Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos t... 385 e-107
Alignment gi|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos t... 334 8e-92
Alignment gi|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos t... 292 3e-79
Alignment gi|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus]. 292 3e-79
>ref|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos taurus].
Length = 212
Score = 385 bits (989), Expect = e-107
Identities = 189/207 (91%), Positives = 190/207 (91%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MNLFRF WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLV+PTAILAFLVNHDFTPLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207
>ref|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos taurus].
Length = 212
Score = 334 bits (857), Expect = 8e-92
Identities = 158/207 (76%), Positives = 179/207 (86%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207
>ref|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos taurus].
Length = 214
Score = 292 bits (748), Expect = 3e-79
Identities = 137/207 (66%), Positives = 166/207 (80%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ CAGISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK+V++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FTPLEILW
Sbjct: 61 TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
>ref|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus].
Length = 214
Score = 292 bits (748), Expect = 3e-79
Identities = 137/207 (66%), Positives = 166/207 (80%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ CAGISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK+V++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FTPLEILW
Sbjct: 61 TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,197,428
Number of extensions: 882099
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3184
Number of HSP's successfully gapped: 4
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en... 385 e-107
Alignment gi|XP_850429.1| PREDICTED: similar to ER lumen protein retainin... 334 8e-92
Alignment gi|XP_861472.1| PREDICTED: similar to ER lumen protein retainin... 328 6e-90
Alignment gi|XP_531737.2| PREDICTED: similar to ER lumen protein retainin... 292 4e-79
Alignment gi|XP_861444.1| PREDICTED: similar to ER lumen protein retainin... 290 1e-78
Alignment gi|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en... 269 4e-72
Alignment gi|XP_861402.1| PREDICTED: similar to ER lumen protein retainin... 166 3e-41
>ref|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
protein retention receptor 1 (predicted) [Canis
familiaris].
Length = 212
Score = 385 bits (990), Expect = e-107
Identities = 190/207 (91%), Positives = 190/207 (91%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MNLFRF WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207
>ref|XP_850429.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 1 [Canis familiaris].
Length = 212
Score = 334 bits (857), Expect = 8e-92
Identities = 158/207 (76%), Positives = 179/207 (86%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207
>ref|XP_861472.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 4 [Canis familiaris].
Length = 217
Score = 328 bits (841), Expect = 6e-90
Identities = 158/212 (74%), Positives = 179/212 (84%), Gaps = 5/212 (2%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMK-----VVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTP 584
T MK ++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+P
Sbjct: 61 TSMKQLLTPLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSP 120
Query: 585 LEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGF 764
LEILWTFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGF
Sbjct: 121 LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGF 180
Query: 765 FDLIAIVAGLVQTVLYCDFFYLYITKVLKGKK 860
FDLIA+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 FDLIAVVAGVVQTILYCDFFYLYITKVLKGKK 212
>ref|XP_531737.2| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL
receptor 3) (KDEL endoplasmic reticulum protein
retention receptor 3) [Canis familiaris].
Length = 214
Score = 292 bits (748), Expect = 4e-79
Identities = 137/207 (66%), Positives = 166/207 (80%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ C+GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCSGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKVV++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FTPLEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
>ref|XP_861444.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 3 [Canis familiaris].
Length = 195
Score = 290 bits (743), Expect = 1e-78
Identities = 141/207 (68%), Positives = 162/207 (78%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLE
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE--- 117
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
LFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 118 --------------LFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 163
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 164 VVAGVVQTILYCDFFYLYITKVLKGKK 190
>ref|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
protein retention receptor 1 (predicted) [Canis
familiaris].
Length = 170
Score = 269 bits (687), Expect = 4e-72
Identities = 140/184 (76%), Positives = 142/184 (77%)
Frame = +3
Query: 309 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFK 488
WKSRSCAGISGKSQVLFAVVFTARYLDL TNYISLYNT MKVVYIACSFTTVWMIY
Sbjct: 19 WKSRSCAGISGKSQVLFAVVFTARYLDLLTNYISLYNTYMKVVYIACSFTTVWMIY---- 74
Query: 489 ATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGE 668
+ILWTFSIYLE VAILPQLF VSKTG+
Sbjct: 75 ---------------------------------KILWTFSIYLELVAILPQLFTVSKTGK 101
Query: 669 AETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL 848
AETITSHYLFALGVYRTLYL NWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL
Sbjct: 102 AETITSHYLFALGVYRTLYLCNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL 161
Query: 849 KGKK 860
KGKK
Sbjct: 162 KGKK 165
>ref|XP_861402.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
receptor 2) (KDEL endoplasmic reticulum protein
retention receptor 2) isoform 2 [Canis familiaris].
Length = 207
Score = 166 bits (421), Expect = 3e-41
Identities = 79/117 (67%), Positives = 92/117 (78%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLE 590
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLE
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,766,801
Number of extensions: 913278
Number of successful extensions: 3274
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 8
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sap... 384 e-107
Alignment gi|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1... 334 8e-92
Alignment gi|NP_006846.1| ER lumen protein retaining receptor 3 isoform a... 288 9e-78
Alignment gi|NP_057839.1| ER lumen protein retaining receptor 3 isoform b... 276 2e-74
Alignment gi|NP_001094073.1| ER lumen protein retaining receptor 2 isofor... 166 3e-41
>ref|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sapiens].
Length = 212
Score = 384 bits (987), Expect = e-107
Identities = 189/207 (91%), Positives = 190/207 (91%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MNLFRF WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
TCMKVVYIACSFTTVW+IYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61 TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207
>ref|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1 [Homo sapiens].
Length = 212
Score = 334 bits (857), Expect = 8e-92
Identities = 158/207 (76%), Positives = 179/207 (86%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKV+Y+ACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207
>ref|NP_006846.1| ER lumen protein retaining receptor 3 isoform a [Homo sapiens].
Length = 214
Score = 288 bits (736), Expect = 9e-78
Identities = 136/207 (65%), Positives = 164/207 (79%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ C GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKVV++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FT LEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
>ref|NP_057839.1| ER lumen protein retaining receptor 3 isoform b [Homo sapiens].
Length = 220
Score = 276 bits (707), Expect = 2e-74
Identities = 130/201 (64%), Positives = 158/201 (78%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ C GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKVV++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FT LEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITK 842
+V+G+VQT+ YCDFFYLY+TK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTK 201
>ref|NP_001094073.1| ER lumen protein retaining receptor 2 isoform 2 [Homo sapiens].
Length = 186
Score = 166 bits (421), Expect = 3e-41
Identities = 79/117 (67%), Positives = 92/117 (78%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLE 590
T MKV+Y+ACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLE
Sbjct: 61 TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,945,064
Number of extensions: 889366
Number of successful extensions: 3211
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3206
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musc... 385 e-107
Alignment gi|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musc... 334 7e-92
Alignment gi|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musc... 290 1e-78
>ref|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musculus].
Length = 212
Score = 385 bits (990), Expect = e-107
Identities = 190/207 (91%), Positives = 190/207 (91%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MNLFRF WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207
>ref|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musculus].
Length = 212
Score = 334 bits (857), Expect = 7e-92
Identities = 158/207 (76%), Positives = 179/207 (86%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1 MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILW
Sbjct: 61 TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207
>ref|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musculus].
Length = 214
Score = 290 bits (742), Expect = 1e-78
Identities = 135/207 (65%), Positives = 168/207 (81%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+SCAGISGKSQ+LFA+VFT RYLDLF+N+IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKVV++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FLVN+ +TP+E+LW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPMEVLW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D I+
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRLLYLANWIRRYQTENFYDQIS 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,226,739
Number of extensions: 736316
Number of successful extensions: 2417
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127317.2| PREDICTED: ER lumen protein retaining recept... 385 e-107
Alignment gi|XP_003126099.2| PREDICTED: ER lumen protein retaining recept... 290 1e-78
Alignment gi|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446... 233 2e-61
>ref|XP_003127317.2| PREDICTED: ER lumen protein retaining receptor 1-like isoform 1
[Sus scrofa].
Length = 212
Score = 385 bits (990), Expect = e-107
Identities = 190/207 (91%), Positives = 190/207 (91%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MNLFRF WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1 MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207
>ref|XP_003126099.2| PREDICTED: ER lumen protein retaining receptor 3-like [Sus scrofa].
Length = 214
Score = 290 bits (741), Expect = 1e-78
Identities = 136/207 (65%), Positives = 164/207 (79%)
Frame = +3
Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
MN+FR W+S+ C GISGKSQ+LFA+VFT RYLDLFT +IS+YN
Sbjct: 1 MNVFRILGDLSHLLAMILLLGKIWRSKCCTGISGKSQILFALVFTTRYLDLFTTFISIYN 60
Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
T MKVV++ C++ TV+MIY KF+ T+D +DTFR+EFL+VP L+FL N+ FTPLEILW
Sbjct: 61 TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120
Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
+V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207
>ref|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446 [Sus scrofa].
Length = 298
Score = 233 bits (594), Expect = 2e-61
Identities = 112/139 (80%), Positives = 127/139 (91%)
Frame = +3
Query: 312 KSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKA 491
K + AGISGKSQ+LFA+VFT RYLDLFT++ISLYNT MK++YIACS+ TV++IY KFKA
Sbjct: 74 KPKVPAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKA 133
Query: 492 TYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEA 671
TYDGNHDTFRVEFLVVP L+FLVNHDF+PLEILWTFSIYLESVAILPQLFM+SKTGEA
Sbjct: 134 TYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEA 193
Query: 672 ETITSHYLFALGVYRTLYL 728
ETIT+HYLF LG+YR LYL
Sbjct: 194 ETITTHYLFFLGLYRALYL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,762,379
Number of extensions: 571022
Number of successful extensions: 2113
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2111
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002063
(1177 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 498 e-138
gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 121 9e-25
Sscrofa_Chr05 88 1e-14
>Sscrofa_Chr06
|| Length = 157765593
Score = 498 bits (251), Expect = e-138
Identities = 254/255 (99%)
Strand = Plus / Plus
Query: 589 agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621362 agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 49621421
Query: 649 tggtgagcaagacgggcgaggcagagaccatcaccagccactacttgtttgcgctgggcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621422 tggtgagcaagacgggcgaggcagagaccatcaccagccactacttgtttgcgctgggcg 49621481
Query: 709 tctaccgcacgctctatctcttcaactggatctggcgctaccacttcgagggcttcttcg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621482 tctaccgcacgctctatctcttcaactggatctggcgctaccacttcgagggcttcttcg 49621541
Query: 769 acctcatcgccatcgtggcgggcctggtccagacggtcctctactgcgacttcttctacc 828
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621542 acctcatcgccattgtggcgggcctggtccagacggtcctctactgcgacttcttctacc 49621601
Query: 829 tctacatcaccaaag 843
|||||||||||||||
Sbjct: 49621602 tctacatcaccaaag 49621616
Score = 424 bits (214), Expect = e-116
Identities = 302/338 (89%), Gaps = 2/338 (0%)
Strand = Plus / Plus
Query: 842 agtcctaaaggggaagaagctgagtttgcccgcgtagccctggtcctcgccatccctctc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49622905 agtcctaaaggggaagaagctgagtttgcccgcgtagccctggtcctcgccatccctctc 49622964
Query: 902 cagggcagccagcggcgagaggctgcggaaggcggcgaaagatgaagagccttcctatcc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49622965 cagggcagccagcggcgagaggctgcggaaggcggcgaaagatgaagagccttcctatcc 49623024
Query: 962 aggagtgacttttttaa-aaccaacctcgcccacctcctcggcccccctcctgccgggtt 1020
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 49623025 aggagtgacttttttaagaaccaacctcgcccacctccttggcccccctcctgccgggtt 49623084
Query: 1021 tcnnnnnnnnnnnnaggacccaagtcttggggagctcaggacctgggctgtttgtagttt 1080
|| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49623085 tcggggggcggtggaggacccaagtcttggggagctcaggacctgggctgtttgtagttt 49623144
Query: 1081 tttgcctttt-nnnnnnnnnnnnnnntctttccactctttagtttttgaatctgaagact 1139
|||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 49623145 tttgccttttagagaagaaaaaaaaatctttccactctttagtttttgattctgatgact 49623204
Query: 1140 tctttctcntctactctctgggccgaatttttataaac 1177
|||||||| |||||||||||| || ||||||||||||
Sbjct: 49623205 tctttctcttctactctctggccccgatttttataaac 49623242
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 430 aggtggtctacattgcctgctctttcaccacagtctggatgatttacagcaagttcaaag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616953 aggtggtctacattgcctgctctttcaccacagtctggatgatttacagcaagttcaaag 49617012
Query: 490 ccacttacgatgggaaccatgacacattccgggtggagttccttgttgttcccacggcca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49617013 ccacttacgatgggaaccatgacacattccgggtggagttccttgttgttcccacggcca 49617072
Query: 550 tcctggcattcttggtcaaccatgactttacccctctagag 590
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 49617073 tcctggcattcttggtcaaccatgactttacccctctagag 49617113
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 330 gggatttcggggaagagccaggtcctgtttgctgtggtgttcactgcccgatacctggac 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616469 gggatttcggggaagagccaggtcctgtttgctgtggtgttcactgcccgatacctggac 49616528
Query: 390 ctcttcaccaactacatctccctctacaacacgtgcatgaaggtg 434
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616529 ctcttcaccaactacatctccctctacaacacgtgcatgaaggtg 49616573
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 237 accatgaatctcttccgattcctgggagacctctcccacctcctagccatcatcttgcta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49615706 accatgaatctcttccgattcctgggagacctctcccacctcctagccatcatcttgcta 49615765
Query: 297 ctgctcaaaatctggaagtcccgctcgtgtgccgg 331
|||||||||||||||||||||||||||||||||||
Sbjct: 49615766 ctgctcaaaatctggaagtcccgctcgtgtgccgg 49615800
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 35 ctcccgccctcctccctcttcctagctccagctctgccaccagctcaggcctcggc 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49615504 ctcccgccctcctccctcttcctagctccagctctgccaccagctcaggcctcggc 49615559
>gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2529
Length = 23488
Score = 121 bits (61), Expect = 9e-25
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 597 tggaccttctccatctacctggagtcggtggccatcctgccacagctgttcatggtgagc 656
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||| | |||
Sbjct: 13614 tggaccttctccatctaccttgagtccgtggctatcctgccacagctcttcatgatcagc 13673
Query: 657 aagacgggcgaggcagagaccatcaccagccactacttgtt 697
|||||||| ||||| ||||||||||||| ||||||| ||||
Sbjct: 13674 aagacgggggaggcggagaccatcaccacccactacctgtt 13714
>Sscrofa_Chr05
|| Length = 111506441
Score = 87.7 bits (44), Expect = 1e-14
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 589 agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 648
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Sbjct: 6788285 agatcctctggactttctctatctacctggaatcagtggccatcctgccccagctcttca 6788226
Query: 649 tggtgagcaagacgggcgaggcagagac 676
|| | |||||||| || ||||| |||||
Sbjct: 6788225 tgatcagcaagacaggagaggctgagac 6788198
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,774,334
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 10
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)