Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039620.1| F-box only protein 32 [Bos taurus]. 630 0.0
Alignment gi|NP_001069679.1| F-box only protein 25 [Bos taurus]. 388 e-108
>ref|NP_001039620.1| F-box only protein 32 [Bos taurus].
Length = 355
Score = 630 bits (1624), Expect = 0.0
Identities = 310/327 (94%), Positives = 317/327 (96%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDL SYC+KEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLGSYCSKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
RCYPRK+QYG+T L ++ I +G
Sbjct: 301 ARCYPRKEQYGDTLQLCRHCHILSWKG 327
>ref|NP_001069679.1| F-box only protein 25 [Bos taurus].
Length = 357
Score = 388 bits (997), Expect = e-108
Identities = 198/329 (60%), Positives = 248/329 (75%), Gaps = 5/329 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 434
MPFLGQDWRSPG SW+KT DGWKR D S + +S C+ + N E+ +F++
Sbjct: 1 MPFLGQDWRSPGWSWMKTEDGWKR-CDAWSQELEGE-NSQCDIGHGIILNSEDEEIFSNE 58
Query: 435 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 614
++ A+KKRKKD + T TQ F++E WIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEFASKKRKKDHFRNDTNTQCFYRENWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQD 118
Query: 615 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 794
RRFNYVVRLL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL D QN RLI++LLQ L +
Sbjct: 119 IRRFNYVVRLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLGDHQNPRLIKDLLQDLSS 178
Query: 795 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 974
+LC L++ VGKSVLVGNIN+W+ R+ET+L WQQQL N+Q+T GLT +DLP+ + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETVLRWQQQLQNLQMTE-VDSGLTLSDLPVHMLSN 237
Query: 975 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKK 1154
I+ R SDG D+V+LGQV P L LSEDR LWKKLCQYHF E+Q + LILS KG ++WK
Sbjct: 238 ILYRFSDGWDIVTLGQVTPTLSALSEDRQLWKKLCQYHFGEKQFCRHLILSEKGHVEWKL 297
Query: 1155 MYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP K+QYG+T ++ +I F
Sbjct: 298 MYFALQKHYPTKEQYGDTLHFCRHCSILF 326
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,700,213
Number of extensions: 1374315
Number of successful extensions: 9026
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8664
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,207,134
Effective search space: 4517868612
Effective search space used: 4517868612
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861725.1| PREDICTED: similar to F-box only protein 32 iso... 630 0.0
Alignment gi|XP_532324.2| PREDICTED: similar to F-box only protein 32 iso... 630 0.0
Alignment gi|XP_861780.1| PREDICTED: similar to F-box only protein 32 iso... 614 e-176
Alignment gi|XP_861693.1| PREDICTED: similar to F-box only protein 32 iso... 584 e-167
Alignment gi|XP_861752.1| PREDICTED: similar to F-box only protein 32 iso... 585 e-167
Alignment gi|XP_859852.1| PREDICTED: similar to F-box only protein 25 iso... 408 e-114
Alignment gi|XP_859924.1| PREDICTED: similar to F-box only protein 25 iso... 395 e-110
Alignment gi|XP_859890.1| PREDICTED: similar to F-box only protein 25 iso... 394 e-110
Alignment gi|XP_859821.1| PREDICTED: similar to F-box only protein 25 iso... 393 e-109
Alignment gi|XP_859958.1| PREDICTED: similar to F-box only protein 25 iso... 392 e-109
>ref|XP_861725.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 3
[Canis familiaris].
Length = 366
Score = 630 bits (1624), Expect(2) = 0.0
Identities = 309/322 (95%), Positives = 315/322 (97%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG FVSDL SYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGGFVSDLGSYCNKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAI 1235
VRCYPRK+QYG+T L ++ I
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHI 322
Score = 24.6 bits (52), Expect(2) = 0.0
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Frame = +1
Query: 1210 LHFCKTWQFLSWK-----------GTDNPCT 1269
L C+ LSWK GTD+PCT
Sbjct: 314 LQLCRHCHILSWKVFRPNHDVPFQGTDHPCT 344
>ref|XP_532324.2| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 1
[Canis familiaris].
Length = 355
Score = 630 bits (1625), Expect = 0.0
Identities = 310/327 (94%), Positives = 317/327 (96%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG FVSDL SYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGGFVSDLGSYCNKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
VRCYPRK+QYG+T L ++ I +G
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHILSWKG 327
>ref|XP_861780.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 5
[Canis familiaris].
Length = 353
Score = 614 bits (1583), Expect = e-176
Identities = 304/327 (92%), Positives = 313/327 (95%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG + + YCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGEISA--AHYCNKEVYNKENLFNSLNYDVA 58
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 59 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 118
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 119 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 178
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 179 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 238
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 239 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 298
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
VRCYPRK+QYG+T L ++ I +G
Sbjct: 299 VRCYPRKEQYGDTLQLCRHCHILSWKG 325
>ref|XP_861693.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 2
[Canis familiaris].
Length = 367
Score = 584 bits (1506), Expect(2) = e-167
Identities = 292/323 (90%), Positives = 300/323 (92%), Gaps = 1/323 (0%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLD-EKSGSFVSDLSSYCNKEVYNKENLFNSLNYDV 446
MPFLGQDWRSPGQSWVKTADGW K + S +EVYNKENLFNSLNYDV
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWNSLFGCSKCTNCESSQCHLGRREVYNKENLFNSLNYDV 60
Query: 447 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 626
AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF
Sbjct: 61 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 120
Query: 627 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 806
NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT
Sbjct: 121 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 180
Query: 807 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQR 986
LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQR
Sbjct: 181 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQR 240
Query: 987 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFK 1166
LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFK
Sbjct: 241 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 300
Query: 1167 LVRCYPRKKQYGNTPSLLQNMAI 1235
LVRCYPRK+QYG+T L ++ I
Sbjct: 301 LVRCYPRKEQYGDTLQLCRHCHI 323
Score = 24.6 bits (52), Expect(2) = e-167
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Frame = +1
Query: 1210 LHFCKTWQFLSWK-----------GTDNPCT 1269
L C+ LSWK GTD+PCT
Sbjct: 315 LQLCRHCHILSWKVFRPNHDVPFQGTDHPCT 345
>ref|XP_861752.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 4
[Canis familiaris].
Length = 356
Score = 585 bits (1507), Expect = e-167
Identities = 293/328 (89%), Positives = 302/328 (92%), Gaps = 1/328 (0%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLD-EKSGSFVSDLSSYCNKEVYNKENLFNSLNYDV 446
MPFLGQDWRSPGQSWVKTADGW K + S +EVYNKENLFNSLNYDV
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWNSLFGCSKCTNCESSQCHLGRREVYNKENLFNSLNYDV 60
Query: 447 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 626
AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF
Sbjct: 61 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 120
Query: 627 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 806
NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT
Sbjct: 121 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 180
Query: 807 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQR 986
LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQR
Sbjct: 181 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQR 240
Query: 987 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFK 1166
LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFK
Sbjct: 241 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 300
Query: 1167 LVRCYPRKKQYGNTPSLLQNMAISFLEG 1250
LVRCYPRK+QYG+T L ++ I +G
Sbjct: 301 LVRCYPRKEQYGDTLQLCRHCHILSWKG 328
>ref|XP_859852.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 4
[Canis familiaris].
Length = 355
Score = 408 bits (1049), Expect = e-114
Identities = 197/324 (60%), Positives = 250/324 (77%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPG SW+KT DGWKRF G++V+ S C + ++ E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRFGRHSRGTWVAQWLSICLQLKFDDEEIFSNEEQKYT 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D RRF
Sbjct: 61 SKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDIRRFT 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++LC L
Sbjct: 121 YVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSSTLCIL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI+ R
Sbjct: 181 IRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNILYRF 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS KG ++WK MYF L
Sbjct: 241 SDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLMYFAL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISF 1241
+ YP ++QYG+T ++ +I F
Sbjct: 301 QKHYPPREQYGDTLHFCRHCSILF 324
>ref|XP_859924.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 6
[Canis familiaris].
Length = 354
Score = 395 bits (1016), Expect = e-110
Identities = 197/330 (59%), Positives = 249/330 (75%), Gaps = 6/330 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRF------LDEKSGSFVSDLSSYCNKEVYNKENLFNS 431
MPFLGQDWRSPG SW+KT DGWKR LD ++ +S L+S + E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPSLSILNS-------DDEEIFSN 53
Query: 432 LNYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAIL 611
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI
Sbjct: 54 EEQKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQ 113
Query: 612 DSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLY 791
D RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L
Sbjct: 114 DIRRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLS 173
Query: 792 TSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQL 971
++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL +
Sbjct: 174 STLCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLN 233
Query: 972 NIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWK 1151
NI+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS KG ++WK
Sbjct: 234 NILYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWK 293
Query: 1152 KMYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP ++QYG+T ++ +I F
Sbjct: 294 LMYFALQKHYPPREQYGDTLHFCRHCSILF 323
>ref|XP_859890.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 5
[Canis familiaris].
Length = 357
Score = 394 bits (1013), Expect = e-110
Identities = 195/326 (59%), Positives = 244/326 (74%), Gaps = 2/326 (0%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNK--ENLFNSLNYD 443
MPFLGQDWRSPG SW+KT DGWKR + S N + N E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPSLLNLHILNSDDEEIFSNEEQK 60
Query: 444 VAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRR 623
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D RR
Sbjct: 61 YTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDIRR 120
Query: 624 FNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLC 803
F YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++LC
Sbjct: 121 FTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSSTLC 180
Query: 804 TLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQ 983
L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI+
Sbjct: 181 ILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNILY 240
Query: 984 RLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYF 1163
R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS KG ++WK MYF
Sbjct: 241 RFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLMYF 300
Query: 1164 KLVRCYPRKKQYGNTPSLLQNMAISF 1241
L + YP ++QYG+T ++ +I F
Sbjct: 301 ALQKHYPPREQYGDTLHFCRHCSILF 326
>ref|XP_859821.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 3
[Canis familiaris].
Length = 357
Score = 393 bits (1010), Expect = e-109
Identities = 197/328 (60%), Positives = 247/328 (75%), Gaps = 4/328 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYD-- 443
MPFLGQDWRSPG SW+KT DGWKR L + ++ S + C E+ N S+ D
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRSLKHRGRTWKSQ--NPCPMELPFWSNRQQSVYLDDR 58
Query: 444 --VAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDS 617
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 CKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDI 118
Query: 618 RRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTS 797
RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++
Sbjct: 119 RRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSST 178
Query: 798 LCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNI 977
LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI
Sbjct: 179 LCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNI 238
Query: 978 MQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKM 1157
+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS KG ++WK M
Sbjct: 239 LYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLM 298
Query: 1158 YFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
YF L + YP ++QYG+T ++ +I F
Sbjct: 299 YFALQKHYPPREQYGDTLHFCRHCSILF 326
>ref|XP_859958.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 7
[Canis familiaris].
Length = 358
Score = 392 bits (1008), Expect = e-109
Identities = 196/330 (59%), Positives = 246/330 (74%), Gaps = 6/330 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRF------LDEKSGSFVSDLSSYCNKEVYNKENLFNS 431
MPFLGQDWRSPG SW+KT DGWKR LD ++ S N + E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPCNVSHSIILNSD---DEEIFSN 57
Query: 432 LNYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAIL 611
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI
Sbjct: 58 EEQKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQ 117
Query: 612 DSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLY 791
D RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L
Sbjct: 118 DIRRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLS 177
Query: 792 TSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQL 971
++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL +
Sbjct: 178 STLCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLN 237
Query: 972 NIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWK 1151
NI+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS KG ++WK
Sbjct: 238 NILYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWK 297
Query: 1152 KMYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP ++QYG+T ++ +I F
Sbjct: 298 LMYFALQKHYPPREQYGDTLHFCRHCSILF 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,659,915
Number of extensions: 1416036
Number of successful extensions: 9445
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 9108
Number of HSP's successfully gapped: 14
Length of query: 423
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 318
Effective length of database: 15,374,224
Effective search space: 4889003232
Effective search space used: 4889003232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_478136.1| F-box only protein 32 isoform 1 [Homo sapiens]. 632 0.0
Alignment gi|NP_904357.1| F-box only protein 25 isoform 1 [Homo sapiens]. 400 e-111
Alignment gi|NP_904356.1| F-box only protein 25 isoform 2 [Homo sapiens]. 400 e-111
Alignment gi|NP_680482.1| F-box only protein 32 isoform 2 [Homo sapiens]. 336 2e-92
Alignment gi|NP_036305.2| F-box only protein 25 isoform 3 [Homo sapiens]. 305 6e-83
Alignment gi|NP_001229392.1| F-box only protein 32 isoform 3 [Homo sapien... 263 3e-70
>ref|NP_478136.1| F-box only protein 32 isoform 1 [Homo sapiens].
Length = 355
Score = 632 bits (1630), Expect = 0.0
Identities = 311/327 (95%), Positives = 318/327 (97%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQ+WVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQ APDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
VRCYPRK+QYG+T L ++ I +G
Sbjct: 301 VRCYPRKEQYGDTLQLCKHCHILSWKG 327
>ref|NP_904357.1| F-box only protein 25 isoform 1 [Homo sapiens].
Length = 367
Score = 400 bits (1028), Expect = e-111
Identities = 198/329 (60%), Positives = 252/329 (76%), Gaps = 5/329 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 434
MPFLGQDWRSPG SW+KT DGWKR E + ++ CN + N E+ +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE 58
Query: 435 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 614
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 615 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 794
RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D N RLI++LLQ L +
Sbjct: 119 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS 178
Query: 795 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 974
+LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL ++Q+T+ GLT +DLPL + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN 238
Query: 975 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKK 1154
I+ R SDG D+++LGQV P L++LSEDR LWKKLCQYHF+E+Q + LILS KG ++WK
Sbjct: 239 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 298
Query: 1155 MYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP K+QYG+T ++ +I F
Sbjct: 299 MYFALQKHYPAKEQYGDTLHFCRHCSILF 327
>ref|NP_904356.1| F-box only protein 25 isoform 2 [Homo sapiens].
Length = 358
Score = 400 bits (1028), Expect = e-111
Identities = 198/329 (60%), Positives = 252/329 (76%), Gaps = 5/329 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 434
MPFLGQDWRSPG SW+KT DGWKR E + ++ CN + N E+ +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE 58
Query: 435 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 614
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 615 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 794
RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D N RLI++LLQ L +
Sbjct: 119 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS 178
Query: 795 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 974
+LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL ++Q+T+ GLT +DLPL + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN 238
Query: 975 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKK 1154
I+ R SDG D+++LGQV P L++LSEDR LWKKLCQYHF+E+Q + LILS KG ++WK
Sbjct: 239 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 298
Query: 1155 MYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP K+QYG+T ++ +I F
Sbjct: 299 MYFALQKHYPAKEQYGDTLHFCRHCSILF 327
>ref|NP_680482.1| F-box only protein 32 isoform 2 [Homo sapiens].
Length = 210
Score = 336 bits (862), Expect = 2e-92
Identities = 167/182 (91%), Positives = 173/182 (95%)
Frame = +3
Query: 705 MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH 884
MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH
Sbjct: 1 MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH 60
Query: 885 WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLL 1064
WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQ APDLHVLSEDRLL
Sbjct: 61 WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLL 120
Query: 1065 WKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKLVRCYPRKKQYGNTPSLLQNMAISFL 1244
WKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKLVRCYPRK+QYG+T L ++ I
Sbjct: 121 WKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSW 180
Query: 1245 EG 1250
+G
Sbjct: 181 KG 182
>ref|NP_036305.2| F-box only protein 25 isoform 3 [Homo sapiens].
Length = 291
Score = 305 bits (781), Expect = 6e-83
Identities = 147/232 (63%), Positives = 188/232 (81%)
Frame = +3
Query: 546 ERHGYCTLGEAFNRLDFSTAILDSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKV 725
+RHGYCTLGEAFNRLDFS+AI D RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+
Sbjct: 29 KRHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKI 88
Query: 726 VLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNN 905
V KVL+D N RLI++LLQ L ++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL +
Sbjct: 89 VQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQD 148
Query: 906 IQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQY 1085
+Q+T+ GLT +DLPL + NI+ R SDG D+++LGQV P L++LSEDR LWKKLCQY
Sbjct: 149 LQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQY 208
Query: 1086 HFSERQIRKRLILSNKGQLDWKKMYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
HF+E+Q + LILS KG ++WK MYF L + YP K+QYG+T ++ +I F
Sbjct: 209 HFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILF 260
>ref|NP_001229392.1| F-box only protein 32 isoform 3 [Homo sapiens].
Length = 262
Score = 263 bits (672), Expect = 3e-70
Identities = 123/124 (99%), Positives = 124/124 (100%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQ+WVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVR 641
YVVR
Sbjct: 121 YVVR 124
Score = 199 bits (507), Expect = 3e-51
Identities = 96/113 (84%), Positives = 103/113 (91%)
Frame = +3
Query: 912 ITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHF 1091
+ RPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQ APDLHVLSEDRLLWKKLCQYHF
Sbjct: 122 VVRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHF 181
Query: 1092 SERQIRKRLILSNKGQLDWKKMYFKLVRCYPRKKQYGNTPSLLQNMAISFLEG 1250
SERQIRKRLILS+KGQLDWKKMYFKLVRCYPRK+QYG+T L ++ I +G
Sbjct: 182 SERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSWKG 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,807,287
Number of extensions: 1387907
Number of successful extensions: 8512
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8192
Number of HSP's successfully gapped: 7
Length of query: 423
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 318
Effective length of database: 14,835,944
Effective search space: 4717830192
Effective search space used: 4717830192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080622.1| F-box only protein 32 [Mus musculus]. 615 e-176
Alignment gi|NP_080061.1| F-box only protein 25 [Mus musculus]. 388 e-108
>ref|NP_080622.1| F-box only protein 32 [Mus musculus].
Length = 355
Score = 615 bits (1585), Expect = e-176
Identities = 302/327 (92%), Positives = 315/327 (96%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVY+KENLF+SLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYSKENLFSSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKD+ NSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDIQNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLN+IQI+RPAFKGLT TDLP+CLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNSIQISRPAFKGLTITDLPVCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQ APDLHVLSEDRLLWK+LCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQAAPDLHVLSEDRLLWKRLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
VRCYPR++QYG T L ++ I +G
Sbjct: 301 VRCYPRREQYGVTLQLCKHCHILSWKG 327
>ref|NP_080061.1| F-box only protein 25 [Mus musculus].
Length = 357
Score = 388 bits (997), Expect = e-108
Identities = 198/328 (60%), Positives = 247/328 (75%), Gaps = 4/328 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYC-NKEVY---NKENLFNSLN 437
MPFLGQDWRSPG SW+KT DGWKR D S S+ S Y N + +E +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKR-CDPCSHELRSEDSQYTINHSIILNSGEEEIFNN-E 58
Query: 438 YDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDS 617
+ AAKKRKK+ + T F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 CEYAAKKRKKEHFGNDTAAHSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDI 118
Query: 618 RRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTS 797
RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI+ LLQ L ++
Sbjct: 119 RRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKGLLQDLSST 178
Query: 798 LCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNI 977
L LV+ VGKSVLVGNIN+W+ R+ET+L WQQQL N+Q+T+ GLT +DLPL + NI
Sbjct: 179 LGILVRGVGKSVLVGNINIWICRLETVLSWQQQLQNLQVTKQVNTGLTLSDLPLHMLNNI 238
Query: 978 MQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKM 1157
+ R SDG D+V+LGQV P L++LSEDR LWK+LCQYHF+E+Q + LILS KG ++WK M
Sbjct: 239 LYRFSDGWDIVTLGQVTPTLYMLSEDRRLWKRLCQYHFAEQQFCRHLILSEKGHIEWKLM 298
Query: 1158 YFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
YF L + YP K+QYG+T ++ +I F
Sbjct: 299 YFTLQKYYPTKEQYGDTLHFCRHCSILF 326
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,441,401
Number of extensions: 1164320
Number of successful extensions: 7076
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6796
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 319
Effective length of database: 12,493,815
Effective search space: 3985526985
Effective search space used: 3985526985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038053.1| F-box only protein 32 [Sus scrofa]. 635 0.0
Alignment gi|XP_003361666.1| PREDICTED: f-box only protein 25-like, parti... 383 e-106
>ref|NP_001038053.1| F-box only protein 32 [Sus scrofa].
Length = 355
Score = 635 bits (1637), Expect = 0.0
Identities = 313/327 (95%), Positives = 319/327 (97%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 449
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 450 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 629
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 630 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 809
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 810 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 989
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 990 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKKMYFKL 1169
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILS+KGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1170 VRCYPRKKQYGNTPSLLQNMAISFLEG 1250
VRCYPRK+QYG+T L ++ I +G
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHILSWKG 327
>ref|XP_003361666.1| PREDICTED: f-box only protein 25-like, partial [Sus scrofa].
Length = 374
Score = 383 bits (984), Expect = e-106
Identities = 195/329 (59%), Positives = 244/329 (74%), Gaps = 5/329 (1%)
Frame = +3
Query: 270 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 434
MPFLGQDWRSPG SW+KT DGWKR E + S+ CN + N E+ ++N+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESWSQELERQSNPCNVSHSIIINSEDEEIYNNE 58
Query: 435 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 614
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 615 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 794
RRFNYVVRLL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L +
Sbjct: 119 IRRFNYVVRLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSS 178
Query: 795 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 974
+LC L++ VGKSVLVGNIN+W+ R+ETIL+WQQQL N+Q+T+ GLT +DLP
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILNWQQQLQNLQMTKQVDGGLTLSDLPW----- 233
Query: 975 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSNKGQLDWKK 1154
D+V+LGQV P L +LSEDR LWKKLCQYHF+E+Q + LILS KG ++WK
Sbjct: 234 ---------DIVTLGQVTPTLSMLSEDRHLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 284
Query: 1155 MYFKLVRCYPRKKQYGNTPSLLQNMAISF 1241
MYF L + YP K+QYG+T ++ +I F
Sbjct: 285 MYFALQKHYPTKEQYGDTLHFCRHCSILF 313
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,732,623
Number of extensions: 883307
Number of successful extensions: 5729
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5532
Number of HSP's successfully gapped: 2
Length of query: 423
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 321
Effective length of database: 8,804,438
Effective search space: 2826224598
Effective search space used: 2826224598
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002056
(1269 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 751 0.0
gb|GL894993.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 1e-08
>Sscrofa_Chr04
|| Length = 143465943
Score = 751 bits (379), Expect = 0.0
Identities = 379/379 (100%)
Strand = Plus / Plus
Query: 7 gcggcccgggataaatacagcggccgggacctcagcgcagcactccagcgagccccgcgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16638960 gcggcccgggataaatacagcggccgggacctcagcgcagcactccagcgagccccgcgc 16639019
Query: 67 gcccggcgaccctccacagcacccttcgcgagcgcagggaccccgctccgcaccccagat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639020 gcccggcgaccctccacagcacccttcgcgagcgcagggaccccgctccgcaccccagat 16639079
Query: 127 cccgcagccctccacacaggttccctgaagccgctccctcaccggccccagcacccccgt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639080 cccgcagccctccacacaggttccctgaagccgctccctcaccggccccagcacccccgt 16639139
Query: 187 ccgagcatccgcccagggcggcgcgtccccgaggccgcccggccggtcctgtccatcagt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639140 ccgagcatccgcccagggcggcgcgtccccgaggccgcccggccggtcctgtccatcagt 16639199
Query: 247 ccgtcgcgtccgtttgcagtgccatgccattcctcgggcaggactggcggtcccccgggc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639200 ccgtcgcgtccgtttgcagtgccatgccattcctcgggcaggactggcggtcccccgggc 16639259
Query: 307 agagctgggtgaagacagccgatggctggaagcgcttcctggatgagaagagtggcagct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639260 agagctgggtgaagacagccgatggctggaagcgcttcctggatgagaagagtggcagct 16639319
Query: 367 tcgtgagcgacctcagcag 385
|||||||||||||||||||
Sbjct: 16639320 tcgtgagcgacctcagcag 16639338
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 734 agtgcttgaagaccagcaaaacatcagactgataagggaactcctccagaccctctacac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660478 agtgcttgaagaccagcaaaacatcagactgataagggaactcctccagaccctctacac 16660537
Query: 794 gtccctgtgcacactggtccagagagtcggcaagtccgtgctggtcgggaacattaacat 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660538 gtccctgtgcacactggtccagagagtcggcaagtccgtgctggtcgggaacattaacat 16660597
Query: 854 gtgggtgtatcggatggagacgattctacactggcagcagcagctgaacaacatccagat 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660598 gtgggtgtatcggatggagacgattctacactggcagcagcagctgaacaacatccagat 16660657
Query: 914 caccagg 920
|||||||
Sbjct: 16660658 caccagg 16660664
Score = 238 bits (120), Expect = 6e-60
Identities = 142/148 (95%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 920 gcctgccttcaaaggcctcaccttcaccgacctgcctctgtgtttgcaactgaacatcat 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16666944 gcctgccttcaaaggcctcaccttcaccgacctgcctctgtgtttgcaactgaacatcat 16667003
Query: 980 gcaaaggctaagtgatggccgggacctggtcagcctg-ggccaggtggcccccgacctgc 1038
||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||
Sbjct: 16667004 gcaaaggctaagtgatggccgggacctggtcagcctgaggctaggtggtcccagacctgc 16667063
Query: 1039 acgtgctcagcgaggaccggctcctgtg 1066
||||||||||||| |||||||||||||
Sbjct: 16667064 acgtgctcagcgataaccggctcctgtg 16667091
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 384 agttactgcaacaaggaagtatacaataaggagaatcttttcaacagcctgaactatgat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16645224 agttactgcaacaaggaagtatacaataaggagaatcttttcaacagcctgaactatgat 16645283
Query: 444 gttgcggccaagaagagaaagaaggacatgctgaacagcaaaaccaaaactcagt 498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16645284 gttgcggccaagaagagaaagaaggacatgctgaacagcaaaaccaaaactcagt 16645338
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 547 agcgccatggatactgcactttgggggaagctttcaacaggctggacttctcgactgcca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16647320 agcgccatggatactgcactttgggggaagctttcaacaggctggacttctcgactgcca 16647379
Query: 607 ttctagattccagaagattcaactatgtcgtacgg 641
|||||||||||||||||||||||||||||||||||
Sbjct: 16647380 ttctagattccagaagattcaactatgtcgtacgg 16647414
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 641 gctgttggaactgatagcgaagtcacagctcacatccctgagtggcattgcccaaaagaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659537 gctgttggaactgatagcgaagtcacagctcacatccctgagtggcattgcccaaaagaa 16659596
Query: 701 cttcatgaacattttggaaaaagtggtactgaaag 735
|||||||||||||||||||||||||||||||||||
Sbjct: 16659597 cttcatgaacattttggaaaaagtggtactgaaag 16659631
Score = 182 bits (92), Expect = 3e-43
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 1102 agatccgcaagcgattaattttgtcaaacaaaggacagctggattggaagaaaatgtatt 1161
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 16668143 agatccgcaagcgattaattttgtcagacaaaggacagctggattggaagaagatgtatt 16668202
Query: 1162 ttaaacttgtgcgatgctaccctcggaaaaagcaatatggaaacaccc 1209
||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 16668203 ttaaacttgtgcgatgctaccctcggaaagagcaatatggagacaccc 16668250
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 499 atttccaccaagaaaaatggatctatgttcacaaaggaagtactaaagag 548
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16646162 atttccaccaagaaaaatggatctatgttcacaaaggaagtactaaagag 16646211
>gb|GL894993.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3602
Length = 36099
Score = 67.9 bits (34), Expect = 1e-08
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1042 tgctcagcgaggaccggctcctgtggaagaaactctgccagtaccacttc 1091
|||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2081 tgctcagcgaggaccggcatctgtggaagaagctgtgccagtaccacttc 2032
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,915,725
Number of extensions: 244
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 9
Length of query: 1269
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1248
Effective length of database: 2,808,413,156
Effective search space: 3504899618688
Effective search space used: 3504899618688
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)