Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026926.1| 60S ribosomal protein L6 [Bos taurus]. 421 e-118
Alignment gi|XP_002697717.1| PREDICTED: ribosomal protein L6-like [Bos ta... 421 e-118
Alignment gi|XP_001249971.1| PREDICTED: ribosomal protein L6-like [Bos ta... 418 e-117
Alignment gi|XP_001250790.1| PREDICTED: ribosomal protein L6-like [Bos ta... 418 e-117
Alignment gi|XP_002692990.1| PREDICTED: ribosomal protein L6-like [Bos ta... 409 e-114
>ref|NP_001026926.1| 60S ribosomal protein L6 [Bos taurus].
Length = 287
Score = 421 bits (1083), Expect = e-118
Identities = 214/247 (86%), Positives = 218/247 (88%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAS RHRGKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL SGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTD YFKKKK
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTE+EKYEI+EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI
Sbjct: 221 LRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 280
Query: 862 YPHKLVF 882
YPHK+VF
Sbjct: 281 YPHKVVF 287
>ref|XP_002697717.1| PREDICTED: ribosomal protein L6-like [Bos taurus].
Length = 287
Score = 421 bits (1083), Expect = e-118
Identities = 214/247 (86%), Positives = 218/247 (88%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAS RHRGKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL SGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTD YFKKKK
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTE+EKYEI+EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI
Sbjct: 221 LRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 280
Query: 862 YPHKLVF 882
YPHK+VF
Sbjct: 281 YPHKVVF 287
>ref|XP_001249971.1| PREDICTED: ribosomal protein L6-like [Bos taurus].
Length = 287
Score = 418 bits (1075), Expect = e-117
Identities = 213/247 (86%), Positives = 217/247 (87%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAS RHRGKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL SGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTD YFKKKK
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTE+EKYEI+EQRKVDQKAVDSQILRRIKAVPQLQGYL SVFALTNGI
Sbjct: 221 LRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLCSVFALTNGI 280
Query: 862 YPHKLVF 882
YPHK+VF
Sbjct: 281 YPHKVVF 287
>ref|XP_001250790.1| PREDICTED: ribosomal protein L6-like [Bos taurus].
Length = 287
Score = 418 bits (1075), Expect = e-117
Identities = 213/247 (86%), Positives = 217/247 (87%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAS RHRGKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL SGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTD YFKKKK
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTE+EKYEI+EQRKVDQKAVDSQILRRIKAVPQLQGYL SVFALTNGI
Sbjct: 221 LRKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLCSVFALTNGI 280
Query: 862 YPHKLVF 882
YPHK+VF
Sbjct: 281 YPHKVVF 287
>ref|XP_002692990.1| PREDICTED: ribosomal protein L6-like [Bos taurus].
Length = 287
Score = 409 bits (1051), Expect = e-114
Identities = 209/247 (84%), Positives = 214/247 (86%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSEVEKKKKVRVLATVTKPVGGDKN 100
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRA HRGKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAIITPGTILIILTGCHRGKR 160
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL SGLLLVTGPLSLN+VPLRRTHQKFVIATSTKIDIS VKIPEHLTD YFKKKK
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNQVPLRRTHQKFVIATSTKIDISDVKIPEHLTDTYFKKKK 220
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
L KPRHQEGEIFDTE+EKYEI+EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI
Sbjct: 221 LLKPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 280
Query: 862 YPHKLVF 882
YPHK+VF
Sbjct: 281 YPHKVVF 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,709,713
Number of extensions: 702942
Number of successful extensions: 2353
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2342
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855430.1| PREDICTED: similar to 60S ribosomal protein L6 ... 413 e-115
Alignment gi|XP_534685.2| PREDICTED: similar to 60S ribosomal protein L6 ... 413 e-115
Alignment gi|XP_850707.1| PREDICTED: similar to 60S ribosomal protein L6 ... 413 e-115
Alignment gi|XP_848807.1| PREDICTED: similar to 60S ribosomal protein L6 ... 378 e-105
Alignment gi|XP_862098.1| PREDICTED: similar to 60S ribosomal protein L6 ... 325 5e-89
Alignment gi|XP_848892.1| PREDICTED: similar to 60S ribosomal protein L6 ... 265 4e-71
Alignment gi|XP_853452.1| PREDICTED: similar to 60S ribosomal protein L6 ... 248 8e-66
Alignment gi|XP_848587.1| PREDICTED: similar to 60S ribosomal protein L6 ... 151 8e-37
Alignment gi|XP_849566.1| PREDICTED: similar to 60S ribosomal protein L6 ... 114 2e-25
Alignment gi|XP_850712.1| PREDICTED: similar to ribosomal protein L6 [Can... 112 5e-25
>ref|XP_855430.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 288
Score = 413 bits (1061), Expect = e-115
Identities = 208/247 (84%), Positives = 218/247 (88%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSRVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVTGPL+LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLSSGLLLVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEI+EQRKVDQKAVDSQIL +IKAVPQLQGYLRSVF+LTNG+
Sbjct: 222 LRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGV 281
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 282 YPHKLVF 288
>ref|XP_534685.2| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) isoform 1 [Canis
familiaris].
Length = 288
Score = 413 bits (1061), Expect = e-115
Identities = 208/247 (84%), Positives = 218/247 (88%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSRVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVTGPL+LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLSSGLLLVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEI+EQRKVDQKAVDSQIL +IKAVPQLQGYLRSVF+LTNG+
Sbjct: 222 LRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGV 281
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 282 YPHKLVF 288
>ref|XP_850707.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) isoform 2 [Canis
familiaris].
Length = 288
Score = 413 bits (1061), Expect = e-115
Identities = 208/247 (84%), Positives = 218/247 (88%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSRVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVTGPL+LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLSSGLLLVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEI+EQRKVDQKAVDSQIL +IKAVPQLQGYLRSVF+LTNG+
Sbjct: 222 LRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFSLTNGV 281
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 282 YPHKLVF 288
>ref|XP_848807.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 308
Score = 378 bits (970), Expect = e-105
Identities = 192/247 (77%), Positives = 208/247 (84%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSR+PVLVRGIGR+S A+YSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 62 PHCSRSPVLVRGIGRFSPWAVYSRKAMYKRKYWAAKSRVEKKKKEKVLATVTKPVGGDKN 121
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGT VVKLRK PRY PTEDVP KLLSHG+KPFS+ VRKLRAS RHRGKR
Sbjct: 122 GGTPVVKLRKTPRYCPTEDVPCKLLSHGRKPFSQRVRKLRASITPGTILITLTGRHRGKR 181
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVT PL+LNRVPLRRTHQKFVIATSTKID+S VKIP+HLTDAYFKKKK
Sbjct: 182 VVFLKQLSSGLLLVTAPLALNRVPLRRTHQKFVIATSTKIDVSSVKIPKHLTDAYFKKKK 241
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
L KPRH+EGEIFDTEKEKYEI+EQRKVDQKAVDSQIL +IKAVPQLQGYL SVF+LTNG+
Sbjct: 242 LHKPRHREGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLPSVFSLTNGV 301
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 302 YPHKLVF 308
>ref|XP_862098.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) isoform 3 [Canis
familiaris].
Length = 243
Score = 325 bits (832), Expect = 5e-89
Identities = 164/202 (81%), Positives = 172/202 (85%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSRVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVTGPL+LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLSSGLLLVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEIS 747
LRKPRHQEGEIFDTEKE + +S
Sbjct: 222 LRKPRHQEGEIFDTEKEDHILS 243
>ref|XP_848892.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 216
Score = 265 bits (678), Expect = 4e-71
Identities = 141/225 (62%), Positives = 158/225 (70%)
Frame = +1
Query: 208 SRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPR 387
++KA+YKR +VLATVTKPVGGDKNGGTRVVK KMP YYPTEDVPR
Sbjct: 27 AKKAMYKRKYSAAKSRIEKKKMEKVLATVTKPVGGDKNGGTRVVKFHKMPSYYPTEDVPR 86
Query: 388 KLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKRVIFLKQLSSGLLLVTGPLSLNR 567
KLLSHGKKPFS++V+KLRA+ RHRGKRV++LKQLSSGL+LVTGPL+LN
Sbjct: 87 KLLSHGKKPFSQYVKKLRATVTPGTILIILTGRHRGKRVVYLKQLSSGLVLVTGPLALN- 145
Query: 568 VPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEIS 747
+KKKLRKPRHQEGEIFDTEKEKYEI+
Sbjct: 146 ----------------------------------QKKKLRKPRHQEGEIFDTEKEKYEIT 171
Query: 748 EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 882
EQRKVDQKAVDSQIL +IKAVPQLQGYL SVF+LTNG+YPHKLVF
Sbjct: 172 EQRKVDQKAVDSQILPKIKAVPQLQGYLHSVFSLTNGVYPHKLVF 216
>ref|XP_853452.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 206
Score = 248 bits (632), Expect = 8e-66
Identities = 144/240 (60%), Positives = 162/240 (67%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PH S+ PVLVRGIG+YSRSAMYSRKA+YKR +VLA VTKPV
Sbjct: 7 PHGSQTPVLVRGIGKYSRSAMYSRKAMYKRKYLVAKSRVEKKKKEKVLAAVTKPV----- 61
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
TR+V P P +L RHRGKR
Sbjct: 62 --TRMV--------VPECITPGTIL------------------------IILTGRHRGKR 87
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQLSSGLLLVTGPL+LNRVPL+RT+QK VI TSTKIDIS VKIP+HLTD YF KKK
Sbjct: 88 VVFLKQLSSGLLLVTGPLALNRVPLQRTYQKSVITTSTKIDISSVKIPKHLTDTYF-KKK 146
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRK RHQEGEIFDTEKEKYEISEQ +VDQK VDSQIL +IKA+PQLQGYLR+VF+LT+G+
Sbjct: 147 LRKTRHQEGEIFDTEKEKYEISEQHEVDQKTVDSQILPKIKAIPQLQGYLRTVFSLTSGV 206
>ref|XP_848587.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 132
Score = 151 bits (382), Expect = 8e-37
Identities = 90/155 (58%), Positives = 96/155 (61%)
Frame = +1
Query: 220 LYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLS 399
+YKR +V ATVTKPV GDKNGG KLRKMP
Sbjct: 1 MYKRKYSAAKSRVEKKKKEKVPATVTKPVHGDKNGG----KLRKMP-------------- 42
Query: 400 HGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLR 579
S HVRKLRAS HR KRV+FLKQL SGLLLVTGPL+LN+VPL
Sbjct: 43 ------SHHVRKLRASITRGTILIILTGCHRDKRVVFLKQLGSGLLLVTGPLALNQVPLH 96
Query: 580 RTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKL 684
RTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKKL
Sbjct: 97 RTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKL 131
>ref|XP_849566.1| PREDICTED: similar to 60S ribosomal protein L6 (TAX-responsive
enhancer element binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) [Canis familiaris].
Length = 125
Score = 114 bits (284), Expect = 2e-25
Identities = 56/75 (74%), Positives = 59/75 (78%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCS+NPVLVRGIGRYSRSAMYSRKA+YKR +V ATVTKPVGGDKN
Sbjct: 42 PHCSQNPVLVRGIGRYSRSAMYSRKAMYKRKYLAAKSRVEKKKKEKVPATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYY 366
GGTRVVKLRKMPRYY
Sbjct: 102 GGTRVVKLRKMPRYY 116
>ref|XP_850712.1| PREDICTED: similar to ribosomal protein L6 [Canis familiaris].
Length = 152
Score = 112 bits (280), Expect = 5e-25
Identities = 60/96 (62%), Positives = 70/96 (72%), Gaps = 2/96 (2%)
Frame = +1
Query: 367 PTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXX--RHRGKRVIFLKQLSSGLLL 540
P++ V RKLLSHGK PFS+HVRKL+AS HRGKR +FLKQ +S LLL
Sbjct: 54 PSKAVTRKLLSHGKNPFSQHVRKLQASISITPGTILIILTGHHRGKREVFLKQRNSSLLL 113
Query: 541 VTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPE 648
VTGPL+LNRVPLRRTHQKFVIATSTKI+ + P+
Sbjct: 114 VTGPLALNRVPLRRTHQKFVIATSTKIEYQQCENPQ 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,899,743
Number of extensions: 701232
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2563
Number of HSP's successfully gapped: 11
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019833.1| 60S ribosomal protein L6 [Homo sapiens]. 411 e-115
Alignment gi|NP_000961.2| 60S ribosomal protein L6 [Homo sapiens]. 411 e-115
>ref|NP_001019833.1| 60S ribosomal protein L6 [Homo sapiens].
Length = 288
Score = 411 bits (1057), Expect = e-115
Identities = 207/247 (83%), Positives = 217/247 (87%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL+SGLLLVTGPL LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEI+EQRK+DQKAVDSQIL +IKA+PQLQGYLRSVFALTNGI
Sbjct: 222 LRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGI 281
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 282 YPHKLVF 288
>ref|NP_000961.2| 60S ribosomal protein L6 [Homo sapiens].
Length = 288
Score = 411 bits (1057), Expect = e-115
Identities = 207/247 (83%), Positives = 217/247 (87%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKA+YKR +VLATVTKPVGGDKN
Sbjct: 42 PHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKN 101
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVRKLRAS RHRGKR
Sbjct: 102 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR 161
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
V+FLKQL+SGLLLVTGPL LNRVPLRRTHQKFVIATSTKIDIS VKIP+HLTDAYFKKKK
Sbjct: 162 VVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKK 221
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEI+EQRK+DQKAVDSQIL +IKA+PQLQGYLRSVFALTNGI
Sbjct: 222 LRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGI 281
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 282 YPHKLVF 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,367,425
Number of extensions: 692857
Number of successful extensions: 2335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035420.2| 60S ribosomal protein L6 [Mus musculus]. 391 e-109
Alignment gi|XP_890389.1| PREDICTED: 60S ribosomal protein L6-like [Mus m... 389 e-108
Alignment gi|XP_911243.1| PREDICTED: 60S ribosomal protein L6-like [Mus m... 389 e-108
Alignment gi|XP_001480277.1| PREDICTED: 60S ribosomal protein L6-like iso... 380 e-106
Alignment gi|XP_922979.1| PREDICTED: 60S ribosomal protein L6-like isofor... 380 e-106
Alignment gi|XP_483949.3| PREDICTED: 60S ribosomal protein L6-like [Mus m... 379 e-105
Alignment gi|XP_001476249.2| PREDICTED: 60S ribosomal protein L6-like [Mu... 239 3e-63
>ref|NP_035420.2| 60S ribosomal protein L6 [Mus musculus].
Length = 296
Score = 391 bits (1004), Expect = e-109
Identities = 199/248 (80%), Positives = 212/248 (85%), Gaps = 1/248 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+DIS VKIP+HLTDAYFKKK
Sbjct: 169 RVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK 228
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEKEKYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 229 QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 288
Query: 859 IYPHKLVF 882
+YPHKLVF
Sbjct: 289 MYPHKLVF 296
>ref|XP_890389.1| PREDICTED: 60S ribosomal protein L6-like [Mus musculus].
Length = 296
Score = 389 bits (1000), Expect = e-108
Identities = 198/248 (79%), Positives = 212/248 (85%), Gaps = 1/248 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKL+KMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLQKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+DIS VKIP+HLTDAYFKKK
Sbjct: 169 RVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK 228
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEKEKYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 229 QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 288
Query: 859 IYPHKLVF 882
+YPHKLVF
Sbjct: 289 MYPHKLVF 296
>ref|XP_911243.1| PREDICTED: 60S ribosomal protein L6-like [Mus musculus].
Length = 296
Score = 389 bits (1000), Expect = e-108
Identities = 198/248 (79%), Positives = 212/248 (85%), Gaps = 1/248 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKL+KMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLQKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIILTGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+DIS VKIP+HLTDAYFKKK
Sbjct: 169 RVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK 228
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEKEKYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 229 QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 288
Query: 859 IYPHKLVF 882
+YPHKLVF
Sbjct: 289 MYPHKLVF 296
>ref|XP_001480277.1| PREDICTED: 60S ribosomal protein L6-like isoform 1 [Mus musculus].
Length = 295
Score = 380 bits (977), Expect = e-106
Identities = 196/248 (79%), Positives = 210/248 (84%), Gaps = 1/248 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPRTLLIILAGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+ IS VKIP+HLTDAYF KK
Sbjct: 169 RVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVGISDVKIPKHLTDAYF-KK 227
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEK+KYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 228 QLRKPRHQEGEIFDTEKDKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 287
Query: 859 IYPHKLVF 882
+YPHKLVF
Sbjct: 288 MYPHKLVF 295
>ref|XP_922979.1| PREDICTED: 60S ribosomal protein L6-like isoform 2 [Mus musculus].
Length = 295
Score = 380 bits (977), Expect = e-106
Identities = 196/248 (79%), Positives = 210/248 (84%), Gaps = 1/248 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPRTLLIILAGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+ IS VKIP+HLTDAYF KK
Sbjct: 169 RVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVGISDVKIPKHLTDAYF-KK 227
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEK+KYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 228 QLRKPRHQEGEIFDTEKDKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 287
Query: 859 IYPHKLVF 882
+YPHKLVF
Sbjct: 288 MYPHKLVF 295
>ref|XP_483949.3| PREDICTED: 60S ribosomal protein L6-like [Mus musculus].
Length = 309
Score = 379 bits (974), Expect = e-105
Identities = 193/243 (79%), Positives = 207/243 (85%), Gaps = 1/243 (0%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXX-RVLATVTKPVGGDK 318
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR +VLATVTK VGGDK
Sbjct: 49 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 108
Query: 319 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGK 498
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFS+HVR+LR+S RHRGK
Sbjct: 109 NGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPRTLLIILAGRHRGK 168
Query: 499 RVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK 678
RV+F+KQL SGLLLVTGPL +NRVPLRRTHQKFVIATSTK+DIS VKIP+HLTDAYFKKK
Sbjct: 169 RVVFVKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK 228
Query: 679 KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 858
+LRKPRHQEGEIFDTEKEKYEI+EQRK DQKAVD QIL +IKAVPQLQGYLRS F+LTNG
Sbjct: 229 QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNG 288
Query: 859 IYP 867
+YP
Sbjct: 289 MYP 291
>ref|XP_001476249.2| PREDICTED: 60S ribosomal protein L6-like [Mus musculus].
Length = 187
Score = 239 bits (609), Expect = 3e-63
Identities = 119/151 (78%), Positives = 131/151 (86%)
Frame = +1
Query: 430 RKLRASXXXXXXXXXXXXRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIAT 609
R+LR+S RHRGKRV+FLKQL SGLLLVTGPL +NRVPLRRTHQKFVIAT
Sbjct: 37 RRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIAT 96
Query: 610 STKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQI 789
STK+DIS VKIP+HLTDAYFKKK+LRKPRHQEGEIFDTEKEKYEI+EQ+K DQKAVD QI
Sbjct: 97 STKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQQKADQKAVDLQI 156
Query: 790 LRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 882
L +IKA PQLQGYLRS F+LTNG+YPHKLVF
Sbjct: 157 LPKIKAAPQLQGYLRSQFSLTNGMYPHKLVF 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,738,090
Number of extensions: 588739
Number of successful extensions: 2015
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 7
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038007.1| 60S ribosomal protein L6 [Sus scrofa]. 428 e-120
>ref|NP_001038007.1| 60S ribosomal protein L6 [Sus scrofa].
Length = 284
Score = 428 bits (1101), Expect = e-120
Identities = 220/247 (89%), Positives = 220/247 (89%)
Frame = +1
Query: 142 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRXXXXXXXXXXXXXXXRVLATVTKPVGGDKN 321
PHCSRNPVLVRGIGRYSRSAMYSRKALYKR RVLATVTKPVGGDKN
Sbjct: 38 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97
Query: 322 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASXXXXXXXXXXXXRHRGKR 501
GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRAS RHRGKR
Sbjct: 98 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157
Query: 502 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 681
VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217
Query: 682 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 861
LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI
Sbjct: 218 LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 277
Query: 862 YPHKLVF 882
YPHKLVF
Sbjct: 278 YPHKLVF 284
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,957,828
Number of extensions: 484049
Number of successful extensions: 1495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1491
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002022
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893149.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 848 0.0
Sscrofa_Chr13 722 0.0
Sscrofa_Chr17 694 0.0
Sscrofa_Chr14 454 e-125
Sscrofa_Chr03 371 e-100
Sscrofa_Chr08 153 2e-34
gb|JH118901.1| Sus scrofa unplaced genomic scaffold ChrUScaf3292 133 2e-28
Sscrofa_Chr01 125 5e-26
Sscrofa_Chr09 82 6e-13
>gb|GL893149.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1943
Length = 31683
Score = 848 bits (428), Expect = 0.0
Identities = 726/826 (87%), Gaps = 27/826 (3%)
Strand = Plus / Plus
Query: 11 gctctttcccatcttgcaagatggcgggtgaaaaagctgagaagccaggaactaaggaga 70
|||||||||| |||| |||||||| || ||||||||| |||| |||| ||||||||||
Sbjct: 29544 gctctttcccgtcttttaagatggcaggcgaaaaagctaagaaaccagatactaaggaga 29603
Query: 71 aaaagcctgaagccaagaaggctgatgctggtggtaaagttaaaaaggctaagaaggtta 130
||||| ||||||||||||||||| ||| |||||| || ||||||||||||||||||||||
Sbjct: 29604 aaaagtctgaagccaagaaggctaatggtggtggcaaggttaaaaaggctaagaaggtta 29663
Query: 131 agaaggggaagccccactgcagccgaaaccctgtcctggtcagaggaattggcagatatt 190
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||
Sbjct: 29664 agaaggggaagccccactgctgccgaaaccctgtcctggtcagaagaattggcaggtatt 29723
Query: 191 cccgatcggctatgtattccagaaaggctttgtacaagaggaagtattcagcagctaaat 250
|| ||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 29724 cctgatcggctatgtattccagaaaggctttgtataagaagatgtattcagcagctaaat 29783
Query: 251 ccaaggttgaaaagaaaaagaaggtgagagttcttgctact-gtcac---------aaaa 300
|||||||||||||||||| ||||||||| |||||| ||||| ||||| ||||
Sbjct: 29784 ccaaggttgaaaagaaaa-gaaggtgagggttcttactactcgtcaccgccaactcaaaa 29842
Query: 301 cccgtcggtggtgacaagaatggtggtacccgagttgttaaacttcgaaaaatgcctaga 360
||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 29843 cccattggtggtgacaagaatggtggtacccaagtggttaaacttcgaaaaatgcctagc 29902
Query: 361 tattatcctactgaagatgtgccccgaaaactgttgagtcatggcaaaaaacccttcagt 420
||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct: 29903 tattatcctcctgaagatgtaccctgaaagctgttgagtcatggcaaaaaacccttcagt 29962
Query: 421 aagcacgtgagaaaactgcgggccagcatcactcctgggaccattctgatcatcctcacc 480
||||| | |||||| |||| ||| | | |||||||||||||| ||||||||| |||||||
Sbjct: 29963 aagcaagggagaaa-ctgcaggctaacgtcactcctgggaccgttctgatcaccctcacc 30021
Query: 481 gggcgccacagaggcaagagggtcattttcctgaagcagctgagcagtggcttgttactt 540
| | |||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct: 30022 agacaccacagaggcaagaaggccattttcctgaagcagctgagcagtggcttgctactg 30081
Query: 541 gtgactggacctctgtctctcaatcgagttcctctgcgtagaacacaccagaaatttgtt 600
||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 30082 gtgactggacctctgtccctcaatcgagttcctctgtgtagaacaaaccagaaatttgtt 30141
Query: 601 attgccacctccaccaaaattgatatcagtggagtaaaaattccagaacatctcactgat 660
||| ||||||||||||||| || |||||||||||||||||| |||||||| || | || |
Sbjct: 30142 atttccacctccaccaaaagtgttatcagtggagtaaaaatcccagaacaccttattggt 30201
Query: 661 gcttacttcaagaagaagaagctgcgtaagcctagacaccaggaaggagagatcttcgac 720
|||||||||||||| |||||||| | |||||| | ||||| ||||| |||||||| |||
Sbjct: 30202 gcttacttcaagaaaaagaagctacataagcccaagcaccaagaaggtgagatctttgac 30261
Query: 721 acagagaaagagaaatacgaaatttcagagcagcgcaaggttgatcagaaagctgtggac 780
|||||||||||||||| |||||| ||||| |||||||||||||||
Sbjct: 30262 gcagagaaagagaaataggaaattacagag---------------cagaaagctgtggac 30306
Query: 781 tcacaaattctgcgaagaatcaaagctgttcctcagctccagggct 826
|||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct: 30307 tcacaaattctgcgaagagtcaaggctgttccttagctccagggct 30352
>Sscrofa_Chr13
|| Length = 218635234
Score = 722 bits (364), Expect = 0.0
Identities = 497/540 (92%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 12 ctctttcccatcttgcaagatggcgggtgaaaaagctgagaagccaggaactaaggagaa 71
||||||||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||
Sbjct: 203724266 ctctttcccatcttgcaaggtggtggatgaaaaagctgagaagccaggtactaaaaagaa 203724207
Query: 72 aaagcctgaagccaagaaggctgatgctggtggtaaagttaaaaaggctaagaaggttaa 131
||| |||||||||| |||||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 203724206 aaaccctgaagccacgaaggctgatgctggtggcaaggttaaaaaggctaagcaggttaa 203724147
Query: 132 gaaggggaagccccactgcagccgaaaccctgtcctggtcagaggaattggcagatattc 191
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203724146 gaaggggaagccccattgcagccgaa-ccctgtcctggtcagaggaattggcagatattc 203724088
Query: 192 ccgatcggctatgtattccagaaaggctttgtacaagaggaagtattcagcagctaaatc 251
|| |||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203724087 ccatgtggctgtctattccagaaaggctttgtacaagaggaagtattcagcagctaaatc 203724028
Query: 252 caaggttgaaaagaaaaagaaggtgagagttcttgctactgtcacaaaacccgtcggtgg 311
|||||| |||||||||||||||||||||||||||||||| ||||||||| || | |||||
Sbjct: 203724027 caaggtcgaaaagaaaaagaaggtgagagttcttgctaccgtcacaaaatccattggtgg 203723968
Query: 312 tgacaagaatggtggtacccgagttgttaaacttcgaaaaatgcctagatattatcctac 371
||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 203723967 tgacaagaatgctggtacccgagtggttaaacttcaaaaaatgcctagatattatcctac 203723908
Query: 372 tgaagatgtgccccgaaaactgttgagtcatggcaaaaaacccttcagtaagcacgtgag 431
|||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 203723907 tgaagatgtgccttgaaagctgttgagtcacagcaaaaaacccttccgtaagcacgtgag 203723848
Query: 432 aaaactgcgggccagcatcactcctgggaccattctgatcatcctcaccgggcgccacag 491
||||||| |||| ||||||| |||||||||||||||||||||||||| |||| ||| ||
Sbjct: 203723847 aaaactgtgggctagcatcattcctgggaccattctgatcatcctcattgggcaccagag 203723788
Query: 492 aggcaagagggtcattttcctgaagcagctgagcagtggcttgttacttgtgactggacc 551
||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 203723787 aggaaagagggtgattttcctgaagcagctgagcagtggcttgctacttgtgactggacc 203723728
Score = 438 bits (221), Expect = e-120
Identities = 310/344 (90%), Gaps = 18/344 (5%)
Strand = Plus / Minus
Query: 577 cgtagaacacaccagaaatttgttattgccacctccaccaaaattgatatcagtggagta 636
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 203723728 cgtagaacacaccagaaatttgttattgtcacctccaccaaaattgatatcaatggagta 203723669
Query: 637 aaaattccagaacatctcactgatgcttacttcaagaagaagaagctgcgtaagcctaga 696
||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||
Sbjct: 203723668 aaaattccagaacctctcactgatgcttacttcaagaagaaaaagctgtgtaagcccagg 203723609
Query: 697 caccaggaaggagagatcttcgacacagagaaagagaaatacgaaatttcagagcagcgc 756
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 203723608 caccaggaaggagagatcttagacacagagaaagagaaatacgaaattacagagcagcgc 203723549
Query: 757 aaggttgatcagaaagctgtggactcacaaattctgcgaagaatcaaagctgttcctcag 816
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 203723548 aaagttgatcagaaagttgtggactcacaagttctgcgaagaatcaaagctgttccccag 203723489
Query: 817 ctccagggctacctccgctctgtgtttgccctcacaaatgggatttatcctcacaagttg 876
||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 203723488 ctccagggcta------------------cctcacaaatgggatttatcctcagaagttg 203723447
Query: 877 gtgttctaaacctcttacaaagaacacaattaaataactgatcc 920
||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 203723446 gtgttctaaacctcttacaaagaacccaataaaataactgatcc 203723403
>Sscrofa_Chr17
|| Length = 69701581
Score = 694 bits (350), Expect = 0.0
Identities = 772/909 (84%), Gaps = 9/909 (0%)
Strand = Plus / Minus
Query: 13 tctttcccatcttgcaagatggcgggtgaaaaagctgagaagccaggaactaaggagaaa 72
|||||||||| || || ||||| ||||||||||||||||||||| | || ||||||
Sbjct: 5153326 tctttcccattttccacgatggtaagtgaaaaagctgagaagccagatatgaaagagaaa 5153267
Query: 73 aagcctgaagccaagaaggctgatgctggtggtaaagttaaaaaggctaagaaggttaag 132
||||||||||||||||||||||||||| |||| | |||||||||| |||| ||||||||
Sbjct: 5153266 aagcctgaagccaagaaggctgatgctcgtggcatggttaaaaaggataaggaggttaag 5153207
Query: 133 aaggggaagccccactgcagccgaaaccctgtcctggtcagaggaattggcagatattcc 192
||||||||||| |||| ||||| |||| |||| ||||||||| |||||| ||||||||
Sbjct: 5153206 aaggggaagcctcactacagccaaaactttgtcgtggtcagagaaattggtagatattct 5153147
Query: 193 cgatcggctatgtattccagaaaggctttgtacaagaggaagtattcagcagctaaatcc 252
||| |||| ||||||||||||| || ||| ||||||| ||||||| ||||||||||||
Sbjct: 5153146 tgattggctctgtattccagaaatgccttggacaagagcaagtatttggcagctaaatcc 5153087
Query: 253 aaggttgaaaagaaaaagaaggtgagagttcttgctactgtcacaaaacccgtcggtggt 312
||| | |||||||| ||||||| |||||||||| |||||| |||||| || |||||
Sbjct: 5153086 aagtatcaaaagaaa---aaggtgacagttcttgcttctgtcataaaaccagtttgtggt 5153030
Query: 313 gacaagaatggtggtacccgagttgttaaacttcgaaaaatgcctagatattatcctact 372
||||||||||||||||||| ||| |||||| ||| ||||||||||||||| ||||||||
Sbjct: 5153029 gacaagaatggtggtacccaagtggttaaaattcacaaaatgcctagatatcatcctact 5152970
Query: 373 gaagatgtgccccgaaaactgttgagtcatggcaaaaaacccttcagtaagcacgtgag- 431
||| |||||||| | ||| ||||||| || ||||||||||||||||||| |||||
Sbjct: 5152969 gaaaatgtgccc----agctgctgagtca-agccaaaaacccttcagtaagcatgtgaga 5152915
Query: 432 aaaactgcgggccagcatcactcctgggaccattctgatcatcctcaccgggcgccacag 491
|||||||| || ||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct: 5152914 aaaactgcaggtgagcatcactcctgggaccattctgatcatcctcgctgggcgccacgg 5152855
Query: 492 aggcaagagggtcattttcctgaagcagctgagcagtggcttgttacttgtgactggacc 551
||||||||||| |||||||||||||| ||||||||| |||| | |||||| |||||| |
Sbjct: 5152854 aggcaagagggccattttcctgaagcggctgagcagcggctcgctacttgagactggtgc 5152795
Query: 552 tctgtctctcaatcgagttcctctgcgtagaacacaccagaaatttgttattgccacctc 611
|| || ||||| |||||||||||| |||||||||||||||||||| |||| |||| |
Sbjct: 5152794 cctacctttcaattgagttcctctgcagagaacacaccagaaatttgtcattgtcaccgc 5152735
Query: 612 caccaaaattgatatcagtggagtaaaaattccagaacatctcactgatgcttacttcaa 671
|||||||||||||| ||||| | ||||| |||| |||||||||||| ||||||| ||
Sbjct: 5152734 caccaaaattgataccagtgatgcgaaaatcccaggacatctcactgacacttactttaa 5152675
Query: 672 gaagaagaagctgcgtaagcctagacaccaggaaggagagatcttcgacacagagaaaga 731
| |||||||||| | |||||| || ||||||||||| |||| ||| || ||||||||
Sbjct: 5152674 gcagaagaagctacataagcccaggcaccaggaaggtgagagcttggatgtggagaaaga 5152615
Query: 732 gaaatacgaaatttcagagcagcgcaaggttgatcagaaagctgtggactcacaaattct 791
||||||| | | | |||| |||| |||||||||||||||| ||||| |||||||||||||
Sbjct: 5152614 gaaatacaagactacagaacagcacaaggttgatcagaaatctgtgaactcacaaattct 5152555
Query: 792 gcgaagaatcaaagctgttcctcagctccagggctacctccgctctgtgtttgccctcac 851
| || ||||||||||||||||||||||||| ||||||||| ||||| || ||| |||||
Sbjct: 5152554 gtgatgaatcaaagctgttcctcagctccaaggctacctctcctctgcgtctgctctcac 5152495
Query: 852 aaatgggatttatcctcacaagttggtgttctaaacctcttacaaagaacacaattaaat 911
||| ||| |||||||||||| ||||| ||| |||| |||||||||||| ||||||||
Sbjct: 5152494 aaaatggaattatcctcacaaattggtattccaaactgcttacaaagaacctaattaaat 5152435
Query: 912 aactgatcc 920
|||||||||
Sbjct: 5152434 aactgatcc 5152426
>Sscrofa_Chr14
|| Length = 153851969
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 29 agatggcgggtgaaaaagctgagaagccaggaactaaggagaaaaagcctgaagccaaga 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41806319 agatggcgggtgaaaaagctgagaagccaggaactaaggagaaaaagcctgaagccaaga 41806378
Query: 89 aggctgatgctggtggtaaagttaaaaaggctaagaaggttaagaaggggaagccccact 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41806379 aggctgatgctggtggtaaagttaaaaaggctaagaaggttaagaaggggaagccccact 41806438
Query: 149 gcagccgaaaccctgtcctggtcagaggaattggcagatattcccgatcggctatgtatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41806439 gcagccgaaaccctgtcctggtcagaggaattggcagatattcccgatcggctatgtatt 41806498
Query: 209 ccagaaaggctttgtacaagaggaagtattcagcagctaaatccaaggt 257
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41806499 ccagaaaggctttgtacaagaggaagtattcagcagctaaatccaaggt 41806547
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 731 agaaatacgaaatttcagagcagcgcaaggttgatcagaaagctgtggactcacaaattc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41812005 agaaatacgaaatttcagagcagcgcaaggttgatcagaaagctgtggactcacaaattc 41812064
Query: 791 tgcgaagaatcaaagctgttcctcagctccagggctacctccgctctgtgtttgccctca 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41812065 tgcgaagaatcaaagctgttcctcagctccagggctacctccgctctgtgtttgccctca 41812124
Query: 851 caaatgggatttatcctcacaagttggtgttctaaacctcttacaaagaacacaattaaa 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41812125 caaatgggatttatcctcacaagttggtgttctaaacctcttacaaagaacacaattaaa 41812184
Query: 911 taactgatcc 920
||||||||||
Sbjct: 41812185 taactgatcc 41812194
Score = 345 bits (174), Expect = 3e-92
Identities = 183/186 (98%)
Strand = Plus / Plus
Query: 547 ggacctctgtctctcaatcgagttcctctgcgtagaacacaccagaaatttgttattgcc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41811011 ggacctctgtctctcaatcgagttcctctgcgtagaacacaccagaaatttgttattgcc 41811070
Query: 607 acctccaccaaaattgatatcagtggagtaaaaattccagaacatctcactgatgcttac 666
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 41811071 acctccaccaaaattgatatcagtggagtaaaaattccggaacacctcactgatgcttac 41811130
Query: 667 ttcaagaagaagaagctgcgtaagcctagacaccaggaaggagagatcttcgacacagag 726
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 41811131 ttcaagaagaagaagctgcgtaagcctaggcaccaggaaggagagatcttcgacacagag 41811190
Query: 727 aaagag 732
||||||
Sbjct: 41811191 aaagag 41811196
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 354 gcctagatattatcctactgaagatgtgccccgaaaactgttgagtcatggcaaaaaacc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41808630 gcctagatattatcctactgaagatgtgccccgaaaactgttgagtcatggcaaaaaacc 41808689
Query: 414 cttcagtaagcacgtgagaaaactgcgggccagcatcactcctgggaccattctgatcat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41808690 cttcagtaagcacgtgagaaaactgcgggccagcatcactcctgggaccattctgatcat 41808749
Query: 474 cctcaccgggcgccacagaggcaag 498
|||||||||||||||||||||||||
Sbjct: 41808750 cctcaccgggcgccacagaggcaag 41808774
Score = 192 bits (97), Expect = 2e-46
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 254 aggttgaaaagaaaaagaaggtgagagttcttgctactgtcacaaaacccgtcggtggtg 313
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41806624 aggttgaaaagaaaaagaaggtgagagttcttgctactgtcacaaaacccgttggtggtg 41806683
Query: 314 acaagaatggtggtacccgagttgttaaacttcgaaaaatg 354
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41806684 acaagaatggtggtacccgagttgttaaacttcgaaaaatg 41806724
Score = 119 bits (60), Expect = 3e-24
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Minus
Query: 825 ctacctccgctctgtgtttgccctcacaaatgggatttatcctcacaagttggtgttcta 884
|||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 123785376 ctaccttcactctgtgtttgccctcacaaatggaatttatcctcacaagttggtgttcca 123785317
Query: 885 aacctcttacaaagaacacaattaaataactgatcc 920
|||||| |||||| ||| |||||||||||||||||
Sbjct: 123785316 aacctcatacaaa-aacctaattaaataactgatcc 123785282
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 497 agagggtcattttcctgaagcagctgagcagtggcttgttacttgtgactgg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41809723 agagggtcattttcctgaagcagctgagcagtggcttgttacttgtgactgg 41809774
>Sscrofa_Chr03
|| Length = 144787322
Score = 371 bits (187), Expect = e-100
Identities = 350/405 (86%), Gaps = 17/405 (4%)
Strand = Plus / Plus
Query: 499 agggtcattttcctgaagcagctgagcagtggcttgttacttgtgactggacctctgtct 558
|||||||||||||||||||||||||| | ||||| ||||||||| |||| ||||||||
Sbjct: 63399690 agggtcattttcctgaagcagctgagtggcagcttgctacttgtgagtggatctctgtct 63399749
Query: 559 ctcaatcgagttcctctgcgtagaacacaccagaaatttgttattgccacctccaccaaa 618
|||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 63399750 ctcaatagaattcttctttgtagaacacaccagaaatttgttattgccacctccaccaaa 63399809
Query: 619 attgatatcagtggagtaaaaattccagaacatctcactgatgcttacttcaagaagaag 678
||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 63399810 attgagatcagtggagtgaaaat--------------ctgatgcttacttcaagaagaag 63399855
Query: 679 aagctgcgtaagcctagacaccaggaaggagagatcttcgacacagagaaagaga--aat 736
||||||| ||| || || ||||| |||| ||||||||| ||||||||| ||||| |||
Sbjct: 63399856 aagctgcttaaacccaggaaccag-aaggtgagatcttccacacagagacagagagaaat 63399914
Query: 737 acgaaatttcagagcagcgcaaggttgatcagaaagctgtggactcacaaattctgcgaa 796
| |||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| ||
Sbjct: 63399915 atgaaattatagagcagcgcagggttggtcacaaagctgtggactcacaaattctgcaaa 63399974
Query: 797 gaatcaaagctgttcctcagctccagggctacctccgctctgtgtttgccctcacaaatg 856
||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 63399975 gaatcgaagctattcctcagctccagggctacctatactctgtgtttgccttcacaaatg 63400034
Query: 857 ggatttatcctcacaagttggtgttctaaacctcttacaaagaac 901
|||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 63400035 agatttatcctcacaagttagtgttctaaaccttttacaaagaac 63400079
>Sscrofa_Chr08
|| Length = 148491826
Score = 153 bits (77), Expect = 2e-34
Identities = 257/311 (82%), Gaps = 7/311 (2%)
Strand = Plus / Minus
Query: 76 cctgaagccaagaaggctgatgctggtggtaaagttaaaaaggct-aagaaggttaagaa 134
||||||||||||||||| | |||||| || | ||||||||||| | ||||| |||| ||
Sbjct: 3199835 cctgaagccaagaaggccggtgctgggggcacagttaaaaagggttaagaacgttaggac 3199776
Query: 135 ggggaagccccactgcagccgaaaccctgtcctggtcagaggaattggcagatattcccg 194
| |||||| | | |||||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 3199775 gaggaagctcggccacagccgaaaccctgtcctggccagaggatccagcagctattcccg 3199716
Query: 195 atcggctatgtattccagaaaggctttgtacaagagg-aagtattcagcagctaaatcca 253
| | |||| | | |||| |||||| ||||||| |||| ||| |||||||||| |||||||
Sbjct: 3199715 accagctacgcactccacaaaggccttgtacacgaggtaagcattcagcagccaaatcca 3199656
Query: 254 aggttgaaaagaaaaagaaggtgagagttcttgctactgtcacaaaacccgtcggtggtg 313
|||||||| ||||||| |||| | |||||| ||||||||||||||| || | ||||
Sbjct: 3199655 gggttgaaa-gaaaaag---gtgacaattcttgttactgtcacaaaaccagtgtgaggtg 3199600
Query: 314 acaagaatggtggtacccgagttgttaaacttcgaaaaatgcctagatattatcctactg 373
|||||||||||||||||| ||| ||||||| || | |||| |||||| |||||||||||
Sbjct: 3199599 acaagaatggtggtacccaagtggttaaacgtcacagaatg-ctagatgttatcctactg 3199541
Query: 374 aagatgtgccc 384
|||| ||||||
Sbjct: 3199540 aagaggtgccc 3199530
Score = 89.7 bits (45), Expect = 3e-15
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 499 agggtcattttcctgaagcagctgagcagtggcttgttacttgtgactggacctctgtct 558
||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
Sbjct: 3199242 agggtcattttcctgaagcagctgagcagtggcctgcgacttgtgactggacttctgccc 3199183
Query: 559 ctcaatcga 567
|||||||||
Sbjct: 3199182 ctcaatcga 3199174
Score = 69.9 bits (35), Expect = 2e-09
Identities = 113/134 (84%), Gaps = 5/134 (3%)
Strand = Plus / Minus
Query: 767 agaaagctgtggactcacaaattctgcgaagaatcaaagctgttcctcagctccagggct 826
|||| ||||||||| | |||||||||| ||| ||||||||||||| |||||||||||||
Sbjct: 3198987 agaaggctgtggac-cgcaaattctgc-aaggatcaaagctgttcatcagctccagggcc 3198930
Query: 827 acctccgctctgtgtttgccctcacaaatgggatttatcctcacaagttggtgttctaaa 886
||||| | |||||| || |||| ||||||||||| ||||| | | || |||||||||
Sbjct: 3198929 acctc--cactgtgtctg-cctcccaaatgggattcgtcctccccaagtgctgttctaaa 3198873
Query: 887 cctcttacaaagaa 900
| ||||||||||||
Sbjct: 3198872 catcttacaaagaa 3198859
>gb|JH118901.1| Sus scrofa unplaced genomic scaffold ChrUScaf3292
Length = 451395
Score = 133 bits (67), Expect = 2e-28
Identities = 332/416 (79%), Gaps = 7/416 (1%)
Strand = Plus / Plus
Query: 509 tcctgaagcagctgagcagtggcttgttacttgtgactggacctctgtct----ctcaat 564
|||||| ||||| ||||||| ||| | | |||||||||||| || |||| |||| |
Sbjct: 112139 tcctgaggcagccgagcagtagctggctctttgtgactggacttcagtctgatcctcagt 112198
Query: 565 cgagttcctctgcgtagaacacaccagaaatttgttattgccacctccaccaaaattgat 624
|||||||| |||| |||||||||||||||||| || || || ||||||| ||||| ||
Sbjct: 112199 cgagttcccctgc-tagaacacaccagaaattggtcatcgctgcctccactaaaatcgac 112257
Query: 625 atcagtggagtaaaaattccagaacatctcactgatgcttacttcaagaagaagaagctg 684
|| |||| || |||| ||| ||||| || ||| ||||||||| ||||||||||||
Sbjct: 112258 atgagtgatgtggaaatcccaaaacatttccctggggcttacttcgggaagaagaagctt 112317
Query: 685 cgt-aagcctagacaccaggaaggagagatcttcgacacagagaaagagaaatacgaaat 743
|| ||||| |||||||||||||| |||| ||||| |||||||| ||||| | | |
Sbjct: 112318 tgttaagcccagacaccaggaaggtgagaatttcgatgaagagaaagggaaatccaagct 112377
Query: 744 ttcagagcagcgcaaggttgatcagaaagctgtggactcacaaattctgc-gaagaatca 802
| | ||||| || ||||||| |||||||||||||||| ||||| || ||| |||||
Sbjct: 112378 cacggggcagctcacagttgatctgaaagctgtggactcataaatttggccgaaaaatca 112437
Query: 803 aagctgttcctcagctccagggctacctccgctctgtgtttgccctcacaaatgggattt 862
||||||||||||||||||||||| |||| | | ||||||| ||||||||||| |||
Sbjct: 112438 aagctgttcctcagctccagggccgcctctgttgtgtgttttgtctcacaaatggagttt 112497
Query: 863 atcctcacaagttggtgttctaaacctcttacaaagaacacaattaaataactgat 918
|| ||||||| ||||||||||| | ||||||||||||| ||| | |||||||||
Sbjct: 112498 atgctcacaaattggtgttctatatttcttacaaagaacctaatgagataactgat 112553
>Sscrofa_Chr01
|| Length = 315321322
Score = 125 bits (63), Expect = 5e-26
Identities = 118/134 (88%), Gaps = 3/134 (2%)
Strand = Plus / Minus
Query: 722 cagagaaagagaaatacgaaatttcagagcagcgcaaggttgatcagaaagctgtggact 781
||||||||||| ||| || ||| |||||||| || |||||||||||||||||| ||||
Sbjct: 18643446 cagagaaagagggataggagattacagagcagtgcgaggttgatcagaaagctgcggacg 18643387
Query: 782 cacaaattctgcgaagaatcaaagctgttcctcagctccagggctacctccgctctgtgt 841
|||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 18643386 -acaaattctgtgaaggatcaaagctgttcctcagctccagggctacctctgctc--tgt 18643330
Query: 842 ttgccctcacaaat 855
|||||||||||||
Sbjct: 18643329 ctgccctcacaaat 18643316
Score = 103 bits (52), Expect = 2e-19
Identities = 178/218 (81%), Gaps = 4/218 (1%)
Strand = Plus / Minus
Query: 13 tctttcccatcttgcaagatggcgggt-gaaaaagctgagaagccaggaactaaggagaa 71
|||||||||| ||||||||||| |||| ||||||||||||| | ||| | || |||||
Sbjct: 18643995 tctttcccatattgcaagatggtgggtagaaaaagctgagaggtcagaataaaaagagaa 18643936
Query: 72 aaagcctgaagccaagaaggctgatgctggtggtaaagttaaaaaggctaagaaggttaa 131
||| ||||||||| ||||| ||||| ||||| || ||| |||||| |||||| ||| |
Sbjct: 18643935 aaaacctgaagccgagaagaatgatggcggtggcaaggttcaaaagggtaagaatgttta 18643876
Query: 132 gaaggggaagccccactgcagccgaaaccctgtcctggtcagaggaattggcagatattc 191
| ||||||||| ||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 18643875 g---gggaagccctgctgtgggtgaaaccctgtcctggtcagaggaattagcagatattc 18643819
Query: 192 ccgatcggctatgtattccagaaaggctttgtacaaga 229
|| | |||||||| |||||| |||| |||| |||||
Sbjct: 18643818 ccagccagctatgtactccagagaggccttgtgcaaga 18643781
>Sscrofa_Chr09
|| Length = 153670197
Score = 81.8 bits (41), Expect = 6e-13
Identities = 150/185 (81%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 494 gcaagagggtcattttcctgaagcagctgagcagtggcttgttacttgtgactggacctc 553
|||||||||| ||||| |||| |||||||| ||||||| || ||||||||||||| |
Sbjct: 98517944 gcaagagggtagttttctagaagtagctgagccttggcttgata-ttgtgactggaccac 98517886
Query: 554 tgtctctcaatcgagttcctctgcgtagaacacaccagaaatttgttattgccacctcca 613
|| ||||| |||||||||||| |||||||||||| ||||||| || |||||| ||
Sbjct: 98517885 tgatcctcaactgagttcctctgcagagaacacaccagcaatttgtcatcaccaccttca 98517826
Query: 614 ccaaaattgatatcagtggagtaaaaattccagaacatctcactgatgcttacttcaaga 673
|| | |||||||| |||| || ||||| || || ||| ||||||||||||| | ||||
Sbjct: 98517825 tcacacttgatatcggtggtgtgaaaatctcaaaatatcccactgatgcttaccttaaga 98517766
Query: 674 agaag 678
|||||
Sbjct: 98517765 agaag 98517761
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,575,598
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 26
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)