Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092382.1| fumarylacetoacetase [Bos taurus]. 701 0.0
>ref|NP_001092382.1| fumarylacetoacetase [Bos taurus].
Length = 419
Score = 701 bits (1809), Expect = 0.0
Identities = 337/359 (93%), Positives = 345/359 (96%)
Frame = +1
Query: 136 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 315
MSFVPVAEDSDFPIHNLPYGVFST GN RPRIGVAIGDQILDLSVIKHLFTGP+LS HQD
Sbjct: 1 MSFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKHLFTGPILSGHQD 60
Query: 316 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 495
VF++PTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDD ELR+RAFTSQASATM+LPA
Sbjct: 61 VFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPAT 120
Query: 496 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 675
IGDYTDFYSSR HATNVGVMFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRP+GQM
Sbjct: 121 IGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQM 180
Query: 676 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 855
RPDDSKPPVYGACKLLD ELEMAFFVGPGN+LGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 856 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 1035
KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAV NPEQDPKPLPYL HDQPY FDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLS 300
Query: 1036 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGNITGPEPESF 1212
VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLL SG I+GPEPESF
Sbjct: 301 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESF 359
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,838,940
Number of extensions: 1800043
Number of successful extensions: 7756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7692
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,207,134
Effective search space: 4390004406
Effective search space used: 4390004406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fuma... 632 0.0
>ref|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fumarylacetoacetate
hydrolase) (Beta-diketonase) (FAA) [Canis familiaris].
Length = 406
Score = 632 bits (1631), Expect = 0.0
Identities = 313/387 (80%), Positives = 321/387 (82%), Gaps = 44/387 (11%)
Frame = +1
Query: 136 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 315
MSFV VAEDSDFPIHNLPYGVFST GN R RIGVAIGDQILDLSVIKHLFTGP+LSKHQD
Sbjct: 1 MSFVAVAEDSDFPIHNLPYGVFSTPGNPRQRIGVAIGDQILDLSVIKHLFTGPILSKHQD 60
Query: 316 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 495
VF+QP LNSFMGLGQAAWKEARAFLQNLLSAS ARLRDDTELR+RAFT QASA MHLPA
Sbjct: 61 VFNQPALNSFMGLGQAAWKEARAFLQNLLSASHARLRDDTELRRRAFTDQASAVMHLPAI 120
Query: 496 I--------------------------------------------GDYTDFYSSRQHATN 543
I GDYTDFYSSRQHATN
Sbjct: 121 IALSQEAFLVENALPEDSPAREIGGEEASKYFQDLDSDSGGENRAGDYTDFYSSRQHATN 180
Query: 544 VGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQMRPDDSKPPVYGACKLL 723
VG+MFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM PDDSKPPVYGACKLL
Sbjct: 181 VGIMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMSPDDSKPPVYGACKLL 240
Query: 724 DMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 903
DMELEMAFFVGPGN+ GEPIPIS+AHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG
Sbjct: 241 DMELEMAFFVGPGNKFGEPIPISRAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 300
Query: 904 TTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLSVALKGEGMSQAATICR 1083
TTISPWVVPMDALMPF VPNPEQDPKPLPYLRH QPY FDINLSV LKGEGMSQAATIC+
Sbjct: 301 TTISPWVVPMDALMPFVVPNPEQDPKPLPYLRHSQPYTFDINLSVTLKGEGMSQAATICK 360
Query: 1084 SNFKYMYWTMLQQLTHHSVNGCNLQPG 1164
SNFKYMYWTMLQQLTHH+VNG G
Sbjct: 361 SNFKYMYWTMLQQLTHHTVNGFTFGQG 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,052,225
Number of extensions: 1842684
Number of successful extensions: 8111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8080
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 309
Effective length of database: 15,374,224
Effective search space: 4750635216
Effective search space used: 4750635216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000128.1| fumarylacetoacetase [Homo sapiens]. 696 0.0
>ref|NP_000128.1| fumarylacetoacetase [Homo sapiens].
Length = 419
Score = 696 bits (1795), Expect = 0.0
Identities = 333/368 (90%), Positives = 349/368 (94%)
Frame = +1
Query: 136 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 315
MSF+PVAEDSDFPIHNLPYGVFST G+ RPRIGVAIGDQILDLS+IKHLFTGPVLSKHQD
Sbjct: 1 MSFIPVAEDSDFPIHNLPYGVFSTRGDPRPRIGVAIGDQILDLSIIKHLFTGPVLSKHQD 60
Query: 316 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 495
VF+QPTLNSFMGLGQAAWKEAR FLQNLLS SQARLRDDTELRK AF SQASATMHLPA
Sbjct: 61 VFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRKCAFISQASATMHLPAT 120
Query: 496 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 675
IGDYTDFYSSRQHATNVG+MFR KE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGIMFRDKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQM 180
Query: 676 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 855
+PDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 KPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 856 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 1035
KWEYVPLGPFLGKSFGTT+SPWVVPMDALMPFAVPNP+QDP+PLPYL HD+PY FDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTVSPWVVPMDALMPFAVPNPKQDPRPLPYLCHDEPYTFDINLS 300
Query: 1036 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGNITGPEPESFW 1215
V LKGEGMSQAATIC+SNFKYMYWTMLQQLTHHSVNGCNL+PGDLL SG I+GPEPE+F
Sbjct: 301 VNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEPENF- 359
Query: 1216 LHAGTVLE 1239
G++LE
Sbjct: 360 ---GSMLE 364
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,987,079
Number of extensions: 1810909
Number of successful extensions: 7710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7670
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 309
Effective length of database: 14,835,944
Effective search space: 4584306696
Effective search space used: 4584306696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034306.2| fumarylacetoacetase [Mus musculus]. 677 0.0
>ref|NP_034306.2| fumarylacetoacetase [Mus musculus].
Length = 419
Score = 677 bits (1748), Expect = 0.0
Identities = 325/368 (88%), Positives = 344/368 (93%)
Frame = +1
Query: 136 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 315
MSF+PVAEDSDFPI NLPYGVFST N +PRIGVAIGDQILDLSVIKHLFTGP LSKHQ
Sbjct: 1 MSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPALSKHQH 60
Query: 316 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 495
VFD+ TLN+FMGLGQAAWKEARA LQNLLSASQARLRDD ELR+RAFTSQASATMHLPA
Sbjct: 61 VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPAT 120
Query: 496 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 675
IGDYTDFYSSRQHATNVG+MFRGKE AL+PNWLHLPV YHGRASS+VVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 180
Query: 676 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 855
RPD+SKPPVYGAC+LLDMELEMAFFVGPGNR GEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 856 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 1035
+WEYVPLGPFLGKSFGTTISPWVVPMDALMPF VPNP+QDPKPLPYL H QPY FDINLS
Sbjct: 241 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 300
Query: 1036 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGNITGPEPESFW 1215
V+LKGEGMSQAATICRSNFK+MYWTMLQQLTHHSVNGCNL+PGDLL SG I+G +PESF
Sbjct: 301 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF- 359
Query: 1216 LHAGTVLE 1239
G++LE
Sbjct: 360 ---GSMLE 364
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,011,971
Number of extensions: 1496152
Number of successful extensions: 6323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6242
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 310
Effective length of database: 12,493,815
Effective search space: 3873082650
Effective search space used: 3873082650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scr... 740 0.0
Alignment gi|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scr... 503 e-143
>ref|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
Length = 419
Score = 740 bits (1911), Expect = 0.0
Identities = 360/368 (97%), Positives = 363/368 (98%)
Frame = +1
Query: 136 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 315
MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD
Sbjct: 1 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 60
Query: 316 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 495
VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA
Sbjct: 61 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 120
Query: 496 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 675
IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 180
Query: 676 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 855
RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 856 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 1035
KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 300
Query: 1036 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGNITGPEPESFW 1215
VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSG I+GPEPESF
Sbjct: 301 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPESF- 359
Query: 1216 LHAGTVLE 1239
G++LE
Sbjct: 360 ---GSMLE 364
>ref|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
Length = 376
Score = 503 bits (1296), Expect = e-143
Identities = 239/250 (95%), Positives = 244/250 (97%)
Frame = +1
Query: 490 AAIGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 669
++ GDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG
Sbjct: 76 SSAGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 135
Query: 670 QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 849
QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD
Sbjct: 136 QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 195
Query: 850 IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 1029
IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN
Sbjct: 196 IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 255
Query: 1030 LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGNITGPEPES 1209
LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSG I+GPEPES
Sbjct: 256 LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPES 315
Query: 1210 FWLHAGTVLE 1239
F G++LE
Sbjct: 316 F----GSMLE 321
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,086,831
Number of extensions: 1162698
Number of successful extensions: 5004
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4980
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,829,335
Effective search space: 2763581855
Effective search space used: 2763581855
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002073
(1242 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 428 e-117
>Sscrofa_Chr07
|| Length = 134764511
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 1 ctctggtggggcgggcctgatggggcggggtcctcagggggcgtgacccggcctgaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556147 ctctggtggggcgggcctgatggggcggggtcctcagggggcgtgacccggcctgaccac 54556206
Query: 61 ctcggcgagtcccggcccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556207 ctcggcgagtcccggcccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 54556266
Query: 121 tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556267 tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 54556326
Query: 181 aacctgccctacggcgtcttctccactacaggcaac 216
||||||||||||||||||||||||||||||||||||
Sbjct: 54556327 aacctgccctacggcgtcttctccactacaggcaac 54556362
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 841 gctcgagacattcagaagtgggagtatgtccctcttgggccgttcctcgggaagagtttt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54582504 gctcgagacattcagaagtgggagtatgtccctcttgggccgttcctcgggaagagtttt 54582563
Query: 901 ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54582564 ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 54582623
Query: 961 aacccagagcagg 973
|||||||||||||
Sbjct: 54582624 aacccagagcagg 54582636
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 326 agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54563943 agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 54564002
Query: 386 tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54564003 tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 54564062
Query: 446 agcg 449
||||
Sbjct: 54564063 agcg 54564066
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 217 tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561290 tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 54561349
Query: 277 cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 327
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561350 cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 54561400
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 741 ggctttctttgtaggccctgggaacagacttggagagcccatccccatctccaaggccca 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54581657 ggctttctttgtaggccctgggaacagacttggagagcccatccccatctccaaggccca 54581716
Query: 801 cgagcacatttttggaatggtccttatgaacgactggagtg 841
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54581717 cgagcacatttttggaatggtccttatgaacgactggagtg 54581757
Score = 198 bits (100), Expect = 5e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 590 ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579387 ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 54579446
Query: 650 caatccgcaggcccatgggacagatgcgccccgatgactctaag 693
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54579447 caatccgcaggcccatgggacagatgcgccccgatgactgtaag 54579490
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 498 aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54571489 aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 54571548
Query: 558 caggggcaaggagactgcactgatgcccaattgg 591
||||||||||||||||||||||||||||||||||
Sbjct: 54571549 caggggcaaggagactgcactgatgcccaattgg 54571582
Score = 180 bits (91), Expect = 1e-42
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1094 agtacatgtactggacgatgttgcaacagctcactcaccactctgtcaatggctgcaacc 1153
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 54589873 agtacatgtactggacgatgttgcagcagctcactcaccactctgtcaatggctgcaacc 54589932
Query: 1154 tgcagcctggggacctcttgggttctggaaacatcaccgggcc 1196
|||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 54589933 tgcagcctggggacctcttgggttctggaaccatcagcgggcc 54589975
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 970 caggaccccaagcctctgccatatctccgccacgaccagccctacatgttcgacatcaac 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54585076 caggaccccaagcctctgccatatctccgccacgaccagccctacatgttcgacatcaac 54585135
Query: 1030 ctctctgttgccctgaaagg 1049
|||||||| |||||||||||
Sbjct: 54585136 ctctctgtcgccctgaaagg 54585155
Score = 111 bits (56), Expect = 9e-22
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 449 gcgcattcacctcccaggcctccgccacgatgcatcttcctgccgccataggtgactaca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54564600 gcgcattcacctcccaggcctccgccacgatgcatcttcctgccgccataggtgagtaca 54564659
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 689 ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579593 ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 54579646
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 1047 aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 1095
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54587466 aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 54587514
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,463,546
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 12
Length of query: 1242
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1221
Effective length of database: 2,808,413,156
Effective search space: 3429072463476
Effective search space used: 3429072463476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)