Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus]. 701 0.0
Alignment gi|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [B... 103 4e-22
Alignment gi|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus]. 103 4e-22
Alignment gi|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [B... 102 1e-21
Alignment gi|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos ... 102 1e-21
Alignment gi|NP_001178348.1| GRAM domain-containing protein 1B [Bos tauru... 96 2e-19
Alignment gi|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like is... 96 2e-19
Alignment gi|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like is... 87 4e-17
Alignment gi|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isofo... 87 4e-17
Alignment gi|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (wit... 60 7e-09
>ref|NP_001073047.1| GRAM domain-containing protein 3 [Bos taurus].
Length = 440
Score = 701 bits (1809), Expect = 0.0
Identities = 361/412 (87%), Positives = 373/412 (90%), Gaps = 8/412 (1%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKKVCR DQKR ISLRSKSSFDGA +A+EK+DCKTE
Sbjct: 29 SEAENGVEEKKKVCRSPGALSPTPSSEAESQDQKRTISLRSKSSFDGAPVANEKSDCKTE 88
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SKND+KIERKKSSSSSQDKANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS+N
Sbjct: 89 SKNDSKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSEN 148
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
LLKSVCGHLEN IG+ P+PSSLENSFRADRPSSLPLDFNDEFSDLDGVVR+RRQDMEGY
Sbjct: 209 LLKSVCGHLENTGIGSGPSPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRRRRQDMEGY 268
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTH----- 1223
SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTR D LVNRVPEGKAKSLP H
Sbjct: 269 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRADPLVNRVPEGKAKSLPGHGKERI 328
Query: 1224 ---GQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS 1394
GQSE +GI+ RVKS+KCPTLH ILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS
Sbjct: 329 MMPGQSETTGIIPRVKSEKCPTLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS 388
Query: 1395 SVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
VDTHQ EQ APSGLGSQVQLNVE LCQELTANIMRLEKIQNNLQKLLENGD
Sbjct: 389 IVDTHQTEQTAPSGLGSQVQLNVEALCQELTANIMRLEKIQNNLQKLLENGD 440
>ref|XP_002694974.1| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 713
Score = 103 bits (258), Expect = 4e-22
Identities = 60/156 (38%), Positives = 88/156 (56%)
Frame = +3
Query: 537 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 716
I K S + + N F KLF +P E L ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69 IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128
Query: 717 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 896
+F +T ISI VT +KK KTA L+PNA+ I T +++ F S +RD + L+ +
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTENEKHFFTSFGARDRCFLLIFRL- 187
Query: 897 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 1004
+NA + + +P L + S L L DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221
>ref|XP_002701901.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 713
Score = 103 bits (258), Expect = 4e-22
Identities = 60/156 (38%), Positives = 88/156 (56%)
Frame = +3
Query: 537 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 716
I K S + + N F KLF +P E L ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69 IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128
Query: 717 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 896
+F +T ISI VT +KK KTA L+PNA+ I T +++ F S +RD + L+ +
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTENEKHFFTSFGARDRCFLLIFRL- 187
Query: 897 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 1004
+NA + + +P L + S L L DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221
>ref|XP_002694973.1| PREDICTED: hypothetical protein isoform 1 [Bos taurus].
Length = 724
Score = 102 bits (254), Expect = 1e-21
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Frame = +3
Query: 459 SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 623
S SS + + + S+N + +K S S + + N F KLF +P E
Sbjct: 45 SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104
Query: 624 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 803
L ++CALQ+EIL QG+L++S+NWICF+S +F +T ISI VT +KK KTA L+P
Sbjct: 105 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164
Query: 804 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 983
NA+ I T +++ F S +RD + L+ + +NA + + +P L + S L
Sbjct: 165 NAIQICTENEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221
Query: 984 PLDFNDE 1004
L DE
Sbjct: 222 GLTSEDE 228
>ref|XP_873474.3| PREDICTED: hypothetical protein isoform 2 [Bos taurus].
Length = 724
Score = 102 bits (254), Expect = 1e-21
Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 5/187 (2%)
Frame = +3
Query: 459 SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 623
S SS + + + S+N + +K S S + + N F KLF +P E
Sbjct: 45 SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104
Query: 624 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 803
L ++CALQ+EIL QG+L++S+NWICF+S +F +T ISI VT +KK KTA L+P
Sbjct: 105 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164
Query: 804 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 983
NA+ I T +++ F S +RD + L+ + +NA + + +P L + S L
Sbjct: 165 NAIQICTENEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221
Query: 984 PLDFNDE 1004
L DE
Sbjct: 222 GLTSEDE 228
>ref|NP_001178348.1| GRAM domain-containing protein 1B [Bos taurus].
Length = 877
Score = 95.5 bits (236), Expect = 2e-19
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324
Query: 840 IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339
>ref|XP_002693082.1| PREDICTED: GRAM domain containing 1B-like isoform 1 [Bos taurus].
Length = 877
Score = 95.5 bits (236), Expect = 2e-19
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324
Query: 840 IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339
>ref|XP_002693083.1| PREDICTED: GRAM domain containing 1B-like isoform 2 [Bos taurus].
Length = 892
Score = 87.4 bits (215), Expect = 4e-17
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T +++Y
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKY 324
Query: 840 ---------------IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 325 FLHRHFLPRSLSIQHFFTSFGARDRTYMMM 354
>ref|XP_595500.4| PREDICTED: GRAM domain containing 1B-like isoform 3 [Bos taurus].
Length = 892
Score = 87.4 bits (215), Expect = 4e-17
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 21/150 (14%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T +++Y
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKY 324
Query: 840 ---------------IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 325 FLHRHFLPRSLSIQHFFTSFGARDRTYMMM 354
>ref|XP_002694411.1| PREDICTED: TBC1 domain family, member 9 (with GRAM domain) [Bos
taurus].
Length = 1249
Score = 60.1 bits (144), Expect = 7e-09
Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + FH+LF +P EE L ++C+ K ++ QG +++S N +CF+S + G++ K+ I
Sbjct: 125 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 183
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 893
+T ++K T LL+P+ + ++T + + F L+ + T+KL++ +
Sbjct: 184 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,398,004
Number of extensions: 2244061
Number of successful extensions: 9532
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9489
Number of HSP's successfully gapped: 15
Length of query: 687
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 578
Effective length of database: 14,074,782
Effective search space: 8135223996
Effective search space used: 8135223996
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Can... 658 0.0
Alignment gi|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Can... 140 4e-33
Alignment gi|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Can... 102 1e-21
Alignment gi|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isof... 96 1e-19
Alignment gi|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isof... 96 2e-19
Alignment gi|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris]. 93 1e-18
Alignment gi|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Can... 60 8e-09
Alignment gi|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Can... 60 8e-09
Alignment gi|XP_531780.2| PREDICTED: similar to TBC1 domain family member... 53 1e-06
>ref|XP_531891.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 466
Score = 658 bits (1698), Expect(2) = 0.0
Identities = 334/394 (84%), Positives = 357/394 (90%)
Frame = +3
Query: 333 IRSEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCK 512
+ SEAENGVE+KKK+C+ DQKR++SLRSKSSF+GASL S+KNDCK
Sbjct: 41 LSSEAENGVEDKKKICKSPTAQSPSPSNEAESSDQKRLLSLRSKSSFEGASLGSDKNDCK 100
Query: 513 TESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVS 692
TESKN++K++RKK SSSSQ KANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS
Sbjct: 101 TESKNESKMDRKKYSSSSQYKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVS 160
Query: 693 DNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDST 872
+NWICFHSKVFGKDTKISIP FSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDST
Sbjct: 161 ENWICFHSKVFGKDTKISIPVFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDST 220
Query: 873 YKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDME 1052
YKLLKSVCGHLEN S+GNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQ+ME
Sbjct: 221 YKLLKSVCGHLENMSVGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQEME 280
Query: 1053 GYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQS 1232
GYSSSGSQTPESENSRDFHVTESQTVLNVSKGE KP R DA VNRVPEGKAKSLP HGQS
Sbjct: 281 GYSSSGSQTPESENSRDFHVTESQTVLNVSKGETKPARADAHVNRVPEGKAKSLPVHGQS 340
Query: 1233 ELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQ 1412
E G++H+VKSQ TLH ILIFYAIVVCALIISTFYMRYRINTLEE+LGSLTS VDTH
Sbjct: 341 ETIGVLHKVKSQTRTTLHHILIFYAIVVCALIISTFYMRYRINTLEERLGSLTSIVDTHH 400
Query: 1413 PEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKI 1514
EQ APSGLGSQVQLNVEVLCQELTANI++LEK+
Sbjct: 401 -EQTAPSGLGSQVQLNVEVLCQELTANIIKLEKV 433
Score = 57.8 bits (138), Expect(2) = 0.0
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 107 MVKKRLSSSSDTTWRSEVPGGPSKVGTEAPHSPPDSPGSVFL 232
MVKK LSSS DT +R E PG P K G EAPHS DSPGSVFL
Sbjct: 1 MVKKSLSSS-DTVFRFETPGSPRKTGPEAPHSSTDSPGSVFL 41
>ref|XP_854022.1| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 500
Score = 140 bits (354), Expect = 4e-33
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 22/294 (7%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 752
K N +HKLF D+P EE + + +CALQ+++L QG+L++S NW+CFH+ +FGKD K+ IP
Sbjct: 209 KYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIP 268
Query: 753 AFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENAS---- 917
SV +IKK K A L+PN L I T T +Y+FVSLLSRDS Y +L+ VC HL+ +S
Sbjct: 269 VVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSL 328
Query: 918 ----IGNSPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSG 1070
P SL E +R P+S L D ++ + R ++ + S
Sbjct: 329 SVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPD---NIPCIPRASMDSVDSFFPS- 384
Query: 1071 SQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIV 1250
+ P S +S + L G A+ +L+ + +P + +
Sbjct: 385 RKPPGS--------AQSPSSLREWGGGARKGCVCSLLGWALASCPRKMPNCSPITENAVC 436
Query: 1251 HRVKSQKCPTL--------HQILIFYAIVVCALIISTFYMRYRINTLEEQLGSL 1388
K ++ +Q+L +++C L++S+ Y+ +RI+ LE+QL SL
Sbjct: 437 EEEKLEEESRSDAELRLWDYQLLKIIFVLICFLVMSSSYLAFRISRLEQQLCSL 490
>ref|XP_541699.2| PREDICTED: similar to CG3304-PA, isoform A [Canis familiaris].
Length = 987
Score = 102 bits (254), Expect = 1e-21
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Frame = +3
Query: 519 SKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKL 683
S+N + +K S S + + N F KLF +P E L ++CALQ+EIL QG+L
Sbjct: 328 SRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRL 387
Query: 684 FVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSR 863
++S+NWICF+S +F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +R
Sbjct: 388 YLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGAR 447
Query: 864 DSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 1004
D + L+ + +NA + + +P L + S L L DE
Sbjct: 448 DRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 491
>ref|XP_859362.1| PREDICTED: similar to CG3304-PA, isoform A isoform 2 [Canis
familiaris].
Length = 745
Score = 95.9 bits (237), Expect = 1e-19
Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Frame = +3
Query: 519 SKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKL 683
SK+ ++ +K S S + + N F KLF +P E L ++CALQ++IL QG+L
Sbjct: 77 SKSHKRLSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRL 136
Query: 684 FVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSR 863
++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++ F S +R
Sbjct: 137 YLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGAR 196
Query: 864 DSTYKLL 884
D TY ++
Sbjct: 197 DRTYMMM 203
>ref|XP_546470.2| PREDICTED: similar to CG3304-PA, isoform A isoform 1 [Canis
familiaris].
Length = 877
Score = 95.5 bits (236), Expect = 2e-19
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 205 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 264
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++
Sbjct: 265 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 324
Query: 840 IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 325 FFTSFGARDRTYMMM 339
>ref|XP_849625.1| PREDICTED: similar to ZC328.3 [Canis familiaris].
Length = 677
Score = 92.8 bits (229), Expect = 1e-18
Identities = 43/107 (40%), Positives = 68/107 (63%)
Frame = +3
Query: 555 SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 734
SSS+ N + + F +P E L + CALQ++IL QG+L++S+NW+CF+S +F +
Sbjct: 74 SSSTYKDRNEEYKRQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 133
Query: 735 TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY 875
T I I ++T + K KTA L+PNA+ I T +++ F S +RD +Y
Sbjct: 134 TTICIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSY 180
>ref|XP_533283.2| PREDICTED: similar to Y45F10A.6b isoform 1 [Canis familiaris].
Length = 1266
Score = 60.1 bits (144), Expect = 8e-09
Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + FH+LF +P EE L ++C+ K ++ QG +++S N +CF+S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 201
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 893
+T ++K T LL+P+ + ++T + + F L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|XP_855810.1| PREDICTED: similar to Y45F10A.6b isoform 4 [Canis familiaris].
Length = 1175
Score = 60.1 bits (144), Expect = 8e-09
Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + FH+LF +P EE L ++C+ K ++ QG +++S N +CF+S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 201
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 893
+T ++K T LL+P+ + ++T + + F L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|XP_531780.2| PREDICTED: similar to TBC1 domain family member 8 (Vascular
Rab-GAP/TBC-containing protein) (AD 3) [Canis
familiaris].
Length = 1122
Score = 53.1 bits (126), Expect = 1e-06
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQKEILY---QGKLFVSDNWICFHSKVFGKDTKI 743
+A F + F +P E L C+L G++F SD +ICF SK G +
Sbjct: 260 RAQNEFFRAFFRLPRREKLHAVLDCSLWTPFSRCHTVGRMFTSDRYICFASKEDGC-CNV 318
Query: 744 SIPAFSVTLIKKTKTALLVPNALIIATVTDR-YIFVSLLSRDSTYKLLKSVCGHLENASI 920
+P V I+K + L+PN +I++ + + F+ L RD+ L++S+ L+
Sbjct: 319 ILPLREVVSIEKMEDTSLLPNPIIVSIRSKMAFQFIELKDRDN---LVESLLMRLKQV-- 373
Query: 921 GNSPNPSSLENSFRADRPS----SLPLDFNDEFSDLDGVVRQRRQDMEGYSS-------- 1064
++ +P + S D S S L + +F DL+ V Q ++ E +
Sbjct: 374 -HANHPVHYDTSRDEDMTSPVFHSTSLCSDHKFGDLEMVSSQNSEESEKEKNPQLHPEAL 432
Query: 1065 ------SGSQTPESENSRD 1103
SGSQ+P+S SR+
Sbjct: 433 IPVLQQSGSQSPDSRMSRE 451
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,962,759
Number of extensions: 2296474
Number of successful extensions: 10256
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10144
Number of HSP's successfully gapped: 10
Length of query: 687
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 577
Effective length of database: 15,207,544
Effective search space: 8774752888
Effective search space used: 8774752888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [... 689 0.0
Alignment gi|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [... 689 0.0
Alignment gi|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Hom... 689 0.0
Alignment gi|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [... 655 0.0
Alignment gi|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [... 592 e-169
Alignment gi|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapie... 146 8e-35
Alignment gi|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 ... 105 1e-22
Alignment gi|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Ho... 104 4e-22
Alignment gi|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Ho... 98 3e-20
Alignment gi|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens]. 96 2e-19
>ref|NP_001139791.1| GRAM domain-containing protein 3 isoform 1 [Homo sapiens].
Length = 447
Score = 689 bits (1778), Expect = 0.0
Identities = 354/404 (87%), Positives = 363/404 (89%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKK CR DQK+IISL SKSSFDGASLAS+KNDCKTE
Sbjct: 44 SEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCKTE 103
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+N
Sbjct: 104 SKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 163
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 164 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 223
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
LLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGY
Sbjct: 224 LLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGY 283
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1238
SSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP G SE
Sbjct: 284 SSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSET 343
Query: 1239 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPE 1418
GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH E
Sbjct: 344 VGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTE 403
Query: 1419 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
Q APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 404 QAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 447
>ref|NP_001139794.1| GRAM domain-containing protein 3 isoform 5 [Homo sapiens].
Length = 416
Score = 689 bits (1778), Expect = 0.0
Identities = 354/404 (87%), Positives = 363/404 (89%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKK CR DQK+IISL SKSSFDGASLAS+KNDCKTE
Sbjct: 13 SEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCKTE 72
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+N
Sbjct: 73 SKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 132
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 133 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 192
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
LLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGY
Sbjct: 193 LLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGY 252
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1238
SSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP G SE
Sbjct: 253 SSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSET 312
Query: 1239 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPE 1418
GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH E
Sbjct: 313 VGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTE 372
Query: 1419 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
Q APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 373 QAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 416
>ref|NP_076416.2| GRAM domain-containing protein 3 isoform 2 [Homo sapiens].
Length = 432
Score = 689 bits (1778), Expect = 0.0
Identities = 354/404 (87%), Positives = 363/404 (89%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKK CR DQK+IISL SKSSFDGASLAS+KNDCKTE
Sbjct: 29 SEAENGVEEKKKACRSPTAQSPTPSVEADSPDQKKIISLWSKSSFDGASLASDKNDCKTE 88
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+N
Sbjct: 89 SKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSEN 148
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
LLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGY
Sbjct: 209 LLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGY 268
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1238
SSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP G SE
Sbjct: 269 SSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSET 328
Query: 1239 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPE 1418
GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH E
Sbjct: 329 VGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTE 388
Query: 1419 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
Q APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 389 QAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLLENGD 432
>ref|NP_001139793.1| GRAM domain-containing protein 3 isoform 4 [Homo sapiens].
Length = 440
Score = 655 bits (1690), Expect(2) = 0.0
Identities = 333/364 (91%), Positives = 341/364 (93%)
Frame = +3
Query: 459 SKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQS 638
SKSSFDGASLAS+KNDCKTESKND K ERKKSSSSSQ KANMHFHKLFL VPTEEPLKQS
Sbjct: 77 SKSSFDGASLASDKNDCKTESKNDPKTERKKSSSSSQYKANMHFHKLFLSVPTEEPLKQS 136
Query: 639 FTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 818
FTCALQKEILYQGKLFVS+NWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII
Sbjct: 137 FTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 196
Query: 819 ATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFN 998
ATVTDRYIFVSLLSRDSTYKLLKSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFN
Sbjct: 197 ATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFN 256
Query: 999 DEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDAL 1178
DEFSDLDGVV+QRRQDMEGYSSSGSQTPESENSRDFH TESQTVLNVSKGEAKPTR DA
Sbjct: 257 DEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHATESQTVLNVSKGEAKPTRADAH 316
Query: 1179 VNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRI 1358
VNRVPEGKAKSLP G SE GI+H+VKSQKCP LH ILIFYAIVVCALIISTFYMRYRI
Sbjct: 317 VNRVPEGKAKSLPVQGLSETVGILHKVKSQKCPMLHHILIFYAIVVCALIISTFYMRYRI 376
Query: 1359 NTLEEQLGSLTSSVDTHQPEQPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLL 1538
NTLEEQLG LTS VDTH EQ APSGL SQVQ NVEVLCQELTANI++LEKIQNNLQKLL
Sbjct: 377 NTLEEQLGLLTSIVDTHNTEQAAPSGLRSQVQFNVEVLCQELTANIVKLEKIQNNLQKLL 436
Query: 1539 ENGD 1550
ENGD
Sbjct: 437 ENGD 440
Score = 51.2 bits (121), Expect(2) = 0.0
Identities = 25/36 (69%), Positives = 28/36 (77%)
Frame = +1
Query: 340 QRLRTVWRRKRRSAGRQQPCPLPRPARPSLQTRRES 447
QRLR VWRRKR+ AGRQQP PLP R + QTRR+S
Sbjct: 23 QRLRMVWRRKRKPAGRQQPNPLPHLWRRTPQTRRKS 58
>ref|NP_001139792.1| GRAM domain-containing protein 3 isoform 3 [Homo sapiens].
Length = 328
Score = 592 bits (1526), Expect = e-169
Identities = 299/326 (91%), Positives = 306/326 (93%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 752
KANMHFHKLFL VPTEEPLKQSFTCALQKEILYQGKLFVS+NWICFHSKVFGKDTKISIP
Sbjct: 3 KANMHFHKLFLSVPTEEPLKQSFTCALQKEILYQGKLFVSENWICFHSKVFGKDTKISIP 62
Query: 753 AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSP 932
AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLEN S+GNSP
Sbjct: 63 AFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENTSVGNSP 122
Query: 933 NPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHV 1112
NPSS ENSFRADRPSSLPLDFNDEFSDLDGVV+QRRQDMEGYSSSGSQTPESENSRDFH
Sbjct: 123 NPSSAENSFRADRPSSLPLDFNDEFSDLDGVVQQRRQDMEGYSSSGSQTPESENSRDFHA 182
Query: 1113 TESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQI 1292
TESQTVLNVSKGEAKPTR DA VNRVPEGKAKSLP G SE GI+H+VKSQKCP LH I
Sbjct: 183 TESQTVLNVSKGEAKPTRADAHVNRVPEGKAKSLPVQGLSETVGILHKVKSQKCPMLHHI 242
Query: 1293 LIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPEQPAPSGLGSQVQLNVEVL 1472
LIFYAIVVCALIISTFYMRYRINTLEEQLG LTS VDTH EQ APSGL SQVQ NVEVL
Sbjct: 243 LIFYAIVVCALIISTFYMRYRINTLEEQLGLLTSIVDTHNTEQAAPSGLRSQVQFNVEVL 302
Query: 1473 CQELTANIMRLEKIQNNLQKLLENGD 1550
CQELTANI++LEKIQNNLQKLLENGD
Sbjct: 303 CQELTANIVKLEKIQNNLQKLLENGD 328
>ref|NP_001012660.1| GRAM domain-containing protein 2 [Homo sapiens].
Length = 354
Score = 146 bits (368), Expect = 8e-35
Identities = 102/286 (35%), Positives = 146/286 (51%), Gaps = 12/286 (4%)
Frame = +3
Query: 570 DKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+K N +HKLF DVP EE + + +CALQ++ L QG+L++S NW+CFH+ +FGKD K+ I
Sbjct: 68 NKYNQQYHKLFKDVPLEEVVLKVCSCALQRDFLLQGRLYISPNWLCFHASLFGKDIKVVI 127
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENASIGN 926
P SV +IKK K A L+PN L I T T +YIFVSLLSRDS Y LL+ VC HL+ +S +
Sbjct: 128 PVVSVQMIKKHKMARLLPNGLAITTNTSQKYIFVSLLSRDSVYDLLRRVCTHLQPSSKKS 187
Query: 927 ------SPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSGS 1073
S P SL E +R PSS L D + D
Sbjct: 188 LSVREFSGEPESLEVLIPEMKWRKVCPSSRSLSLPDNIP----CIPPSSVDSTDSFFPSR 243
Query: 1074 QTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVH 1253
+ P SE SR +E+ P + N P K + + EL
Sbjct: 244 KPPMSEKSRAQVASENGGRWAWPMPGWGPACPKKMPNCSPTAKN---AVYEEDELEEEPR 300
Query: 1254 RVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLT 1391
+ + +F+ +++C L++S+ Y+ +RI+ LE+QL SL+
Sbjct: 301 STGELRLWDYRLLKVFF-VLICFLVMSSSYLAFRISRLEQQLCSLS 345
>ref|NP_001129671.1| GRAM domain-containing protein 1A isoform 2 [Homo sapiens].
Length = 713
Score = 105 bits (263), Expect = 1e-22
Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 12/205 (5%)
Frame = +3
Query: 537 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 716
I K S + + N F KLF +P E L ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69 IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128
Query: 717 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 896
+F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD + L+ +
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL- 187
Query: 897 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEF----SDLDGVVRQRRQD----ME 1052
+NA + + +P L + S L L DE L+G+ + +
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDEDYVSPLQLNGLGTPKEVGDVIALS 245
Query: 1053 GYSSSG----SQTPESENSRDFHVT 1115
+SSG SQ P SR HVT
Sbjct: 246 DITSSGAADRSQEPSPVGSRRGHVT 270
>ref|NP_065946.2| GRAM domain-containing protein 1A isoform 1 [Homo sapiens].
Length = 724
Score = 104 bits (259), Expect = 4e-22
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 17/236 (7%)
Frame = +3
Query: 459 SKSSFDGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEE 623
S SS + + + S+N + +K S S + + N F KLF +P E
Sbjct: 45 SDSSSEKGGVPGTPSTQSLGSRNFIRNSKKMQSWYSMLSPTYKQRNEDFRKLFSKLPEAE 104
Query: 624 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 803
L ++CALQ+EIL QG+L++S+NWICF+S +F +T ISI VT +KK KTA L+P
Sbjct: 105 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 164
Query: 804 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 983
NA+ I T ++++ F S +RD + L+ + +NA + + +P L + S L
Sbjct: 165 NAIQICTESEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 221
Query: 984 PLDFNDEF----SDLDGVVRQRRQD----MEGYSSSG----SQTPESENSRDFHVT 1115
L DE L+G+ + + +SSG SQ P SR HVT
Sbjct: 222 GLTSEDEDYVSPLQLNGLGTPKEVGDVIALSDITSSGAADRSQEPSPVGSRRGHVT 277
>ref|NP_060047.3| GRAM domain-containing protein 1C isoform 1 [Homo sapiens].
Length = 662
Score = 98.2 bits (243), Expect = 3e-20
Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 48/281 (17%)
Frame = +3
Query: 555 SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 734
SSS+ N + + F +P E L + CALQ++IL QG+L++S+NW+CF+S +F +
Sbjct: 60 SSSTYKDRNEEYRRQFTHLPDTERLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 119
Query: 735 TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY------------- 875
T ISI ++T + K KTA L+PNA+ I T ++++ F S +RD +Y
Sbjct: 120 TTISIALKNITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLD 179
Query: 876 ---------KLLKSVCG--------HLENASIG------NSPNPSSLENSFRADRPSSLP 986
+LL+ G +EN S+ SP SSL++S D S
Sbjct: 180 KSLTRQEFWQLLQQNYGTELGLNAEEMENLSLSIEDVQPRSPGRSSLDDSGERDEKLSKS 239
Query: 987 LDFNDEFSDLDGVVRQRRQDMEGYSSSGS-QTPESENSRDFHVTESQTV----------- 1130
+ F E + V + +G SS G ES+N + + T+
Sbjct: 240 ISFTSE--SISRV--SETESFDGNSSKGGLGKEESQNEKQTKKSLLPTLEKKLTRVPSKS 295
Query: 1131 LNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVH 1253
L+++K E + + V E HG+ ++ I H
Sbjct: 296 LDLNKNEYLSLDKSSTSDSVDEENVPEKDLHGRLFINRIFH 336
>ref|NP_065767.1| GRAM domain-containing protein 1B [Homo sapiens].
Length = 738
Score = 95.5 bits (236), Expect = 2e-19
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 62 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 121
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++
Sbjct: 122 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 181
Query: 840 IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 182 FFTSFGARDRTYMMM 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 83,350,030
Number of extensions: 2260084
Number of successful extensions: 9574
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9539
Number of HSP's successfully gapped: 13
Length of query: 687
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 578
Effective length of database: 14,704,088
Effective search space: 8498962864
Effective search space used: 8498962864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus]. 661 0.0
Alignment gi|NP_001028670.1| GRAM domain-containing protein 2 [Mus muscul... 134 3e-31
Alignment gi|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus]. 102 2e-21
Alignment gi|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus]. 96 1e-19
Alignment gi|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus m... 58 2e-08
Alignment gi|NP_061245.3| TBC1 domain family member 8 [Mus musculus]. 53 1e-06
Alignment gi|NP_084021.2| TBC1 domain family member 9B [Mus musculus]. 52 2e-06
>ref|NP_080516.2| GRAM domain-containing protein 3 [Mus musculus].
Length = 432
Score = 661 bits (1706), Expect = 0.0
Identities = 332/404 (82%), Positives = 361/404 (89%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENG E++++V + DQKR + L SKSSFDG+SL S+KNDCKTE
Sbjct: 29 SEAENGAEDRRRVSKSPTAQSPTSSVEAESPDQKRSLGLWSKSSFDGSSLLSDKNDCKTE 88
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SK D+K ERKKSSSSSQ KANMHFHKLFLDVPTEEPL+QSFTCALQKEILYQGKLFVS+N
Sbjct: 89 SKTDSKTERKKSSSSSQYKANMHFHKLFLDVPTEEPLRQSFTCALQKEILYQGKLFVSEN 148
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 149 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 208
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
L+KSVCGHLEN S+GNSPNPSS ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQD+EGY
Sbjct: 209 LIKSVCGHLENTSVGNSPNPSSAENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDLEGY 268
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1238
SSSGSQTPESENSRDFHVTESQTVLNV+KGE KP RTDA +R P+GKAK LP HGQSE
Sbjct: 269 SSSGSQTPESENSRDFHVTESQTVLNVTKGETKPPRTDAHGSRAPDGKAKILPAHGQSET 328
Query: 1239 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPE 1418
GI+H+++S+KCPTLH ILI YAI+VCALIISTFYMRYRINTLEE+LG+LTS +D H E
Sbjct: 329 IGILHKMESRKCPTLHHILIVYAIIVCALIISTFYMRYRINTLEERLGTLTSIMDPHSTE 388
Query: 1419 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
Q APSGLGSQ+QLNVEVLCQELTANI++LEKIQNNLQKLLENGD
Sbjct: 389 QTAPSGLGSQMQLNVEVLCQELTANIVKLEKIQNNLQKLLENGD 432
>ref|NP_001028670.1| GRAM domain-containing protein 2 [Mus musculus].
Length = 312
Score = 134 bits (337), Expect = 3e-31
Identities = 64/136 (47%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +3
Query: 513 TESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVS 692
+E I++ + + K N +HKLF D+P EE + + +CALQ+++L G+L++S
Sbjct: 43 SEGSKGEDIKKYSREGTLRSKYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLHGRLYIS 102
Query: 693 DNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDS 869
NW+CFH+ +FGKD K+ IP SV LIKK K A L+PN L I T T +Y+FVSLLSRDS
Sbjct: 103 PNWLCFHASLFGKDIKVVIPVVSVQLIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDS 162
Query: 870 TYKLLKSVCGHLENAS 917
Y +L+ VC HL+ +S
Sbjct: 163 VYDMLRRVCTHLQPSS 178
>ref|NP_082174.3| GRAM domain-containing protein 1A [Mus musculus].
Length = 722
Score = 102 bits (253), Expect = 2e-21
Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 5/187 (2%)
Frame = +3
Query: 459 SKSSFDGASLASEKNDCKTESKNDAKIERKKSSSSSQ-----DKANMHFHKLFLDVPTEE 623
S SS + + ++ + S+N + +K S S + N F KLF +P E
Sbjct: 47 SDSSSEKSGVSGTLSTQSLGSRNFIRNSKKMQSWYSMLCPTYKQRNEDFRKLFSKLPEAE 106
Query: 624 PLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVP 803
L ++CALQ+EIL QG+L++S+NWICF+S +F +T ISI VT +KK KTA L+P
Sbjct: 107 RLIVDYSCALQREILLQGRLYLSENWICFYSNIFRWETTISIQLKEVTCLKKEKTAKLIP 166
Query: 804 NALIIATVTDRYIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSL 983
NA+ I T ++++ F S +RD + L+ + +NA + + +P L + S L
Sbjct: 167 NAIQICTESEKHFFTSFGARDRCFLLIFRL---WQNALLEKTLSPRELWHLVHQCYGSEL 223
Query: 984 PLDFNDE 1004
L DE
Sbjct: 224 GLTSEDE 230
>ref|NP_766356.1| GRAM domain-containing protein 1B [Mus musculus].
Length = 878
Score = 95.5 bits (236), Expect = 1e-19
Identities = 47/135 (34%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Frame = +3
Query: 498 KNDCKTESKNDAKIERKKSSS------SSQDKANMHFHKLFLDVPTEEPLKQSFTCALQK 659
+ C ++S KKS S + + N F KLF +P E L ++CALQ+
Sbjct: 206 QRSCSSQSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQR 265
Query: 660 EILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRY 839
+IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ + T ++++
Sbjct: 266 DILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKH 325
Query: 840 IFVSLLSRDSTYKLL 884
F S +RD TY ++
Sbjct: 326 FFTSFGARDRTYMMM 340
>ref|NP_001104774.1| TBC1 domain family member 9 isoform 1 [Mus musculus].
Length = 1264
Score = 58.2 bits (139), Expect = 2e-08
Identities = 33/108 (30%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + FH+LF +P EE L ++C+ K + QG +++S N +CF S + G++ K+ I
Sbjct: 143 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGRVPRQGWMYLSINHLCFSSFLMGREAKLVI 201
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 893
+T ++K T LL+P+ + ++T + + F L+ + T+KL++ +
Sbjct: 202 RWVDITQLEKNAT-LLLPDMIKVSTRSSEHFFSVFLNINETFKLMEQL 248
>ref|NP_061245.3| TBC1 domain family member 8 [Mus musculus].
Length = 1134
Score = 52.8 bits (125), Expect = 1e-06
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
Frame = +3
Query: 486 LASEKNDCKTESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEI 665
L +E D + + ++I ++ + +Q++ F + F +P EE L C+L
Sbjct: 256 LDNEVFDLDPDLQEPSQITKRDLEARAQNE----FFRAFFRLPREEKLHAVADCSLWTPF 311
Query: 666 LY---QGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDR 836
G++F SD++ICF S+ G + +P V I+K + L+PN +I++ +
Sbjct: 312 SRCHTAGRIFSSDSYICFASREDGC-CNVVLPLREVVSIEKMEDTSLLPNPIIVSIRSKM 370
Query: 837 -YIFVSLLSRDSTYKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFN----- 998
+ F+ L R++ + G L ++ +P E S D +S P+ ++
Sbjct: 371 AFQFIELKDRENLVE------GLLLRLKQVHANHPVHYETSPSDDDMAS-PVFYSASICT 423
Query: 999 DEFSDLDGVVRQRRQDMEG-------------YSSSGSQTPESENSRD 1103
D+F DL+ V Q ++ E + SGSQ+P+S SR+
Sbjct: 424 DKFGDLEMVASQSSEEREEKRPLPHPEPLTAVFQQSGSQSPDSRLSRE 471
>ref|NP_084021.2| TBC1 domain family member 9B [Mus musculus].
Length = 1246
Score = 52.0 bits (123), Expect = 2e-06
Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQ---KEILYQGKLFVSDNWICFHSKVFGKDTKI 743
+A ++ +P +E L C L ++ G++F+S+N+ICF SK ++
Sbjct: 284 RAKNECYRATFRLPKDERLDGHTGCTLWTPFNKLHIPGQMFISNNYICFASKE-EDACRL 342
Query: 744 SIPAFSVTLIKKTKTALLVPNALIIATVTD-RYIFVSLLSRDSTYK----LLKSVCGHLE 908
IP VT+++K ++ ++P+ L I+T + ++F +L RD + L+
Sbjct: 343 IIPLREVTIVEKADSSSVLPSPLSISTKSKMTFLFANLKDRDFLVQRISDFLQKTPSKQT 402
Query: 909 NASIG------NSPNPSSLENSFRADRP---SSLPLDFNDEFSDLD------GVVR--QR 1037
+SIG + P P SL A P S PL FS + G+++ Q+
Sbjct: 403 GSSIGGTKASVSDPAPESLPTPQEASEPPASPSSPLSSPPSFSTQEIPTTSQGLLKVFQK 462
Query: 1038 RQDMEGYSSSGSQTPESENSRDFHVTE 1118
ME + G++ E S + H E
Sbjct: 463 NSPMEDLGAKGAKEKMKEESWNIHFFE 489
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 70,689,056
Number of extensions: 1901394
Number of successful extensions: 7859
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7832
Number of HSP's successfully gapped: 7
Length of query: 687
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 579
Effective length of database: 12,373,671
Effective search space: 7164355509
Effective search space used: 7164355509
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-... 756 0.0
Alignment gi|XP_003123937.2| PREDICTED: GRAM domain-containing protein 3-... 220 2e-57
Alignment gi|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-... 143 4e-34
Alignment gi|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa]. 142 9e-34
Alignment gi|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A... 104 2e-22
Alignment gi|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C... 96 8e-20
Alignment gi|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B... 94 2e-19
Alignment gi|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain ... 60 5e-09
Alignment gi|XP_003124934.2| PREDICTED: TBC1 domain family member 8 [Sus ... 52 1e-06
Alignment gi|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isof... 50 5e-06
>ref|XP_003360750.1| PREDICTED: GRAM domain-containing protein 3-like [Sus scrofa].
Length = 415
Score = 756 bits (1952), Expect = 0.0
Identities = 387/404 (95%), Positives = 388/404 (96%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKKVCR DQKRIISLRSKSSFDGASLASEKNDCKTE
Sbjct: 12 SEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKNDCKTE 71
Query: 519 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 698
SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN
Sbjct: 72 SKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDN 131
Query: 699 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 878
WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK
Sbjct: 132 WICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYK 191
Query: 879 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 1058
LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY
Sbjct: 192 LLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGY 251
Query: 1059 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 1238
SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL
Sbjct: 252 SSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQSEL 311
Query: 1239 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSSVDTHQPE 1418
SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTS+VDTHQPE
Sbjct: 312 SGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLTSTVDTHQPE 371
Query: 1419 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 1550
QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD
Sbjct: 372 QPAPSGLGSQVQLNVEVLCQELTANIMRLEKIQNNLQKLLENGD 415
>ref|XP_003123937.2| PREDICTED: GRAM domain-containing protein 3-like [Sus scrofa].
Length = 384
Score = 220 bits (561), Expect = 2e-57
Identities = 112/116 (96%), Positives = 113/116 (97%), Gaps = 3/116 (2%)
Frame = +3
Query: 975 SSLPL---DFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK 1145
SSLP+ DFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK
Sbjct: 269 SSLPISPQDFNDEFSDLDGVVRQRRQDMEGYSSSGSQTPESENSRDFHVTESQTVLNVSK 328
Query: 1146 GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV 1313
GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV
Sbjct: 329 GEAKPTRTDALVNRVPEGKAKSLPTHGQSELSGIVHRVKSQKCPTLHQILIFYAIV 384
Score = 113 bits (283), Expect = 4e-25
Identities = 61/77 (79%), Positives = 61/77 (79%)
Frame = +3
Query: 339 SEAENGVEEKKKVCRXXXXXXXXXXXXXXXXDQKRIISLRSKSSFDGASLASEKNDCKTE 518
SEAENGVEEKKKVCR DQKRIISLRSKSSFDGASLASEKNDCKTE
Sbjct: 12 SEAENGVEEKKKVCRSPTALSPAPSSEAESPDQKRIISLRSKSSFDGASLASEKNDCKTE 71
Query: 519 SKNDAKIERKKSSSSSQ 569
SKNDAKIERKKSSSSSQ
Sbjct: 72 SKNDAKIERKKSSSSSQ 88
>ref|XP_001929143.2| PREDICTED: LOW QUALITY PROTEIN: GRAM domain-containing protein 2 [Sus
scrofa].
Length = 349
Score = 143 bits (360), Expect = 4e-34
Identities = 103/306 (33%), Positives = 154/306 (50%), Gaps = 26/306 (8%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIP 752
K N +HKLF D+P EE + + +CALQ+++L QG+L++S NW+CFH+ +FGKD K+ IP
Sbjct: 65 KYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIP 124
Query: 753 AFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDSTYKLLKSVCGHLENAS---- 917
SV +IKK K A L+PN L I T T +Y+FVSLLSRDS Y +L+ VC HL+ +S
Sbjct: 125 VVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSL 184
Query: 918 ----IGNSPNPSSL-----ENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDMEGYSSSG 1070
P SL E +R P+S L D ++ + R +G S
Sbjct: 185 SVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPD---NIPCIPRASVDSADGLFPS- 240
Query: 1071 SQTPESENSRDFHVTESQTVLNVSKG--------EAKPTRTDALVNRVPEGKAKSLPTHG 1226
+ S +F V + S+G P N V E K
Sbjct: 241 ---RKPPGSGEFSGKPKAQVASESEGGWGPAFCPSKSPHXCPVAENAVCEDK-------- 289
Query: 1227 QSELSGIVHRVKSQKCPTL--HQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLT--S 1394
+ +S + L +++L + +++C L++S+ Y+ +RI+ LE+QL SLT
Sbjct: 290 ------LEEEARSDRELRLWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSLTWDG 343
Query: 1395 SVDTHQ 1412
SV H+
Sbjct: 344 SVPGHR 349
>ref|NP_001230512.1| GRAM domain containing 2-like [Sus scrofa].
Length = 365
Score = 142 bits (357), Expect = 9e-34
Identities = 94/302 (31%), Positives = 154/302 (50%), Gaps = 3/302 (0%)
Frame = +3
Query: 516 ESKNDAKIERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSD 695
E+ D I++ + K N +HKLF D+P EE + + +CALQ+++L QG+L++S
Sbjct: 97 EALRDEDIKKCGREGTLLSKYNQQYHKLFKDIPLEEAVLKVCSCALQRDLLLQGRLYISP 156
Query: 696 NWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT-DRYIFVSLLSRDST 872
NW+CFH+ +FG+D K+ IP SV +IKK K A L+PN L I T T +Y+FVSLLSRDS
Sbjct: 157 NWLCFHASLFGRDIKVVIPVVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSV 216
Query: 873 YKLLKSVCGHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDEFSDLDGVVRQRRQDME 1052
Y +L+ VC HL+ PSS ++ + P E L+ ++ + +
Sbjct: 217 YDMLRRVCTHLQ---------PSSKKSLSVREFPE------EPECKSLEVLIPEMKWRKA 261
Query: 1053 GYSSSGSQTPESENSRDFHVTESQTVLNVSKGEAKPTRTDALVNRVPEGKAKSLPTHGQS 1232
S P++ + + + D +R P G ++
Sbjct: 262 CPVSRSLSVPDN--------------IPCIPQTSMDSTDDFFSSRKPLGSENAISEEKLE 307
Query: 1233 ELSGIVHRVKSQKCPTLHQILIFYAIVVCALIISTFYMRYRINTLEEQLGSLT--SSVDT 1406
E S R + +++L + +++C L++S+ Y+ +RI+ LE+QL SL +SV
Sbjct: 308 EES----RSNGELRHWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSLNWDASVPG 363
Query: 1407 HQ 1412
H+
Sbjct: 364 HR 365
>ref|XP_003127082.2| PREDICTED: GRAM domain-containing protein 1A isoform 1 [Sus scrofa].
Length = 713
Score = 104 bits (259), Expect = 2e-22
Identities = 60/156 (38%), Positives = 89/156 (57%)
Frame = +3
Query: 537 IERKKSSSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHS 716
I K S + + N F KLF +P E L ++CALQ+EIL QG+L++S+NWICF+S
Sbjct: 69 IRNSKMLSPTYKQRNEDFRKLFSKLPEAERLIVDYSCALQREILLQGRLYLSENWICFYS 128
Query: 717 KVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC 896
+F +T ISI VT +KK KTA L+PNA+ I T ++++ F S +RD + L+ +
Sbjct: 129 NIFRWETTISIQLKEVTCLKKEKTAKLIPNAIQICTESEKHFFTSFGARDRCFLLIFRL- 187
Query: 897 GHLENASIGNSPNPSSLENSFRADRPSSLPLDFNDE 1004
+NA + + +P L + S L L DE
Sbjct: 188 --WQNALLEKTLSPRELWHLVHQCYGSELGLTSEDE 221
>ref|XP_003132713.2| PREDICTED: GRAM domain-containing protein 1C-like, partial [Sus
scrofa].
Length = 486
Score = 95.9 bits (237), Expect = 8e-20
Identities = 45/107 (42%), Positives = 69/107 (64%)
Frame = +3
Query: 555 SSSSQDKANMHFHKLFLDVPTEEPLKQSFTCALQKEILYQGKLFVSDNWICFHSKVFGKD 734
SSS+ N + K F +P E L + CALQ++IL QG+L++S+NW+CF+S +F +
Sbjct: 61 SSSTYKDRNEEYKKQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWE 120
Query: 735 TKISIPAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTY 875
T ISI ++T + K KTA L+PNA+ I T +++ F S +RD +Y
Sbjct: 121 TTISIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSY 167
>ref|XP_003130028.2| PREDICTED: GRAM domain-containing protein 1B [Sus scrofa].
Length = 966
Score = 94.4 bits (233), Expect = 2e-19
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Frame = +3
Query: 474 DGASLASEKNDCKTESKNDAKIERKKSS-----SSSQDKANMHFHKLFLDVPTEEPLKQS 638
DG ++ + +D ++ K +K S S + + N F KLF +P E L
Sbjct: 53 DGDTMEEKGSD--HSGRSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDSERLIVD 110
Query: 639 FTCALQKEILYQGKLFVSDNWICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALII 818
++CALQ++IL QG+L++S+NWICF+S +F +T +++ + + K KTA L+PNA+ +
Sbjct: 111 YSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQV 170
Query: 819 ATVTDRYIFVSLLSRDSTYKLL 884
T ++++ F S +RD TY ++
Sbjct: 171 CTDSEKHFFTSFGARDRTYMMM 192
>ref|XP_003129230.2| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 9 [Sus
scrofa].
Length = 869
Score = 60.1 bits (144), Expect = 5e-09
Identities = 33/108 (30%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + FH+LF +P EE L ++C+ K ++ QG +++S N +CF+S + G++ K+ I
Sbjct: 145 EAIVKFHRLF-GMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVI 203
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSV 893
+T ++K T LL+P+ + ++T + + F L+ + T+KL++ +
Sbjct: 204 RWVDITQLEKNAT-LLLPDVIQVSTRSSEHFFSVFLNINETFKLMEQL 250
>ref|XP_003124934.2| PREDICTED: TBC1 domain family member 8 [Sus scrofa].
Length = 1015
Score = 52.4 bits (124), Expect = 1e-06
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 22/199 (11%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQKEILY---QGKLFVSDNWICFHSKVFGKDTKI 743
+A F + F +P E L C+L G++F SD++ICF SK G K+
Sbjct: 281 RAQNEFFRAFFRLPRREKLHAVLDCSLWTPFSRCHTAGRMFASDSYICFASKEDGC-CKV 339
Query: 744 SIPAFSVTLIKKTKTALLVPNALIIATVTDR-YIFVSLLSRDSTYKLLKSVCGHLENASI 920
+P V I+K + L+P+ +II+ + + F+ L RDS L++S+ L+
Sbjct: 340 ILPLREVVSIEKMEDTSLLPSPIIISVRSKMAFQFIELRDRDS---LVESLLVRLKQV-- 394
Query: 921 GNSPNPSSLENSFRADRPSSLPLDFN----DEFSDLDGVVRQRRQDME------------ 1052
++ +P + S D S + N F L+ + Q ++ E
Sbjct: 395 -HADHPVRYDTSRDEDVTSPVFYSANMCSDHRFGGLETLSSQNNEEREKETNPRLHPEAL 453
Query: 1053 --GYSSSGSQTPESENSRD 1103
+ SGSQ+P+S SR+
Sbjct: 454 VAAFRQSGSQSPDSRLSRE 472
>ref|XP_003123695.1| PREDICTED: TBC1 domain family member 9B isoform 1 [Sus scrofa].
Length = 1234
Score = 50.1 bits (118), Expect = 5e-06
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Frame = +3
Query: 573 KANMHFHKLFLDVPTEEPLKQSFTCALQK-EILYQGKLFVSDNWICFHSKVFGKDTKISI 749
+A + K F +P E L ++C+ K + QG L+++ N +CF+S + GK+ + +
Sbjct: 139 EAELKMRKQF-GMPEGEKLVNYYSCSYWKGHVPRQGWLYLTVNHLCFYSFLLGKEVSLVV 197
Query: 750 PAFSVTLIKKTKTALLVPNALIIATVTDRYIFVSLLSRDSTYKLLKSVC----------- 896
VT ++K T LL P ++ + T F L+ T+KL++ +
Sbjct: 198 RWVDVTRLEKNAT-LLFPESIRVDTRDQELFFSMFLNITETFKLMEQLANLAMRQLLDSE 256
Query: 897 GHLENASIGNSPNPSSLENSFRAD 968
G LE+ ++ P P ++ + D
Sbjct: 257 GFLEDKALPRPPQPHKKISALKRD 280
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,684,915
Number of extensions: 1470345
Number of successful extensions: 6354
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6335
Number of HSP's successfully gapped: 12
Length of query: 687
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 581
Effective length of database: 8,704,850
Effective search space: 5057517850
Effective search space used: 5057517850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002039
(2063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892708.2| Sus scrofa unplaced genomic scaffold ChrUScaf594 1001 0.0
Sscrofa_Chr02 426 e-116
>gb|GL892708.2| Sus scrofa unplaced genomic scaffold ChrUScaf594
Length = 49360
Score = 1001 bits (505), Expect = 0.0
Identities = 524/530 (98%), Gaps = 3/530 (0%)
Strand = Plus / Minus
Query: 1509 aagatacaaaacaacttacaaaagctgctcgagaatggtgactgaccgcccagatggctt 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18967 aagatacaaaacaacttacaaaagctgctcgagaatggtgactgaccgcccagatggctt 18908
Query: 1569 gggccaatggaatacctcgcactttccctttgaagtaggtgctccccgaggcgttctggt 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18907 gggccaatggaatacctcgcactttccctttgaagtaggtgctccccgaggcgttctggt 18848
Query: 1629 ggagcgcccccttctggccagaagagc---gagcagacgggcgtccccagcctcgcttgc 1685
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 18847 ggagcgcccccttctggccagaagagnagtgagcagacggccgtccccagcctcgcttgc 18788
Query: 1686 ccctggtggtctccggctcagcaaaacggaaagggaataattttggttcccgtgcaataa 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18787 ccctggtggtctccggctcagcaaaacggaaagggaataattttggttcccgtgcaataa 18728
Query: 1746 aagtggaccttcactctctgaggaagttttcaatgctgctgcctgaagaaaacagaccca 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18727 aagtggaccttcactctctgaggaagttttcaatgctgctgcctgaagaaaacagaccca 18668
Query: 1806 tctctggaggtctcgggaagggcccagtggacatccttggatggttgtgatttagcaggt 1865
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18667 tctctggaggtctcaggaagggcccagtggacatccttggatggttgtgatttagcaggt 18608
Query: 1866 tcatgggactgtcagcaaatacactccactccaggccttttgagccctctctgccctcct 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18607 tcatgggactgtcagcaaatacactccactccaggccttttgagccctctctgccctcct 18548
Query: 1926 ttgctctcctgtacacccctcttaaccgacctgcaaactaagggatggatagatcatgtg 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18547 ttgctctcctgtacacccctcttaaccgacctgcaaactaagggatggatagatcatgtg 18488
Query: 1986 ccaacaaacttgattgatggagttctttaaagaattagccatggctctcc 2035
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18487 ccaacaaacttgattgatggagttctttaaagaattagccatggctctcc 18438
Score = 244 bits (123), Expect = 2e-61
Identities = 126/127 (99%)
Strand = Plus / Minus
Query: 1100 agatttccacgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 1159
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27407 agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 27348
Query: 1160 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27347 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 27288
Query: 1220 acatggt 1226
|||||||
Sbjct: 27287 acatggt 27281
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 337 gctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagccc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46512 gctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagccc 46453
Query: 397 tgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccctgc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46452 tgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccctgc 46393
Query: 457 ggt 459
|||
Sbjct: 46392 ggt 46390
Score = 226 bits (114), Expect = 4e-56
Identities = 117/118 (99%)
Strand = Plus / Minus
Query: 984 cctctggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 1043
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28066 cctcaggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 28007
Query: 1044 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28006 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 27949
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 457 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41922 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 41863
Query: 517 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41862 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 41809
Score = 206 bits (104), Expect = 4e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 637 gttttacctgtgccctgcaaaaagaaatattataccaggggaagctctttgtatcagaca 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37878 gttttacctgtgccctgcaaaaagaaatattataccaggggaagctctttgtatcagaca 37819
Query: 697 actggatttgttttcattccaaggtctttggaaaagacactaag 740
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37818 actggatttgttttcattccaaggtctttggaaaagacactaag 37775
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 739 agatctcgattccagctttctcggtaaccctgataaagaaaaccaaaactgcccttctgg 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33243 agatctcgattccagctttctcggtaaccctgataaagaaaaccaaaactgcccttctgg 33184
Query: 799 tgccaaatgccctgattatagcgacggtcacagacagg 836
||||||||||||||||||||||||||||||||||||||
Sbjct: 33183 tgccaaatgccctgattatagcgacggtcacagacagg 33146
Score = 192 bits (97), Expect = 5e-46
Identities = 103/105 (98%)
Strand = Plus / Minus
Query: 1313 tgtctgcgcactaatcatctcgaccttctacatgagatacagaattaatacgctggagga 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25595 tgtctgcgcactaatcatctcgaccttctacatgagatacagaattaatacgctggagga 25536
Query: 1373 gcagctggggtcactcacctcctctgtggacacccaccagcccga 1417
||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 25535 acagctggggtcactcacctccactgtggacacccaccagcccga 25491
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1418 acagccagccccctccggcctgggatcacaagtgcagttaaacgtggaagtcctctgcca 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21553 acagccagccccctccggcctgggatcacaagtgcagttaaacgtggaagtcctctgcca 21494
Query: 1478 agagcttacagccaacataatgagattggaaaag 1511
||||||||||||||||||||||||||||||||||
Sbjct: 21493 agagcttacagccaacataatgagattggaaaag 21460
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1224 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26682 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 26623
Query: 1284 caccagattcttatattctatgcaattgt 1312
|||||||||||||||||||||||||||||
Sbjct: 26622 caccagattcttatattctatgcaattgt 26594
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 909 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31051 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 30992
Query: 969 cgcccttcatctctgcctctgg 990
||||||||||||||||||||||
Sbjct: 30991 cgcccttcatctctgcctctgg 30970
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 567 caggacaaagccaacatgcatttccacaagctgtttctggatgtccccacggaggaaccc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39204 caggacaaagccaacatgcatttccacaagctgtttctggatgtccccacggaggaaccc 39145
Query: 627 ctgaagcaaagt 638
||||||||||||
Sbjct: 39144 ctgaagcaaagt 39133
Score = 137 bits (69), Expect = 3e-29
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 836 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31238 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 31179
Query: 896 tggacatttagaa 908
|||||| ||||||
Sbjct: 31178 tggacacttagaa 31166
>Sscrofa_Chr02
|| Length = 162569375
Score = 426 bits (215), Expect = e-116
Identities = 230/235 (97%)
Strand = Plus / Plus
Query: 1 tgtgagaattgagcaaggctgaaaggcagagactttcgcgttactggggaggaggagaaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134864005 tgtgagaattgagcaaggctgaaaggcagagactttcacgttactggggaggaggagaaa 134864064
Query: 61 tgagcccttgagtttatttcttggcgtagcgattgacaagggcacaatggtgaaaaagag 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 134864065 tgagcccttgagtttatttctcggcgtagcgattgacaagggcacaatggtgaaaaagag 134864124
Query: 121 gctgtcgtcatccagcgacacgacgtggaggtctgaggttccgggcggcccaagcaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 134864125 gctgtcgtcatccagcgacacgacgtggaggtctgaggttccgggcggcccgagcaaggt 134864184
Query: 181 gggcactgaggccccgcacagcccccctgacagccccggctcggtgtttctcagg 235
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 134864185 gggcaccgaggccccgcacagcgcccctgacagccccggctcggtgtttctcagg 134864239
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 337 gctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagccc 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134822799 gctcagaggctgagaacggtgtggaggagaaaaagaaggtctgcaggtcgccaacagccc 134822858
Query: 397 tgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccctgc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134822859 tgtcccctgccccgtccagcgaggccgagtctccagaccagaagagaatcatttccctgc 134822918
Query: 457 ggt 459
|||
Sbjct: 134822919 ggt 134822921
Score = 244 bits (123), Expect = 2e-61
Identities = 126/127 (99%)
Strand = Plus / Plus
Query: 1100 agatttccacgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 1159
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897635 agatttccatgtgacagaatcccagacagttctcaacgtgtccaagggagaagcaaaacc 134897694
Query: 1160 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897695 aactcggacagatgccctcgtgaacagagtgcctgaaggcaaagccaagagtcttcccac 134897754
Query: 1220 acatggt 1226
|||||||
Sbjct: 134897755 acatggt 134897761
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 457 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134847441 ggtccaaatccagctttgacggtgcctctttagcaagcgagaagaacgactgtaagacag 134847500
Query: 517 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134847501 aaagcaagaatgacgcgaagattgaaaggaaaaagtcctcctcatccagccagg 134847554
Score = 226 bits (114), Expect = 4e-56
Identities = 117/118 (99%)
Strand = Plus / Plus
Query: 984 cctctggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 1043
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134896976 cctcaggatttcaacgatgaattctcggatctggatggagtggttcggcaaagaaggcag 134897035
Query: 1044 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134897036 gacatggagggatacagcagttctggatctcagactcctgaatctgagaactctcgag 134897093
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 232 cagggctcttttattgccagatgaactcagctagctcaaacaagggacgtttaccgacgg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134923317 cagggctcttttattgccagatgaactcagctagctcaaacaagggacgtttaccgacgg 134923376
Query: 292 gattgtggacaatcccttggacaccaagggcagcaaagcaaatacg 337
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134923377 gattgtggacaatcccttggacaccaagggcagcaaagcaaatacg 134923422
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1224 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134898360 ggtcagtcggaactcagtggaattgtacacagagtaaagtctcagaaatgtccaactctc 134898419
Query: 1284 caccagattcttatattctatgcaattgt 1312
|||||||||||||||||||||||||||||
Sbjct: 134898420 caccagattcttatattctatgcaattgt 134898448
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 909 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134893676 aatgcaagcattggcaacagccccaatccgtcttcccttgaaaacagtttccgggcagac 134893735
Query: 969 cgcccttcatctctgcctctgg 990
||||||||||||||||||||||
Sbjct: 134893736 cgcccttcatctctgcctctgg 134893757
Score = 137 bits (69), Expect = 3e-29
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 836 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134893489 gtacatatttgtctccttactctccagagattcaacttacaaactgctaaaatctgtgtg 134893548
Query: 896 tggacatttagaa 908
|||||| ||||||
Sbjct: 134893549 tggacacttagaa 134893561
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 63,293,997
Number of extensions: 392
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 22
Length of query: 2063
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2041
Effective length of database: 2,808,408,574
Effective search space: 5731961899534
Effective search space used: 5731961899534
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)