Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taur... 198 7e-51
Alignment gi|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taur... 78 1e-14
Alignment gi|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taur... 78 1e-14
>ref|NP_001014950.1| DNA-binding protein inhibitor ID-3 [Bos taurus].
Length = 119
Score = 198 bits (503), Expect = 7e-51
Identities = 101/119 (84%), Positives = 102/119 (85%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKALSPVRGCYEAVCCLSERSLAIARGRGK PAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKSPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 254 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 430
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISNDQ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDQRSFCH 119
>ref|NP_001091037.1| DNA-binding protein inhibitor ID-1 [Bos taurus].
Length = 154
Score = 77.8 bits (190), Expect = 1e-14
Identities = 47/90 (52%), Positives = 62/90 (68%), Gaps = 8/90 (8%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAA-------EEPLS-LLDDMNHCYSRLR 229
+KA G E V CLSE+S+AI+R G GP A E+P++ LL DMN CYSRL+
Sbjct: 18 LKAGKAAGGAGEVVRCLSEQSVAISRCAG-GPGARLPALLEEQPVNVLLYDMNGCYSRLK 76
Query: 230 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
ELVP +P+ ++S+VEILQ VIDYI DL++
Sbjct: 77 ELVPTLPQNRKVSRVEILQHVIDYIWDLEL 106
>ref|NP_001029403.1| DNA-binding protein inhibitor ID-2 [Bos taurus].
Length = 134
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/82 (50%), Positives = 58/82 (70%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKA SPVR + LS+ L I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHGLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 254 GTQLSQVEILQRVIDYILDLQV 319
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,524,046
Number of extensions: 1134195
Number of successful extensions: 5717
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5605
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lu... 199 4e-51
Alignment gi|XP_852210.1| PREDICTED: similar to DNA-binding protein inhib... 73 4e-13
Alignment gi|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding ... 71 2e-12
>ref|NP_001003025.1| DNA-binding protein inhibitor ID-3 [Canis lupus familiaris].
Length = 119
Score = 199 bits (505), Expect = 4e-51
Identities = 101/119 (84%), Positives = 103/119 (86%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 254 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 430
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISND+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDKRSFCH 119
>ref|XP_852210.1| PREDICTED: similar to DNA-binding protein inhibitor ID-1 (Inhibitor
of DNA binding 1) [Canis familiaris].
Length = 203
Score = 73.2 bits (178), Expect = 4e-13
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 229
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 67 LKAGKTAGGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 125
Query: 230 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
ELVP +P+ ++S+VEILQ VIDYI DL++
Sbjct: 126 ELVPTLPQNRKVSRVEILQHVIDYIWDLEL 155
>ref|XP_853301.1| PREDICTED: similar to inhibitor of DNA binding 4 [Canis
familiaris].
Length = 119
Score = 70.9 bits (172), Expect = 2e-12
Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 23/105 (21%)
Frame = +2
Query: 74 MKALSPVR--------GCYE---AVCCLSER-----------SLAIARGRGKGPAAEEP- 184
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAARCKAAEAAADEPA 60
Query: 185 LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
L L DMN CYSRLR LVP +P ++S+VEI+Q VIDYILDLQ+
Sbjct: 61 LCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEIMQHVIDYILDLQL 105
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,058,330
Number of extensions: 1142460
Number of successful extensions: 5876
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5804
Number of HSP's successfully gapped: 3
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapien... 197 1e-50
Alignment gi|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapien... 79 5e-15
Alignment gi|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [H... 75 1e-13
Alignment gi|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [H... 75 1e-13
Alignment gi|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapien... 71 1e-12
>ref|NP_002158.3| DNA-binding protein inhibitor ID-3 [Homo sapiens].
Length = 119
Score = 197 bits (501), Expect = 1e-50
Identities = 100/119 (84%), Positives = 102/119 (85%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 254 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 430
GTQLSQVEILQRVIDYILDLQVV IQTAEL PELVISND+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELTPELVISNDKRSFCH 119
>ref|NP_002157.2| DNA-binding protein inhibitor ID-2 [Homo sapiens].
Length = 134
Score = 79.3 bits (194), Expect = 5e-15
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 254 GTQLSQVEILQRVIDYILDLQV 319
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
>ref|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [Homo sapiens].
Length = 149
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 229
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 19 LKAGKTASGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 77
Query: 230 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
ELVP +P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 78 ELVPTLPQNRKVSKVEILQHVIDYIRDLQL 107
>ref|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [Homo sapiens].
Length = 155
Score = 74.7 bits (182), Expect = 1e-13
Identities = 46/90 (51%), Positives = 57/90 (63%), Gaps = 8/90 (8%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 229
+KA G E V CLSE+S+AI+R G G A P L L DMN CYSRL+
Sbjct: 19 LKAGKTASGAGEVVRCLSEQSVAISRCAG-GAGARLPALLDEQQVNVLLYDMNGCYSRLK 77
Query: 230 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
ELVP +P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 78 ELVPTLPQNRKVSKVEILQHVIDYIRDLQL 107
>ref|NP_001537.1| DNA-binding protein inhibitor ID-4 [Homo sapiens].
Length = 161
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 24/106 (22%)
Frame = +2
Query: 74 MKALSPVR--------GCYE---AVCCLSER------------SLAIARGRGKGPAAEEP 184
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEP 60
Query: 185 -LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
L L DMN CYSRLR LVP +P ++S+VEILQ VIDYILDLQ+
Sbjct: 61 ALCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQL 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,070,899
Number of extensions: 1100167
Number of successful extensions: 5689
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5575
Number of HSP's successfully gapped: 5
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculu... 190 2e-48
Alignment gi|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculu... 78 9e-15
Alignment gi|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculu... 71 1e-12
Alignment gi|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculu... 68 9e-12
>ref|NP_032347.1| DNA-binding protein inhibitor ID-3 [Mus musculus].
Length = 119
Score = 190 bits (482), Expect = 2e-48
Identities = 96/119 (80%), Positives = 99/119 (83%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKALSPVRGCYEAVCCLSERSLAIARGRGK P+ EEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKSPSTEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 254 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 430
GTQLSQVEILQRVIDYILDLQVV IQTAEL PELVIS D+ +FCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELTPELVISKDKRSFCH 119
>ref|NP_034626.1| DNA-binding protein inhibitor ID-2 [Mus musculus].
Length = 134
Score = 78.2 bits (191), Expect = 9e-15
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 254 GTQLSQVEILQRVIDYILDLQV 319
+++++EILQ VIDYILDLQ+
Sbjct: 56 NKKVTKMEILQHVIDYILDLQI 77
>ref|NP_112443.1| DNA-binding protein inhibitor ID-4 [Mus musculus].
Length = 161
Score = 71.2 bits (173), Expect = 1e-12
Identities = 50/106 (47%), Positives = 61/106 (57%), Gaps = 24/106 (22%)
Frame = +2
Query: 74 MKALSPVR--------GCYE---AVCCLSER------------SLAIARGRGKGPAAEEP 184
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEP 60
Query: 185 -LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
L L DMN CYSRLR LVP +P ++S+VEILQ VIDYILDLQ+
Sbjct: 61 ALCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILQHVIDYILDLQL 106
>ref|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculus].
Length = 148
Score = 68.2 bits (165), Expect = 9e-12
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Frame = +2
Query: 80 ALSPVRGCYEAVCCLSERSLAIARGRGKGPAA----EEPLSLLDDMNHCYSRLRELVPGV 247
+L R E V LSE+S+AI+R G A ++ LL DMN CYSRL+ELVP +
Sbjct: 17 SLKAGRTAGEVVLGLSEQSVAISRCAGTRLPALLDEQQVNVLLYDMNGCYSRLKELVPTL 76
Query: 248 PRGTQLSQVEILQRVIDYILDLQV 319
P+ ++S+VEILQ VIDYI DLQ+
Sbjct: 77 PQNRKVSKVEILQHVIDYIRDLQL 100
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,974,361
Number of extensions: 900580
Number of successful extensions: 4313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4245
Number of HSP's successfully gapped: 4
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230531.1| inhibitor of DNA binding 3, dominant negativ... 204 6e-53
Alignment gi|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scro... 79 3e-15
Alignment gi|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-... 75 4e-14
Alignment gi|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scro... 69 4e-12
Alignment gi|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-... 52 6e-07
>ref|NP_001230531.1| inhibitor of DNA binding 3, dominant negative helix-loop-helix
protein [Sus scrofa].
Length = 119
Score = 204 bits (519), Expect = 6e-53
Identities = 104/119 (87%), Positives = 104/119 (87%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR
Sbjct: 1 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 60
Query: 254 GTQLSQVEILQRVIDYILDLQVVXXXXXXXXXXXXXXXIQTAELAPELVISNDQTTFCH 430
GTQLSQVEILQRVIDYILDLQVV IQTAELAPELVISNDQTTFCH
Sbjct: 61 GTQLSQVEILQRVIDYILDLQVVLAEPAPGPPDGPHLPIQTAELAPELVISNDQTTFCH 119
>ref|NP_001033054.1| DNA-binding protein inhibitor ID-2 [Sus scrofa].
Length = 134
Score = 79.3 bits (194), Expect = 3e-15
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPR 253
MKA SPVR + LS+ SL I+R + ++P+SLL +MN CYS+L+ELVP +P+
Sbjct: 1 MKAFSPVRSVRKN--SLSDHSLGISRSK---TPVDDPMSLLYNMNDCYSKLKELVPSIPQ 55
Query: 254 GTQLSQVEILQRVIDYILDLQV 319
++S++EILQ VIDYILDLQ+
Sbjct: 56 NKKVSKMEILQHVIDYILDLQI 77
>ref|XP_003134425.2| PREDICTED: DNA-binding protein inhibitor ID-1-like [Sus scrofa].
Length = 154
Score = 75.5 bits (184), Expect = 4e-14
Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Frame = +2
Query: 74 MKALSPVRGCYEAVCCLSERSLAIARGRGKGPAAEEPLSL--------LDDMNHCYSRLR 229
+KA G E V CLSE+S+AI+R G GP A P L L DMN CYSRL+
Sbjct: 18 LKAGKTAGGAGEVVRCLSEQSVAISRCAG-GPGARLPPLLDEQQVNVLLYDMNGCYSRLK 76
Query: 230 ELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
ELVP +P+ ++S+VEILQ VIDYI DL++
Sbjct: 77 ELVPTLPQNRKVSRVEILQHVIDYIWDLEL 106
>ref|NP_001116602.1| DNA-binding protein inhibitor ID-4 [Sus scrofa].
Length = 161
Score = 68.9 bits (167), Expect = 4e-12
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 24/106 (22%)
Frame = +2
Query: 74 MKALSPVR--------GCYE---AVCCLSER------------SLAIARGRGKGPAAEEP 184
MKA+SPVR GC A+ CL+E + A AR + AA+EP
Sbjct: 1 MKAVSPVRPSGRKAPSGCGGGELALRCLAEHGHSLGGSAAAAAAAAAARCKAAEAAADEP 60
Query: 185 -LSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 319
L L DMN CYSRLR LVP +P ++S+VEIL VIDYILDLQ+
Sbjct: 61 ALCLQCDMNDCYSRLRRLVPTIPPNKKVSKVEILPHVIDYILDLQL 106
>ref|XP_003361826.1| PREDICTED: DNA-binding protein inhibitor ID-1-like, partial [Sus
scrofa].
Length = 103
Score = 51.6 bits (122), Expect = 6e-07
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +2
Query: 98 GCYEAVCCLSERSLAIARGRGKGPAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVE 277
G E V CLSE+S+AI+R SRL+ELVP +P+ ++S+VE
Sbjct: 1 GAGEVVRCLSEQSVAISRCAD-------------------SRLKELVPTLPQNRKVSRVE 41
Query: 278 ILQRVIDYILDLQV 319
ILQ VIDYI DL++
Sbjct: 42 ILQHVIDYIWDLEL 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,549,582
Number of extensions: 773766
Number of successful extensions: 3941
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3850
Number of HSP's successfully gapped: 5
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002004
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896386.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 775 0.0
Sscrofa_Chr03 64 2e-07
Sscrofa_Chr07 58 9e-06
>gb|GL896386.1| Sus scrofa unplaced genomic scaffold chrU_scaffold731
Length = 41277
Score = 775 bits (391), Expect = 0.0
Identities = 401/403 (99%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 532 ccccaactttgtcgtgcccacttgacttccccaaatccctgcctcgaggctggacctgcg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12135 ccccaactttgtcgtgcccacttgacttccccaaatccctgcctcgaggctggacctgcg 12076
Query: 592 cccgggagcgaaggactgtgaacttgggtggcctaaaaagccagagctagctctggcacc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12075 cccgggagcgaaggactgtgaacttgggtggcctaaaaagccagagctagctctggcacc 12016
Query: 652 agctgggcggcctcccgcagcctccaccccacccccaagttttaaagactgtctttcagt 711
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12015 agctgggcggcctcccgcagcctccaccccacccccaagttttaaagactctctttcagt 11956
Query: 712 gtgtggaggtgtaggggggtggtggctacactccaaactctgccaaggcagcggtagagc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11955 gtgtggaggtgtaggggggtggtggctacactccaaactctgccaaggcagcggtagagc 11896
Query: 772 tggtcttctggtctcggagaaaggctctgttgccctgattatgaactctataatagagta 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11895 tggtcttctggtctcggagaaaggctctgttgccctgattatgaactctataatagagta 11836
Query: 832 tttagcttttgtaccttttttgcaggaaggtgactttctgtaaccatgcgatgtatatta 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11835 tttagcttttgtaccttttttgcaggaaggtgactttctgtaaccatgcgatgtatatta 11776
Query: 892 aactttttat-aaagttaacattttgcataataaacggttttt 933
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11775 aactttttataaaagttaacattttgcataataaacggttttt 11733
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 3 gcattgcaagctgtttaaggggttctttgggttttttcttcttttctgtacttccagtct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13674 gcattgcaagctgtttaaggggttctttgggttttttcttcttttctgtacttccagtct 13615
Query: 63 cattcctcagtatgaaggcgctgagccctgtccgcggctgctacgaggcggtgtgctgcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13614 cattcctcagtatgaaggcgctgagccctgtccgcggctgctacgaggcggtgtgctgcc 13555
Query: 123 tatcggaacgcag 135
|||||||||||||
Sbjct: 13554 tatcggaacgcag 13542
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 189 gcctgcttgatgacatgaaccactgctactcgcgtctccgggaactggtacccggagtcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13441 gcctgcttgatgacatgaaccactgctactcgcgtctccgggaactggtacccggagtcc 13382
Query: 249 cgcgaggcactcagcttagccaggtggaaatcctg 283
|||||||||||||||||||||||||||||||||||
Sbjct: 13381 cgcgaggcactcagcttagccaggtggaaatcctg 13347
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 371 cagacagccgagctcgctccggaacttgtgatctccaatgaccaaacgaccttctgccac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13011 cagacagccgagctcgctccggaacttgtgatctccaatgaccaaacgaccttctgccac 12952
Query: 431 tgacctggcgg 441
|||||||||||
Sbjct: 12951 tgacctggcgg 12941
Score = 71.9 bits (36), Expect = 6e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 338 cccggacccccagacggcccgcatcttcccatccag 373
||||||||||||||||||||||||||||||||||||
Sbjct: 13244 cccggacccccagacggcccgcatcttcccatccag 13209
>Sscrofa_Chr03
|| Length = 144787322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 273 tggaaatcctgcagcgcgtcatcgactacatcctcgacctgcag 316
||||||||||||||| |||||||||||||||| | |||||||||
Sbjct: 135803980 tggaaatcctgcagcacgtcatcgactacatcttggacctgcag 135803937
>Sscrofa_Chr07
|| Length = 134764511
Score = 58.0 bits (29), Expect = 9e-06
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 272 gtggaaatcctgcagcgcgtcatcgactacatcctcgacctgcag 316
||||| |||||||||| ||| |||||||||||||| |||||||||
Sbjct: 16178779 gtggagatcctgcagcacgttatcgactacatcctggacctgcag 16178823
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,847,016
Number of extensions: 305
Number of successful extensions: 305
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 7
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)