Animal-Genome cDNA 20110601C-002063


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos t...   385   e-107
Alignment   gi|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos t...   334   8e-92
Alignment   gi|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos t...   292   3e-79
Alignment   gi|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus].     292   3e-79

>ref|NP_001069963.1| ER lumen protein retaining receptor 1 [Bos taurus].
          Length = 212

 Score =  385 bits (989), Expect = e-107
 Identities = 189/207 (91%), Positives = 190/207 (91%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MNLFRF                 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLV+PTAILAFLVNHDFTPLEILW
Sbjct: 61  TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207


>ref|NP_001073247.1| ER lumen protein retaining receptor 2 [Bos taurus].
          Length = 212

 Score =  334 bits (857), Expect = 8e-92
 Identities = 158/207 (76%), Positives = 179/207 (86%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLEILW
Sbjct: 61  TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207


>ref|NP_001179162.1| ER lumen protein retaining receptor 3 [Bos taurus].
          Length = 214

 Score =  292 bits (748), Expect = 3e-79
 Identities = 137/207 (66%), Positives = 166/207 (80%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ CAGISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK+V++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FTPLEILW
Sbjct: 61  TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


>ref|XP_002687970.1| PREDICTED: KDEL receptor 3-like [Bos taurus].
          Length = 214

 Score =  292 bits (748), Expect = 3e-79
 Identities = 137/207 (66%), Positives = 166/207 (80%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ CAGISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCAGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK+V++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FTPLEILW
Sbjct: 61  TVMKMVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,197,428
Number of extensions: 882099
Number of successful extensions: 3188
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3184
Number of HSP's successfully gapped: 4
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en...   385   e-107
Alignment   gi|XP_850429.1| PREDICTED: similar to ER lumen protein retainin...   334   8e-92
Alignment   gi|XP_861472.1| PREDICTED: similar to ER lumen protein retainin...   328   6e-90
Alignment   gi|XP_531737.2| PREDICTED: similar to ER lumen protein retainin...   292   4e-79
Alignment   gi|XP_861444.1| PREDICTED: similar to ER lumen protein retainin...   290   1e-78
Alignment   gi|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) en...   269   4e-72
Alignment   gi|XP_861402.1| PREDICTED: similar to ER lumen protein retainin...   166   3e-41

>ref|XP_541521.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
           protein retention receptor 1 (predicted) [Canis
           familiaris].
          Length = 212

 Score =  385 bits (990), Expect = e-107
 Identities = 190/207 (91%), Positives = 190/207 (91%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MNLFRF                 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61  TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207


>ref|XP_850429.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
           receptor 2) (KDEL endoplasmic reticulum protein
           retention receptor 2) isoform 1 [Canis familiaris].
          Length = 212

 Score =  334 bits (857), Expect = 8e-92
 Identities = 158/207 (76%), Positives = 179/207 (86%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLEILW
Sbjct: 61  TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207


>ref|XP_861472.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
           receptor 2) (KDEL endoplasmic reticulum protein
           retention receptor 2) isoform 4 [Canis familiaris].
          Length = 217

 Score =  328 bits (841), Expect = 6e-90
 Identities = 158/212 (74%), Positives = 179/212 (84%), Gaps = 5/212 (2%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMK-----VVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTP 584
           T MK     ++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+P
Sbjct: 61  TSMKQLLTPLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSP 120

Query: 585 LEILWTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGF 764
           LEILWTFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGF
Sbjct: 121 LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGF 180

Query: 765 FDLIAIVAGLVQTVLYCDFFYLYITKVLKGKK 860
           FDLIA+VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 FDLIAVVAGVVQTILYCDFFYLYITKVLKGKK 212


>ref|XP_531737.2| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL
           receptor 3) (KDEL endoplasmic reticulum protein
           retention receptor 3) [Canis familiaris].
          Length = 214

 Score =  292 bits (748), Expect = 4e-79
 Identities = 137/207 (66%), Positives = 166/207 (80%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ C+GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCSGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKVV++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FTPLEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


>ref|XP_861444.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
           receptor 2) (KDEL endoplasmic reticulum protein
           retention receptor 2) isoform 3 [Canis familiaris].
          Length = 195

 Score =  290 bits (743), Expect = 1e-78
 Identities = 141/207 (68%), Positives = 162/207 (78%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLE   
Sbjct: 61  TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE--- 117

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
                         LFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 118 --------------LFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 163

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 164 VVAGVVQTILYCDFFYLYITKVLKGKK 190


>ref|XP_848462.1| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
           protein retention receptor 1 (predicted) [Canis
           familiaris].
          Length = 170

 Score =  269 bits (687), Expect = 4e-72
 Identities = 140/184 (76%), Positives = 142/184 (77%)
 Frame = +3

Query: 309 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFK 488
           WKSRSCAGISGKSQVLFAVVFTARYLDL TNYISLYNT MKVVYIACSFTTVWMIY    
Sbjct: 19  WKSRSCAGISGKSQVLFAVVFTARYLDLLTNYISLYNTYMKVVYIACSFTTVWMIY---- 74

Query: 489 ATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGE 668
                                            +ILWTFSIYLE VAILPQLF VSKTG+
Sbjct: 75  ---------------------------------KILWTFSIYLELVAILPQLFTVSKTGK 101

Query: 669 AETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL 848
           AETITSHYLFALGVYRTLYL NWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL
Sbjct: 102 AETITSHYLFALGVYRTLYLCNWIWRYHFEGFFDLIAIVAGLVQTVLYCDFFYLYITKVL 161

Query: 849 KGKK 860
           KGKK
Sbjct: 162 KGKK 165


>ref|XP_861402.1| PREDICTED: similar to ER lumen protein retaining receptor 2 (KDEL
           receptor 2) (KDEL endoplasmic reticulum protein
           retention receptor 2) isoform 2 [Canis familiaris].
          Length = 207

 Score =  166 bits (421), Expect = 3e-41
 Identities = 79/117 (67%), Positives = 92/117 (78%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLE 590
           T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLE
Sbjct: 61  TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,766,801
Number of extensions: 913278
Number of successful extensions: 3274
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 8
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sap...   384   e-107
Alignment   gi|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1...   334   8e-92
Alignment   gi|NP_006846.1| ER lumen protein retaining receptor 3 isoform a...   288   9e-78
Alignment   gi|NP_057839.1| ER lumen protein retaining receptor 3 isoform b...   276   2e-74
Alignment   gi|NP_001094073.1| ER lumen protein retaining receptor 2 isofor...   166   3e-41

>ref|NP_006792.1| ER lumen protein retaining receptor 1 [Homo sapiens].
          Length = 212

 Score =  384 bits (987), Expect = e-107
 Identities = 189/207 (91%), Positives = 190/207 (91%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MNLFRF                 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           TCMKVVYIACSFTTVW+IYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61  TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207


>ref|NP_006845.1| ER lumen protein retaining receptor 2 isoform 1 [Homo sapiens].
          Length = 212

 Score =  334 bits (857), Expect = 8e-92
 Identities = 158/207 (76%), Positives = 179/207 (86%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKV+Y+ACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLEILW
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207


>ref|NP_006846.1| ER lumen protein retaining receptor 3 isoform a [Homo sapiens].
          Length = 214

 Score =  288 bits (736), Expect = 9e-78
 Identities = 136/207 (65%), Positives = 164/207 (79%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ C GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKVV++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FT LEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


>ref|NP_057839.1| ER lumen protein retaining receptor 3 isoform b [Homo sapiens].
          Length = 220

 Score =  276 bits (707), Expect = 2e-74
 Identities = 130/201 (64%), Positives = 158/201 (78%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ C GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKVV++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FT LEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITK 842
           +V+G+VQT+ YCDFFYLY+TK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTK 201


>ref|NP_001094073.1| ER lumen protein retaining receptor 2 isoform 2 [Homo sapiens].
          Length = 186

 Score =  166 bits (421), Expect = 3e-41
 Identities = 79/117 (67%), Positives = 92/117 (78%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLE 590
           T MKV+Y+ACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLE
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,945,064
Number of extensions: 889366
Number of successful extensions: 3211
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3206
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musc...   385   e-107
Alignment   gi|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musc...   334   7e-92
Alignment   gi|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musc...   290   1e-78

>ref|NP_598711.1| ER lumen protein retaining receptor 1 [Mus musculus].
          Length = 212

 Score =  385 bits (990), Expect = e-107
 Identities = 190/207 (91%), Positives = 190/207 (91%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MNLFRF                 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61  TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207


>ref|NP_080117.1| ER lumen protein retaining receptor 2 [Mus musculus].
          Length = 212

 Score =  334 bits (857), Expect = 7e-92
 Identities = 158/207 (76%), Positives = 179/207 (86%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  WK+RSCAGISGKSQ+LFA+VFT RYLDLFT++ISLYN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MK++YIACS+ TV++IY KFKATYDGNHDTFRVEFLVVP   L+FLVNHDF+PLEILW
Sbjct: 61  TSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWIWR++FEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +VAG+VQT+LYCDFFYLYITKVLKGKK
Sbjct: 181 VVAGVVQTILYCDFFYLYITKVLKGKK 207


>ref|NP_598851.2| ER lumen protein retaining receptor 3 [Mus musculus].
          Length = 214

 Score =  290 bits (742), Expect = 1e-78
 Identities = 135/207 (65%), Positives = 168/207 (81%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+SCAGISGKSQ+LFA+VFT RYLDLF+N+IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLVKIWRSKSCAGISGKSQILFALVFTTRYLDLFSNFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKVV++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FLVN+ +TP+E+LW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYWKFRKTFDIENDTFRLEFLLVPVTGLSFLVNYSYTPMEVLW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D I+
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRLLYLANWIRRYQTENFYDQIS 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,226,739
Number of extensions: 736316
Number of successful extensions: 2417
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127317.2| PREDICTED: ER lumen protein retaining recept...   385   e-107
Alignment   gi|XP_003126099.2| PREDICTED: ER lumen protein retaining recept...   290   1e-78
Alignment   gi|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446...   233   2e-61

>ref|XP_003127317.2| PREDICTED: ER lumen protein retaining receptor 1-like isoform 1
           [Sus scrofa].
          Length = 212

 Score =  385 bits (990), Expect = e-107
 Identities = 190/207 (91%), Positives = 190/207 (91%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MNLFRF                 WKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW
Sbjct: 61  TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           IVAGLVQTVLYCDFFYLYITKVLKGKK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITKVLKGKK 207


>ref|XP_003126099.2| PREDICTED: ER lumen protein retaining receptor 3-like [Sus scrofa].
          Length = 214

 Score =  290 bits (741), Expect = 1e-78
 Identities = 136/207 (65%), Positives = 164/207 (79%)
 Frame = +3

Query: 240 MNLFRFXXXXXXXXXXXXXXXXXWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 419
           MN+FR                  W+S+ C GISGKSQ+LFA+VFT RYLDLFT +IS+YN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCTGISGKSQILFALVFTTRYLDLFTTFISIYN 60

Query: 420 TCMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 599
           T MKVV++ C++ TV+MIY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FTPLEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTPLEILW 120

Query: 600 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 779
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 780 IVAGLVQTVLYCDFFYLYITKVLKGKK 860
           +V+G+VQT+ YCDFFYLY+TKVLKGKK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKVLKGKK 207


>ref|XP_003361228.1| PREDICTED: hypothetical protein LOC100625446 [Sus scrofa].
          Length = 298

 Score =  233 bits (594), Expect = 2e-61
 Identities = 112/139 (80%), Positives = 127/139 (91%)
 Frame = +3

Query: 312 KSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNTCMKVVYIACSFTTVWMIYSKFKA 491
           K +  AGISGKSQ+LFA+VFT RYLDLFT++ISLYNT MK++YIACS+ TV++IY KFKA
Sbjct: 74  KPKVPAGISGKSQLLFALVFTTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKA 133

Query: 492 TYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILWTFSIYLESVAILPQLFMVSKTGEA 671
           TYDGNHDTFRVEFLVVP   L+FLVNHDF+PLEILWTFSIYLESVAILPQLFM+SKTGEA
Sbjct: 134 TYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEA 193

Query: 672 ETITSHYLFALGVYRTLYL 728
           ETIT+HYLF LG+YR LYL
Sbjct: 194 ETITTHYLFFLGLYRALYL 212


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,762,379
Number of extensions: 571022
Number of successful extensions: 2113
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2111
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002063
         (1177 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         498   e-138
gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   121   9e-25
Sscrofa_Chr05                                                          88   1e-14

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  498 bits (251), Expect = e-138
 Identities = 254/255 (99%)
 Strand = Plus / Plus

                                                                            
Query: 589      agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 648
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621362 agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 49621421

                                                                            
Query: 649      tggtgagcaagacgggcgaggcagagaccatcaccagccactacttgtttgcgctgggcg 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621422 tggtgagcaagacgggcgaggcagagaccatcaccagccactacttgtttgcgctgggcg 49621481

                                                                            
Query: 709      tctaccgcacgctctatctcttcaactggatctggcgctaccacttcgagggcttcttcg 768
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621482 tctaccgcacgctctatctcttcaactggatctggcgctaccacttcgagggcttcttcg 49621541

                                                                            
Query: 769      acctcatcgccatcgtggcgggcctggtccagacggtcctctactgcgacttcttctacc 828
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49621542 acctcatcgccattgtggcgggcctggtccagacggtcctctactgcgacttcttctacc 49621601

                               
Query: 829      tctacatcaccaaag 843
                |||||||||||||||
Sbjct: 49621602 tctacatcaccaaag 49621616



 Score =  424 bits (214), Expect = e-116
 Identities = 302/338 (89%), Gaps = 2/338 (0%)
 Strand = Plus / Plus

                                                                            
Query: 842      agtcctaaaggggaagaagctgagtttgcccgcgtagccctggtcctcgccatccctctc 901
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49622905 agtcctaaaggggaagaagctgagtttgcccgcgtagccctggtcctcgccatccctctc 49622964

                                                                            
Query: 902      cagggcagccagcggcgagaggctgcggaaggcggcgaaagatgaagagccttcctatcc 961
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49622965 cagggcagccagcggcgagaggctgcggaaggcggcgaaagatgaagagccttcctatcc 49623024

                                                                            
Query: 962      aggagtgacttttttaa-aaccaacctcgcccacctcctcggcccccctcctgccgggtt 1020
                ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 49623025 aggagtgacttttttaagaaccaacctcgcccacctccttggcccccctcctgccgggtt 49623084

                                                                            
Query: 1021     tcnnnnnnnnnnnnaggacccaagtcttggggagctcaggacctgggctgtttgtagttt 1080
                ||            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49623085 tcggggggcggtggaggacccaagtcttggggagctcaggacctgggctgtttgtagttt 49623144

                                                                            
Query: 1081     tttgcctttt-nnnnnnnnnnnnnnntctttccactctttagtttttgaatctgaagact 1139
                ||||||||||                ||||||||||||||||||||||| ||||| ||||
Sbjct: 49623145 tttgccttttagagaagaaaaaaaaatctttccactctttagtttttgattctgatgact 49623204

                                                      
Query: 1140     tctttctcntctactctctgggccgaatttttataaac 1177
                |||||||| |||||||||||| ||  ||||||||||||
Sbjct: 49623205 tctttctcttctactctctggccccgatttttataaac 49623242



 Score =  319 bits (161), Expect = 2e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 430      aggtggtctacattgcctgctctttcaccacagtctggatgatttacagcaagttcaaag 489
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616953 aggtggtctacattgcctgctctttcaccacagtctggatgatttacagcaagttcaaag 49617012

                                                                            
Query: 490      ccacttacgatgggaaccatgacacattccgggtggagttccttgttgttcccacggcca 549
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49617013 ccacttacgatgggaaccatgacacattccgggtggagttccttgttgttcccacggcca 49617072

                                                         
Query: 550      tcctggcattcttggtcaaccatgactttacccctctagag 590
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 49617073 tcctggcattcttggtcaaccatgactttacccctctagag 49617113



 Score =  208 bits (105), Expect = 5e-51
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                            
Query: 330      gggatttcggggaagagccaggtcctgtttgctgtggtgttcactgcccgatacctggac 389
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616469 gggatttcggggaagagccaggtcctgtttgctgtggtgttcactgcccgatacctggac 49616528

                                                             
Query: 390      ctcttcaccaactacatctccctctacaacacgtgcatgaaggtg 434
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49616529 ctcttcaccaactacatctccctctacaacacgtgcatgaaggtg 49616573



 Score =  188 bits (95), Expect = 5e-45
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                            
Query: 237      accatgaatctcttccgattcctgggagacctctcccacctcctagccatcatcttgcta 296
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49615706 accatgaatctcttccgattcctgggagacctctcccacctcctagccatcatcttgcta 49615765

                                                   
Query: 297      ctgctcaaaatctggaagtcccgctcgtgtgccgg 331
                |||||||||||||||||||||||||||||||||||
Sbjct: 49615766 ctgctcaaaatctggaagtcccgctcgtgtgccgg 49615800



 Score =  111 bits (56), Expect = 9e-22
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                        
Query: 35       ctcccgccctcctccctcttcctagctccagctctgccaccagctcaggcctcggc 90
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49615504 ctcccgccctcctccctcttcctagctccagctctgccaccagctcaggcctcggc 49615559


>gb|GL893800.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2529
          Length = 23488

 Score =  121 bits (61), Expect = 9e-25
 Identities = 91/101 (90%)
 Strand = Plus / Plus

                                                                         
Query: 597   tggaccttctccatctacctggagtcggtggccatcctgccacagctgttcatggtgagc 656
             |||||||||||||||||||| ||||| ||||| |||||||||||||| |||||| | |||
Sbjct: 13614 tggaccttctccatctaccttgagtccgtggctatcctgccacagctcttcatgatcagc 13673

                                                      
Query: 657   aagacgggcgaggcagagaccatcaccagccactacttgtt 697
             |||||||| ||||| ||||||||||||| ||||||| ||||
Sbjct: 13674 aagacgggggaggcggagaccatcaccacccactacctgtt 13714


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                           
Query: 589     agatcctctggaccttctccatctacctggagtcggtggccatcctgccacagctgttca 648
               ||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 6788285 agatcctctggactttctctatctacctggaatcagtggccatcctgccccagctcttca 6788226

                                           
Query: 649     tggtgagcaagacgggcgaggcagagac 676
               || | |||||||| || ||||| |||||
Sbjct: 6788225 tgatcagcaagacaggagaggctgagac 6788198


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,774,334
Number of extensions: 175
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 10
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)