Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020497.1| serglycin [Bos taurus]. 162 8e-40
>ref|NP_001020497.1| serglycin [Bos taurus].
Length = 150
Score = 162 bits (410), Expect = 8e-40
Identities = 87/151 (57%), Positives = 102/151 (67%)
Frame = +2
Query: 566 MQVLFRCSGXXXXXXXXXXXDSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP 745
MQVL +C+ SSVQGSPV++A YQ SPDS+S NCI+EKG FD+L
Sbjct: 1 MQVLLQCA-RLVLALAFILFSSSVQGSPVQRAGYQCNPDSPDSNSANCIEEKGTAFDILR 59
Query: 746 GESNRILPPRTDPFSMTRSKNLNDVFPLSEDFXXXXXXXXXXXXXLNEIEQEYQPVEENN 925
GES+RI PPRTD + SKNLN+VFPLSED LNEIEQEYQPVEEN+
Sbjct: 60 GESSRIPPPRTDISPLMNSKNLNEVFPLSEDISGSGSGAESGSGFLNEIEQEYQPVEEND 119
Query: 926 AFYDNFRSLERNLPSDNQDLGLDGQEDDFTV 1018
AFY FRS +RN+PS NQDLG DG E+DFT+
Sbjct: 120 AFYYTFRSRKRNVPSYNQDLGQDGPEEDFTI 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,209,035
Number of extensions: 1381877
Number of successful extensions: 2062
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2061
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 410
Effective length of database: 14,140,958
Effective search space: 5797792780
Effective search space used: 5797792780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851767.1| PREDICTED: similar to Secretory granule proteog... 180 4e-45
>ref|XP_851767.1| PREDICTED: similar to Secretory granule proteoglycan core protein
precursor (Platelet proteoglycan core protein) (P.PG)
(Hematopoetic proteoglycan core protein) (Serglycin)
[Canis familiaris].
Length = 158
Score = 180 bits (456), Expect = 4e-45
Identities = 93/159 (58%), Positives = 109/159 (68%), Gaps = 8/159 (5%)
Frame = +2
Query: 566 MQVLFRCSGXXXXXXXXXXXDSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP 745
MQ+L + S D SVQGSPV++A YQWV CSPDS+S NCIDEK P+FDLLP
Sbjct: 1 MQLLLQGSRLVLALALLLVLDFSVQGSPVKRATYQWVHCSPDSNSANCIDEKEPMFDLLP 60
Query: 746 GESNRILPPRTDPFSMTRSKNLNDVFPLSEDF--------XXXXXXXXXXXXXLNEIEQE 901
GESNRI PP TD SM+RS+NLND+FP+SED+ L E+EQE
Sbjct: 61 GESNRIFPP-TDRSSMSRSQNLNDIFPISEDYFGSGSGSGSGSGSGSGSGSGFLPELEQE 119
Query: 902 YQPVEENNAFYDNFRSLERNLPSDNQDLGLDGQEDDFTV 1018
YQPV+ENN FYDNFR L+RNLPSDNQDLG DG E+DF +
Sbjct: 120 YQPVDENNDFYDNFRPLKRNLPSDNQDLGQDGPEEDFII 158
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,242,803
Number of extensions: 924455
Number of successful extensions: 2178
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 410
Effective length of database: 15,307,552
Effective search space: 6276096320
Effective search space used: 6276096320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002718.2| serglycin precursor [Homo sapiens]. 161 1e-39
>ref|NP_002718.2| serglycin precursor [Homo sapiens].
Length = 158
Score = 161 bits (408), Expect = 1e-39
Identities = 82/155 (52%), Positives = 105/155 (67%), Gaps = 6/155 (3%)
Frame = +2
Query: 566 MQVLFRCSGXXXXXXXXXXXDSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP 745
MQ L +CS +SSVQG P R+ARYQWVRC+PDS+S NC++EKGP+F+LLP
Sbjct: 2 MQKLLKCSRLVLALALILVLESSVQGYPTRRARYQWVRCNPDSNSANCLEEKGPMFELLP 61
Query: 746 GESNRILPPRTDPFSMTRSKNLNDVFPLSEDF------XXXXXXXXXXXXXLNEIEQEYQ 907
GESN+I RTD F TR ++LN +FPLSED+ L E+EQ+YQ
Sbjct: 62 GESNKIPRLRTDLFPKTRIQDLNRIFPLSEDYSGSGFGSGSGSGSGSGSGFLTEMEQDYQ 121
Query: 908 PVEENNAFYDNFRSLERNLPSDNQDLGLDGQEDDF 1012
V+E++AF+DN RSL+RNLPSD+QDLG G E+DF
Sbjct: 122 LVDESDAFHDNLRSLDRNLPSDSQDLGQHGLEEDF 156
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,591,348
Number of extensions: 884890
Number of successful extensions: 2177
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 410
Effective length of database: 14,770,016
Effective search space: 6055706560
Effective search space used: 6055706560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035287.1| serglycin precursor [Mus musculus]. 91 3e-18
>ref|NP_035287.1| serglycin precursor [Mus musculus].
Length = 152
Score = 90.5 bits (223), Expect = 3e-18
Identities = 55/139 (39%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Frame = +2
Query: 629 SSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLPGESNRILPPRTDPFSMTRSKN 808
SSVQG P R+ARYQWVRC P+ NCI+EKGP FDL+ ESN I PP +P M
Sbjct: 21 SSVQGYPARRARYQWVRCKPNGFFANCIEEKGPQFDLI-DESNNIGPPMNNPVLMEGPS- 78
Query: 809 LNDVFPLSEDF---------XXXXXXXXXXXXXLNEIEQEYQPVEENNAFYDNFRSLERN 961
D +D+ L ++E EYQP +E+N Y N++ +R
Sbjct: 79 -KDFISNYDDYGSGSGSGSGSGSGSGSGSGSGFLGDMEWEYQPTDESNIVYFNYKPFDRI 137
Query: 962 LPSDNQDLGLDGQEDDFTV 1018
L NQ D EDDF +
Sbjct: 138 LTEQNQ----DQPEDDFII 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,372,603
Number of extensions: 784096
Number of successful extensions: 1775
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1775
Number of HSP's successfully gapped: 2
Length of query: 517
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 411
Effective length of database: 12,433,743
Effective search space: 5110268373
Effective search space used: 5110268373
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928901.1| PREDICTED: serglycin isoform 2 [Sus scrofa]. 258 8e-69
>ref|XP_001928901.1| PREDICTED: serglycin isoform 2 [Sus scrofa].
Length = 151
Score = 258 bits (658), Expect = 8e-69
Identities = 127/151 (84%), Positives = 127/151 (84%)
Frame = +2
Query: 566 MQVLFRCSGXXXXXXXXXXXDSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP 745
MQVLFRCSG DSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP
Sbjct: 1 MQVLFRCSGLVLALAIILILDSSVQGSPVRKARYQWVRCSPDSDSPNCIDEKGPVFDLLP 60
Query: 746 GESNRILPPRTDPFSMTRSKNLNDVFPLSEDFXXXXXXXXXXXXXLNEIEQEYQPVEENN 925
GESNRILPPRTDPFSMTRSKNLNDVFPLSEDF LNEIEQEYQPVEENN
Sbjct: 61 GESNRILPPRTDPFSMTRSKNLNDVFPLSEDFSGSGSGAGSGSGSLNEIEQEYQPVEENN 120
Query: 926 AFYDNFRSLERNLPSDNQDLGLDGQEDDFTV 1018
AFYDNFRSLERNLPSDNQDLGLDGQEDDFTV
Sbjct: 121 AFYDNFRSLERNLPSDNQDLGLDGQEDDFTV 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,638,334
Number of extensions: 1670649
Number of successful extensions: 1257
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 414
Effective length of database: 8,779,541
Effective search space: 3634729974
Effective search space used: 3634729974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002061
(1552 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1409 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1409 bits (711), Expect = 0.0
Identities = 751/762 (98%), Gaps = 3/762 (0%)
Strand = Plus / Plus
Query: 790 aatgacaagatccaagaacttgaatgatgtcttccctctttctgaggacttttcaggctc 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215049 aatgacaagatccaagaacttgaatgatgtcttccctctttctgaggacttttcaggctc 78215108
Query: 850 tggctctggagcaggatctggaagtggctccctaaatgaaattgaacaggaatatcaacc 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215109 tggctctggagcaggatctggaagtggctccctaaatgaaattgaacaggaatatcaacc 78215168
Query: 910 agtagaagaaaacaatgctttttatgacaactttaggtctttggagagaaatctgccctc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215169 agtagaagaaaacaatgctttttatgacaactttaggtctttggagagaaatctgccctc 78215228
Query: 970 agacaaccaggacttgggtctagatggacaagaagatgattttactgtgtaaaagagagg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215229 agacaaccaggacttgggtctagatggacaagaagatgattttactgtgtaaaagagagg 78215288
Query: 1030 gtttccaaccttgacaccaggaaatatattttgtgtaccatggttaagtgattaatttgg 1089
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 78215289 gtttccaaccttgacaccaggaaatatattttgtgtaccatggttaagtgattaattttg 78215348
Query: 1090 ggacaaaaagctttaaaggaaaatttaaaacatctgaaaaagaagtttaagtttcatcat 1149
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 78215349 ggacaaaaagctttaaaggaaaatttaaaacatctaaaaaagaagtttaagtttcatcat 78215408
Query: 1150 cttttttccccccaattcttaaagcctcctttattctattatcctggaaaatacctgcat 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215409 cttttttccccccaattcttaaagcctcctttattctattatcctggaaaatacctgcat 78215468
Query: 1210 ttcctttgtaatacagtcaacatcattctgaagttaactagacttttcccatacctatac 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215469 ttcctttgtaatacagtcaacatcattctgaagttaactagacttttcccatacctatac 78215528
Query: 1270 aattgctttaaagaataaattatactgtttttaaaaaatgtagtttgagaaggaaattga 1329
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 78215529 aattgctttaaagaataaattatactgttttttaaaaatgtagtttgagaaggaaattga 78215588
Query: 1330 caggcactatttcatatctaagtcttcaggaacatgattctgattgtgaaatctaaatat 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215589 caggcactatttcatatctaagtcttcaggaacatgattctgattgtgaaatctaaatat 78215648
Query: 1390 gcctcctttctcatgaaaaaacacagatgaatgtacagagtgggtattttacatgtttca 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78215649 gcctcctttctcatgaaaaaacacagatgaatgtacagagtgggtattttacatgtttca 78215708
Query: 1450 --ttgtgaaagtaattgctatagtactactactggatgtgttttcagagctagtggatat 1507
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 78215709 ctgtgtgaagttaattgctatagtactactattggatgtgttttcagagctagtggatat 78215768
Query: 1508 ggtttgcttaaaactgtgattgctgtcac-atgagaaagtta 1548
|||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 78215769 ggtttgcttagaactgtgattgctgtcacaatgagaaagtta 78215810
Score = 297 bits (150), Expect = 9e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 640 aggttctcctgtgcggaaagccaggtaccagtgggttcgctgcagtcctgacagtgattc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78212233 aggttctcctgtgcggaaagccaggtaccagtgggttcgctgcagtcctgacagtgattc 78212292
Query: 700 tccaaactgcattgatgaaaagggaccagtgtttgacctacttccaggtgaatccaacag 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78212293 tccaaactgcattgatgaaaagggaccagtgtttgacctacttccaggtgaatccaacag 78212352
Query: 760 aatcctacctccaaggactgaccctttttc 789
||||||||||||||||||||||||||||||
Sbjct: 78212353 aatcctacctccaaggactgaccctttttc 78212382
Score = 268 bits (135), Expect = 8e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 509 catttcccttttgtaaggttggtgtgcaggcggtggagccaaagtgagcctgtcacaatg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78197819 catttcccttttgtaaggttggtgtgcaggcggtggagccaaagtgagcctgtcacaatg 78197878
Query: 569 caggtgctcttccggtgcagtgggcttgtcctggctctagccatcatcctgattttggat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78197879 caggtgctcttccggtgcagtgggcttgtcctggctctagccatcatcctgattttggat 78197938
Query: 629 tcttcagttcaaggt 643
|||||||||||||||
Sbjct: 78197939 tcttcagttcaaggt 78197953
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,359,745
Number of extensions: 401
Number of successful extensions: 401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 3
Length of query: 1552
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1531
Effective length of database: 2,808,413,156
Effective search space: 4299680541836
Effective search space used: 4299680541836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)