Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039620.1| F-box only protein 32 [Bos taurus]. 726 0.0
Alignment gi|NP_001069679.1| F-box only protein 25 [Bos taurus]. 449 e-126
>ref|NP_001039620.1| F-box only protein 32 [Bos taurus].
Length = 355
Score = 726 bits (1875), Expect = 0.0
Identities = 351/355 (98%), Positives = 353/355 (99%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDL SYC+KEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLGSYCSKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
RCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCS+SLSPQDFINLFKF
Sbjct: 301 ARCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSISLSPQDFINLFKF 355
>ref|NP_001069679.1| F-box only protein 25 [Bos taurus].
Length = 357
Score = 449 bits (1154), Expect = e-126
Identities = 223/360 (61%), Positives = 275/360 (76%), Gaps = 5/360 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 765
MPFLGQDWRSPG SW+KT DGWKR D S + +S C+ + N E+ +F++
Sbjct: 1 MPFLGQDWRSPGWSWMKTEDGWKR-CDAWSQELEGE-NSQCDIGHGIILNSEDEEIFSNE 58
Query: 766 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 945
++ A+KKRKKD + T TQ F++E WIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEFASKKRKKDHFRNDTNTQCFYRENWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQD 118
Query: 946 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 1125
RRFNYVVRLL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL D QN RLI++LLQ L +
Sbjct: 119 IRRFNYVVRLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLGDHQNPRLIKDLLQDLSS 178
Query: 1126 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 1305
+LC L++ VGKSVLVGNIN+W+ R+ET+L WQQQL N+Q+T GLT +DLP+ + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETVLRWQQQLQNLQMTE-VDSGLTLSDLPVHMLSN 237
Query: 1306 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK 1485
I+ R SDG D+V+LGQV P L LSEDR LWKKLCQYHF E+Q + LILS+KG ++WK
Sbjct: 238 ILYRFSDGWDIVTLGQVTPTLSALSEDRQLWKKLCQYHFGEKQFCRHLILSEKGHVEWKL 297
Query: 1486 MYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
MYF L + YP KEQYGDTL CRHC IL WK + HPCTA +P+SC +SPQ FI+LFK+
Sbjct: 298 MYFALQKHYPTKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKY 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,318,785
Number of extensions: 2257685
Number of successful extensions: 13252
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 12738
Number of HSP's successfully gapped: 2
Length of query: 692
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,074,782
Effective search space: 8205597906
Effective search space used: 8205597906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532324.2| PREDICTED: similar to F-box only protein 32 iso... 727 0.0
Alignment gi|XP_861725.1| PREDICTED: similar to F-box only protein 32 iso... 719 0.0
Alignment gi|XP_861780.1| PREDICTED: similar to F-box only protein 32 iso... 711 0.0
Alignment gi|XP_861752.1| PREDICTED: similar to F-box only protein 32 iso... 682 0.0
Alignment gi|XP_861693.1| PREDICTED: similar to F-box only protein 32 iso... 673 0.0
Alignment gi|XP_859852.1| PREDICTED: similar to F-box only protein 25 iso... 470 e-132
Alignment gi|XP_859924.1| PREDICTED: similar to F-box only protein 25 iso... 457 e-128
Alignment gi|XP_859890.1| PREDICTED: similar to F-box only protein 25 iso... 456 e-128
Alignment gi|XP_859821.1| PREDICTED: similar to F-box only protein 25 iso... 455 e-128
Alignment gi|XP_859958.1| PREDICTED: similar to F-box only protein 25 iso... 454 e-127
>ref|XP_532324.2| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 1
[Canis familiaris].
Length = 355
Score = 727 bits (1877), Expect = 0.0
Identities = 352/355 (99%), Positives = 353/355 (99%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG FVSDL SYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGGFVSDLGSYCNKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 355
>ref|XP_861725.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 3
[Canis familiaris].
Length = 366
Score = 719 bits (1855), Expect = 0.0
Identities = 352/366 (96%), Positives = 353/366 (96%), Gaps = 11/366 (3%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG FVSDL SYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGGFVSDLGSYCNKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWK-----------GTDHPCTANNPESCSVSLSPQDF 1647
VRCYPRKEQYGDTLQLCRHCHILSWK GTDHPCTANNPESCSVSLSPQDF
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHILSWKVFRPNHDVPFQGTDHPCTANNPESCSVSLSPQDF 360
Query: 1648 INLFKF 1665
INLFKF
Sbjct: 361 INLFKF 366
>ref|XP_861780.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 5
[Canis familiaris].
Length = 353
Score = 711 bits (1835), Expect = 0.0
Identities = 346/355 (97%), Positives = 349/355 (98%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSG + + YCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGEISA--AHYCNKEVYNKENLFNSLNYDVA 58
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 59 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 118
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 119 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 178
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQRL
Sbjct: 179 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQRL 238
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 239 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 298
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 299 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 353
>ref|XP_861752.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 4
[Canis familiaris].
Length = 356
Score = 682 bits (1759), Expect = 0.0
Identities = 335/356 (94%), Positives = 338/356 (94%), Gaps = 1/356 (0%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLD-EKSGSFVSDLSSYCNKEVYNKENLFNSLNYDV 777
MPFLGQDWRSPGQSWVKTADGW K + S +EVYNKENLFNSLNYDV
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWNSLFGCSKCTNCESSQCHLGRREVYNKENLFNSLNYDV 60
Query: 778 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 957
AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF
Sbjct: 61 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 120
Query: 958 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 1137
NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT
Sbjct: 121 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 180
Query: 1138 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQR 1317
LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQR
Sbjct: 181 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQR 240
Query: 1318 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 1497
LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK
Sbjct: 241 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 300
Query: 1498 LVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
LVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 301 LVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 356
>ref|XP_861693.1| PREDICTED: similar to F-box only protein 32 isoform 1 isoform 2
[Canis familiaris].
Length = 367
Score = 673 bits (1737), Expect = 0.0
Identities = 335/367 (91%), Positives = 338/367 (92%), Gaps = 12/367 (3%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLD-EKSGSFVSDLSSYCNKEVYNKENLFNSLNYDV 777
MPFLGQDWRSPGQSWVKTADGW K + S +EVYNKENLFNSLNYDV
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWNSLFGCSKCTNCESSQCHLGRREVYNKENLFNSLNYDV 60
Query: 778 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 957
AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF
Sbjct: 61 AAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRF 120
Query: 958 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 1137
NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT
Sbjct: 121 NYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCT 180
Query: 1138 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQR 1317
LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAF+GLTFTDLPLCLQLNIMQR
Sbjct: 181 LVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFQGLTFTDLPLCLQLNIMQR 240
Query: 1318 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 1497
LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK
Sbjct: 241 LSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFK 300
Query: 1498 LVRCYPRKEQYGDTLQLCRHCHILSWK-----------GTDHPCTANNPESCSVSLSPQD 1644
LVRCYPRKEQYGDTLQLCRHCHILSWK GTDHPCTANNPESCSVSLSPQD
Sbjct: 301 LVRCYPRKEQYGDTLQLCRHCHILSWKVFRPNHDVPFQGTDHPCTANNPESCSVSLSPQD 360
Query: 1645 FINLFKF 1665
FINLFKF
Sbjct: 361 FINLFKF 367
>ref|XP_859852.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 4
[Canis familiaris].
Length = 355
Score = 470 bits (1210), Expect = e-132
Identities = 223/355 (62%), Positives = 278/355 (78%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPG SW+KT DGWKRF G++V+ S C + ++ E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRFGRHSRGTWVAQWLSICLQLKFDDEEIFSNEEQKYT 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D RRF
Sbjct: 61 SKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDIRRFT 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++LC L
Sbjct: 121 YVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSSTLCIL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI+ R
Sbjct: 181 IRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNILYRF 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK MYF L
Sbjct: 241 SDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLMYFAL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
+ YP +EQYGDTL CRHC IL WK + HPCTA +P+SC + +SPQ FI+LFKF
Sbjct: 301 QKHYPPREQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFMPVSPQHFIDLFKF 355
>ref|XP_859924.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 6
[Canis familiaris].
Length = 354
Score = 457 bits (1177), Expect = e-128
Identities = 223/361 (61%), Positives = 277/361 (76%), Gaps = 6/361 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRF------LDEKSGSFVSDLSSYCNKEVYNKENLFNS 762
MPFLGQDWRSPG SW+KT DGWKR LD ++ +S L+S + E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPSLSILNS-------DDEEIFSN 53
Query: 763 LNYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAIL 942
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI
Sbjct: 54 EEQKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQ 113
Query: 943 DSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLY 1122
D RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L
Sbjct: 114 DIRRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLS 173
Query: 1123 TSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQL 1302
++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL +
Sbjct: 174 STLCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLN 233
Query: 1303 NIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWK 1482
NI+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK
Sbjct: 234 NILYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWK 293
Query: 1483 KMYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFK 1662
MYF L + YP +EQYGDTL CRHC IL WK + HPCTA +P+SC + +SPQ FI+LFK
Sbjct: 294 LMYFALQKHYPPREQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFMPVSPQHFIDLFK 353
Query: 1663 F 1665
F
Sbjct: 354 F 354
>ref|XP_859890.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 5
[Canis familiaris].
Length = 357
Score = 456 bits (1174), Expect = e-128
Identities = 221/357 (61%), Positives = 272/357 (76%), Gaps = 2/357 (0%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNK--ENLFNSLNYD 774
MPFLGQDWRSPG SW+KT DGWKR + S N + N E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPSLLNLHILNSDDEEIFSNEEQK 60
Query: 775 VAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRR 954
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D RR
Sbjct: 61 YTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDIRR 120
Query: 955 FNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLC 1134
F YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++LC
Sbjct: 121 FTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSSTLC 180
Query: 1135 TLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQ 1314
L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI+
Sbjct: 181 ILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNILY 240
Query: 1315 RLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYF 1494
R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK MYF
Sbjct: 241 RFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLMYF 300
Query: 1495 KLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
L + YP +EQYGDTL CRHC IL WK + HPCTA +P+SC + +SPQ FI+LFKF
Sbjct: 301 ALQKHYPPREQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFMPVSPQHFIDLFKF 357
>ref|XP_859821.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 3
[Canis familiaris].
Length = 357
Score = 455 bits (1171), Expect = e-128
Identities = 223/359 (62%), Positives = 275/359 (76%), Gaps = 4/359 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYD-- 774
MPFLGQDWRSPG SW+KT DGWKR L + ++ S + C E+ N S+ D
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRSLKHRGRTWKSQ--NPCPMELPFWSNRQQSVYLDDR 58
Query: 775 --VAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDS 948
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 CKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQDI 118
Query: 949 RRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTS 1128
RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L ++
Sbjct: 119 RRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSST 178
Query: 1129 LCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNI 1308
LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL + NI
Sbjct: 179 LCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLNNI 238
Query: 1309 MQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKM 1488
+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK M
Sbjct: 239 LYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWKLM 298
Query: 1489 YFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
YF L + YP +EQYGDTL CRHC IL WK + HPCTA +P+SC + +SPQ FI+LFKF
Sbjct: 299 YFALQKHYPPREQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFMPVSPQHFIDLFKF 357
>ref|XP_859958.1| PREDICTED: similar to F-box only protein 25 isoform 2 isoform 7
[Canis familiaris].
Length = 358
Score = 454 bits (1169), Expect = e-127
Identities = 222/361 (61%), Positives = 274/361 (75%), Gaps = 6/361 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRF------LDEKSGSFVSDLSSYCNKEVYNKENLFNS 762
MPFLGQDWRSPG SW+KT DGWKR LD ++ S N + E +F++
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRCESWSRDLDRENNPCNVSHSIILNSD---DEEIFSN 57
Query: 763 LNYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAIL 942
+KKRKKD + T TQ F++EKWIYVHK ST+ERHGYCTLGEAFNRLDFS+AI
Sbjct: 58 EEQKYTSKKRKKDHFRNDTNTQCFYREKWIYVHKESTRERHGYCTLGEAFNRLDFSSAIQ 117
Query: 943 DSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLY 1122
D RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L
Sbjct: 118 DIRRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLS 177
Query: 1123 TSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQL 1302
++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL N+Q+T+ GLT +DLPL +
Sbjct: 178 STLCILIRGVGKSVLVGNINIWICRLETILRWQQQLQNLQVTKQVNDGLTLSDLPLHMLN 237
Query: 1303 NIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWK 1482
NI+ R SDG D+V+LGQV P L VLSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK
Sbjct: 238 NILYRFSDGWDIVTLGQVTPTLSVLSEDRQLWKRLCQYHFAEQQFCRHLILSEKGHVEWK 297
Query: 1483 KMYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFK 1662
MYF L + YP +EQYGDTL CRHC IL WK + HPCTA +P+SC + +SPQ FI+LFK
Sbjct: 298 LMYFALQKHYPPREQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFMPVSPQHFIDLFK 357
Query: 1663 F 1665
F
Sbjct: 358 F 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,593,039
Number of extensions: 2316544
Number of successful extensions: 13863
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 13385
Number of HSP's successfully gapped: 12
Length of query: 692
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 582
Effective length of database: 15,207,544
Effective search space: 8850790608
Effective search space used: 8850790608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_478136.1| F-box only protein 32 isoform 1 [Homo sapiens]. 728 0.0
Alignment gi|NP_904356.1| F-box only protein 25 isoform 2 [Homo sapiens]. 462 e-130
Alignment gi|NP_904357.1| F-box only protein 25 isoform 1 [Homo sapiens]. 454 e-127
Alignment gi|NP_680482.1| F-box only protein 32 isoform 2 [Homo sapiens]. 432 e-121
Alignment gi|NP_036305.2| F-box only protein 25 isoform 3 [Homo sapiens]. 367 e-101
Alignment gi|NP_001229392.1| F-box only protein 32 isoform 3 [Homo sapien... 295 8e-80
>ref|NP_478136.1| F-box only protein 32 isoform 1 [Homo sapiens].
Length = 355
Score = 728 bits (1879), Expect = 0.0
Identities = 352/355 (99%), Positives = 354/355 (99%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQ+WVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQ APDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
VRCYPRKEQYGDTLQLC+HCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 301 VRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 355
>ref|NP_904356.1| F-box only protein 25 isoform 2 [Homo sapiens].
Length = 358
Score = 462 bits (1188), Expect = e-130
Identities = 224/360 (62%), Positives = 279/360 (77%), Gaps = 5/360 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 765
MPFLGQDWRSPG SW+KT DGWKR E + ++ CN + N E+ +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE 58
Query: 766 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 945
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 946 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 1125
RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D N RLI++LLQ L +
Sbjct: 119 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS 178
Query: 1126 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 1305
+LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL ++Q+T+ GLT +DLPL + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN 238
Query: 1306 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK 1485
I+ R SDG D+++LGQV P L++LSEDR LWKKLCQYHF+E+Q + LILS+KG ++WK
Sbjct: 239 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 298
Query: 1486 MYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
MYF L + YP KEQYGDTL CRHC IL WK + HPCTA +P+SC +SPQ FI+LFKF
Sbjct: 299 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPQHFIDLFKF 358
>ref|NP_904357.1| F-box only protein 25 isoform 1 [Homo sapiens].
Length = 367
Score = 454 bits (1168), Expect = e-127
Identities = 224/369 (60%), Positives = 279/369 (75%), Gaps = 14/369 (3%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 765
MPFLGQDWRSPG SW+KT DGWKR E + ++ CN + N E+ +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESCSQKLERENNRCNISHSIILNSEDGEIFNNE 58
Query: 766 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 945
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 946 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 1125
RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D N RLI++LLQ L +
Sbjct: 119 IRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHHNPRLIKDLLQDLSS 178
Query: 1126 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 1305
+LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL ++Q+T+ GLT +DLPL + N
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQDLQMTKQVNNGLTLSDLPLHMLNN 238
Query: 1306 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK 1485
I+ R SDG D+++LGQV P L++LSEDR LWKKLCQYHF+E+Q + LILS+KG ++WK
Sbjct: 239 ILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 298
Query: 1486 MYFKLVRCYPRKEQYGDTLQLCRHCHILSW---------KGTDHPCTANNPESCSVSLSP 1638
MYF L + YP KEQYGDTL CRHC IL W K + HPCTA +P+SC +SP
Sbjct: 299 MYFALQKHYPAKEQYGDTLHFCRHCSILFWKDYHLALLFKDSGHPCTAADPDSCFTPVSP 358
Query: 1639 QDFINLFKF 1665
Q FI+LFKF
Sbjct: 359 QHFIDLFKF 367
>ref|NP_680482.1| F-box only protein 32 isoform 2 [Homo sapiens].
Length = 210
Score = 432 bits (1111), Expect = e-121
Identities = 208/210 (99%), Positives = 209/210 (99%)
Frame = +1
Query: 1036 MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH 1215
MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH
Sbjct: 1 MNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILH 60
Query: 1216 WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLL 1395
WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQ APDLHVLSEDRLL
Sbjct: 61 WQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLL 120
Query: 1396 WKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCRHCHILSW 1575
WKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLC+HCHILSW
Sbjct: 121 WKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSW 180
Query: 1576 KGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
KGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 181 KGTDHPCTANNPESCSVSLSPQDFINLFKF 210
>ref|NP_036305.2| F-box only protein 25 isoform 3 [Homo sapiens].
Length = 291
Score = 367 bits (941), Expect = e-101
Identities = 173/263 (65%), Positives = 215/263 (81%)
Frame = +1
Query: 877 ERHGYCTLGEAFNRLDFSTAILDSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKV 1056
+RHGYCTLGEAFNRLDFS+AI D RRFNYVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+
Sbjct: 29 KRHGYCTLGEAFNRLDFSSAIQDIRRFNYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKI 88
Query: 1057 VLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNN 1236
V KVL+D N RLI++LLQ L ++LC L++ VGKSVLVGNIN+W+ R+ETIL WQQQL +
Sbjct: 89 VQKVLDDHHNPRLIKDLLQDLSSTLCILIRGVGKSVLVGNINIWICRLETILAWQQQLQD 148
Query: 1237 IQITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQY 1416
+Q+T+ GLT +DLPL + NI+ R SDG D+++LGQV P L++LSEDR LWKKLCQY
Sbjct: 149 LQMTKQVNNGLTLSDLPLHMLNNILYRFSDGWDIITLGQVTPTLYMLSEDRQLWKKLCQY 208
Query: 1417 HFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPC 1596
HF+E+Q + LILS+KG ++WK MYF L + YP KEQYGDTL CRHC IL WK + HPC
Sbjct: 209 HFAEKQFCRHLILSEKGHIEWKLMYFALQKHYPAKEQYGDTLHFCRHCSILFWKDSGHPC 268
Query: 1597 TANNPESCSVSLSPQDFINLFKF 1665
TA +P+SC +SPQ FI+LFKF
Sbjct: 269 TAADPDSCFTPVSPQHFIDLFKF 291
>ref|NP_001229392.1| F-box only protein 32 isoform 3 [Homo sapiens].
Length = 262
Score = 295 bits (756), Expect = 8e-80
Identities = 137/141 (97%), Positives = 139/141 (98%)
Frame = +1
Query: 1243 ITRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHF 1422
+ RPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQ APDLHVLSEDRLLWKKLCQYHF
Sbjct: 122 VVRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHF 181
Query: 1423 SERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTA 1602
SERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLC+HCHILSWKGTDHPCTA
Sbjct: 182 SERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCTA 241
Query: 1603 NNPESCSVSLSPQDFINLFKF 1665
NNPESCSVSLSPQDFINLFKF
Sbjct: 242 NNPESCSVSLSPQDFINLFKF 262
Score = 263 bits (672), Expect = 5e-70
Identities = 123/124 (99%), Positives = 124/124 (100%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQ+WVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQNWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVR 972
YVVR
Sbjct: 121 YVVR 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 81,082,644
Number of extensions: 2272099
Number of successful extensions: 12762
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 12317
Number of HSP's successfully gapped: 7
Length of query: 692
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 583
Effective length of database: 14,704,088
Effective search space: 8572483304
Effective search space used: 8572483304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080622.1| F-box only protein 32 [Mus musculus]. 709 0.0
Alignment gi|NP_080061.1| F-box only protein 25 [Mus musculus]. 449 e-126
>ref|NP_080622.1| F-box only protein 32 [Mus musculus].
Length = 355
Score = 709 bits (1829), Expect = 0.0
Identities = 342/355 (96%), Positives = 351/355 (98%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVY+KENLF+SLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYSKENLFSSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKD+ NSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDIQNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLN+IQI+RPAFKGLT TDLP+CLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNSIQISRPAFKGLTITDLPVCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQ APDLHVLSEDRLLWK+LCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQAAPDLHVLSEDRLLWKRLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
VRCYPR+EQYG TLQLC+HCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 301 VRCYPRREQYGVTLQLCKHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 355
>ref|NP_080061.1| F-box only protein 25 [Mus musculus].
Length = 357
Score = 449 bits (1154), Expect = e-126
Identities = 223/359 (62%), Positives = 274/359 (76%), Gaps = 4/359 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYC-NKEVY---NKENLFNSLN 768
MPFLGQDWRSPG SW+KT DGWKR D S S+ S Y N + +E +FN+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKR-CDPCSHELRSEDSQYTINHSIILNSGEEEIFNN-E 58
Query: 769 YDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDS 948
+ AAKKRKK+ + T F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 CEYAAKKRKKEHFGNDTAAHSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQDI 118
Query: 949 RRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTS 1128
RRF YVV+LL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI+ LLQ L ++
Sbjct: 119 RRFTYVVKLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKGLLQDLSST 178
Query: 1129 LCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNI 1308
L LV+ VGKSVLVGNIN+W+ R+ET+L WQQQL N+Q+T+ GLT +DLPL + NI
Sbjct: 179 LGILVRGVGKSVLVGNINIWICRLETVLSWQQQLQNLQVTKQVNTGLTLSDLPLHMLNNI 238
Query: 1309 MQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKM 1488
+ R SDG D+V+LGQV P L++LSEDR LWK+LCQYHF+E+Q + LILS+KG ++WK M
Sbjct: 239 LYRFSDGWDIVTLGQVTPTLYMLSEDRRLWKRLCQYHFAEQQFCRHLILSEKGHIEWKLM 298
Query: 1489 YFKLVRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
YF L + YP KEQYGDTL CRHC IL WK + HPCTA +P+SC +SP+ FI+LFKF
Sbjct: 299 YFTLQKYYPTKEQYGDTLHFCRHCSILFWKDSGHPCTAADPDSCFTPVSPEHFIDLFKF 357
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,765,829
Number of extensions: 1908585
Number of successful extensions: 10555
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10159
Number of HSP's successfully gapped: 2
Length of query: 692
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 584
Effective length of database: 12,373,671
Effective search space: 7226223864
Effective search space used: 7226223864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038053.1| F-box only protein 32 [Sus scrofa]. 732 0.0
Alignment gi|XP_003361666.1| PREDICTED: f-box only protein 25-like, parti... 407 e-113
>ref|NP_001038053.1| F-box only protein 32 [Sus scrofa].
Length = 355
Score = 732 bits (1889), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 780
MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA
Sbjct: 1 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKEVYNKENLFNSLNYDVA 60
Query: 781 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 960
AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN
Sbjct: 61 AKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILDSRRFN 120
Query: 961 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 1140
YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL
Sbjct: 121 YVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTL 180
Query: 1141 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 1320
VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL
Sbjct: 181 VQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLNIMQRL 240
Query: 1321 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 1500
SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL
Sbjct: 241 SDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKL 300
Query: 1501 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 1665
VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF
Sbjct: 301 VRCYPRKEQYGDTLQLCRHCHILSWKGTDHPCTANNPESCSVSLSPQDFINLFKF 355
>ref|XP_003361666.1| PREDICTED: f-box only protein 25-like, partial [Sus scrofa].
Length = 374
Score = 407 bits (1046), Expect = e-113
Identities = 204/331 (61%), Positives = 249/331 (75%), Gaps = 5/331 (1%)
Frame = +1
Query: 601 MPFLGQDWRSPGQSWVKTADGWKRFLDEKSGSFVSDLSSYCNKE---VYNKEN--LFNSL 765
MPFLGQDWRSPG SW+KT DGWKR E + S+ CN + N E+ ++N+
Sbjct: 1 MPFLGQDWRSPGWSWIKTEDGWKRC--ESWSQELERQSNPCNVSHSIIINSEDEEIYNNE 58
Query: 766 NYDVAAKKRKKDMLNSKTKTQYFHQEKWIYVHKGSTKERHGYCTLGEAFNRLDFSTAILD 945
++ A+KKRKKD + T TQ F++EKWIYVHK STKERHGYCTLGEAFNRLDFS+AI D
Sbjct: 59 EHEYASKKRKKDHFRNDTNTQSFYREKWIYVHKESTKERHGYCTLGEAFNRLDFSSAIQD 118
Query: 946 SRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYT 1125
RRFNYVVRLL+LIAKSQLTSLSG+AQKN+ NIL+K+V KVL+D QN RLI++LLQ L +
Sbjct: 119 IRRFNYVVRLLQLIAKSQLTSLSGVAQKNYFNILDKIVQKVLDDHQNPRLIKDLLQDLSS 178
Query: 1126 SLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQITRPAFKGLTFTDLPLCLQLN 1305
+LC L++ VGKSVLVGNIN+W+ R+ETIL+WQQQL N+Q+T+ GLT +DLP
Sbjct: 179 TLCILIRGVGKSVLVGNINIWICRLETILNWQQQLQNLQMTKQVDGGLTLSDLPW----- 233
Query: 1306 IMQRLSDGRDLVSLGQVAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKK 1485
D+V+LGQV P L +LSEDR LWKKLCQYHF+E+Q + LILS+KG ++WK
Sbjct: 234 ---------DIVTLGQVTPTLSMLSEDRHLWKKLCQYHFAEKQFCRHLILSEKGHIEWKL 284
Query: 1486 MYFKLVRCYPRKEQYGDTLQLCRHCHILSWK 1578
MYF L + YP KEQYGDTL CRHC IL WK
Sbjct: 285 MYFALQKHYPTKEQYGDTLHFCRHCSILFWK 315
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,110,806
Number of extensions: 1451877
Number of successful extensions: 8419
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8136
Number of HSP's successfully gapped: 2
Length of query: 692
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 586
Effective length of database: 8,704,850
Effective search space: 5101042100
Effective search space used: 5101042100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002057
(2076 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1356 0.0
gb|GL894993.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 2e-08
>Sscrofa_Chr04
|| Length = 143465943
Score = 1356 bits (684), Expect = 0.0
Identities = 708/717 (98%), Gaps = 1/717 (0%)
Strand = Plus / Plus
Query: 1 gtcgagcctcctcctccctgcacctcgccaggccaagagctgcaggaggacggtgtgcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 16638622 gtcgagcctcctcctccctgcacctcgccaggccaagagctgcagaaggacggtgtgcag 16638681
Query: 61 tttcccgagcgcccggcctcgctctcccagctgcagcagctgccctggc-ggggggagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16638682 tttcccgagcgcccggcctcgctctcccagctgcagcagctgccctggcgggggggagaa 16638741
Query: 120 ggagcgcgaggggccaggggtggaggggcagtgggcgccccgatccgcagcgcggcttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16638742 ggagcgcgaggggccaggggtggaggggcagtgggcgccccgatccgcagcgcggcttca 16638801
Query: 180 agtttccaccagcgagcggttgtgcaacagccagaggagcaagagccgcgggcgcctcgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16638802 agtttccaccagcgagcggttgtgcaacagccagaggagcaagagccgcgggcgcctcgg 16638861
Query: 240 aaaacaagccgagcccataaacaaagccacgtggcctccaggctnnnnnnnccgggctaa 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16638862 aaaacaagccgagcccataaacaaagccacgtggcctccaggctgggggggccgggctaa 16638921
Query: 300 gagcaggcggctcttccggcaacaaagagccggggccagcggcccgggataaatacagcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16638922 gagcaggcggctcttccggcaacaaagagccggggccagcggcccgggataaatacagcg 16638981
Query: 360 gccgggacctcagcgcagcactccagcgagccccgcgcgcccggcgaccctccacagcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16638982 gccgggacctcagcgcagcactccagcgagccccgcgcgcccggcgaccctccacagcac 16639041
Query: 420 ccttcgcgagcgcagggaccccgctccgcaccccagatcccgcagccctccacacaggtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639042 ccttcgcgagcgcagggaccccgctccgcaccccagatcccgcagccctccacacaggtt 16639101
Query: 480 ccctgaagccgctccctcaccggccccagcacccccgtccgagcatccgcccagggcggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639102 ccctgaagccgctccctcaccggccccagcacccccgtccgagcatccgcccagggcggc 16639161
Query: 540 gcgtccccgaggccgcccggccggtcctgtccatcagtccgtcgcgtccgtttgcagtgc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639162 gcgtccccgaggccgcccggccggtcctgtccatcagtccgtcgcgtccgtttgcagtgc 16639221
Query: 600 catgccattcctcgggcaggactggcggtcccccgggcagagctgggtgaagacagccga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639222 catgccattcctcgggcaggactggcggtcccccgggcagagctgggtgaagacagccga 16639281
Query: 660 tggctggaagcgcttcctggatgagaagagtggcagcttcgtgagcgacctcagcag 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16639282 tggctggaagcgcttcctggatgagaagagtggcagcttcgtgagcgacctcagcag 16639338
Score = 848 bits (428), Expect = 0.0
Identities = 475/488 (97%), Gaps = 2/488 (0%)
Strand = Plus / Plus
Query: 1577 agggcaccgatcacccctgcacagccaataacccagagagctgctccgtgtcgctgtcac 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16668965 agggcaccgatcacccctgcacagccaataacccagagagctgctccgtgtcgctgtcac 16669024
Query: 1637 cccaggactttatcaacctgttcaagttctgaatcccggctcatgaccgcaccgcagaag 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669025 cccaggactttatcaacctgttcaagttctgaatcccggctcatgaccgcaccgcagaag 16669084
Query: 1697 ggtttccctgctgattggatggctggggatacagaatttggatgcttcatttgtaaatag 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669085 ggtttccctgctgattggatggctggggatacagaatttggatgcttcatttgtaaatag 16669144
Query: 1757 cgtacattttaaacattggctcgaaacttctgagataagtcattgagaggacactggcgg 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669145 cgtacattttaaacattggctcgaaacttctgagataagtcattgagaggacactggcgg 16669204
Query: 1817 ggaatttaagcgtatggacttctcgttagaattggtatggaaaagcaggaatactgtaaa 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16669205 ggaatttaagcgtatggacttctcgttagaattggtatggaaaagcaggaatactgtaaa 16669264
Query: 1877 taaactgttttttccctaaagatttgccagccagactatgaggtaggagttctatttcat 1936
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16669265 taaactgttttttccctaaagatttgccagcaagactatgaggtaggagttctatttcat 16669324
Query: 1937 gggtgaaaattgaattttcttgatgttcacggaaac-cccttacagatccctaaagatgt 1995
|||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 16669325 gggtgaaaatggaattttcttgatgttcacggaaacgcctttacagatccctagagatgt 16669384
Query: 1996 ggaaaagaaggggcaaactcgaacacaaaaaaggatgctctttgtttacaatggtgaaaa 2055
|||| | |||| |||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 16669385 ggaagaagagggcaaaactcgaacacaagataggatgctctttgtttacaat-gtgaaaa 16669443
Query: 2056 tgtgttgg 2063
||||||||
Sbjct: 16669444 tgtgttgg 16669451
Score = 371 bits (187), Expect = 1e-99
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 1065 agtgcttgaagaccagcaaaacatcagactgataagggaactcctccagaccctctacac 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660478 agtgcttgaagaccagcaaaacatcagactgataagggaactcctccagaccctctacac 16660537
Query: 1125 gtccctgtgcacactggtccagagagtcggcaagtccgtgctggtcgggaacattaacat 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660538 gtccctgtgcacactggtccagagagtcggcaagtccgtgctggtcgggaacattaacat 16660597
Query: 1185 gtgggtgtatcggatggagacgattctacactggcagcagcagctgaacaacatccagat 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16660598 gtgggtgtatcggatggagacgattctacactggcagcagcagctgaacaacatccagat 16660657
Query: 1245 caccagg 1251
|||||||
Sbjct: 16660658 caccagg 16660664
Score = 291 bits (147), Expect = 8e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 1433 agatccgcaagcgattaattttgtcagacaaaggacagctggattggaagaagatgtatt 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16668143 agatccgcaagcgattaattttgtcagacaaaggacagctggattggaagaagatgtatt 16668202
Query: 1493 ttaaacttgtgcgatgctaccctcggaaagagcaatatggagacacccttcagctctgca 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16668203 ttaaacttgtgcgatgctaccctcggaaagagcaatatggagacacccttcagctctgca 16668262
Query: 1553 gacactgccacattctttcctggaagg 1579
|||||||||||||||||||||||||||
Sbjct: 16668263 gacactgccacattctttcctggaagg 16668289
Score = 238 bits (120), Expect = 1e-59
Identities = 142/148 (95%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 1251 gcctgccttcaaaggcctcaccttcaccgacctgcctctgtgtttgcaactgaacatcat 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16666944 gcctgccttcaaaggcctcaccttcaccgacctgcctctgtgtttgcaactgaacatcat 16667003
Query: 1311 gcaaaggctaagtgatggccgggacctggtcagcctg-ggccaggtggcccccgacctgc 1369
||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||
Sbjct: 16667004 gcaaaggctaagtgatggccgggacctggtcagcctgaggctaggtggtcccagacctgc 16667063
Query: 1370 acgtgctcagcgaggaccggctcctgtg 1397
||||||||||||| |||||||||||||
Sbjct: 16667064 acgtgctcagcgataaccggctcctgtg 16667091
Score = 228 bits (115), Expect = 1e-56
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 715 agttactgcaacaaggaagtatacaataaggagaatcttttcaacagcctgaactatgat 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16645224 agttactgcaacaaggaagtatacaataaggagaatcttttcaacagcctgaactatgat 16645283
Query: 775 gttgcggccaagaagagaaagaaggacatgctgaacagcaaaaccaaaactcagt 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16645284 gttgcggccaagaagagaaagaaggacatgctgaacagcaaaaccaaaactcagt 16645338
Score = 188 bits (95), Expect = 8e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 878 agcgccatggatactgcactttgggggaagctttcaacaggctggacttctcgactgcca 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16647320 agcgccatggatactgcactttgggggaagctttcaacaggctggacttctcgactgcca 16647379
Query: 938 ttctagattccagaagattcaactatgtcgtacgg 972
|||||||||||||||||||||||||||||||||||
Sbjct: 16647380 ttctagattccagaagattcaactatgtcgtacgg 16647414
Score = 188 bits (95), Expect = 8e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 972 gctgttggaactgatagcgaagtcacagctcacatccctgagtggcattgcccaaaagaa 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16659537 gctgttggaactgatagcgaagtcacagctcacatccctgagtggcattgcccaaaagaa 16659596
Query: 1032 cttcatgaacattttggaaaaagtggtactgaaag 1066
|||||||||||||||||||||||||||||||||||
Sbjct: 16659597 cttcatgaacattttggaaaaagtggtactgaaag 16659631
Score = 99.6 bits (50), Expect = 6e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 830 atttccaccaagaaaaatggatctatgttcacaaaggaagtactaaagag 879
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16646162 atttccaccaagaaaaatggatctatgttcacaaaggaagtactaaagag 16646211
>gb|GL894993.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3602
Length = 36099
Score = 67.9 bits (34), Expect = 2e-08
Identities = 46/50 (92%)
Strand = Plus / Minus
Query: 1373 tgctcagcgaggaccggctcctgtggaagaaactctgccagtaccacttc 1422
|||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2081 tgctcagcgaggaccggcatctgtggaagaagctgtgccagtaccacttc 2032
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,191,625
Number of extensions: 393
Number of successful extensions: 393
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 10
Length of query: 2076
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2054
Effective length of database: 2,808,408,574
Effective search space: 5768471210996
Effective search space used: 5768471210996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)