccggaaaagctgtagaagctcttcattggag 112511964
Query: 122 gtttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgc 181
|||||| ||||||||||||| || |||||||||||||||||| ||||||||||| || ||
Sbjct: 112511965 gtttgaactttgaaacaaccaattagagtctgaggagccattctgagcaatgggaaaggc 112512024
Query: 182 tcacagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttg 241
|||||||||| ||||||||| ||| |||||||||| |||||||||| ||| ||| ||
Sbjct: 112512025 tcacagactg----gtaatgaggtacctaaacaccaagtgctccagaggcttcaggtctg 112512080
Query: 242 tcacgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtgg 301
|||| | ||||| |||||||| || ||||||||||||||||||| || |||||||| |
Sbjct: 112512081 tcacatgtgccagtgtggaggcgg---atgcagccatgaatgcaagaccacacaaggtag 112512137
Query: 302 atggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtg 361
| ||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct: 112512138 a---------------accaa-gagggccatctcaagagaagattctcaaagaccct-tg 112512180
Query: 362 cccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatc 421
|| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 112512181 cctacttaactgtgaaaaatatttttgttggtggcattagagaagacactgaaaaacatc 112512240
Query: 422 acctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggaca 481
|||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct: 112512241 acctaagaaattgttttgaacagtgtgggaaaattgaagtgattgaaatcatgactgatg 112512300
Query: 482 ggggcagtggc-aaaaagagaggttttgcttttgtaacttttgatgaccatgactccgta 540
| ||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||| ||
Sbjct: 112512301 gaggcagtggcaaaaaagagaggctttgctcttgtaacctttgatgaccatgactccata 112512360
Query: 541 gacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaagtgaggaaa 600
||||||||| || |||||||||||||| |||||||| | || |||
Sbjct: 112512361 gacaagattatcgttcagaaataccac----------------actgtgaaataagaaaa 112512404
Query: 601 gccctatccaagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttct 660
|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct: 112512405 accctatccaagcaagagatgtttagtgcttcatacaaccaaagaggtcaaagtggttct 112512464
Query: 661 ggaaactt 668
||||||||
Sbjct: 112512465 ggaaactt 112512472
Score = 159 bits (80), Expect = 3e-36
Identities = 173/204 (84%)
Strand = Plus / Plus
Query: 270 tgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaagagggc 329
||||||| |||||||||||| || || |||||||||||||||| |||||||||| |||
Sbjct: 51614704 tgcagccgggaatgcaaggccacatcagatggatggaagagttgtagaaccaaagaaggc 51614763
Query: 330 cgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagatttttgt 389
||||| |||| ||| | |||| ||| |||||||| || |||||||||||||||| ||
Sbjct: 51614764 tgtctccagaggagactttcaaggactgggtgcccatttcactgtgaaaaagatttctgg 51614823
Query: 390 tggtggcattaaagaagacactgaagaacatcacctaagagattattttgaacagtatgg 449
||||||||||||||| |||| || |||||||||| | |||||||||||| ||||| |||
Sbjct: 51614824 tggtggcattaaagatgacatcgaggaacatcacccatgagattattttggacagtgtgg 51614883
Query: 450 gaaaatcgaagtgattgaaatcat 473
|| || |||||||| |||||||||
Sbjct: 51614884 gagaaccgaagtgactgaaatcat 51614907
>Sscrofa_Chr05
|| Length = 111506441
Score = 418 bits (211), Expect = e-114
Identities = 211/211 (100%)
Strand = Plus / Plus
Query: 343 gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330904 gattctcaaagacctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaa 20330963
Query: 403 gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330964 gaagacactgaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtg 20331023
Query: 463 attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331024 attgaaatcatgacggacaggggcagtggcaaaaagagaggttttgcttttgtaactttt 20331083
Query: 523 gatgaccatgactccgtagacaagattgtca 553
|||||||||||||||||||||||||||||||
Sbjct: 20331084 gatgaccatgactccgtagacaagattgtca 20331114
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 195 ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330626 ggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccac 20330685
Query: 255 tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330686 tgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgt 20330745
Query: 315 ggaaccaaagagggccgtctcaagagaag 343
|||||||||||||||||||||||||||||
Sbjct: 20330746 ggaaccaaagagggccgtctcaagagaag 20330774
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 77 agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330215 agtctcccaaagagcccgaacagctgcggaagctcttcatcggaggtttgagctttgaaa 20330274
Query: 137 caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20330275 caaccgatgagagtctgaggagccattttgagcaatggggaacgctcacagactgtgtgg 20330334
Query: 197 taa 199
|||
Sbjct: 20330335 taa 20330337
Score = 226 bits (114), Expect = 2e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 834 ccctggttactctggaggaagcagaggctatggaagtggtggacagggttatggaaacca 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331954 ccctggttactctggaggaagcagaggctatggaagtggtggacagggttatggaaacca 20332013
Query: 894 gggcagtggctatggcgggagtggcagctatgacagctataacaacggaggaagcgga 951
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 20332014 gggcagtggctatggcgggagtggcagctatgacagctataacaacggaggaggcgga 20332071
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 554 ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20331206 ttcagaaataccacactgtgaatggccacaactgtgaagtgaggaaagccctatccaagc 20331265
Query: 614 aagagatggctagtgcttcatccagccaaagaggt 648
|||||||||||||||||||||||||||||||||||
Sbjct: 20331266 aagagatggctagtgcttcatccagccaaagaggt 20331300
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 2 ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20329595 ctcctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccg 20329654
Query: 62 tcatgtctaagtcagag 78
|||||||||||||||||
Sbjct: 20329655 tcatgtctaagtcagag 20329671
>Sscrofa_Chr15
|| Length = 157681621
Score = 412 bits (208), Expect = e-112
Identities = 374/426 (87%), Gaps = 5/426 (1%)
Strand = Plus / Minus
Query: 146 agagtctgaggagccattttgagcaatggggaacgctcacagactgtgtggtaatgaggg 205
|||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||
Sbjct: 88607440 agagtctgaggagccattctgagaaatgggcaacaatcacagactgtgtggtaatgaggg 88607381
Query: 206 acccaaacaccaagcgctccagaggtttcgggtttgtcacgtatgccact--gtggagga 263
| | | ||||| ||||||||| ||||||||||| | | |||| | | ||||||
Sbjct: 88607380 aggct--cgccaagtcctccagaggcttcgggtttgttatgaatgctccgtggaggagga 88607323
Query: 264 ggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaaa 323
||||||||||||||||||||| |||| ||||| ||||||||||||| ||||| | ||||
Sbjct: 88607322 ggtggatgcagccatgaatgcggggccacacaaagtggatggaagagctgtgggatcaaa 88607263
Query: 324 gagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaagat 383
|||| | |||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 88607262 gaggcctgtctcaagagcagattctcaaagacctggtgctcccttaactgtgaaaaagat 88607203
Query: 384 ttttgttggtggcattaaagaagacactgaagaacatcacctaagagattattttgaaca 443
||||||||||||| |||| ||||||||||||||||| ||| || ||||||||||||||
Sbjct: 88607202 ttttgttggtggccttaagcgagacactgaagaacatcccctgagggattattttgaaca 88607143
Query: 444 gtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggcaaaaagagagg 503
|||||||||||| ||||| | |||||||||||| ||| | ||||||||||||||||||||
Sbjct: 88607142 gtatgggaaaattgaagt-actgaaatcatgactgactgaggcagtggcaaaaagagagg 88607084
Query: 504 ttttgcttttgtaacttttgatgaccatgactccgtagacaagattgtcattcagaaata 563
|||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 88607083 ctttgcttttgtaacctctgatgaccatgactcggtagacaagattgtcattcagaaata 88607024
Query: 564 ccacac 569
||||||
Sbjct: 88607023 ccacac 88607018
Score = 77.8 bits (39), Expect = 1e-11
Identities = 144/179 (80%)
Strand = Plus / Plus
Query: 355 cctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaa 414
||||||||||| |||| ||||| || |||||||||||||| |||||||||||||| ||
Sbjct: 92420504 cctggtgcccatctaacagtgaagaaaatttttgttggtggtattaaagaagacacagag 92420563
Query: 415 gaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatg 474
||| | | | ||||| || |||||| ||||||| ||||| ||| || ||| | |||
Sbjct: 92420564 gaatacaatttgagagactactttgaaaagtatggcaaaattgaaaccatagaagttatg 92420623
Query: 475 acggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatga 533
|||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 92420624 gaagacaggcagagtgggaaaaagagaggatttgcttttgtaactttcgatgatcatga 92420682
Score = 75.8 bits (38), Expect = 4e-11
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 368 taactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaa 427
|||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||| || || |
Sbjct: 59811159 taactgtgaagaagctatttgttggtggaattaaagaagatactgaggaacaccatctta 59811218
Query: 428 gagattattttgaacagtatgggaaa 453
||||||| ||||| |||||||||||
Sbjct: 59811219 gagattactttgaggagtatgggaaa 59811244
>Sscrofa_Chr08
|| Length = 148491826
Score = 188 bits (95), Expect = 4e-45
Identities = 217/255 (85%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 412 gaagaacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatc 471
|||| ||||||||| |||||| | || |||||| |||||||| |||||||||||||||
Sbjct: 34648560 gaaggacatcacctgagagatgacttccaacagtgtgggaaaagtgaagtgattgaaatc 34648619
Query: 472 atgacggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccat 531
||||| ||| ||||||| ||||||||||| |||||||||||||| | ||||||||||
Sbjct: 34648620 atgactgacccaggcagtgagaaaaagagaggctttgcttttgtaacctctgatgaccat 34648679
Query: 532 gactccgtagacaagattgtcattcagaaataccacactgtgaatggccacaactgtgaa 591
||||| | || ||||| |||| |||||||||| |||| || |||||||||||| ||||
Sbjct: 34648680 gactctgcaggcaagactgtccttcagaaatatcaca-tgcaaatggccacaacggtgat 34648738
Query: 592 gtgaggaaagccctatccaag-caagagatggctagtgcttcatccagccaaagaggtcg 650
|| ||||| |||| ||||||| ||||||||||||||||||||| | |||||| |||||
Sbjct: 34648739 gtaaggaaggccccatccaagccaagagatggctagtgcttcacctggccaaaaaggtca 34648798
Query: 651 aagtggttctggaaa 665
|||||||||||||||
Sbjct: 34648799 aagtggttctggaaa 34648813
Score = 178 bits (90), Expect = 4e-42
Identities = 335/412 (81%), Gaps = 6/412 (1%)
Strand = Plus / Plus
Query: 4 cctttctgcccccggacgccgccgagtaagcatcgttgtaacctcctccccactaccgtc 63
|||||||||| || ||||| || ||||||| || || | |||| |||||||| |||||
Sbjct: 34647864 cctttctgcctgcgaacgccacccagtaagcctcattatggcctcttccccactgccgtc 34647923
Query: 64 atgtctaagtcagagtctcccaaagagcccgaacagctgcggaagctcttcatcggaggt 123
| || ||||| ||||||||||||||||| ||| |||||| ||||| |||||| || ||
Sbjct: 34647924 acatccaagtccgagtctcccaaagagccagaatagctgcagaagcgcttcattagatgt 34647983
Query: 124 ttgagctttgaaacaaccgatgagagtctgaggagccattttgagcaatggggaacgctc 183
|||| ||| ||||||| ||| ||||||||| |||||||| |||||||||||||| ||||
Sbjct: 34647984 gtgagttttcaaacaactgataagagtctgaagagccattgtgagcaatggggaaggctc 34648043
Query: 184 acagactgtgtggtaatgagggacccaaacaccaagcgctccagaggtttcgggtttgtc 243
|||| | |||| | | |||| |||||||||||||| ||||||| | | |||||||||
Sbjct: 34648044 acaggcagtgtagcgacgaggaacccaaacaccaagtgctccagcagctctgggtttgtc 34648103
Query: 244 acgtatgccactgtggaggaggtggatgcagccatgaatgcaaggccgcacaaggtggat 303
||||||| | |||||||||| | || ||||||||||||||||||||| ||| |||||
Sbjct: 34648104 acgtatgaccctgtggagga-gagggtgcagccatgaatgcaaggccaggcaaagtggac 34648162
Query: 304 ggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagacctggtgcc 363
|| |||||| |||| ||| | |||| ||||||||||||||||| | ||||||
Sbjct: 34648163 atcagtgttgtgaaacc--agaaaatcatctc--gagaagattctcaaagaaccggtgcc 34648218
Query: 364 cacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaag 415
||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 34648219 cactttgctgtgaaaaaga-agctgtcggtggcattaaagaagacactgaag 34648269
>Sscrofa_Chr16
|| Length = 86898991
Score = 151 bits (76), Expect = 8e-34
Identities = 151/175 (86%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 319 ccaaagagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaa 378
|||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 68793851 ccaaagagggatgtgtcaagagaagattctcaaagaccaggtgcccaattaacagtgaaa 68793910
Query: 379 aagatttttgttggtggcattaaagaagacactgaagaacatcacctaagagattatttt 438
| || ||||||||| ||||| ||||||||||||||| ||| ||| ||||| ||||||
Sbjct: 68793911 aggacttttgttggcggcat--cagaagacactgaagagcattacccaagaggttatttc 68793968
Query: 439 gaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggcagtggca 493
|| |||| || ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 68793969 gagcagtgtgcgaaaatcgaagtgattgaaatcatgactgaccaaggcagtggca 68794023
Score = 121 bits (61), Expect = 7e-25
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 263 aggtggatgcagccatgaatgcaaggccgcacaaggtggatggaagagttgtggaaccaa 322
||||| ||||||||||| ||| |||||| | |||||||||||||||||||| | ||||||
Sbjct: 32505349 aggtgaatgcagccatgcatgtaaggccacccaaggtggatggaagagttgggaaaccaa 32505290
Query: 323 agagggccgtctcaagagaagattctcaaagacctggtgcccacttaactgtgaaaaaga 382
|| | | || |||||||| ||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 32505289 agggcactgtttcaagagaggattctcaaagacttggggcccacttaactgtganaaaga 32505230
Query: 383 tttt 386
||||
Sbjct: 32505229 tttt 32505226
Score = 77.8 bits (39), Expect = 1e-11
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 428 gagattattttgaacagtatgggaaaatcgaagtgattgaaatcatgacggacaggggca 487
|||||||||||||||||||||||||||| ||||||||||| |||| || ||| | ||||
Sbjct: 32503771 gagattattttgaacagtatgggaaaattgaagtgattgatatcacaactgacggaggca 32503712
Query: 488 gtggcaa 494
|||||||
Sbjct: 32503711 gtggcaa 32503705
Score = 61.9 bits (31), Expect = 6e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 610 aagcaagagatggctagtgcttcatccagccaaagaggtcgaagtggttctggaaactt 668
|||||| | ||||||||||||||||||||||||||| | | |||||||||| ||||||
Sbjct: 32503599 aagcaaaaaatggctagtgcttcatccagccaaagaagccctagtggttctgcaaactt 32503541
>Sscrofa_Chr18
|| Length = 61220071
Score = 117 bits (59), Expect = 1e-23
Identities = 216/267 (80%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 296 aggtggatggaagagttgtggaaccaaagagggccgtctcaagagaagattctcaaagac 355
||||| |||||||||||||| ||||||||| | | |||||||||||| | ||||||||
Sbjct: 30783288 aggtgtatggaagagttgtg-aaccaaagaagcctgtctcaagagaaagtgttcaaagac 30783230
Query: 356 ctggtgcccacttaactgtgaaaaagatttttgttggtggcattaaagaagacactgaag 415
| |||||||| ||| || ||||||||| |||| || ||| | |||||| ||||||||
Sbjct: 30783229 caggtgcccagttacctatgaaaaagacccttgtcagtagcagtgaagaaggcactgaag 30783170
Query: 416 aacatcacctaagagattattttgaacagtatgggaaaatcgaagtgattgaaatcatga 475
||||||| |||||||||||| ||| |||||| ||| | ||| ||||||||||||| |
Sbjct: 30783169 aacatcatgtaagagattattctgagcagtataagaagaatgaaatgattgaaatcatta 30783110
Query: 476 cggacaggggcagtggcaaaaagagaggttttgcttttgtaacttttgatgaccatgact 535
| ||| |||||||| | | ||||||| |||||||||||||| |||| ||||| |||
Sbjct: 30783109 ctgactagggcagtgacgagaagagagcctttgcttttgtaacctttggtgacctcaact 30783050
Query: 536 ccgtagacaagattgtcattcagaaat 562
|| | | |||| ||||||||||||||
Sbjct: 30783049 ccattaataagactgtcattcagaaat 30783023
Score = 79.8 bits (40), Expect = 3e-12
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 368 taactgtgaaaaagatttttgttggtggcattaaagaagacactgaagaacatcacctaa 427
|||||||||| ||| | ||||||||||| ||||||||||| ||||| ||||| || || |
Sbjct: 50984312 taactgtgaagaagctatttgttggtggaattaaagaagatactgaggaacaccatctta 50984371
Query: 428 gagattattttgaacagtatgggaaaat 455
||||||| ||||| |||||||||||||
Sbjct: 50984372 gagattactttgaggagtatgggaaaat 50984399
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,854,859
Number of extensions: 215
Number of successful extensions: 215
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 48
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)