Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013603.2| sphingosine 1-phosphate receptor 1 [Bos taur... 458 e-129
Alignment gi|NP_001094656.1| sphingosine 1-phosphate receptor 3 [Bos taur... 243 4e-64
Alignment gi|NP_001075010.1| sphingosine 1-phosphate receptor 2 [Bos taur... 199 7e-51
Alignment gi|NP_001179404.1| sphingosine 1-phosphate receptor 5 [Bos taur... 193 4e-49
Alignment gi|XP_002688888.1| PREDICTED: endothelial differentiation, sphi... 193 4e-49
Alignment gi|NP_776472.1| lysophosphatidic acid receptor 1 [Bos taurus]. 165 1e-40
Alignment gi|NP_001179164.1| lysophosphatidic acid receptor 2 [Bos taurus]. 147 2e-35
Alignment gi|XP_002688562.1| PREDICTED: lysophosphatidic acid receptor 2-... 147 2e-35
Alignment gi|NP_001179670.2| lysophosphatidic acid receptor 3 [Bos taurus]. 140 5e-33
Alignment gi|XP_002686356.1| PREDICTED: lysophosphatidic acid receptor 3-... 140 5e-33
>ref|NP_001013603.2| sphingosine 1-phosphate receptor 1 [Bos taurus].
Length = 382
Score = 458 bits (1178), Expect = e-129
Identities = 232/247 (93%), Positives = 233/247 (94%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS
Sbjct: 127 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 186
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
TLPSCSTVLPLYHKHYI +IVILYCRIYSLVRTRSRRLTFRKNISKASR
Sbjct: 187 TLPSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASR 246
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT
Sbjct: 247 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NPIIYTLSNKEMRRAFVRIMSCCKCPS DSA KFTRPIIAGMEFSRSKSDNSSHPQKDDG
Sbjct: 307 NPIIYTLSNKEMRRAFVRIMSCCKCPSRDSASKFTRPIIAGMEFSRSKSDNSSHPQKDDG 366
Query: 726 DNPETIM 746
DNPETIM
Sbjct: 367 DNPETIM 373
>ref|NP_001094656.1| sphingosine 1-phosphate receptor 3 [Bos taurus].
Length = 378
Score = 243 bits (620), Expect = 4e-64
Identities = 130/248 (52%), Positives = 167/248 (67%), Gaps = 3/248 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL AS SLLAIAIER++TM+KM+ ++ + + R FLLI CW+I+ LG LPI+GWNC+
Sbjct: 121 ALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFSLGALPILGWNCLH 180
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
LP CST+LPLY K YI IVILY RIY LV++ SRR+ N
Sbjct: 181 NLPDCSTILPLYSKKYIAFCISIFMAILVTIVILYARIYFLVKSSSRRVASPHN------ 234
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SE+S+ALL+TV+IV+ VFIACW+PLFIL L+DV CKVK C +LF+ ++F+VLAVLNS
Sbjct: 235 -SERSMALLRTVVIVVSVFIACWSPLFILFLVDVACKVKECAVLFKAQWFIVLAVLNSAM 293
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSK---SDNSSHPQK 716
NPIIYTL++KEMRRAF R++ C G + PI ++ SRSK S+NSS K
Sbjct: 294 NPIIYTLASKEMRRAFFRLVCTCLV---RGRGAHSSPIQPALDPSRSKSSGSNNSSPSPK 350
Query: 717 DDGDNPET 740
D P+T
Sbjct: 351 SKEDLPQT 358
>ref|NP_001075010.1| sphingosine 1-phosphate receptor 2 [Bos taurus].
Length = 352
Score = 199 bits (506), Expect = 7e-51
Identities = 103/207 (49%), Positives = 136/207 (65%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER++ + K+KL+ R LLI+A W+ISL+LGGLPI+GWNC+
Sbjct: 116 LSASVFSLLAIAIERHVAIAKVKLYGSDKSCRMLLLIAASWLISLVLGGLPILGWNCLGH 175
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY K Y+ AIV LY RIY +VR+ S+A +
Sbjct: 176 LEACSTVLPLYAKPYVLCVVTIFSVILSAIVALYIRIYCVVRS-----------SQADVA 224
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
+ ++LALLKTV IVLGVFI CW P F +LLLD C V+TC +L++ YF A LNS N
Sbjct: 225 APQTLALLKTVTIVLGVFIFCWLPAFSILLLDYACPVRTCPMLYQAHYFFAFATLNSLLN 284
Query: 549 PIIYTLSNKEMRRAFVRIMSCCKCPSG 629
P+IYT ++++RR +R + C + +G
Sbjct: 285 PVIYTWRSRDLRREVLRPLQCWRQAAG 311
>ref|NP_001179404.1| sphingosine 1-phosphate receptor 5 [Bos taurus].
Length = 399
Score = 193 bits (491), Expect = 4e-49
Identities = 111/255 (43%), Positives = 154/255 (60%), Gaps = 17/255 (6%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASV SLLAIA+ER +TM + S R R+ L +A W +SL+LG LP +GWNC+
Sbjct: 119 ALSASVLSLLAIALERLLTMERRGPAPASRRGRTLALAAAAWGLSLLLGLLPALGWNCLG 178
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFR----KNIS 353
L +CSTVLPLY K Y+ AI LY RIY VR+++RRL + S
Sbjct: 179 RLEACSTVLPLYAKAYVLFCVLAFLGILAAICALYARIYCQVRSKARRLRAHPRTGEGAS 238
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R + +SLALL+T+ +VL F+ACW PLF+LLLLDV C + C +L + + FL LA+
Sbjct: 239 MRARHTPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARACPVLLQADPFLGLAMA 298
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIM-----SCCKCPSGD--------SAGKFTRPIIAGME 674
NS NPIIYT +N ++R A +R++ CC+ P ++G R + G++
Sbjct: 299 NSLLNPIIYTFTNLDLRHALLRLVCCNRGPCCRDPGASRRPGSAPGASGDLHRWLPPGLD 358
Query: 675 FSRSKSDNSSHPQKD 719
S S+S+ SS PQ+D
Sbjct: 359 GSSSRSERSS-PQRD 372
>ref|XP_002688888.1| PREDICTED: endothelial differentiation, sphingolipid
G-protein-coupled receptor, 8-like [Bos taurus].
Length = 399
Score = 193 bits (491), Expect = 4e-49
Identities = 111/255 (43%), Positives = 154/255 (60%), Gaps = 17/255 (6%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASV SLLAIA+ER +TM + S R R+ L +A W +SL+LG LP +GWNC+
Sbjct: 119 ALSASVLSLLAIALERLLTMERRGPAPASRRGRTLALAAAAWGLSLLLGLLPALGWNCLG 178
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFR----KNIS 353
L +CSTVLPLY K Y+ AI LY RIY VR+++RRL + S
Sbjct: 179 RLEACSTVLPLYAKAYVLFCVLAFLGILAAICALYARIYCQVRSKARRLRAHPRTGEGAS 238
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R + +SLALL+T+ +VL F+ACW PLF+LLLLDV C + C +L + + FL LA+
Sbjct: 239 MRARHTPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARACPVLLQADPFLGLAMA 298
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIM-----SCCKCPSGD--------SAGKFTRPIIAGME 674
NS NPIIYT +N ++R A +R++ CC+ P ++G R + G++
Sbjct: 299 NSLLNPIIYTFTNLDLRHALLRLVCCNRGPCCRDPGASRRPGSAPGASGDLHRWLPPGLD 358
Query: 675 FSRSKSDNSSHPQKD 719
S S+S+ SS PQ+D
Sbjct: 359 GSSSRSERSS-PQRD 372
>ref|NP_776472.1| lysophosphatidic acid receptor 1 [Bos taurus].
Length = 364
Score = 165 bits (418), Expect = 1e-40
Identities = 89/230 (38%), Positives = 135/230 (58%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ SV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 131 SLTVSVANLLAIAIERHITVFRMQLHARMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 191 DIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 248
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 249 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCP--------SGDSAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + S SA I+AG+
Sbjct: 307 NPIIYSYRDKEMSATFRQILCCQRSENTSGPTEGSDRSASSLNHTILAGV 356
>ref|NP_001179164.1| lysophosphatidic acid receptor 2 [Bos taurus].
Length = 351
Score = 147 bits (372), Expect = 2e-35
Identities = 84/218 (38%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R +LI WV +L LG LP W+C+
Sbjct: 114 SLTASVATLLAIAVERHRSVMAVQLHSRLPPGRVIMLIVGVWVAALGLGLLPAHSWHCLC 173
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L CS + PL + Y+ +V +Y RI+ VR R +R+ +++S R
Sbjct: 174 ALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMA--EHVSCHPR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLD-VGCKVKTCDILFRTEYFLVLAVLNSG 542
E +L L+KTV+I+LG F+ CW P ++LLLD +GC K+C++L +YFL+LA NS
Sbjct: 232 YRETTLNLVKTVVIILGAFVVCWTPGQVVLLLDGLGC--KSCNVLAVEKYFLLLAEANSL 289
Query: 543 TNPIIYTLSNKEMRRAFVRIMSCCKC--PSGDSAGKFT 650
N ++Y+ + EMRR F R++ CC+C PS + ++T
Sbjct: 290 VNAVVYSCRDAEMRRTFRRLL-CCRCLRPSTHESVRYT 326
>ref|XP_002688562.1| PREDICTED: lysophosphatidic acid receptor 2-like [Bos taurus].
Length = 351
Score = 147 bits (372), Expect = 2e-35
Identities = 84/218 (38%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R +LI WV +L LG LP W+C+
Sbjct: 114 SLTASVATLLAIAVERHRSVMAVQLHSRLPPGRVIMLIVGVWVAALGLGLLPAHSWHCLC 173
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L CS + PL + Y+ +V +Y RI+ VR R +R+ +++S R
Sbjct: 174 ALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMA--EHVSCHPR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLD-VGCKVKTCDILFRTEYFLVLAVLNSG 542
E +L L+KTV+I+LG F+ CW P ++LLLD +GC K+C++L +YFL+LA NS
Sbjct: 232 YRETTLNLVKTVVIILGAFVVCWTPGQVVLLLDGLGC--KSCNVLAVEKYFLLLAEANSL 289
Query: 543 TNPIIYTLSNKEMRRAFVRIMSCCKC--PSGDSAGKFT 650
N ++Y+ + EMRR F R++ CC+C PS + ++T
Sbjct: 290 VNAVVYSCRDAEMRRTFRRLL-CCRCLRPSTHESVRYT 326
>ref|NP_001179670.2| lysophosphatidic acid receptor 3 [Bos taurus].
Length = 353
Score = 140 bits (352), Expect = 5e-33
Identities = 68/202 (33%), Positives = 123/202 (60%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++++M++H+ + R LLI W I++ +G +P +GWNC+
Sbjct: 112 SLTASLTNLLVIAVERHMSIMRMRVHSNLTKKRVTLLILFIWAIAIFMGAVPTLGWNCLC 171
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS++ P+Y + Y+ +V++Y RIY V+ ++ L+ + S + R
Sbjct: 172 DISACSSLAPIYSRSYLIFWTVSNLMAFFIMVVVYLRIYMYVKRKTNVLSPHTSGSISRR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + L+KTV+ VLG F+ CW P ++LLLD G C++ +FL+LA+ NS
Sbjct: 232 RT--PMKLMKTVMTVLGAFVVCWTPGLVVLLLD-GLNCTRCNVQHVKRWFLLLALCNSVM 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSC 611
NPIIY+ +++M R++ C
Sbjct: 289 NPIIYSYKDEDMYSTMKRMLCC 310
>ref|XP_002686356.1| PREDICTED: lysophosphatidic acid receptor 3-like [Bos taurus].
Length = 392
Score = 140 bits (352), Expect = 5e-33
Identities = 68/202 (33%), Positives = 123/202 (60%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++++M++H+ + R LLI W I++ +G +P +GWNC+
Sbjct: 151 SLTASLTNLLVIAVERHMSIMRMRVHSNLTKKRVTLLILFIWAIAIFMGAVPTLGWNCLC 210
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS++ P+Y + Y+ +V++Y RIY V+ ++ L+ + S + R
Sbjct: 211 DISACSSLAPIYSRSYLIFWTVSNLMAFFIMVVVYLRIYMYVKRKTNVLSPHTSGSISRR 270
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + L+KTV+ VLG F+ CW P ++LLLD G C++ +FL+LA+ NS
Sbjct: 271 RT--PMKLMKTVMTVLGAFVVCWTPGLVVLLLD-GLNCTRCNVQHVKRWFLLLALCNSVM 327
Query: 546 NPIIYTLSNKEMRRAFVRIMSC 611
NPIIY+ +++M R++ C
Sbjct: 328 NPIIYSYKDEDMYSTMKRMLCC 349
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,760,140
Number of extensions: 1880108
Number of successful extensions: 9143
Number of sequences better than 1.0e-05: 109
Number of HSP's gapped: 8872
Number of HSP's successfully gapped: 111
Length of query: 627
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 519
Effective length of database: 14,107,870
Effective search space: 7321984530
Effective search space used: 7321984530
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547259.2| PREDICTED: similar to endothelial differentiati... 441 e-123
Alignment gi|XP_541315.2| PREDICTED: similar to endothelial differentiati... 240 4e-63
Alignment gi|XP_542076.1| PREDICTED: similar to Sphingosine 1-phosphate r... 206 8e-53
Alignment gi|XP_854094.1| PREDICTED: similar to endothelial differentiati... 181 3e-45
Alignment gi|XP_532031.2| PREDICTED: similar to endothelial differentiati... 168 2e-41
Alignment gi|XP_853534.1| PREDICTED: similar to endothelial differentiati... 168 2e-41
Alignment gi|XP_541918.2| PREDICTED: similar to Lysophosphatidic acid rec... 148 2e-35
Alignment gi|XP_854902.1| PREDICTED: similar to Sphingosine 1-phosphate r... 141 2e-33
Alignment gi|XP_547308.2| PREDICTED: similar to Lysophosphatidic acid rec... 141 2e-33
Alignment gi|XP_544470.1| PREDICTED: similar to Probable G-protein couple... 94 3e-19
>ref|XP_547259.2| PREDICTED: similar to endothelial differentiation, sphingolipid
G-protein-coupled receptor, 1 [Canis familiaris].
Length = 382
Score = 441 bits (1133), Expect = e-123
Identities = 220/247 (89%), Positives = 226/247 (91%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASVFSLLAIAIERYITMLKMKLHNGSN FRSFLLISACWVISL+LGGLPIMGWNCI
Sbjct: 127 ALSASVFSLLAIAIERYITMLKMKLHNGSNSFRSFLLISACWVISLVLGGLPIMGWNCIG 186
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L SCSTVLPLYHKHYI AIVILYCRIYSLVRTRSRRLTFRKNISKASR
Sbjct: 187 ALASCSTVLPLYHKHYILFCTTVFTLLLLAIVILYCRIYSLVRTRSRRLTFRKNISKASR 246
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SSEKSLALLKTVIIVL VFIACWAPLFILLLLDVGCKVKTCDILFR EYFLVLAVLNSGT
Sbjct: 247 SSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGT 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NPIIYTL+NKEMRRAF+RI+SCCKCP GD AGKF RPIIAG+EFSRSKSDNSSHPQKDDG
Sbjct: 307 NPIIYTLTNKEMRRAFIRILSCCKCPGGDPAGKFKRPIIAGVEFSRSKSDNSSHPQKDDG 366
Query: 726 DNPETIM 746
DNPET+M
Sbjct: 367 DNPETVM 373
>ref|XP_541315.2| PREDICTED: similar to endothelial differentiation, sphingolipid
G-protein-coupled receptor, 3 [Canis familiaris].
Length = 382
Score = 240 bits (612), Expect = 4e-63
Identities = 123/244 (50%), Positives = 162/244 (66%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL AS SLLAIAIER++TM+KM+ ++ + + R FLLI CW+I+ LG LPI+GWNC+
Sbjct: 125 ALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFSLGALPILGWNCLH 184
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
LP CST+LPLY K YI IVILY RIY LV++ SRR+ N
Sbjct: 185 NLPDCSTILPLYSKRYIAFCISIFTAILVTIVILYARIYFLVKSSSRRVASPHN------ 238
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SE+S+ALL+TV+IV+ VFIACW+PLFIL L+DV C+VK C ILF+ ++F+VLAV+NS
Sbjct: 239 -SERSMALLRTVVIVVSVFIACWSPLFILFLVDVACRVKQCAILFKAQWFIVLAVMNSAM 297
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NP+IYTL++KEMRRAF R++ C + T+P + S S+NSS K
Sbjct: 298 NPVIYTLASKEMRRAFFRLVCTCLVRRWGARSSPTQPALDPSRSKSSGSNNSSPSPKSKE 357
Query: 726 DNPE 737
D P+
Sbjct: 358 DPPQ 361
>ref|XP_542076.1| PREDICTED: similar to Sphingosine 1-phosphate receptor Edg-5 (S1P
receptor Edg-5) (Endothelial differentiation G-protein
coupled receptor 5) (Sphingosine 1-phosphate receptor 2)
(S1P2) [Canis familiaris].
Length = 352
Score = 206 bits (523), Expect = 8e-53
Identities = 105/207 (50%), Positives = 135/207 (65%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER++ + K+KL+ R LLI A W+IS+ LGGLPI+GWNC+
Sbjct: 116 LSASVFSLLAIAIERHVAIAKVKLYGSDKSCRMLLLIGASWLISVALGGLPILGWNCLGH 175
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY KHY+ AIV LY RIY +VR+ S+A +
Sbjct: 176 LEACSTVLPLYTKHYVLCVVTIFSVILLAIVALYVRIYCVVRS-----------SQADVA 224
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
++LALLKTV IVLGVFI CW P F +LLLD C V++C IL++ YF A LNS N
Sbjct: 225 GPQTLALLKTVTIVLGVFIVCWLPAFSILLLDYACPVRSCPILYKAHYFFAFATLNSLLN 284
Query: 549 PIIYTLSNKEMRRAFVRIMSCCKCPSG 629
P+IYT ++++RR +R + CCK +G
Sbjct: 285 PVIYTWRSRDLRREVLRPLQCCKQAAG 311
>ref|XP_854094.1| PREDICTED: similar to endothelial differentiation, sphingolipid
G-protein-coupled receptor, 8 isoform 1 [Canis
familiaris].
Length = 398
Score = 181 bits (458), Expect = 3e-45
Identities = 98/210 (46%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+ASV SLLAIA+ER +TM + S R R+ L A W +SL LG LP +GWNC+
Sbjct: 118 ALAASVLSLLAIALERRLTMARRGPAPASRRGRTLALAGAAWGVSLFLGLLPALGWNCLG 177
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRK----NIS 353
L SCSTVLPLY K Y+ I LY RIY VR +RRL R S
Sbjct: 178 RLDSCSTVLPLYAKAYVLFCVLAFLGILATICALYGRIYCQVRANARRLRERPGASGGAS 237
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R +SLALL+T+ +VL F+ CW PLF+LLL DV C + C +L + + FL LA+
Sbjct: 238 TRARRPPRSLALLRTLSLVLLAFLMCWGPLFLLLLFDVACPARACPVLLQADPFLGLAMA 297
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIMSCCKCP 623
NS NPIIYT +N+++R A VR++ C + P
Sbjct: 298 NSLLNPIIYTFTNRDLRHALVRLLCCGRRP 327
>ref|XP_532031.2| PREDICTED: similar to endothelial differentiation, lysophosphatidic
acid G-protein-coupled receptor, 2 isoform 1 [Canis
familiaris].
Length = 346
Score = 168 bits (425), Expect = 2e-41
Identities = 90/230 (39%), Positives = 136/230 (59%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 113 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 172
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 173 DIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 230
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 231 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGD--------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + S SA I+AG+
Sbjct: 289 NPIIYSYRDKEMSATFRQILCCQRSDSTSGPTEGSDRSASSLNHTILAGV 338
>ref|XP_853534.1| PREDICTED: similar to endothelial differentiation, lysophosphatidic
acid G-protein-coupled receptor, 2 isoform 2 [Canis
familiaris].
Length = 346
Score = 168 bits (425), Expect = 2e-41
Identities = 90/230 (39%), Positives = 136/230 (59%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 113 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 172
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 173 DIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 230
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 231 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGD--------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + S SA I+AG+
Sbjct: 289 NPIIYSYRDKEMSATFRQILCCQRSDSTSGPTEGSDRSASSLNHTILAGV 338
>ref|XP_541918.2| PREDICTED: similar to Lysophosphatidic acid receptor Edg-4 (LPA
receptor 2) (LPA-2) [Canis familiaris].
Length = 351
Score = 148 bits (374), Expect = 2e-35
Identities = 82/206 (39%), Positives = 128/206 (62%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R R +LI WV +L LG LP W+C+
Sbjct: 114 SLTASVATLLAIAVERHRSVMAVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLC 173
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L CS + PL + Y+ +V +Y RI+ VR R +R+ +++S R
Sbjct: 174 ALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMA--EHVSCHPR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLD-VGCKVKTCDILFRTEYFLVLAVLNSG 542
E +L+L+KTV+I+LG F+ CW P ++LLLD +GC K+C++L +YFL+LA NS
Sbjct: 232 YRETTLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGC--KSCNVLAVEKYFLLLAEANSL 289
Query: 543 TNPIIYTLSNKEMRRAFVRIMSCCKC 620
N ++Y+ + EMRR F R++ CC C
Sbjct: 290 VNAVVYSCRDAEMRRTFRRLL-CCLC 314
>ref|XP_854902.1| PREDICTED: similar to Sphingosine 1-phosphate receptor Edg-6 (S1P
receptor Edg-6) (Endothelial differentiation G-protein
coupled receptor 6) (Sphingosine 1-phosphate receptor 4)
(S1P4) [Canis familiaris].
Length = 383
Score = 141 bits (356), Expect = 2e-33
Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 2/240 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNG-SNRFRSFLLISACWVISLILGGLPIMGWNCI 182
AL+AS FSLL A ER+ TM++ +G S R R + I CW+++ +LG LP++GWNC+
Sbjct: 129 ALAASTFSLLFTAGERFATMVRPVAESGASKRGRVYGFIGLCWLLAALLGLLPLLGWNCV 188
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
P CS++LPLY K YI AI+ LY I+ +VR ++ + +
Sbjct: 189 CAFPRCSSLLPLYSKAYILFCVGVFACILAAIMALYGAIFRVVRANGQK-------APRA 241
Query: 363 RSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFR-TEYFLVLAVLNS 539
+ K+ LLKTV+++L F+ CW PLF LLL DV R ++ L LAVLNS
Sbjct: 242 PARRKARRLLKTVLMILLAFVVCWGPLFGLLLADVFSSTDWAQEYLRGMDWILALAVLNS 301
Query: 540 GTNPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKD 719
NP+IY+ ++E+ +A + + CC C G R +A + ++S + +SS +D
Sbjct: 302 AVNPLIYSFRSREVCQAVLGFL-CCGCLRLGLRG--PRDCLAQVTEAQSSTTDSSLRPRD 358
>ref|XP_547308.2| PREDICTED: similar to Lysophosphatidic acid receptor Edg-7 (LPA
receptor 3) (LPA-3) [Canis familiaris].
Length = 388
Score = 141 bits (355), Expect = 2e-33
Identities = 80/238 (33%), Positives = 140/238 (58%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++++M++H+ + R LLI W I++ +G +P +GWNC+
Sbjct: 146 SLTASLTNLLVIAVERHMSIMRMRVHSNLTKKRVTLLILFVWAIAIFMGAVPTLGWNCLC 205
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS++ P+Y + Y+ +V++Y RIY V+ ++ L+ + S + R
Sbjct: 206 DISACSSLAPIYSRSYLIFWTVSNLVAFFIMVVVYLRIYMYVKRKTNVLSPHTSGSISRR 265
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + L+KTV+ VLG F+ CW P ++LLLD G C + +FL+LA+LNS
Sbjct: 266 RA--PMKLMKTVMTVLGAFVVCWTPGLVVLLLD-GLNCTQCGVQHVKRWFLLLALLNSVM 322
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKD 719
NPIIY+ +++M + ++ M CC +S + +R IA SR SD S ++D
Sbjct: 323 NPIIYSYKDEDM-YSTMKKMICCFSQEKNSERRPSR--IASTILSR--SDTGSQYKED 375
>ref|XP_544470.1| PREDICTED: similar to Probable G-protein coupled receptor GPR3
(ACCA orphan receptor) [Canis familiaris].
Length = 329
Score = 94.4 bits (233), Expect = 3e-19
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLK-MKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCI 182
A +ASV SLLAI ++RY+++ + ++ + R++++++ W +L LG LP++ WNC+
Sbjct: 118 AFTASVGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWGGALGLGLLPVLAWNCL 177
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
+C V PL K+++ ++ LY +I +V ++++ ++++ AS
Sbjct: 178 DARATCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPAS 236
Query: 363 R--SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLN 536
++ K +A T+ +VLG F ACW P + LL T L+ A N
Sbjct: 237 HYVATRKGIA---TLAVVLGAFAACWLPFTVYCLLGDAHSPS-----LYTYLTLLPATYN 288
Query: 537 SGTNPIIYTLSNKEMRRAFVRIMSCC 614
S NPIIY N+++++ I CC
Sbjct: 289 SMINPIIYAFRNQDVQKVLWAICCCC 314
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,743,509
Number of extensions: 1915223
Number of successful extensions: 7766
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 7598
Number of HSP's successfully gapped: 64
Length of query: 627
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 518
Effective length of database: 15,240,880
Effective search space: 7894775840
Effective search space used: 7894775840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001391.2| sphingosine 1-phosphate receptor 1 [Homo sapien... 444 e-124
Alignment gi|NP_005217.2| sphingosine 1-phosphate receptor 3 [Homo sapien... 243 6e-64
Alignment gi|NP_004221.3| sphingosine 1-phosphate receptor 2 [Homo sapien... 200 3e-51
Alignment gi|NP_001159687.1| sphingosine 1-phosphate receptor 5 [Homo sap... 196 5e-50
Alignment gi|NP_110387.1| sphingosine 1-phosphate receptor 5 [Homo sapien... 196 5e-50
Alignment gi|NP_476500.1| lysophosphatidic acid receptor 1 [Homo sapiens]. 168 1e-41
Alignment gi|NP_001392.2| lysophosphatidic acid receptor 1 [Homo sapiens]. 168 1e-41
Alignment gi|NP_004711.2| lysophosphatidic acid receptor 2 [Homo sapiens]. 145 1e-34
Alignment gi|NP_036284.1| lysophosphatidic acid receptor 3 [Homo sapiens]. 141 2e-33
Alignment gi|NP_003766.1| sphingosine 1-phosphate receptor 4 precursor [H... 137 3e-32
>ref|NP_001391.2| sphingosine 1-phosphate receptor 1 [Homo sapiens].
Length = 382
Score = 444 bits (1143), Expect = e-124
Identities = 224/247 (90%), Positives = 228/247 (92%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASVFSLLAIAIERYITMLKMKLHNGSN FR FLLISACWVISLILGGLPIMGWNCIS
Sbjct: 127 ALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCIS 186
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L SCSTVLPLYHKHYI +IVILYCRIYSLVRTRSRRLTFRKNISKASR
Sbjct: 187 ALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASR 246
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SSEKSLALLKTVIIVL VFIACWAPLFILLLLDVGCKVKTCDILFR EYFLVLAVLNSGT
Sbjct: 247 SSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGT 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NPIIYTL+NKEMRRAF+RIMSCCKCPSGDSAGKF RPIIAGMEFSRSKSDNSSHPQKD+G
Sbjct: 307 NPIIYTLTNKEMRRAFIRIMSCCKCPSGDSAGKFKRPIIAGMEFSRSKSDNSSHPQKDEG 366
Query: 726 DNPETIM 746
DNPETIM
Sbjct: 367 DNPETIM 373
>ref|NP_005217.2| sphingosine 1-phosphate receptor 3 [Homo sapiens].
Length = 378
Score = 243 bits (619), Expect = 6e-64
Identities = 124/245 (50%), Positives = 162/245 (66%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL AS SLLAIAIER++TM+KM+ ++ + R R FLLI CW+I+ LG LPI+GWNC+
Sbjct: 121 ALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCWLIAFTLGALPILGWNCLH 180
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
LP CST+LPLY K YI IVILY RIY LV++ SR++ N
Sbjct: 181 NLPDCSTILPLYSKKYIAFCISIFTAILVTIVILYARIYFLVKSSSRKVANHNN------ 234
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SE+S+ALL+TV+IV+ VFIACW+PLFIL L+DV C+V+ C ILF+ ++F+VLAVLNS
Sbjct: 235 -SERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRVQACPILFKAQWFIVLAVLNSAM 293
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NP+IYTL++KEMRRAF R++ C + +P + S S+NSSH K
Sbjct: 294 NPVIYTLASKEMRRAFFRLVCNCLVRGRGARASPIQPALDPSRSKSSSSNNSSHSPKVKE 353
Query: 726 DNPET 740
D P T
Sbjct: 354 DLPHT 358
>ref|NP_004221.3| sphingosine 1-phosphate receptor 2 [Homo sapiens].
Length = 353
Score = 200 bits (509), Expect = 3e-51
Identities = 102/201 (50%), Positives = 132/201 (65%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER++ + K+KL+ R LLI A W+ISL+LGGLPI+GWNC+
Sbjct: 116 LSASVFSLLAIAIERHVAIAKVKLYGSDKSCRMLLLIGASWLISLVLGGLPILGWNCLGH 175
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY KHY+ AIV LY RIY +VR+ S A +
Sbjct: 176 LEACSTVLPLYAKHYVLCVVTIFSIILLAIVALYVRIYCVVRS-----------SHADMA 224
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
+ ++LALLKTV IVLGVFI CW P F +LLLD C V +C IL++ YF ++ LNS N
Sbjct: 225 APQTLALLKTVTIVLGVFIVCWLPAFSILLLDYACPVHSCPILYKAHYFFAVSTLNSLLN 284
Query: 549 PIIYTLSNKEMRRAFVRIMSC 611
P+IYT ++++RR +R + C
Sbjct: 285 PVIYTWRSRDLRREVLRPLQC 305
>ref|NP_001159687.1| sphingosine 1-phosphate receptor 5 [Homo sapiens].
Length = 398
Score = 196 bits (499), Expect = 5e-50
Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 17/258 (6%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+ASV SLLAIA+ER +TM + S+R R+ + +A W +SL+LG LP +GWNC+
Sbjct: 118 ALTASVLSLLAIALERSLTMARRGPAPVSSRGRTLAMAAAAWGVSLLLGLLPALGWNCLG 177
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNI----S 353
L +CSTVLPLY K Y+ AI LY RIY VR +RRL R S
Sbjct: 178 RLDACSTVLPLYAKAYVLFCVLAFVGILAAICALYARIYCQVRANARRLPARPGTAGTTS 237
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R +SLALL+T+ +VL F+ACW PLF+LLLLDV C +TC +L + + FL LA+
Sbjct: 238 TRARRKPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARTCPVLLQADPFLGLAMA 297
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIM-----SCCKCPSG--------DSAGKFTRPIIAGME 674
NS NPIIYTL+N+++R A +R++ SC + PSG +++G R + G++
Sbjct: 298 NSLLNPIIYTLTNRDLRHALLRLVCCGRHSCGRDPSGSQQSASAAEASGGLRRCLPPGLD 357
Query: 675 FSRSKSDNSSHPQKDDGD 728
S S S+ SS PQ+D D
Sbjct: 358 GSFSGSERSS-PQRDGLD 374
>ref|NP_110387.1| sphingosine 1-phosphate receptor 5 [Homo sapiens].
Length = 398
Score = 196 bits (499), Expect = 5e-50
Identities = 115/258 (44%), Positives = 158/258 (61%), Gaps = 17/258 (6%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+ASV SLLAIA+ER +TM + S+R R+ + +A W +SL+LG LP +GWNC+
Sbjct: 118 ALTASVLSLLAIALERSLTMARRGPAPVSSRGRTLAMAAAAWGVSLLLGLLPALGWNCLG 177
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNI----S 353
L +CSTVLPLY K Y+ AI LY RIY VR +RRL R S
Sbjct: 178 RLDACSTVLPLYAKAYVLFCVLAFVGILAAICALYARIYCQVRANARRLPARPGTAGTTS 237
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R +SLALL+T+ +VL F+ACW PLF+LLLLDV C +TC +L + + FL LA+
Sbjct: 238 TRARRKPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARTCPVLLQADPFLGLAMA 297
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIM-----SCCKCPSG--------DSAGKFTRPIIAGME 674
NS NPIIYTL+N+++R A +R++ SC + PSG +++G R + G++
Sbjct: 298 NSLLNPIIYTLTNRDLRHALLRLVCCGRHSCGRDPSGSQQSASAAEASGGLRRCLPPGLD 357
Query: 675 FSRSKSDNSSHPQKDDGD 728
S S S+ SS PQ+D D
Sbjct: 358 GSFSGSERSS-PQRDGLD 374
>ref|NP_476500.1| lysophosphatidic acid receptor 1 [Homo sapiens].
Length = 364
Score = 168 bits (426), Expect = 1e-41
Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 131 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 191 DIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 248
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 249 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKC--PSGD------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + P+G SA I+AG+
Sbjct: 307 NPIIYSYRDKEMSATFRQILCCQRSENPTGPTEGSDRSASSLNHTILAGV 356
>ref|NP_001392.2| lysophosphatidic acid receptor 1 [Homo sapiens].
Length = 364
Score = 168 bits (426), Expect = 1e-41
Identities = 91/230 (39%), Positives = 138/230 (60%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 131 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 191 DIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 248
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 249 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKC--PSGD------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + P+G SA I+AG+
Sbjct: 307 NPIIYSYRDKEMSATFRQILCCQRSENPTGPTEGSDRSASSLNHTILAGV 356
>ref|NP_004711.2| lysophosphatidic acid receptor 2 [Homo sapiens].
Length = 351
Score = 145 bits (367), Expect = 1e-34
Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R R +LI WV +L LG LP W+C+
Sbjct: 114 SLTASVATLLAIAVERHRSVMAVQLHSRLPRGRVVMLIVGVWVAALGLGLLPAHSWHCLC 173
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L CS + PL + Y+ +V +Y RI+ VR R +R+ +++S R
Sbjct: 174 ALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMA--EHVSCHPR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLD-VGCKVKTCDILFRTEYFLVLAVLNSG 542
E +L+L+KTV+I+LG F+ CW P ++LLLD +GC ++C++L +YFL+LA NS
Sbjct: 232 YRETTLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGC--ESCNVLAVEKYFLLLAEANSL 289
Query: 543 TNPIIYTLSNKEMRRAFVRIMSCCKC 620
N +Y+ + EMRR F R++ CC C
Sbjct: 290 VNAAVYSCRDAEMRRTFRRLL-CCAC 314
>ref|NP_036284.1| lysophosphatidic acid receptor 3 [Homo sapiens].
Length = 353
Score = 141 bits (355), Expect = 2e-33
Identities = 68/202 (33%), Positives = 124/202 (61%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++++M++H+ + R LLI W I++ +G +P +GWNC+
Sbjct: 112 SLTASLTNLLVIAVERHMSIMRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLC 171
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS++ P+Y + Y+ +V++Y RIY V+ ++ L+ + S + R
Sbjct: 172 NISACSSLAPIYSRSYLVFWTVSNLMAFLIMVVVYLRIYVYVKRKTNVLSPHTSGSISRR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + L+KTV+ VLG F+ CW P ++LLLD G + C + +FL+LA+LNS
Sbjct: 232 RT--PMKLMKTVMTVLGAFVVCWTPGLVVLLLD-GLNCRQCGVQHVKRWFLLLALLNSVV 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSC 611
NPIIY+ +++M +++ C
Sbjct: 289 NPIIYSYKDEDMYGTMKKMICC 310
>ref|NP_003766.1| sphingosine 1-phosphate receptor 4 precursor [Homo sapiens].
Length = 384
Score = 137 bits (346), Expect = 3e-32
Identities = 79/207 (38%), Positives = 118/207 (57%), Gaps = 2/207 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRF-RSFLLISACWVISLILGGLPIMGWNCI 182
AL+AS FSLL A ER+ TM++ +G+ + R + I CW+++ +LG LP++GWNC+
Sbjct: 128 ALAASTFSLLFTAGERFATMVRPVAESGATKTSRVYGFIGLCWLLAALLGMLPLLGWNCL 187
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
CS++LPLY K YI I+ LY I+ LV+ ++ +
Sbjct: 188 CAFDRCSSLLPLYSKRYILFCLVIFAGVLATIMGLYGAIFRLVQASGQK-------APRP 240
Query: 363 RSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDV-GCKVKTCDILFRTEYFLVLAVLNS 539
+ K+ LLKTV+++L F+ CW PLF LLL DV G + + L ++ L LAVLNS
Sbjct: 241 AARRKARRLLKTVLMILLAFLVCWGPLFGLLLADVFGSNLWAQEYLRGMDWILALAVLNS 300
Query: 540 GTNPIIYTLSNKEMRRAFVRIMSCCKC 620
NPIIY+ ++E+ RA + + CC C
Sbjct: 301 AVNPIIYSFRSREVCRAVLSFL-CCGC 326
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,358,404
Number of extensions: 1878458
Number of successful extensions: 7517
Number of sequences better than 1.0e-05: 96
Number of HSP's gapped: 7271
Number of HSP's successfully gapped: 97
Length of query: 627
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 518
Effective length of database: 14,704,088
Effective search space: 7616717584
Effective search space used: 7616717584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031927.2| sphingosine 1-phosphate receptor 1 [Mus musculu... 437 e-122
Alignment gi|NP_034231.1| sphingosine 1-phosphate receptor 3 [Mus musculu... 240 3e-63
Alignment gi|NP_034463.2| sphingosine 1-phosphate receptor 2 [Mus musculu... 198 1e-50
Alignment gi|NP_444420.1| sphingosine 1-phosphate receptor 5 [Mus musculu... 190 3e-48
Alignment gi|NP_766577.1| lysophosphatidic acid receptor 1 [Mus musculus]. 167 3e-41
Alignment gi|NP_034466.2| lysophosphatidic acid receptor 1 [Mus musculus]. 167 3e-41
Alignment gi|NP_064412.2| lysophosphatidic acid receptor 2 [Mus musculus]. 148 1e-35
Alignment gi|NP_034232.1| sphingosine 1-phosphate receptor 4 [Mus musculu... 144 2e-34
Alignment gi|NP_075359.1| lysophosphatidic acid receptor 3 [Mus musculus]. 143 5e-34
Alignment gi|NP_032180.1| G-protein coupled receptor 3 [Mus musculus]. 96 1e-19
>ref|NP_031927.2| sphingosine 1-phosphate receptor 1 [Mus musculus].
Length = 382
Score = 437 bits (1123), Expect = e-122
Identities = 219/247 (88%), Positives = 227/247 (91%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASVFSLLAIAIERYITMLKMKLHNGSN RSFLLISACWVISLILGGLPIMGWNCIS
Sbjct: 127 ALSASVFSLLAIAIERYITMLKMKLHNGSNSSRSFLLISACWVISLILGGLPIMGWNCIS 186
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+L SCSTVLPLYHKHYI +IVILYCRIYSLVRTRSRRLTFRKNISKASR
Sbjct: 187 SLSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRSRRLTFRKNISKASR 246
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SSEKSLALLKTVIIVL VFIACWAPLFILLLLDVGCK KTCDIL++ EYFLVLAVLNSGT
Sbjct: 247 SSEKSLALLKTVIIVLSVFIACWAPLFILLLLDVGCKAKTCDILYKAEYFLVLAVLNSGT 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NPIIYTL+NKEMRRAF+RI+SCCKCP+GDSAGKF RPII GMEFSRSKSDNSSHPQKDDG
Sbjct: 307 NPIIYTLTNKEMRRAFIRIVSCCKCPNGDSAGKFKRPIIPGMEFSRSKSDNSSHPQKDDG 366
Query: 726 DNPETIM 746
DNPETIM
Sbjct: 367 DNPETIM 373
>ref|NP_034231.1| sphingosine 1-phosphate receptor 3 [Mus musculus].
Length = 378
Score = 240 bits (612), Expect = 3e-63
Identities = 121/243 (49%), Positives = 162/243 (66%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL AS SLLAIAIER++TM+KM+ ++ + + R FLLI CW+I+ LG LPI+GWNC+
Sbjct: 122 ALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFSLGALPILGWNCLE 181
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
P CST+LPLY K YI IVILY RIY LV++ SRR+ A+
Sbjct: 182 NFPDCSTILPLYSKKYIAFLISIFTAILVTIVILYARIYCLVKSSSRRV--------ANH 233
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+SE+S+ALL+TV+IV+ VFIACW+PLFIL L+DV C+ K C ILF++++F++LAVLNS
Sbjct: 234 NSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRAKECSILFKSQWFIMLAVLNSAM 293
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NP+IYTL++KEMRRAF R++ C + +P + S S+NSSH K
Sbjct: 294 NPVIYTLASKEMRRAFFRLVCGCLVKGKGTQASPMQPALDPSRSKSSSSNNSSHSPKVKE 353
Query: 726 DNP 734
D P
Sbjct: 354 DLP 356
>ref|NP_034463.2| sphingosine 1-phosphate receptor 2 [Mus musculus].
Length = 352
Score = 198 bits (504), Expect = 1e-50
Identities = 103/207 (49%), Positives = 132/207 (63%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER + + K+KL+ R +LI A W+ISLILGGLPI+GWNC++
Sbjct: 116 LSASVFSLLAIAIERQVALAKVKLYGSDKSCRMLMLIGASWLISLILGGLPILGWNCLNQ 175
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY KHY+ AIV LY RIY +VR+ S A +
Sbjct: 176 LEACSTVLPLYAKHYVLCVVTIFSVILLAIVALYVRIYFVVRS-----------SHADVA 224
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
++LALLKTV IVLGVFI CW P F +LLLD C V+ C +L++ YF A LNS N
Sbjct: 225 GPQTLALLKTVTIVLGVFIICWLPAFSILLLDSTCPVRACPVLYKAHYFFAFATLNSLLN 284
Query: 549 PIIYTLSNKEMRRAFVRIMSCCKCPSG 629
P+IYT ++++RR +R + C + G
Sbjct: 285 PVIYTWRSRDLRREVLRPLQCWRRGKG 311
>ref|NP_444420.1| sphingosine 1-phosphate receptor 5 [Mus musculus].
Length = 400
Score = 190 bits (483), Expect = 3e-48
Identities = 110/261 (42%), Positives = 153/261 (58%), Gaps = 20/261 (7%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+ASV SLLAIA+ER++TM + ++R R+ + A W SL+LG LP +GWNC+
Sbjct: 118 ALAASVLSLLAIALERHLTMARRGPAPAASRARTLAMAVAAWGASLLLGLLPALGWNCLG 177
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRL-----TFRKNI 350
L +CSTVLPLY K Y+ AI LY RIY VR +RRL + R
Sbjct: 178 RLETCSTVLPLYAKAYVLFCVLAFLGILAAICALYARIYCQVRANARRLRAGPGSRRATS 237
Query: 351 SKASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAV 530
S SR + +SLALL+T+ +VL F+ACW PLF+LLLLDV C + C +L + + FL LA+
Sbjct: 238 SSRSRHTPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPARACPVLLQADPFLGLAM 297
Query: 531 LNSGTNPIIYTLSNKEMRRAFVRIMSCCKCP---------------SGDSAGKFTRPIIA 665
NS NPIIYT +N+++R A +R++ C + P +G S G R +
Sbjct: 298 ANSLLNPIIYTFTNRDLRHALLRLLCCGRGPCNQDSSNSLQRSPSAAGPSGGGLRRCLPP 357
Query: 666 GMEFSRSKSDNSSHPQKDDGD 728
++ S S S++ S PQ+D D
Sbjct: 358 TLDRSSSPSEHLS-PQQDGVD 377
>ref|NP_766577.1| lysophosphatidic acid receptor 1 [Mus musculus].
Length = 364
Score = 167 bits (423), Expect = 3e-41
Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 131 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 191 DIDHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 248
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 249 NRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCK--CPSGD------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + P+G SA I+AG+
Sbjct: 307 NPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNHTILAGV 356
>ref|NP_034466.2| lysophosphatidic acid receptor 1 [Mus musculus].
Length = 364
Score = 167 bits (423), Expect = 3e-41
Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 131 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 191 DIDHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 248
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 249 NRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCK--CPSGD------SAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + P+G SA I+AG+
Sbjct: 307 NPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNHTILAGV 356
>ref|NP_064412.2| lysophosphatidic acid receptor 2 [Mus musculus].
Length = 348
Score = 148 bits (374), Expect = 1e-35
Identities = 81/205 (39%), Positives = 126/205 (61%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R R LI W +L LG LP W+C+
Sbjct: 111 SLTASVATLLAIAVERHRSVMAVQLHSRLPRGRVVTLIVGVWAAALGLGLLPAHFWHCLC 170
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L SCS ++PL+ + Y+ +V +Y RI+ VR R R+ +++S R
Sbjct: 171 DLDSCSRMVPLFSRSYLAAWALSSLLVFLLMVAVYTRIFFYVRRRVERMA--EHVSCHPR 228
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
E +L+L+KTV+I+LG F+ CW P ++LLLD G K+C++L +YFL+LA NS
Sbjct: 229 YRETTLSLVKTVVIILGAFVVCWTPGQVVLLLD-GLDCKSCNVLAVEKYFLLLAEANSLV 287
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKC 620
N ++Y+ + EMRR F R++ CC C
Sbjct: 288 NAVVYSCRDAEMRRTFRRLL-CCMC 311
>ref|NP_034232.1| sphingosine 1-phosphate receptor 4 [Mus musculus].
Length = 386
Score = 144 bits (364), Expect = 2e-34
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 1/206 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+AS FSLL A ER+ TM+++ + R + I CW+++ ILG LP++GWNC+
Sbjct: 131 ALAASTFSLLFTAGERFATMVRVAESGATKTSRVYGCIGLCWLLAAILGLLPLLGWNCVC 190
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
P CS++LPLY K Y+ AI+ LY I+ +VR ++ S
Sbjct: 191 AFPRCSSLLPLYSKGYVLFCVVVFALILVAILSLYGAIFRVVRANGQK-------SPRPP 243
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDV-GCKVKTCDILFRTEYFLVLAVLNSG 542
+ KS LL TV+++L F+ CW PLF LLL D+ G V + L ++ L LAV NS
Sbjct: 244 ARRKSRRLLNTVLMILVAFVVCWGPLFGLLLADIFGSNVWAQEYLRGMDWILALAVFNSA 303
Query: 543 TNPIIYTLSNKEMRRAFVRIMSCCKC 620
NP+IY+ ++E++RA + + CC C
Sbjct: 304 INPLIYSFRSREVQRAVLAFL-CCGC 328
>ref|NP_075359.1| lysophosphatidic acid receptor 3 [Mus musculus].
Length = 354
Score = 143 bits (360), Expect = 5e-34
Identities = 72/203 (35%), Positives = 125/203 (61%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++++M++H+ + R LLI W I++ +G +P +GWNC+
Sbjct: 112 SLTASLANLLVIAVERHMSIMRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLC 171
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ +CS++ P+Y + Y+ +V +Y RIY V+ ++ L+ + S + R
Sbjct: 172 NISACSSLAPIYSRSYLIFWTVSNLLAFFIMVAVYVRIYMYVKRKTNVLSPHTSGSISRR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + L+KTV+ VLG F+ CW P ++LLLD G K C++ +FL+LA+LNS
Sbjct: 232 RA--PMKLMKTVMTVLGAFVVCWTPGLVVLLLD-GLNCKQCNVQHVKRWFLLLALLNSVM 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSCC 614
NPIIY+ +++M +R M CC
Sbjct: 289 NPIIYSYKDEDMYNT-MRKMICC 310
>ref|NP_032180.1| G-protein coupled receptor 3 [Mus musculus].
Length = 330
Score = 95.5 bits (236), Expect = 1e-19
Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 3/206 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLK-MKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCI 182
A +AS+ SLLAI ++RY+++ + ++ + R++++++ WV +L LG +P++ WNC
Sbjct: 119 AFTASIGSLLAITVDRYLSLYNALTYYSETTVTRTYVMLALVWVGALGLGLVPVLAWNCR 178
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
L +C V PL K+++ ++ LY +I +V ++++ ++++ AS
Sbjct: 179 DGLTTCGVVYPL-SKNHLVVLAIAFFMVFGIMLQLYAQICRIVCRHAQQIALQRHLLPAS 237
Query: 363 R--SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLN 536
++ K +A T+ +VLG F ACW P + LL + T L+ A N
Sbjct: 238 HYVATRKGIA---TLAVVLGAFAACWLPFTVYCLLGDADSPR-----LYTYLTLLPATYN 289
Query: 537 SGTNPIIYTLSNKEMRRAFVRIMSCC 614
S NP+IY N+++++ I CC
Sbjct: 290 SMINPVIYAFRNQDVQKVLWAICCCC 315
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 60,470,573
Number of extensions: 1576534
Number of successful extensions: 7211
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 75
Length of query: 627
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 520
Effective length of database: 12,403,707
Effective search space: 6449927640
Effective search space used: 6449927640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360987.1| PREDICTED: sphingosine 1-phosphate receptor ... 464 e-131
Alignment gi|XP_001925305.1| PREDICTED: sphingosine 1-phosphate receptor ... 240 2e-63
Alignment gi|NP_001230783.1| sphingosine-1-phosphate receptor 2 [Sus scro... 198 8e-51
Alignment gi|NP_001230784.1| sphingosine-1-phosphate receptor 2 [Sus scro... 198 1e-50
Alignment gi|NP_001116581.1| sphingosine 1-phosphate receptor 5 [Sus scro... 192 5e-49
Alignment gi|XP_003353654.1| PREDICTED: lysophosphatidic acid receptor 1-... 167 2e-41
Alignment gi|NP_001155873.1| lysophosphatidic acid receptor 2 [Sus scrofa]. 149 5e-36
Alignment gi|XP_003354047.1| PREDICTED: sphingosine 1-phosphate receptor ... 145 8e-35
Alignment gi|XP_003123083.1| PREDICTED: sphingosine 1-phosphate receptor ... 145 8e-35
Alignment gi|NP_001155874.1| lysophosphatidic acid receptor 3 [Sus scrofa]. 143 3e-34
>ref|XP_003360987.1| PREDICTED: sphingosine 1-phosphate receptor 1-like [Sus scrofa].
Length = 382
Score = 464 bits (1195), Expect = e-131
Identities = 235/247 (95%), Positives = 235/247 (95%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS
Sbjct: 127 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 186
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
TLPSCSTVLPLYHKHYI AIVILYCRIYSLVRTRSRRLTFRKNISKASR
Sbjct: 187 TLPSCSTVLPLYHKHYILFCTTVFTLLLLAIVILYCRIYSLVRTRSRRLTFRKNISKASR 246
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT
Sbjct: 247 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 306
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 725
NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG
Sbjct: 307 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKDDG 366
Query: 726 DNPETIM 746
DNPETIM
Sbjct: 367 DNPETIM 373
>ref|XP_001925305.1| PREDICTED: sphingosine 1-phosphate receptor 3-like [Sus scrofa].
Length = 377
Score = 240 bits (612), Expect = 2e-63
Identities = 128/246 (52%), Positives = 168/246 (68%), Gaps = 2/246 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL AS SLLAIAIER++TM+KM+ ++ + + R FLLI CW+I+ LG LPI+GWNC+
Sbjct: 121 ALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFSLGALPILGWNCLH 180
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
LP CST+LPLY K YI AIVILY RIY LV++ SRR+ N
Sbjct: 181 NLPDCSTILPLYSKRYIAFCVSIFTAILVAIVILYARIYFLVKSSSRRVASPHN------ 234
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
SE+S+ALL+TV+IV+ VFIACW+PLFIL L+DV CKVK C ILF+ ++F+VLAVLNS
Sbjct: 235 -SERSMALLRTVVIVVSVFIACWSPLFILFLVDVACKVKECAILFKAQWFIVLAVLNSAM 293
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCPSGDSAGKFTRPIIAGMEFSRSKS--DNSSHPQKD 719
NP+IYTL++KEMRRAF R++ C C A + + P ++ SRSKS N+S P
Sbjct: 294 NPVIYTLASKEMRRAFFRLV--CTCLVRGRAAR-SLPSQPALDPSRSKSSGSNNSSPSPK 350
Query: 720 DGDNPE 737
++P+
Sbjct: 351 SKEDPQ 356
>ref|NP_001230783.1| sphingosine-1-phosphate receptor 2 [Sus scrofa].
Length = 351
Score = 198 bits (504), Expect = 8e-51
Identities = 102/207 (49%), Positives = 134/207 (64%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER + + K+KL+ R LLI+A W+IS++LGGLPI+GWNC+
Sbjct: 115 LSASVFSLLAIAIERQVAIAKVKLYGSDKSCRMLLLIAASWLISMVLGGLPILGWNCLGH 174
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY K Y+ AIV LY RIY +VR+ S+A +
Sbjct: 175 LEACSTVLPLYAKPYVLCVVTIFSVILSAIVALYIRIYCVVRS-----------SQADVA 223
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
+++LALLKTV IVLGVFI CW P F +LLLD C V+ C IL++ YF A LNS N
Sbjct: 224 GQQTLALLKTVTIVLGVFIVCWLPAFSILLLDYACPVRACPILYKAHYFFAFATLNSLLN 283
Query: 549 PIIYTLSNKEMRRAFVRIMSCCKCPSG 629
P+IYT ++++RR +R + C + +G
Sbjct: 284 PVIYTWRSRDLRREVLRPLQCWRRAAG 310
>ref|NP_001230784.1| sphingosine-1-phosphate receptor 2 [Sus scrofa].
Length = 351
Score = 198 bits (503), Expect = 1e-50
Identities = 102/207 (49%), Positives = 134/207 (64%)
Frame = +3
Query: 9 LSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIST 188
LSASVFSLLAIAIER + + K+KL+ R LLI+A W+IS++LGGLPI+GWNC+
Sbjct: 115 LSASVFSLLAIAIERQVAIAKVKLYGSDKSCRMLLLIAASWLISVVLGGLPILGWNCLGH 174
Query: 189 LPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASRS 368
L +CSTVLPLY K Y+ AIV LY RIY +VR+ S+A +
Sbjct: 175 LEACSTVLPLYAKPYVLCVVTIFSVILSAIVALYIRIYCVVRS-----------SQADVA 223
Query: 369 SEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGTN 548
+++LALLKTV IVLGVFI CW P F +LLLD C V+ C IL++ YF A LNS N
Sbjct: 224 GQQTLALLKTVTIVLGVFIVCWLPAFSILLLDYACPVRACPILYKAHYFFAFATLNSLLN 283
Query: 549 PIIYTLSNKEMRRAFVRIMSCCKCPSG 629
P+IYT ++++RR +R + C + +G
Sbjct: 284 PVIYTWRSRDLRREVLRPLQCWRRAAG 310
>ref|NP_001116581.1| sphingosine 1-phosphate receptor 5 [Sus scrofa].
Length = 398
Score = 192 bits (488), Expect = 5e-49
Identities = 112/258 (43%), Positives = 156/258 (60%), Gaps = 17/258 (6%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
AL+ASV SLLAIA+ER +TM + + R R+ L + W +SL+LG LP +GWNC+
Sbjct: 118 ALAASVLSLLAIALERLLTMERRGPAPAARRGRTLALAAGAWGVSLLLGLLPALGWNCLG 177
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFR----KNIS 353
L +CSTVLPLY K Y+ AI LY RIY VR +++RL R + S
Sbjct: 178 RLEACSTVLPLYAKAYVLFCVLAFVGILAAICGLYARIYCQVRAKAQRLRARPGAGEGTS 237
Query: 354 KASRSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVL 533
+R + +SLALL+T+ +VL F+ACW PLF+LLLLDV C + C +L + + FL LA+
Sbjct: 238 ARARGTPRSLALLRTLSVVLVAFVACWGPLFLLLLLDVACPARACPVLLQADPFLGLAMA 297
Query: 534 NSGTNPIIYTLSNKEMRRAFVRIMSCCKCP----SGDS---------AGKFTRPIIAGME 674
NS NPIIYT +N+++R A +R++ C + P SG S +G R + GM+
Sbjct: 298 NSLLNPIIYTFTNRDLRHALLRLICCGRRPCWGGSGTSRSPGSTLGASGGLHRWLPPGMD 357
Query: 675 FSRSKSDNSSHPQKDDGD 728
S S+S+ SS PQ+D D
Sbjct: 358 RSSSRSERSS-PQRDGLD 374
>ref|XP_003353654.1| PREDICTED: lysophosphatidic acid receptor 1-like [Sus scrofa].
Length = 410
Score = 167 bits (422), Expect = 2e-41
Identities = 90/230 (39%), Positives = 135/230 (58%), Gaps = 8/230 (3%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIAIER+IT+ +M+LH + R ++I W +++++G +P +GWNCI
Sbjct: 177 SLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCIC 236
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ CS + PLY Y+ +V+LY I+ VR R+ R++ ++ S R
Sbjct: 237 DIEHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMS--RHSSGPRR 294
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ + ++LLKTV+IVLG FI CW P +LLLLDV C CD+L ++FL+LA NS
Sbjct: 295 NRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCC--PQCDVLAYEKFFLLLAEFNSAM 352
Query: 546 NPIIYTLSNKEMRRAFVRIMSCCKCP--------SGDSAGKFTRPIIAGM 671
NPIIY+ +KEM F +I+ C + S SA I+AG+
Sbjct: 353 NPIIYSYRDKEMSATFRQILCCQRSENTSGPTEGSDRSASSLNHTILAGV 402
>ref|NP_001155873.1| lysophosphatidic acid receptor 2 [Sus scrofa].
Length = 351
Score = 149 bits (376), Expect = 5e-36
Identities = 88/240 (36%), Positives = 139/240 (57%), Gaps = 2/240 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+ASV +LLAIA+ER+ +++ ++LH+ R R +LI WV +L LG LP W+C+
Sbjct: 114 SLTASVATLLAIAVERHRSVMAVQLHSRLPRGRVIMLIVGVWVAALGLGLLPARSWHCLC 173
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
L CS + PL + Y+ +V +Y RI+ VR R +R+ +++S R
Sbjct: 174 ALDRCSRMAPLLSRSYLAVWALSSLLVFLLMVAVYTRIFFYVRRRVQRMA--EHVSCHPR 231
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLD-VGCKVKTCDILFRTEYFLVLAVLNSG 542
E +L+L+KTV+I+LG F+ CW P ++LLLD +GC K+C++L +YFL+LA NS
Sbjct: 232 YRETTLSLVKTVVIILGAFVICWTPGQVVLLLDGLGC--KSCNVLAVEKYFLLLAEANSL 289
Query: 543 TNPIIYTLSNKEMRRAFVRIMSC-CKCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQKD 719
N ++Y+ + EMRR F R++ C C S + ++T G +R + HP D
Sbjct: 290 VNAVVYSCRDAEMRRTFRRLLCCLCLRQSDHKSVRYTPSTQTGTS-TRIMLPENGHPLMD 348
>ref|XP_003354047.1| PREDICTED: sphingosine 1-phosphate receptor 4-like [Sus scrofa].
Length = 354
Score = 145 bits (366), Expect = 8e-35
Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 2/207 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSN-RFRSFLLISACWVISLILGGLPIMGWNCI 182
AL+AS FSLL A ER+ TM++ +G+ R R I CW+++ +LG LP++GWNC+
Sbjct: 129 ALAASTFSLLFTAGERFATMVRPVAESGATKRGRVCSFIGLCWLLATLLGLLPLLGWNCV 188
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
CS++LPLY K YI I +LY I+ +VR ++ + +
Sbjct: 189 CAFQRCSSLLPLYSKDYILFCVVVFACILATITVLYGAIFRVVRANGQK-------AMRA 241
Query: 363 RSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDV-GCKVKTCDILFRTEYFLVLAVLNS 539
+ K+ +LL TV+++L F+ CW PLF LLL D+ G V + L E+ L LAVLNS
Sbjct: 242 PARRKARSLLNTVLMILVAFVVCWGPLFGLLLADIFGSNVWAQEYLRGMEWILTLAVLNS 301
Query: 540 GTNPIIYTLSNKEMRRAFVRIMSCCKC 620
G NP+IY+ ++++RRA + + CC C
Sbjct: 302 GINPLIYSFRSRDVRRAVLSFL-CCPC 327
>ref|XP_003123083.1| PREDICTED: sphingosine 1-phosphate receptor 4-like [Sus scrofa].
Length = 385
Score = 145 bits (366), Expect = 8e-35
Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 2/207 (0%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSN-RFRSFLLISACWVISLILGGLPIMGWNCI 182
AL+AS FSLL A ER+ TM++ +G+ R R I CW+++ +LG LP++GWNC+
Sbjct: 129 ALAASTFSLLFTAGERFATMVRPVAESGATKRGRVCSFIGLCWLLATLLGLLPLLGWNCV 188
Query: 183 STLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKAS 362
CS++LPLY K YI I +LY I+ +VR ++ + +
Sbjct: 189 CAFQRCSSLLPLYSKDYILFCVVVFACILATITVLYGAIFRVVRANGQK-------AMRA 241
Query: 363 RSSEKSLALLKTVIIVLGVFIACWAPLFILLLLDV-GCKVKTCDILFRTEYFLVLAVLNS 539
+ K+ +LL TV+++L F+ CW PLF LLL D+ G V + L E+ L LAVLNS
Sbjct: 242 PARRKARSLLNTVLMILVAFVVCWGPLFGLLLADIFGSNVWAQEYLRGMEWILTLAVLNS 301
Query: 540 GTNPIIYTLSNKEMRRAFVRIMSCCKC 620
G NP+IY+ ++++RRA + + CC C
Sbjct: 302 GINPLIYSFRSRDVRRAVLSFL-CCPC 327
>ref|NP_001155874.1| lysophosphatidic acid receptor 3 [Sus scrofa].
Length = 354
Score = 143 bits (361), Expect = 3e-34
Identities = 81/244 (33%), Positives = 138/244 (56%), Gaps = 3/244 (1%)
Frame = +3
Query: 6 ALSASVFSLLAIAIERYITMLKMKLHNGSNRFRSFLLISACWVISLILGGLPIMGWNCIS 185
+L+AS+ +LL IA+ER++++ M++H+ + R LLI WVI++ +G +P +GWNC+
Sbjct: 112 SLTASLTNLLVIAVERHMSVTSMRIHSNLTKKRVTLLILFVWVIAIFMGAVPTLGWNCLC 171
Query: 186 TLPSCSTVLPLYHKHYIXXXXXXXXXXXXAIVILYCRIYSLVRTRSRRLTFRKNISKASR 365
+ SCS++ P+Y + Y+ +V++Y RIY V+ ++ L+ ++S +
Sbjct: 172 DISSCSSLAPVYSRSYLIFWTVSNLVTFFIMVVVYLRIYMYVKRKTSVLS--PHMSGSIS 229
Query: 366 SSEKSLALLKTVIIVLGVFIACWAPLFILLLLDVGCKVKTCDILFRTEYFLVLAVLNSGT 545
+ L+KTV+ VLG FI CW P ++LLLD G C++ +FL+LA+LNS
Sbjct: 230 RRRTPMKLMKTVMAVLGAFIVCWTPGLVVLLLD-GLNCTQCNVQHVKRWFLLLALLNSAM 288
Query: 546 NPIIYTLSNKEMRRAFVRIMSCC---KCPSGDSAGKFTRPIIAGMEFSRSKSDNSSHPQK 716
NPIIY+ +++M R++ C + P G + I M S+SD S +
Sbjct: 289 NPIIYSYKDEDMYSTMKRMIFCFLQERNPEGQPSR------IPSMVL--SQSDTGSRYME 340
Query: 717 DDGD 728
D+G+
Sbjct: 341 DNGN 344
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,162,668
Number of extensions: 1237864
Number of successful extensions: 5787
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 5633
Number of HSP's successfully gapped: 67
Length of query: 627
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 522
Effective length of database: 8,729,747
Effective search space: 4556927934
Effective search space used: 4556927934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002053
(1883 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893226.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 2829 0.0
Sscrofa_Chr14 84 3e-13
>gb|GL893226.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2011
Length = 128915
Score = 2829 bits (1427), Expect = 0.0
Identities = 1469/1487 (98%), Gaps = 1/1487 (0%)
Strand = Plus / Plus
Query: 9 ctgtcggcctcggtgttcagcctcctcgccatcgccatcgagcgctacatcaccatgctg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114223 ctgtcggcctcggtgttcagcctcctcgccatcgccatcgagcgctacatcaccatgctg 114282
Query: 69 aagatgaaactccacaacgggagcaaccggttccgctcctttctgctcatcagcgcctgt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114283 aagatgaaactccacaacgggagcaaccggttccgctcctttctgctcatcagcgcctgt 114342
Query: 129 tgggtcatctctctcatcctggggggcttgcccatcatgggctggaactgcatcagcacg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114343 tgggtcatctctctcatcctggggggcttgcccatcatgggctggaactgcatcagcacg 114402
Query: 189 ctgcccagctgctccaccgtgctaccgctctaccacaagcactatatcctcttctgcacc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114403 ctgcccagctgctccaccgtgctaccgctctaccacaagcactatatcctcttctgcacc 114462
Query: 249 acggtctttactctgctcctgctcgccatcgtcatcctgtattgcaggatctactccttg 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114463 acggtctttactctgctcctgctcgccatcgtcatcctgtattgcaggatctactccttg 114522
Query: 309 gtcaggactcggagccgccgtctgaccttccgcaagaacatttccaaggccagccgcagc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114523 gtcaggactcggagccgccgtctgaccttccgcaagaacatttccaaggccagccgcagc 114582
Query: 369 tccgagaagtccctggcgctgctcaagacggtgattatcgtgctgggcgtcttcatcgcc 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114583 tccgagaagtccctggcgctgctcaagacggtgattatcgtgctgggcgtcttcatcgcc 114642
Query: 429 tgctgggcgccgctcttcatcctgctcctgctggacgtgggctgcaaggtgaagacctgt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114643 tgctgggcgccgctcttcatcctgctcctgctggacgtgggctgcaaggtgaagacctgt 114702
Query: 489 gacatcctcttccgaacggagtacttcctggtgttggctgtgctcaactcgggcaccaac 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114703 gacatcctcttccgaacggagtacttcctggtgttggctgtgctcaactcgggcaccaac 114762
Query: 549 cccatcatttacactttgtccaacaaggagatgcgccgggccttcgtcaggatcatgtcc 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114763 cccatcatttacactttgtccaacaaggagatgcgccgggccttcgtcaggatcatgtcc 114822
Query: 609 tgctgcaagtgtcccagtggagactccgccggcaaattcacgcgacccatcatcgctggc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114823 tgctgcaagtgtcccagtggagactccgccggcaaattcacgcgacccatcatcgctggc 114882
Query: 669 atggagttcagccgcagtaagtcagataactcctcccacccgcagaaggacgatggggac 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114883 atggagttcagccgcagtaagtcagataactcctcccacccgcagaaggacgatggggac 114942
Query: 729 aacccagagaccattatgtcttctggaaacgtcaactcttcttcctaaaagtgaaacctg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114943 aacccagagaccattatgtcttctggaaacgtcaactcttcttcctaaaagtgaaacctg 115002
Query: 789 ccaacccgtgtggagtgttcttgcgttggtcgccaaccacccaagtgtttggaaaag-nn 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115003 ccaacccgtgtggagtgttcttgcgttggtcgccaaccacccaagtgtttggaaaagaaa 115062
Query: 848 nnnnnnnnnnnnnntctctgtgcctcctgtggctgccaggaaggagctgccaggagccag 907
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115063 aaaaaaaaaaaaaatctctgtgcctcctgtggctgccaggaaggagctgccaggagccag 115122
Query: 908 agggagggaggcaggggggcaagaacagcctggtggtgcctgacgttggtgggtagactt 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115123 agggagggaggcaggggggcaagaacagcctggtggtgcctgacgttggtgggtagactt 115182
Query: 968 ggttcctgtgaacaatgcactgggaagggtggagatcaggtcctcgcctggagtctattt 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115183 ggttcctgtgaacaatgcactgggaagggtggagatcaggtcctcgcctggagtctattt 115242
Query: 1028 ccgcccccaccccctctcctggggctttgattttgcactgagccaaaggtctagcattat 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115243 ccgcccccaccccctctcctggggctttgattttgcactgagccaaaggtctagcattat 115302
Query: 1088 caagctccggaggagttcatctggcccctcctcaaagactgaggaccctgtgtgaaagcg 1147
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 115303 caagctccggaggagttcatctggcccctcctcaaagacagaggaccctgtgtgaaagcg 115362
Query: 1148 tctctgtctggagctttgaggagttgttttctctcagtttagttgccaacccaggtgagc 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115363 tctctgtctggagctttgaggagttgttttctctcagtttagttgccaacccaggtgagc 115422
Query: 1208 gtgtgcacttctgctttgctaggttgctctacagatccaaccctccttcccccttcacac 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115423 gtgtgcacttctgctttgctaggttgctctacagatccaaccctccttcccccttcacac 115482
Query: 1268 ccatcctcagcatctctttactttatatgttaactacctgggattccgagctgggggcgt 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115483 ccatcctcagcatctctttactttatatgttaactacctgggattccgagctgggggcgt 115542
Query: 1328 ggcatggtccattcttgatcttgtgtagcaggtgggctgtgcccagcaaggagacgctgg 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115543 ggcatggtccattcttgatcttgtgtagcaggtgggctgtgcccagcaaggagacgctgg 115602
Query: 1388 tggcgatggtttggagaggtgaaacgatgtcacctgccggggccaaagcgtccacgtaag 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115603 tggcgatggtttggagaggtgaaacgatgtcacctgccggggccaaagcgtccacgtaag 115662
Query: 1448 ctggatgcattctttttttcttgaatctggttgttgtcactttctta 1494
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115663 ctggatgcattctttttttcttgaatctggttgttgtcactttctta 115709
Score = 410 bits (207), Expect = e-111
Identities = 230/240 (95%)
Strand = Plus / Plus
Query: 1548 tatcacatccgccaggctgaaatctgcataaagaagttcagtttgtttaaatgacatcag 1607
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 115824 tatcatatccgccaggctgaaatgtgcataaagaagttcagtttgtttaaatgacatcag 115883
Query: 1608 ccaggatccttagtgtcatagcagaaacnnnnnnngcaaaatagggggtaaatggactga 1667
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 115884 ccaggatccttagtgtcatagcagaaacaaaaaaagcaaaatagggggtaaatggactga 115943
Query: 1668 agggtgactgtaaaccaagagagatttcttaaggaatttgtgtaacaaatacaacatgtc 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115944 agggtgactgtaaaccaagagagatttcttaaggaatttgtgtaacaaatacaacatgtc 116003
Query: 1728 tttggtacttttgttgatgtttctttcagagtgttgtgtgaatcatttcaaccaacagga 1787
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116004 tttggcacttttgttgatgtttctttcagagtgttgtgtgaatcatttcaaccaacagga 116063
>Sscrofa_Chr14
|| Length = 153851969
Score = 83.8 bits (42), Expect = 3e-13
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 405 atcgtgctgggcgtcttcatcgcctgctgggcgccgctcttcatcctgctcctgctggac 464
|||||| || |||||||||||||||||||| | |||||||||||||| |||| |||||
Sbjct: 892850 atcgtggtgagcgtcttcatcgcctgctggtccccgctcttcatcctcttcctcgtggac 892909
Query: 465 gtgggctgcaaggtgaag 482
|||| |||||||||||||
Sbjct: 892910 gtggcctgcaaggtgaag 892927
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,607,281
Number of extensions: 381
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 4
Length of query: 1883
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1861
Effective length of database: 2,808,408,574
Effective search space: 5226448356214
Effective search space used: 5226448356214
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)