Animal-Genome cDNA 20110601C-002038


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus].    701   0.0  
Alignment   gi|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [B...   103   5e-22
Alignment   gi|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus].     103   5e-22
Alignment   gi|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [B...   102   1e-21
Alignment   gi|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos ...   102   1e-21
Alignment   gi|NP_001178348.1| GRAM domain-containing protein 1B [Bos tauru...    96   2e-19
Alignment   gi|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like is...    96   2e-19
Alignment   gi|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like is...    87   5e-17
Alignment   gi|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isofo...    87   5e-17
Alignment   gi|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (wit...    60   9e-09

>ref|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus].
          Length = 440

 Score =  701 bits (1810), Expect = 0.0
 Identities = 361/412 (87%), Positives = 373/412 (90%), Gaps = 8/412 (1%)
 Frame = +1

Query: 259  SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 438
            SEAENGVEEKKKVCR                DQKR ISLRSKSSFDGA +A+EK+DCKTE
Sbjct: 29   SEAENGVEEKKKVCRSPGALSPTPSSEAESQDQKRTISLRSKSSFDGAPVANEKSDCKTE 88

Query: 439  SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 618
            SKND+KIERKKSSSSSQDKANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS+N
Sbjct: 89   SKNDSKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSEN 148

Query: 619  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 798
            WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208

Query: 799  LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 978
            LLKSVCGHLEN  IG+ P+PSSLENSFRADRPSSLPLDFNDEFSDLDGVVR+RRQDMEGY
Sbjct: 209  LLKSVCGHLENTGIGSGPSPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRRRRQDMEGY 268

Query: 979  SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTH----- 1143
            SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTR D LVNRVPEGKAKSLP H     
Sbjct: 269  SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRADPLVNRVPEGKAKSLPGHGKERI 328

Query: 1144 ---GQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS 1314
               GQSE +GI+ RVKS+KCPTLH ILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS
Sbjct: 329  MMPGQSETTGIIPRVKSEKCPTLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS 388

Query: 1315 TVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
             VDTHQ EQ APSGLGSQVQLNVE LCQELTANIMRLEKIQNNLQKLLENGD
Sbjct: 389  IVDTHQTEQTAPSGLGSQVQLNVEALCQELTANIMRLEKIQNNLQKLLENGD 440


>ref|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
          Length = 713

 Score =  103 bits (258), Expect = 5e-22
 Identities = 60/156 (38%), Positives = 88/156 (56%)
 Frame = +1

Query: 457 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 636
           I   K  S +  + N  F KLF  +P  E L   ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69  IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128

Query: 637 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 816
            +F  +T ISI    VT +KK KTA L+PNA+ I T  +++ F S  +RD  + L+  + 
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTENEKHFFTSFGARDRCFLLIFRL- 187

Query: 817 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 924
              +NA +  + +P  L +       S L L   DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221


>ref|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 713

 Score =  103 bits (258), Expect = 5e-22
 Identities = 60/156 (38%), Positives = 88/156 (56%)
 Frame = +1

Query: 457 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 636
           I   K  S +  + N  F KLF  +P  E L   ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69  IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128

Query: 637 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 816
            +F  +T ISI    VT +KK KTA L+PNA+ I T  +++ F S  +RD  + L+  + 
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTENEKHFFTSFGARDRCFLLIFRL- 187

Query: 817 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 924
              +NA +  + +P  L +       S L L   DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221


>ref|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
          Length = 724

 Score =  102 bits (254), Expect = 1e-21
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
 Frame = +1

Query: 379 SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 543
           S SS +   +    +     S+N  +  +K  S     S +  + N  F KLF  +P  E
Sbjct: 45  SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104

Query: 544 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 723
            L   ++CALQ+EIL QG+L++S+NWICF+S +F  +T ISI    VT +KK KTA L+P
Sbjct: 105 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164

Query: 724 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 903
           NA+ I T  +++ F S  +RD  + L+  +    +NA +  + +P  L +       S L
Sbjct: 165 NAIQICTENEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221

Query: 904 PLDFNDE 924
            L   DE
Sbjct: 222 GLTSEDE 228


>ref|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
          Length = 724

 Score =  102 bits (254), Expect = 1e-21
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
 Frame = +1

Query: 379 SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 543
           S SS +   +    +     S+N  +  +K  S     S +  + N  F KLF  +P  E
Sbjct: 45  SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104

Query: 544 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 723
            L   ++CALQ+EIL QG+L++S+NWICF+S +F  +T ISI    VT +KK KTA L+P
Sbjct: 105 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164

Query: 724 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 903
           NA+ I T  +++ F S  +RD  + L+  +    +NA +  + +P  L +       S L
Sbjct: 165 NAIQICTENEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221

Query: 904 PLDFNDE 924
            L   DE
Sbjct: 222 GLTSEDE 228


>ref|NP_001178348.1| GRAM domain-containing protein 1B [Bos taurus].
          Length = 877

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324

Query: 760 IFVSLLSRDSTYKLL 804
            F S  +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339


>ref|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like isoform 1 [Bos taurus].
          Length = 877

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324

Query: 760 IFVSLLSRDSTYKLL 804
            F S  +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339


>ref|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like isoform 2 [Bos taurus].
          Length = 892

 Score = 87.4 bits (215), Expect = 5e-17
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T +++Y
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKY 324

Query: 760 ---------------IFVSLLSRDSTYKLL 804
                           F S  +RD TY ++
Sbjct: 325 FLHRHFLPRSLSIQHFFTSFGARDRTYMMM 354


>ref|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isoform 3 [Bos taurus].
          Length = 892

 Score = 87.4 bits (215), Expect = 5e-17
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T +++Y
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKY 324

Query: 760 ---------------IFVSLLSRDSTYKLL 804
                           F S  +RD TY ++
Sbjct: 325 FLHRHFLPRSLSIQHFFTSFGARDRTYMMM 354


>ref|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (with GRAM domain) [Bos
           taurus].
          Length = 1249

 Score = 60.1 bits (144), Expect = 9e-09
 Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A + FH+LF  +P EE L   ++C+  K ++  QG +++S N +CF+S + G++ K+ I
Sbjct: 125 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 183

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 813
               +T ++K  T LL+P+ + ++T +  + F   L+ + T+KL++ +
Sbjct: 184 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 230


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 88,186,437
Number of extensions: 2396391
Number of successful extensions: 9743
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9700
Number of HSP's successfully gapped: 15
Length of query: 775
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 665
Effective length of database: 14,041,694
Effective search space: 9337726510
Effective search space used: 9337726510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Can...   714   0.0  
Alignment   gi|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Can...   140   4e-33
Alignment   gi|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Can...   102   2e-21
Alignment   gi|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isof...    96   2e-19
Alignment   gi|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isof...    96   2e-19
Alignment   gi|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris].     93   1e-18
Alignment   gi|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Can...    60   9e-09
Alignment   gi|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Can...    60   9e-09
Alignment   gi|XP_531780.2| PREDICTED: similar to TBC1 domain family member...    53   1e-06

>ref|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
          Length = 466

 Score =  714 bits (1842), Expect = 0.0
 Identities = 365/435 (83%), Positives = 389/435 (89%)
 Frame = +1

Query: 130  MVKKRLSSSSDTTWRSEVPGGPSKVGTEAPHSAPDSPGSVFLSSEAENGVEEKKKVCRXX 309
            MVKK LSSS DT +R E PG P K G EAPHS+ DSPGSVFLSSEAENGVE+KKK+C+  
Sbjct: 1    MVKKSLSSS-DTVFRFETPGSPRKTGPEAPHSSTDSPGSVFLSSEAENGVEDKKKICKSP 59

Query: 310  XXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQ 489
                          DQKR++SLRSKSSF+GASL S+KNDCKTESKN++K++RKK SSSSQ
Sbjct: 60   TAQSPSPSNEAESSDQKRLLSLRSKSSFEGASLGSDKNDCKTESKNESKMDRKKYSSSSQ 119

Query: 490  DKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISI 669
             KANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS+NWICFHSKVFGKDTKISI
Sbjct: 120  YKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISI 179

Query: 670  PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNS 849
            P FSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLEN S+GNS
Sbjct: 180  PVFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENMSVGNS 239

Query: 850  PNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFH 1029
            PNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQ+MEGYSSSGSQTPESENSRDFH
Sbjct: 240  PNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQEMEGYSSSGSQTPESENSRDFH 299

Query: 1030 VTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQ 1209
            VTESQTVLNVSKGE KP R DA VNRVPEGKAKSLP HGQSE  G++H+VKSQ   TLH 
Sbjct: 300  VTESQTVLNVSKGETKPARADAHVNRVPEGKAKSLPVHGQSETIGVLHKVKSQTRTTLHH 359

Query: 1210 ILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEV 1389
            ILIFYAIVVCALIISTFYMRYRINTLEE+LGSLTS VDTH  EQ APSGLGSQVQLNVEV
Sbjct: 360  ILIFYAIVVCALIISTFYMRYRINTLEERLGSLTSIVDTHH-EQTAPSGLGSQVQLNVEV 418

Query: 1390 LCQELTANIMRLEKI 1434
            LCQELTANI++LEK+
Sbjct: 419  LCQELTANIIKLEKV 433


>ref|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
          Length = 500

 Score =  140 bits (354), Expect = 4e-33
 Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 22/294 (7%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 672
            K N  +HKLF D+P EE + +  +CALQ+++L QG+L++S NW+CFH+ +FGKD K+ IP
Sbjct: 209  KYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIP 268

Query: 673  AFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENAS---- 837
              SV +IKK K A L+PN L I T T  +Y+FVSLLSRDS Y +L+ VC HL+ +S    
Sbjct: 269  VVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSL 328

Query: 838  ----IGNSPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSG 990
                    P   SL     E  +R   P+S  L   D   ++  + R     ++ +  S 
Sbjct: 329  SVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPD---NIPCIPRASMDSVDSFFPS- 384

Query: 991  SQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIV 1170
             + P S         +S + L    G A+     +L+        + +P       + + 
Sbjct: 385  RKPPGS--------AQSPSSLREWGGGARKGCVCSLLGWALASCPRKMPNCSPITENAVC 436

Query: 1171 HRVKSQKCPTL--------HQILIFYAIVVCALIISTFYMRYRINTLEEQLGSL 1308
               K ++            +Q+L    +++C L++S+ Y+ +RI+ LE+QL SL
Sbjct: 437  EEEKLEEESRSDAELRLWDYQLLKIIFVLICFLVMSSSYLAFRISRLEQQLCSL 490


>ref|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
          Length = 987

 Score =  102 bits (254), Expect = 2e-21
 Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
 Frame = +1

Query: 439 SKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKL 603
           S+N  +  +K  S     S +  + N  F KLF  +P  E L   ++CALQ+EIL QG+L
Sbjct: 328 SRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRL 387

Query: 604 FVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSR 783
           ++S+NWICF+S +F  +T ISI    VT +KK KTA L+PNA+ I T ++++ F S  +R
Sbjct: 388 YLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGAR 447

Query: 784 DSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 924
           D  + L+  +    +NA +  + +P  L +       S L L   DE
Sbjct: 448 DRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 491


>ref|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isoform 2 [Canis
           familiaris].
          Length = 745

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
 Frame = +1

Query: 439 SKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKL 603
           SK+  ++ +K  S     S +  + N  F KLF  +P  E L   ++CALQ++IL QG+L
Sbjct: 77  SKSHKRLSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRL 136

Query: 604 FVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSR 783
           ++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++ F S  +R
Sbjct: 137 YLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGAR 196

Query: 784 DSTYKLL 804
           D TY ++
Sbjct: 197 DRTYMMM 203


>ref|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isoform 1 [Canis
           familiaris].
          Length = 877

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324

Query: 760 IFVSLLSRDSTYKLL 804
            F S  +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339


>ref|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris].
          Length = 677

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 43/107 (40%), Positives = 68/107 (63%)
 Frame = +1

Query: 475 SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 654
           SSS+    N  + + F  +P  E L   + CALQ++IL QG+L++S+NW+CF+S +F  +
Sbjct: 74  SSSTYKDRNEEYKRQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 133

Query: 655 TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY 795
           T I I   ++T + K KTA L+PNA+ I T  +++ F S  +RD +Y
Sbjct: 134 TTICIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSY 180


>ref|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Canis familiaris].
          Length = 1266

 Score = 60.1 bits (144), Expect = 9e-09
 Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A + FH+LF  +P EE L   ++C+  K ++  QG +++S N +CF+S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 201

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 813
               +T ++K  T LL+P+ + ++T +  + F   L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248


>ref|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Canis familiaris].
          Length = 1175

 Score = 60.1 bits (144), Expect = 9e-09
 Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A + FH+LF  +P EE L   ++C+  K ++  QG +++S N +CF+S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 201

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 813
               +T ++K  T LL+P+ + ++T +  + F   L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248


>ref|XP_531780.2| PREDICTED: similar to TBC1 domain family member 8 (Vascular
            Rab-GAP/TBC-containing protein) (AD 3) [Canis
            familiaris].
          Length = 1122

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQKEILY---QGKLFVSDNWICFHSKVFGKDTKI 663
            +A   F + F  +P  E L     C+L          G++F SD +ICF SK  G    +
Sbjct: 260  RAQNEFFRAFFRLPRREKLHAVLDCSLWTPFSRCHTVGRMFTSDRYICFASKEDGC-CNV 318

Query: 664  SIPAFSVTLIKKTKTALLVPNALIIATVTDR-YIFVSLLSRDSTYKLLKSVCGHLENASI 840
             +P   V  I+K +   L+PN +I++  +   + F+ L  RD+   L++S+   L+    
Sbjct: 319  ILPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRDN---LVESLLMRLKQV-- 373

Query: 841  GNSPNPSSLENSFRADRPS----SLPLDFNDEFSDLDGVVRQRRQDMEGYSS-------- 984
             ++ +P   + S   D  S    S  L  + +F DL+ V  Q  ++ E   +        
Sbjct: 374  -HANHPVHYDTSRDEDMTSPVFHSTSLCSDHKFGDLEMVSSQNSEESEKEKNPQLHPEAL 432

Query: 985  ------SGSQTPESENSRD 1023
                  SGSQ+P+S  SR+
Sbjct: 433  IPVLQQSGSQSPDSRMSRE 451


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 91,973,747
Number of extensions: 2444322
Number of successful extensions: 10296
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10184
Number of HSP's successfully gapped: 9
Length of query: 775
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 664
Effective length of database: 15,174,208
Effective search space: 10075674112
Effective search space used: 10075674112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [...   693   0.0  
Alignment   gi|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [...   689   0.0  
Alignment   gi|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Hom...   689   0.0  
Alignment   gi|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [...   655   0.0  
Alignment   gi|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [...   592   e-169
Alignment   gi|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapie...   146   9e-35
Alignment   gi|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 ...   105   1e-22
Alignment   gi|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Ho...   104   4e-22
Alignment   gi|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Ho...    98   3e-20
Alignment   gi|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens].     96   2e-19

>ref|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [Homo sapiens].
          Length = 416

 Score =  693 bits (1789), Expect = 0.0
 Identities = 356/407 (87%), Positives = 365/407 (89%)
 Frame = +1

Query: 250  FLSSEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDC 429
            F SSEAENGVEEKKK CR                DQK+IISL SKSSFDGASLAS+KNDC
Sbjct: 10   FFSSEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDC 69

Query: 430  KTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFV 609
            KTESKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFV
Sbjct: 70   KTESKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFV 129

Query: 610  SDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDS 789
            S+NWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDS
Sbjct: 130  SENWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDS 189

Query: 790  TYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDM 969
            TYKLLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDM
Sbjct: 190  TYKLLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDM 249

Query: 970  EGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQ 1149
            EGYSSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP  G 
Sbjct: 250  EGYSSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGL 309

Query: 1150 SELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTH 1329
            SE  GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH
Sbjct: 310  SETVGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTH 369

Query: 1330 QPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
              EQ APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 370  NTEQAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 416


>ref|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [Homo sapiens].
          Length = 447

 Score =  689 bits (1779), Expect = 0.0
 Identities = 354/404 (87%), Positives = 363/404 (89%)
 Frame = +1

Query: 259  SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 438
            SEAENGVEEKKK CR                DQK+IISL SKSSFDGASLAS+KNDCKTE
Sbjct: 44   SEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCKTE 103

Query: 439  SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 618
            SKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+N
Sbjct: 104  SKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 163

Query: 619  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 798
            WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 164  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 223

Query: 799  LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 978
            LLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGY
Sbjct: 224  LLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGY 283

Query: 979  SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1158
            SSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP  G SE 
Sbjct: 284  SSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSET 343

Query: 1159 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPE 1338
             GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH  E
Sbjct: 344  VGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTE 403

Query: 1339 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
            Q APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 404  QAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 447


>ref|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Homo sapiens].
          Length = 432

 Score =  689 bits (1779), Expect = 0.0
 Identities = 354/404 (87%), Positives = 363/404 (89%)
 Frame = +1

Query: 259  SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 438
            SEAENGVEEKKK CR                DQK+IISL SKSSFDGASLAS+KNDCKTE
Sbjct: 29   SEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCKTE 88

Query: 439  SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 618
            SKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+N
Sbjct: 89   SKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 148

Query: 619  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 798
            WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208

Query: 799  LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 978
            LLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGY
Sbjct: 209  LLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGY 268

Query: 979  SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1158
            SSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP  G SE 
Sbjct: 269  SSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSET 328

Query: 1159 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPE 1338
             GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH  E
Sbjct: 329  VGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTE 388

Query: 1339 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
            Q APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 389  QAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 432


>ref|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [Homo sapiens].
          Length = 440

 Score =  655 bits (1691), Expect(2) = 0.0
 Identities = 333/364 (91%), Positives = 341/364 (93%)
 Frame = +1

Query: 379  SKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQS 558
            SKSSFDGASLAS+KNDCKTESKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQS
Sbjct: 77   SKSSFDGASLASDKNDCKTESKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQS 136

Query: 559  FTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 738
            FTCALQKEILYQGKLFVS+NWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII
Sbjct: 137  FTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 196

Query: 739  ATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFN 918
            ATVTDRYIFVSLLSRDSTYKLLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFN
Sbjct: 197  ATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFN 256

Query: 919  DEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDAL 1098
            DEFSDLDGVV+QRRQDMEGYSSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA 
Sbjct: 257  DEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAH 316

Query: 1099 VNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRI 1278
            VNRVPEGKAKSLP  G SE  GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRI
Sbjct: 317  VNRVPEGKAKSLPVQGLSETVGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRI 376

Query: 1279 NTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLL 1458
            NTLEEQLG LTS VDTH  EQ APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLL
Sbjct: 377  NTLEEQLGLLTSIVDTHNTEQAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLL 436

Query: 1459 ENGD 1470
            ENGD
Sbjct: 437  ENGD 440



 Score = 51.2 bits (121), Expect(2) = 0.0
 Identities = 25/36 (69%), Positives = 28/36 (77%)
 Frame = +2

Query: 260 QRLRTVWRRKRRSAGRQQPCPLPRPARPSLQTRRES 367
           QRLR VWRRKR+ AGRQQP PLP   R + QTRR+S
Sbjct: 23  QRLRMVWRRKRKPAGRQQPNPLPHLWRRTPQTRRKS 58


>ref|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [Homo sapiens].
          Length = 328

 Score =  592 bits (1527), Expect = e-169
 Identities = 299/326 (91%), Positives = 306/326 (93%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 672
            KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+NWICFHSKVFGKDTKISIP
Sbjct: 3    KANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIP 62

Query: 673  AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSP 852
            AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLEN S+GNSP
Sbjct: 63   AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSP 122

Query: 853  NPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHV 1032
            NPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGYSSSGSQTPESENSRDFH 
Sbjct: 123  NPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHA 182

Query: 1033 TESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQI 1212
            TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP  G SE  GI+H+VKSQKCP LH I
Sbjct: 183  TESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSETVGILHKVKSQKCPMLHHI 242

Query: 1213 LIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPEQPAPSGLGSQVQLNVEVL 1392
            LIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH  EQ APSGL SQVQ NVEVL
Sbjct: 243  LIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTEQAAPSGLRSQVQFNVEVL 302

Query: 1393 CQELTANIMRLEKIQNNLQKLLENGD 1470
            CQELTANI++LEKIQNNLQKLLENGD
Sbjct: 303  CQELTANIVKLEKIQNNLQKLLENGD 328


>ref|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapiens].
          Length = 354

 Score =  146 bits (368), Expect = 9e-35
 Identities = 102/286 (35%), Positives = 146/286 (51%), Gaps = 12/286 (4%)
 Frame = +1

Query: 490  DKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISI 669
            +K N  +HKLF DVP EE + +  +CALQ++ L QG+L++S NW+CFH+ +FGKD K+ I
Sbjct: 68   NKYNQQYHKLFKDVPLEEVVLKVCSCALQRDFLLQGRLYISPNWLCFHASLFGKDIKVVI 127

Query: 670  PAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENASIGN 846
            P  SV +IKK K A L+PN L I T T  +YIFVSLLSRDS Y LL+ VC HL+ +S  +
Sbjct: 128  PVVSVQMIKKHKMARLLPNGLAITTNTSQKYIFVSLLSRDSVYDLLRRVCTHLQPSSKKS 187

Query: 847  ------SPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGS 993
                  S  P SL     E  +R   PSS  L   D        +     D         
Sbjct: 188  LSVREFSGEPESLEVLIPEMKWRKVCPSSRSLSLPDNIP----CIPPSSVDSTDSFFPSR 243

Query: 994  QTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVH 1173
            + P SE SR    +E+            P     + N  P  K      + + EL     
Sbjct: 244  KPPMSEKSRAQVASENGGRWAWPMPGWGPACPKKMPNCSPTAKN---AVYEEDELEEEPR 300

Query: 1174 RVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLT 1311
                 +      + +F+ +++C L++S+ Y+ +RI+ LE+QL SL+
Sbjct: 301  STGELRLWDYRLLKVFF-VLICFLVMSSSYLAFRISRLEQQLCSLS 345


>ref|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 [Homo sapiens].
          Length = 713

 Score =  105 bits (263), Expect = 1e-22
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 12/205 (5%)
 Frame = +1

Query: 457  IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 636
            I   K  S +  + N  F KLF  +P  E L   ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69   IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128

Query: 637  KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 816
             +F  +T ISI    VT +KK KTA L+PNA+ I T ++++ F S  +RD  + L+  + 
Sbjct: 129  NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL- 187

Query: 817  GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEF----SDLDGVVRQRRQD----ME 972
               +NA +  + +P  L +       S L L   DE       L+G+   +       + 
Sbjct: 188  --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIALS 245

Query: 973  GYSSSG----SQTPESENSRDFHVT 1035
              +SSG    SQ P    SR  HVT
Sbjct: 246  DITSSGAADRSQEPSPVGSRRGHVT 270


>ref|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Homo sapiens].
          Length = 724

 Score =  104 bits (259), Expect = 4e-22
 Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 17/236 (7%)
 Frame = +1

Query: 379  SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 543
            S SS +   +    +     S+N  +  +K  S     S +  + N  F KLF  +P  E
Sbjct: 45   SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104

Query: 544  PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 723
             L   ++CALQ+EIL QG+L++S+NWICF+S +F  +T ISI    VT +KK KTA L+P
Sbjct: 105  RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164

Query: 724  NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 903
            NA+ I T ++++ F S  +RD  + L+  +    +NA +  + +P  L +       S L
Sbjct: 165  NAIQICTESEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221

Query: 904  PLDFNDEF----SDLDGVVRQRRQD----MEGYSSSG----SQTPESENSRDFHVT 1035
             L   DE       L+G+   +       +   +SSG    SQ P    SR  HVT
Sbjct: 222  GLTSEDEDYVSPLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPSPVGSRRGHVT 277


>ref|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Homo sapiens].
          Length = 662

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 48/281 (17%)
 Frame = +1

Query: 475  SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 654
            SSS+    N  + + F  +P  E L   + CALQ++IL QG+L++S+NW+CF+S +F  +
Sbjct: 60   SSSTYKDRNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 119

Query: 655  TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY------------- 795
            T ISI   ++T + K KTA L+PNA+ I T ++++ F S  +RD +Y             
Sbjct: 120  TTISIALKNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLD 179

Query: 796  ---------KLLKSVCG--------HLENASIG------NSPNPSSLENSFRADRPSSLP 906
                     +LL+   G         +EN S+        SP  SSL++S   D   S  
Sbjct: 180  KSLTRQEFWQLLQQNYGTELGLNAEEMENLSLSIEDVQPRSPGRSSLDDSGERDEKLSKS 239

Query: 907  LDFNDEFSDLDGVVRQRRQDMEGYSSSGS-QTPESENSRDFHVTESQTV----------- 1050
            + F  E   +  V     +  +G SS G     ES+N +    +   T+           
Sbjct: 240  ISFTSE--SISRV--SETESFDGNSSKGGLGKEESQNEKQTKKSLLPTLEKKLTRVPSKS 295

Query: 1051 LNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVH 1173
            L+++K E       +  + V E        HG+  ++ I H
Sbjct: 296  LDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFH 336


>ref|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens].
          Length = 738

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 62  QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 121

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++
Sbjct: 122 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 181

Query: 760 IFVSLLSRDSTYKLL 804
            F S  +RD TY ++
Sbjct: 182 FFTSFGARDRTYMMM 196


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 90,328,689
Number of extensions: 2409388
Number of successful extensions: 9594
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9565
Number of HSP's successfully gapped: 13
Length of query: 775
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 665
Effective length of database: 14,671,124
Effective search space: 9756297460
Effective search space used: 9756297460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus].     662   0.0  
Alignment   gi|NP_001028670.1| GRAM domain-containing protein 2 [Mus muscul...   134   3e-31
Alignment   gi|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus].    102   2e-21
Alignment   gi|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus].     96   2e-19
Alignment   gi|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus m...    58   3e-08
Alignment   gi|NP_061245.3| TBC1 domain family member 8 [Mus musculus].           53   1e-06
Alignment   gi|NP_084021.2| TBC1 domain family member 9B [Mus musculus].          52   2e-06

>ref|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus].
          Length = 432

 Score =  662 bits (1707), Expect = 0.0
 Identities = 332/404 (82%), Positives = 361/404 (89%)
 Frame = +1

Query: 259  SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 438
            SEAENG E++++V +                DQKR + L SKSSFDG+SL S+KNDCKTE
Sbjct: 29   SEAENGAEDRRRVSKSPTAQSPTSSVEAESPDQKRSLGLWSKSSFDGSSLLSDKNDCKTE 88

Query: 439  SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 618
            SK D+K ERKKSSSSSQ KANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS+N
Sbjct: 89   SKTDSKTERKKSSSSSQYKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSEN 148

Query: 619  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 798
            WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149  WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208

Query: 799  LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 978
            L+KSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQD+EGY
Sbjct: 209  LIKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDLEGY 268

Query: 979  SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1158
            SSSGSQTPESENSRDFHVTESQTVLNV+KGE KP RTDA  +R P+GKAK LP HGQSE 
Sbjct: 269  SSSGSQTPESENSRDFHVTESQTVLNVTKGETKPPRTDAHGSRAPDGKAKILPAHGQSET 328

Query: 1159 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPE 1338
             GI+H+++S+KCPTLH ILI YAI+VCALIISTFYMRYRINTLEE+LG+LTS +D H  E
Sbjct: 329  IGILHKMESRKCPTLHHILIVYAIIVCALIISTFYMRYRINTLEERLGTLTSIMDPHSTE 388

Query: 1339 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
            Q APSGLGSQ+QLNVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 389  QTAPSGLGSQMQLNVEVLCQELTANIVKLEKIQNNLQKLLENGD 432


>ref|NP_001028670.1| GRAM domain-containing protein 2 [Mus musculus].
          Length = 312

 Score =  134 bits (337), Expect = 3e-31
 Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
 Frame = +1

Query: 433 TESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVS 612
           +E      I++     + + K N  +HKLF D+P EE + +  +CALQ+++L  G+L++S
Sbjct: 43  SEGSKGEDIKKYSREGTLRSKYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLHGRLYIS 102

Query: 613 DNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDS 789
            NW+CFH+ +FGKD K+ IP  SV LIKK K A L+PN L I T T  +Y+FVSLLSRDS
Sbjct: 103 PNWLCFHASLFGKDIKVVIPVVSVQLIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDS 162

Query: 790 TYKLLKSVCGHLENAS 837
            Y +L+ VC HL+ +S
Sbjct: 163 VYDMLRRVCTHLQPSS 178


>ref|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus].
          Length = 722

 Score =  102 bits (253), Expect = 2e-21
 Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
 Frame = +1

Query: 379 SKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQ-----DKANMHFHKLFLDVPTEE 543
           S SS + + ++   +     S+N  +  +K  S  S       + N  F KLF  +P  E
Sbjct: 47  SDSSSEKSGVSGTLSTQSLGSRNFIRNSKKMQSWYSMLCPTYKQRNEDFRKLFSKLPEAE 106

Query: 544 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 723
            L   ++CALQ+EIL QG+L++S+NWICF+S +F  +T ISI    VT +KK KTA L+P
Sbjct: 107 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 166

Query: 724 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 903
           NA+ I T ++++ F S  +RD  + L+  +    +NA +  + +P  L +       S L
Sbjct: 167 NAIQICTESEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 223

Query: 904 PLDFNDE 924
            L   DE
Sbjct: 224 GLTSEDE 230


>ref|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus].
          Length = 878

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
 Frame = +1

Query: 418 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 579
           +  C ++S        KKS S       +  + N  F KLF  +P  E L   ++CALQ+
Sbjct: 206 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 265

Query: 580 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 759
           +IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ + T ++++
Sbjct: 266 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 325

Query: 760 IFVSLLSRDSTYKLL 804
            F S  +RD TY ++
Sbjct: 326 FFTSFGARDRTYMMM 340


>ref|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus musculus].
          Length = 1264

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A + FH+LF  +P EE L   ++C+  K  +  QG +++S N +CF S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGRVPRQGWMYLSINHLCFSSFLMGREAKLVI 201

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 813
               +T ++K  T LL+P+ + ++T +  + F   L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDMIKVSTRSSEHFFSVFLNINETFKLMEQL 248


>ref|NP_061245.3| TBC1 domain family member 8 [Mus musculus].
          Length = 1134

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
 Frame = +1

Query: 406  LASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEI 585
            L +E  D   + +  ++I ++   + +Q++    F + F  +P EE L     C+L    
Sbjct: 256  LDNEVFDLDPDLQEPSQITKRDLEARAQNE----FFRAFFRLPREEKLHAVADCSLWTPF 311

Query: 586  LY---QGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDR 756
                  G++F SD++ICF S+  G    + +P   V  I+K +   L+PN +I++  +  
Sbjct: 312  SRCHTAGRIFSSDSYICFASREDGC-CNVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKM 370

Query: 757  -YIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFN----- 918
             + F+ L  R++  +      G L      ++ +P   E S   D  +S P+ ++     
Sbjct: 371  AFQFIELKDRENLVE------GLLLRLKQVHANHPVHYETSPSDDDMAS-PVFYSASICT 423

Query: 919  DEFSDLDGVVRQRRQDMEG-------------YSSSGSQTPESENSRD 1023
            D+F DL+ V  Q  ++ E              +  SGSQ+P+S  SR+
Sbjct: 424  DKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSRE 471


>ref|NP_084021.2| TBC1 domain family member 9B [Mus musculus].
          Length = 1246

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQ---KEILYQGKLFVSDNWICFHSKVFGKDTKI 663
            +A    ++    +P +E L     C L     ++   G++F+S+N+ICF SK      ++
Sbjct: 284  RAKNECYRATFRLPKDERLDGHTGCTLWTPFNKLHIPGQMFISNNYICFASKE-EDACRL 342

Query: 664  SIPAFSVTLIKKTKTALLVPNALIIATVTD-RYIFVSLLSRDSTYK----LLKSVCGHLE 828
             IP   VT+++K  ++ ++P+ L I+T +   ++F +L  RD   +     L+       
Sbjct: 343  IIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRDFLVQRISDFLQKTPSKQT 402

Query: 829  NASIG------NSPNPSSLENSFRADRP---SSLPLDFNDEFSDLD------GVVR--QR 957
             +SIG      + P P SL     A  P    S PL     FS  +      G+++  Q+
Sbjct: 403  GSSIGGTKASVSDPAPESLPTPQEASEPPASPSSPLSSPPSFSTQEIPTTSQGLLKVFQK 462

Query: 958  RQDMEGYSSSGSQTPESENSRDFHVTE 1038
               ME   + G++    E S + H  E
Sbjct: 463  NSPMEDLGAKGAKEKMKEESWNIHFFE 489


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 76,730,194
Number of extensions: 2036097
Number of successful extensions: 7945
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7923
Number of HSP's successfully gapped: 7
Length of query: 775
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 666
Effective length of database: 12,343,635
Effective search space: 8220860910
Effective search space used: 8220860910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-...   761   0.0  
Alignment   gi|XP_003123937.2| PREDICTED: GRAM domain-containing protein 3-...   220   2e-57
Alignment   gi|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-...   142   6e-34
Alignment   gi|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa].       141   2e-33
Alignment   gi|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A...   104   2e-22
Alignment   gi|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C...    96   9e-20
Alignment   gi|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B...    94   3e-19
Alignment   gi|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain ...    60   5e-09
Alignment   gi|XP_003124934.2| PREDICTED: TBC1 domain family member 8 [Sus ...    52   1e-06
Alignment   gi|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isof...    50   5e-06

>ref|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-like [Sus scrofa].
          Length = 415

 Score =  761 bits (1965), Expect = 0.0
 Identities = 390/408 (95%), Positives = 391/408 (95%)
 Frame = +1

Query: 247  VFLSSEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKND 426
            +F SSEAENGVEEKKKVCR                DQKRIISLRSKSSFDGASLASEKND
Sbjct: 8    LFSSSEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKND 67

Query: 427  CKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLF 606
            CKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLF
Sbjct: 68   CKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLF 127

Query: 607  VSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRD 786
            VSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRD
Sbjct: 128  VSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRD 187

Query: 787  STYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQD 966
            STYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQD
Sbjct: 188  STYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQD 247

Query: 967  MEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHG 1146
            MEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHG
Sbjct: 248  MEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHG 307

Query: 1147 QSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDT 1326
            QSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDT
Sbjct: 308  QSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDT 367

Query: 1327 HQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1470
            HQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD
Sbjct: 368  HQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 415


>ref|XP_003123937.2| PREDICTED: GRAM domain-containing protein 3-like [Sus scrofa].
          Length = 384

 Score =  220 bits (561), Expect = 2e-57
 Identities = 112/116 (96%), Positives = 113/116 (97%), Gaps = 3/116 (2%)
 Frame = +1

Query: 895  SSLPL---DFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK 1065
            SSLP+   DFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK
Sbjct: 269  SSLPISPQDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK 328

Query: 1066 GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV 1233
            GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV
Sbjct: 329  GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV 384



 Score =  117 bits (292), Expect = 4e-26
 Identities = 63/81 (77%), Positives = 64/81 (79%)
 Frame = +1

Query: 247 VFLSSEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKND 426
           +F SSEAENGVEEKKKVCR                DQKRIISLRSKSSFDGASLASEKND
Sbjct: 8   LFSSSEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKND 67

Query: 427 CKTESKNDAKIERKKSSSSSQ 489
           CKTESKNDAKIERKKSSSSSQ
Sbjct: 68  CKTESKNDAKIERKKSSSSSQ 88


>ref|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-containing protein 2 [Sus
            scrofa].
          Length = 349

 Score =  142 bits (359), Expect = 6e-34
 Identities = 100/297 (33%), Positives = 150/297 (50%), Gaps = 24/297 (8%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 672
            K N  +HKLF D+P EE + +  +CALQ+++L QG+L++S NW+CFH+ +FGKD K+ IP
Sbjct: 65   KYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIP 124

Query: 673  AFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENAS---- 837
              SV +IKK K A L+PN L I T T  +Y+FVSLLSRDS Y +L+ VC HL+ +S    
Sbjct: 125  VVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSL 184

Query: 838  ----IGNSPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSG 990
                    P   SL     E  +R   P+S  L   D   ++  + R      +G   S 
Sbjct: 185  SVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPD---NIPCIPRASVDSADGLFPS- 240

Query: 991  SQTPESENSRDFHVTESQTVLNVSKG--------EAKPTRTDALVNRVPEGKAKSLPTHG 1146
                +   S +F       V + S+G           P       N V E K        
Sbjct: 241  ---RKPPGSGEFSGKPKAQVASESEGGWGPAFCPSKSPHXCPVAENAVCEDK-------- 289

Query: 1147 QSELSGIVHRVKSQKCPTL--HQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLT 1311
                  +    +S +   L  +++L  + +++C L++S+ Y+ +RI+ LE+QL SLT
Sbjct: 290  ------LEEEARSDRELRLWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSLT 340


>ref|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa].
          Length = 365

 Score =  141 bits (355), Expect = 2e-33
 Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 1/292 (0%)
 Frame = +1

Query: 436  ESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSD 615
            E+  D  I++     +   K N  +HKLF D+P EE + +  +CALQ+++L QG+L++S 
Sbjct: 97   EALRDEDIKKCGREGTLLSKYNQQYHKLFKDIPLEEAVLKVCSCALQRDLLLQGRLYISP 156

Query: 616  NWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDST 792
            NW+CFH+ +FG+D K+ IP  SV +IKK K A L+PN L I T T  +Y+FVSLLSRDS 
Sbjct: 157  NWLCFHASLFGRDIKVVIPVVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSV 216

Query: 793  YKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDME 972
            Y +L+ VC HL+         PSS ++    + P         E   L+ ++ + +    
Sbjct: 217  YDMLRRVCTHLQ---------PSSKKSLSVREFPE------EPECKSLEVLIPEMKWRKA 261

Query: 973  GYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQS 1152
               S     P++              +      +  +  D   +R P G   ++      
Sbjct: 262  CPVSRSLSVPDN--------------IPCIPQTSMDSTDDFFSSRKPLGSENAISEEKLE 307

Query: 1153 ELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSL 1308
            E S    R   +     +++L  + +++C L++S+ Y+ +RI+ LE+QL SL
Sbjct: 308  EES----RSNGELRHWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSL 355


>ref|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A isoform 1 [Sus
           scrofa].
          Length = 713

 Score =  104 bits (259), Expect = 2e-22
 Identities = 60/156 (38%), Positives = 89/156 (57%)
 Frame = +1

Query: 457 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 636
           I   K  S +  + N  F KLF  +P  E L   ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69  IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128

Query: 637 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 816
            +F  +T ISI    VT +KK KTA L+PNA+ I T ++++ F S  +RD  + L+  + 
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL- 187

Query: 817 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 924
              +NA +  + +P  L +       S L L   DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221


>ref|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C-like, partial [Sus
           scrofa].
          Length = 486

 Score = 95.9 bits (237), Expect = 9e-20
 Identities = 45/107 (42%), Positives = 69/107 (64%)
 Frame = +1

Query: 475 SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 654
           SSS+    N  + K F  +P  E L   + CALQ++IL QG+L++S+NW+CF+S +F  +
Sbjct: 61  SSSTYKDRNEEYKKQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 120

Query: 655 TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY 795
           T ISI   ++T + K KTA L+PNA+ I T  +++ F S  +RD +Y
Sbjct: 121 TTISIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSY 167


>ref|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B [Sus scrofa].
          Length = 966

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
 Frame = +1

Query: 394 DGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQS 558
           DG ++  + +D     ++  K  +K  S     S +  + N  F KLF  +P  E L   
Sbjct: 53  DGDTMEEKGSD--HSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDSERLIVD 110

Query: 559 FTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 738
           ++CALQ++IL QG+L++S+NWICF+S +F  +T +++    +  + K KTA L+PNA+ +
Sbjct: 111 YSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQV 170

Query: 739 ATVTDRYIFVSLLSRDSTYKLL 804
            T ++++ F S  +RD TY ++
Sbjct: 171 CTDSEKHFFTSFGARDRTYMMM 192


>ref|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 9 [Sus
           scrofa].
          Length = 869

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A + FH+LF  +P EE L   ++C+  K ++  QG +++S N +CF+S + G++ K+ I
Sbjct: 145 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 203

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 813
               +T ++K  T LL+P+ + ++T +  + F   L+ + T+KL++ +
Sbjct: 204 RWVDITQLEKNAT-LLLPDVIQVSTRSSEHFFSVFLNINETFKLMEQL 250


>ref|XP_003124934.2| PREDICTED: TBC1 domain family member 8 [Sus scrofa].
          Length = 1015

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 22/199 (11%)
 Frame = +1

Query: 493  KANMHFHKLFLDVPTEEPLKQSFTCALQKEILY---QGKLFVSDNWICFHSKVFGKDTKI 663
            +A   F + F  +P  E L     C+L          G++F SD++ICF SK  G   K+
Sbjct: 281  RAQNEFFRAFFRLPRREKLHAVLDCSLWTPFSRCHTAGRMFASDSYICFASKEDGC-CKV 339

Query: 664  SIPAFSVTLIKKTKTALLVPNALIIATVTDR-YIFVSLLSRDSTYKLLKSVCGHLENASI 840
             +P   V  I+K +   L+P+ +II+  +   + F+ L  RDS   L++S+   L+    
Sbjct: 340  ILPLREVVSIEKMEDTSLLPSPIIISVRSKMAFQFIELRDRDS---LVESLLVRLKQV-- 394

Query: 841  GNSPNPSSLENSFRADRPSSLPLDFN----DEFSDLDGVVRQRRQDME------------ 972
             ++ +P   + S   D  S +    N      F  L+ +  Q  ++ E            
Sbjct: 395  -HADHPVRYDTSRDEDVTSPVFYSANMCSDHRFGGLETLSSQNNEEREKETNPRLHPEAL 453

Query: 973  --GYSSSGSQTPESENSRD 1023
               +  SGSQ+P+S  SR+
Sbjct: 454  VAAFRQSGSQSPDSRLSRE 472


>ref|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isoform 1 [Sus scrofa].
          Length = 1234

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
 Frame = +1

Query: 493 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 669
           +A +   K F  +P  E L   ++C+  K  +  QG L+++ N +CF+S + GK+  + +
Sbjct: 139 EAELKMRKQF-GMPEGEKLVNYYSCSYWKGHVPRQGWLYLTVNHLCFYSFLLGKEVSLVV 197

Query: 670 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC----------- 816
               VT ++K  T LL P ++ + T      F   L+   T+KL++ +            
Sbjct: 198 RWVDVTRLEKNAT-LLFPESIRVDTRDQELFFSMFLNITETFKLMEQLANLAMRQLLDSE 256

Query: 817 GHLENASIGNSPNPSSLENSFRAD 888
           G LE+ ++   P P    ++ + D
Sbjct: 257 GFLEDKALPRPPQPHKKISALKRD 280


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,999,068
Number of extensions: 1563853
Number of successful extensions: 6297
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6281
Number of HSP's successfully gapped: 12
Length of query: 775
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 668
Effective length of database: 8,679,953
Effective search space: 5798208604
Effective search space used: 5798208604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002038
         (2325 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL892708.2| Sus scrofa unplaced genomic scaffold ChrUScaf594       969   0.0  
Sscrofa_Chr02                                                         502   e-139

>gb|GL892708.2| Sus scrofa unplaced genomic scaffold ChrUScaf594
          Length = 49360

 Score =  969 bits (489), Expect = 0.0
 Identities = 520/530 (98%), Gaps = 3/530 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1429  aagatacaaaacaacttacaaaagctgctcgagaatggtgactgaccgcccagatggctt 1488
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18967 aagatacaaaacaacttacaaaagctgctcgagaatggtgactgaccgcccagatggctt 18908

                                                                         
Query: 1489  gggccaatggaatacctcgcactttccctttgaagtaggtgctccccgaggcgttctggt 1548
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18907 gggccaatggaatacctcgcactttccctttgaagtaggtgctccccgaggcgttctggt 18848

                                                                         
Query: 1549  ggagcgcccccttctggccagaagagc---gagcagacgggcgtccccagcctcgcttgc 1605
             ||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||
Sbjct: 18847 ggagcgcccccttctggccagaagagnagtgagcagacggccgtccccagcctcgcttgc 18788

                                                                         
Query: 1606  ccctggtggtctccggctcagcaaaacggaaagggaataattttggttcccgtgcaataa 1665
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18787 ccctggtggtctccggctcagcaaaacggaaagggaataattttggttcccgtgcaataa 18728

                                                                         
Query: 1666  aagtggaccttcactctctgaggaagttttcaatgctgctgcctgaagaaaacagaccca 1725
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18727 aagtggaccttcactctctgaggaagttttcaatgctgctgcctgaagaaaacagaccca 18668

                                                                         
Query: 1726  tctctggaggtctcgggaagggcccagtggacatccttggatggttgtgatttagcaggt 1785
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18667 tctctggaggtctcaggaagggcccagtggacatccttggatggttgtgatttagcaggt 18608

                                                                         
Query: 1786  tcatgtgactgtcagcaaatacactccactccaggccttttcagccctccctgccctcct 1845
             ||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 18607 tcatgggactgtcagcaaatacactccactccaggccttttgagccctctctgccctcct 18548

                                                                         
Query: 1846  ttgctctcctgtacacccctcttaaccgacctgcaaactaagggatggatagatcatgtg 1905
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18547 ttgctctcctgtacacccctcttaaccgacctgcaaactaagggatggatagatcatgtg 18488

                                                               
Query: 1906  ccaacaaacttgattggtggagttctttaaagaattagccatggctctcc 1955
             |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 18487 ccaacaaacttgattgatggagttctttaaagaattagccatggctctcc 18438



 Score =  658 bits (332), Expect = 0.0
 Identities = 338/340 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1984  cggacagacttgctttaaacaaataacattttagtctgtgtttcttctgttcacgtgttc 2043
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18411 cggacagacttgctttaaacaaataacattttagtctgtgtttcttctgttcacgtgttc 18352

                                                                         
Query: 2044  tggtttaagtcgcctgtgtatattaacttctcggtggagtactggcaagattatcagaca 2103
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18351 tggtttaagtcgcctgtgtatattaacttctcggtggagtactggcaagattatcagaca 18292

                                                                         
Query: 2104  aaacagcttaaactatcccattttgtgttcttttcctctagctaataacttaatagaact 2163
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18291 aaacagcttaaactatcccattttgtgttctgttcctctagctaataacttaatagaact 18232

                                                                         
Query: 2164  gattctcacccagcccaggtcaagaatctgtgagacgtgaaactgaagtactaattcaac 2223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18231 gattctcacccagcccaggtcaagaatctgtgagacgtgaaactgaagtactaattcaac 18172

                                                                         
Query: 2224  ttactttgaaaccaaaactaatgtttaaaccaaaaagcataatagtgattttgatgcaag 2283
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18171 ttactttgaaaccaaaactaatgtttaaaccaaaaagcataatagtgattttgaggcaag 18112

                                                     
Query: 2284  atgaaaaactgcattttaaaaattgtaggtggactgtttt 2323
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 18111 atgaaaaactgcattttaaaaattgtaggtggactgtttt 18072



 Score =  252 bits (127), Expect = 8e-64
 Identities = 127/127 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1020  agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 1079
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27407 agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 27348

                                                                         
Query: 1080  aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 1139
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27347 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 27288

                    
Query: 1140  acatggt 1146
             |||||||
Sbjct: 27287 acatggt 27281



 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Minus

                                                                         
Query: 255   cagctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagc 314
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46514 cagctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagc 46455

                                                                         
Query: 315   cctgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccct 374
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46454 cctgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccct 46395

                  
Query: 375   gcggt 379
             |||||
Sbjct: 46394 gcggt 46390



 Score =  226 bits (114), Expect = 4e-56
 Identities = 117/118 (99%)
 Strand = Plus / Minus

                                                                         
Query: 904   cctctggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 963
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28066 cctcaggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 28007

                                                                       
Query: 964   gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 1021
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28006 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 27949



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                         
Query: 377   ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 436
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41922 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 41863

                                                                   
Query: 437   aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 490
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41862 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 41809



 Score =  208 bits (105), Expect = 1e-50
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1233  tgtctgcgcactaatcatctcgaccttctacatgagatacagaattaatacgctggagga 1292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25595 tgtctgcgcactaatcatctcgaccttctacatgagatacagaattaatacgctggagga 25536

                                                          
Query: 1293  acagctggggtcactcacctccactgtggacacccaccagcccga 1337
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25535 acagctggggtcactcacctccactgtggacacccaccagcccga 25491



 Score =  206 bits (104), Expect = 4e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                         
Query: 557   gttttacctgtgccctgcaaaaagaaatattataccaggggaagctctttgtatcagaca 616
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37878 gttttacctgtgccctgcaaaaagaaatattataccaggggaagctctttgtatcagaca 37819

                                                         
Query: 617   actggatttgttttcattccaaggtctttggaaaagacactaag 660
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37818 actggatttgttttcattccaaggtctttggaaaagacactaag 37775



 Score =  194 bits (98), Expect = 2e-46
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                         
Query: 659   agatctcgattccagctttctcggtaaccctgataaagaaaaccaaaactgcccttctgg 718
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33243 agatctcgattccagctttctcggtaaccctgataaagaaaaccaaaactgcccttctgg 33184

                                                   
Query: 719   tgccaaatgccctgattatagcgacggtcacagacagg 756
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 33183 tgccaaatgccctgattatagcgacggtcacagacagg 33146



 Score =  186 bits (94), Expect = 4e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1338  acagccagccccctccggcctgggatcacaagtgcagttaaacgtggaagtcctctgcca 1397
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21553 acagccagccccctccggcctgggatcacaagtgcagttaaacgtggaagtcctctgcca 21494

                                               
Query: 1398  agagcttacagccaacataatgagattggaaaag 1431
             ||||||||||||||||||||||||||||||||||
Sbjct: 21493 agagcttacagccaacataatgagattggaaaag 21460



 Score =  176 bits (89), Expect = 4e-41
 Identities = 89/89 (100%)
 Strand = Plus / Minus

                                                                         
Query: 1144  ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 1203
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26682 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 26623

                                          
Query: 1204  caccagattcttatattctatgcaattgt 1232
             |||||||||||||||||||||||||||||
Sbjct: 26622 caccagattcttatattctatgcaattgt 26594



 Score =  163 bits (82), Expect = 5e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                         
Query: 829   aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 888
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 30992

                                   
Query: 889   cgcccttcatctctgcctctgg 910
             ||||||||||||||||||||||
Sbjct: 30991 cgcccttcatctctgcctctgg 30970



 Score =  145 bits (73), Expect = 1e-31
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                         
Query: 756   gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 815
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31238 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 31179

                          
Query: 816   tggacacttagaa 828
             |||||||||||||
Sbjct: 31178 tggacacttagaa 31166



 Score =  143 bits (72), Expect = 5e-31
 Identities = 72/72 (100%)
 Strand = Plus / Minus

                                                                         
Query: 487   caggacaaagccaacatgcatttccacaagctgtttctggatgtccccacggaggaaccc 546
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39204 caggacaaagccaacatgcatttccacaagctgtttctggatgtccccacggaggaaccc 39145

                         
Query: 547   ctgaagcaaagt 558
             ||||||||||||
Sbjct: 39144 ctgaagcaaagt 39133


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  502 bits (253), Expect = e-139
 Identities = 256/257 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1         tgtgaagaaagagcttcctgcaatgtgagaattgagcaaggctgaaaggcagagactttc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134863982 tgtgaagaaagagcttcctgcaatgtgagaattgagcaaggctgaaaggcagagactttc 134864041

                                                                             
Query: 61        acgttactggggaggaggagaaatgagcccttgagtttatttctcggcgtagcgattgac 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134864042 acgttactggggaggaggagaaatgagcccttgagtttatttctcggcgtagcgattgac 134864101

                                                                             
Query: 121       aagggcacaatggtgaaaaagaggctgtcgtcatccagtgacacgacgtggaggtctgag 180
                 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 134864102 aagggcacaatggtgaaaaagaggctgtcgtcatccagcgacacgacgtggaggtctgag 134864161

                                                                             
Query: 181       gttccgggcggcccgagcaaggtgggcaccgaggccccgcacagcgcccctgacagcccc 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134864162 gttccgggcggcccgagcaaggtgggcaccgaggccccgcacagcgcccctgacagcccc 134864221

                                  
Query: 241       ggctcggtgtttctcag 257
                 |||||||||||||||||
Sbjct: 134864222 ggctcggtgtttctcag 134864238



 Score =  349 bits (176), Expect = 4e-93
 Identities = 179/180 (99%)
 Strand = Plus / Plus

                                                                             
Query: 2144      gctaataacttaatagaactgattctcacccagcccaggtcaagaatctgtgagacgtga 2203
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134934262 gctaataacttaatagaactgattctcacccagcccaggtcaagaatctgtgagacgtga 134934321

                                                                             
Query: 2204      aactgaagtactaattcaacttactttgaaaccaaaactaatgtttaaaccaaaaagcat 2263
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134934322 aactgaagtactaattcaacttactttgaaaccaaaactaatgtttaaaccaaaaagcat 134934381

                                                                             
Query: 2264      aatagtgattttgatgcaagatgaaaaactgcattttaaaaattgtaggtggactgtttt 2323
                 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134934382 aatagtgattttgaggcaagatgaaaaactgcattttaaaaattgtaggtggactgtttt 134934441



 Score =  252 bits (127), Expect = 8e-64
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1020      agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 1079
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897635 agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 134897694

                                                                             
Query: 1080      aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 1139
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897695 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 134897754

                        
Query: 1140      acatggt 1146
                 |||||||
Sbjct: 134897755 acatggt 134897761



 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                             
Query: 255       cagctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagc 314
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134822797 cagctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagc 134822856

                                                                             
Query: 315       cctgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccct 374
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134822857 cctgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccct 134822916

                      
Query: 375       gcggt 379
                 |||||
Sbjct: 134822917 gcggt 134822921



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                             
Query: 377       ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 436
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134847441 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 134847500

                                                                       
Query: 437       aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 490
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134847501 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 134847554



 Score =  226 bits (114), Expect = 4e-56
 Identities = 117/118 (99%)
 Strand = Plus / Plus

                                                                             
Query: 904       cctctggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 963
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134896976 cctcaggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 134897035

                                                                           
Query: 964       gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 1021
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897036 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 134897093



 Score =  176 bits (89), Expect = 4e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1144      ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 1203
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134898360 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 134898419

                                              
Query: 1204      caccagattcttatattctatgcaattgt 1232
                 |||||||||||||||||||||||||||||
Sbjct: 134898420 caccagattcttatattctatgcaattgt 134898448



 Score =  163 bits (82), Expect = 5e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                             
Query: 829       aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 888
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134893676 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 134893735

                                       
Query: 889       cgcccttcatctctgcctctgg 910
                 ||||||||||||||||||||||
Sbjct: 134893736 cgcccttcatctctgcctctgg 134893757



 Score =  145 bits (73), Expect = 1e-31
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                             
Query: 756       gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 815
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134893489 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 134893548

                              
Query: 816       tggacacttagaa 828
                 |||||||||||||
Sbjct: 134893549 tggacacttagaa 134893561


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 74,919,876
Number of extensions: 512
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 23
Length of query: 2325
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2303
Effective length of database: 2,808,408,574
Effective search space: 6467764945922
Effective search space used: 6467764945922
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)