Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092382.1| fumarylacetoacetase [Bos taurus]. 716 0.0
>ref|NP_001092382.1| fumarylacetoacetase [Bos taurus].
Length = 419
Score = 716 bits (1849), Expect = 0.0
Identities = 347/375 (92%), Positives = 359/375 (95%)
Frame = +2
Query: 77 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
MSFVPVAEDSDFPIHNLPYGVFST GN RPRIGVAIGDQILDLSVIKHLFTGP+LS HQD
Sbjct: 1 MSFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKHLFTGPILSGHQD 60
Query: 257 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
VF++PTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDD ELR+RAFTSQASATM+LPA+
Sbjct: 61 VFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPAT 120
Query: 437 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
IGDYTDFYSSR HATNVGVMFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRP+GQM
Sbjct: 121 IGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQM 180
Query: 617 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
RPDDSKPPVYGACKLLD ELEMAFFVGPGN+LGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 797 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAV NPEQDPKPLPYL HDQPY FDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLS 300
Query: 977 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLL SG ISGPEPESFG
Sbjct: 301 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESFG 360
Query: 1157 SMLELS*RGTKAIEL 1201
MLELS +GT+A+EL
Sbjct: 361 CMLELSWKGTRAVEL 375
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,591,010
Number of extensions: 1675229
Number of successful extensions: 5827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5808
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 297
Effective length of database: 14,240,222
Effective search space: 4229345934
Effective search space used: 4229345934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fuma... 632 0.0
>ref|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fumarylacetoacetate
hydrolase) (Beta-diketonase) (FAA) [Canis familiaris].
Length = 406
Score = 632 bits (1629), Expect(2) = 0.0
Identities = 312/381 (81%), Positives = 320/381 (83%), Gaps = 44/381 (11%)
Frame = +2
Query: 77 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
MSFV VAEDSDFPIHNLPYGVFST GN R RIGVAIGDQILDLSVIKHLFTGP+LSKHQD
Sbjct: 1 MSFVAVAEDSDFPIHNLPYGVFSTPGNPRQRIGVAIGDQILDLSVIKHLFTGPILSKHQD 60
Query: 257 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
VF+QP LNSFMGLGQAAWKEARAFLQNLLSAS ARLRDDTELR+RAFT QASA MHLPA
Sbjct: 61 VFNQPALNSFMGLGQAAWKEARAFLQNLLSASHARLRDDTELRRRAFTDQASAVMHLPAI 120
Query: 437 I--------------------------------------------GDYTDFYSSRQHATN 484
I GDYTDFYSSRQHATN
Sbjct: 121 IALSQEAFLVENALPEDSPAREIGGEEASKYFQDLDSDSGGENRAGDYTDFYSSRQHATN 180
Query: 485 VGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQMRPDDSKPPVYGACKLL 664
VG+MFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM PDDSKPPVYGACKLL
Sbjct: 181 VGIMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMSPDDSKPPVYGACKLL 240
Query: 665 DMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 844
DMELEMAFFVGPGN+ GEPIPIS+AHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG
Sbjct: 241 DMELEMAFFVGPGNKFGEPIPISRAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 300
Query: 845 TTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLSVALKGEGMSQAATICR 1024
TTISPWVVPMDALMPF VPNPEQDPKPLPYLRH QPY FDINLSV LKGEGMSQAATIC+
Sbjct: 301 TTISPWVVPMDALMPFVVPNPEQDPKPLPYLRHSQPYTFDINLSVTLKGEGMSQAATICK 360
Query: 1025 SNFKYMYWTMLQQLTHHSVNG 1087
SNFKYMYWTMLQQLTHH+VNG
Sbjct: 361 SNFKYMYWTMLQQLTHHTVNG 381
Score = 34.7 bits (78), Expect(2) = 0.0
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 1086 GATCSLGTSWVLESSAGRSQKALAPC 1163
G T GT W+LE +GRSQ+A APC
Sbjct: 381 GFTFGQGTCWLLEPFSGRSQRASAPC 406
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,738,940
Number of extensions: 1716443
Number of successful extensions: 5956
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5946
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 296
Effective length of database: 15,374,224
Effective search space: 4550770304
Effective search space used: 4550770304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000128.1| fumarylacetoacetase [Homo sapiens]. 711 0.0
>ref|NP_000128.1| fumarylacetoacetase [Homo sapiens].
Length = 419
Score = 711 bits (1834), Expect = 0.0
Identities = 341/375 (90%), Positives = 358/375 (95%)
Frame = +2
Query: 77 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
MSF+PVAEDSDFPIHNLPYGVFST G+ RPRIGVAIGDQILDLS+IKHLFTGPVLSKHQD
Sbjct: 1 MSFIPVAEDSDFPIHNLPYGVFSTRGDPRPRIGVAIGDQILDLSIIKHLFTGPVLSKHQD 60
Query: 257 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
VF+QPTLNSFMGLGQAAWKEAR FLQNLLS SQARLRDDTELRK AF SQASATMHLPA+
Sbjct: 61 VFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRKCAFISQASATMHLPAT 120
Query: 437 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
IGDYTDFYSSRQHATNVG+MFR KE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGIMFRDKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQM 180
Query: 617 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
+PDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 KPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 797 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
KWEYVPLGPFLGKSFGTT+SPWVVPMDALMPFAVPNP+QDP+PLPYL HD+PY FDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTVSPWVVPMDALMPFAVPNPKQDPRPLPYLCHDEPYTFDINLS 300
Query: 977 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
V LKGEGMSQAATIC+SNFKYMYWTMLQQLTHHSVNG +L+PGDLL SG ISGPEPE+FG
Sbjct: 301 VNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEPENFG 360
Query: 1157 SMLELS*RGTKAIEL 1201
SMLELS +GTK I+L
Sbjct: 361 SMLELSWKGTKPIDL 375
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,733,239
Number of extensions: 1689202
Number of successful extensions: 5786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5767
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 296
Effective length of database: 14,835,944
Effective search space: 4391439424
Effective search space used: 4391439424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034306.2| fumarylacetoacetase [Mus musculus]. 693 0.0
>ref|NP_034306.2| fumarylacetoacetase [Mus musculus].
Length = 419
Score = 693 bits (1789), Expect = 0.0
Identities = 333/375 (88%), Positives = 354/375 (94%)
Frame = +2
Query: 77 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
MSF+PVAEDSDFPI NLPYGVFST N +PRIGVAIGDQILDLSVIKHLFTGP LSKHQ
Sbjct: 1 MSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPALSKHQH 60
Query: 257 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
VFD+ TLN+FMGLGQAAWKEARA LQNLLSASQARLRDD ELR+RAFTSQASATMHLPA+
Sbjct: 61 VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPAT 120
Query: 437 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
IGDYTDFYSSRQHATNVG+MFRGKE AL+PNWLHLPV YHGRASS+VVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 180
Query: 617 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
RPD+SKPPVYGAC+LLDMELEMAFFVGPGNR GEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 797 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
+WEYVPLGPFLGKSFGTTISPWVVPMDALMPF VPNP+QDPKPLPYL H QPY FDINLS
Sbjct: 241 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 300
Query: 977 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
V+LKGEGMSQAATICRSNFK+MYWTMLQQLTHHSVNG +L+PGDLL SG ISG +PESFG
Sbjct: 301 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 360
Query: 1157 SMLELS*RGTKAIEL 1201
SMLELS +GTKAI++
Sbjct: 361 SMLELSWKGTKAIDV 375
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,243,111
Number of extensions: 1401820
Number of successful extensions: 4909
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4863
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 297
Effective length of database: 12,493,815
Effective search space: 3710663055
Effective search space used: 3710663055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scr... 758 0.0
Alignment gi|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scr... 523 e-149
>ref|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
Length = 419
Score = 758 bits (1957), Expect = 0.0
Identities = 370/375 (98%), Positives = 372/375 (99%)
Frame = +2
Query: 77 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD
Sbjct: 1 MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 60
Query: 257 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPA+
Sbjct: 61 VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 120
Query: 437 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM
Sbjct: 121 IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 180
Query: 617 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181 RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240
Query: 797 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS
Sbjct: 241 KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 300
Query: 977 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLLGSG ISGPEPESFG
Sbjct: 301 VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPESFG 360
Query: 1157 SMLELS*RGTKAIEL 1201
SMLELS RGTKAIEL
Sbjct: 361 SMLELSWRGTKAIEL 375
>ref|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
Length = 376
Score = 523 bits (1348), Expect = e-149
Identities = 251/257 (97%), Positives = 253/257 (98%)
Frame = +2
Query: 431 ASIGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 610
+S GDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG
Sbjct: 76 SSAGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 135
Query: 611 QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 790
QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD
Sbjct: 136 QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 195
Query: 791 IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 970
IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN
Sbjct: 196 IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 255
Query: 971 LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPES 1150
LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLLGSG ISGPEPES
Sbjct: 256 LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPES 315
Query: 1151 FGSMLELS*RGTKAIEL 1201
FGSMLELS RGTKAIEL
Sbjct: 316 FGSMLELSWRGTKAIEL 332
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,611,275
Number of extensions: 1079355
Number of successful extensions: 3752
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3748
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,829,335
Effective search space: 2648800500
Effective search space used: 2648800500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002075
(1203 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 293 1e-76
>Sscrofa_Chr07
|| Length = 134764511
Score = 293 bits (148), Expect = 1e-76
Identities = 155/156 (99%), Gaps = 1/156 (0%)
Strand = Plus / Plus
Query: 3 ctcggcgagtcccg-cccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556207 ctcggcgagtcccggcccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 54556266
Query: 62 tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556267 tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 54556326
Query: 122 aacctgccctacggcgtcttctccactacaggcaac 157
||||||||||||||||||||||||||||||||||||
Sbjct: 54556327 aacctgccctacggcgtcttctccactacaggcaac 54556362
Score = 256 bits (129), Expect = 2e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 782 gctcgagacattcagaagtgggagtatgtccctcttgggccattcctcgggaagagtttt 841
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 54582504 gctcgagacattcagaagtgggagtatgtccctcttgggccgttcctcgggaagagtttt 54582563
Query: 842 ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54582564 ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 54582623
Query: 902 aacccagagcagg 914
|||||||||||||
Sbjct: 54582624 aacccagagcagg 54582636
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 267 agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54563943 agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 54564002
Query: 327 tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54564003 tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 54564062
Query: 387 agcg 390
||||
Sbjct: 54564063 agcg 54564066
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 158 tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561290 tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 54561349
Query: 218 cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 268
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561350 cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 54561400
Score = 198 bits (100), Expect = 5e-48
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 531 ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579387 ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 54579446
Query: 591 caatccgcaggcccatgggacagatgcgccccgatgactctaag 634
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54579447 caatccgcaggcccatgggacagatgcgccccgatgactgtaag 54579490
Score = 192 bits (97), Expect = 3e-46
Identities = 100/101 (99%)
Strand = Plus / Plus
Query: 682 ggctttctttgtaggccctggaaacagacttggagagcccatccccatctccaaggccca 741
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 54581657 ggctttctttgtaggccctgggaacagacttggagagcccatccccatctccaaggccca 54581716
Query: 742 cgagcacatttttggaatggtccttatgaacgactggagtg 782
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54581717 cgagcacatttttggaatggtccttatgaacgactggagtg 54581757
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 439 aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54571489 aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 54571548
Query: 499 caggggcaaggagactgcactgatgcccaattgg 532
||||||||||||||||||||||||||||||||||
Sbjct: 54571549 caggggcaaggagactgcactgatgcccaattgg 54571582
Score = 176 bits (89), Expect = 2e-41
Identities = 101/105 (96%)
Strand = Plus / Plus
Query: 1035 agtacatgtactggacgatgttgcagcagctcactcaccactctgtcaatgggcgccacc 1094
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 54589873 agtacatgtactggacgatgttgcagcagctcactcaccactctgtcaatggctgcaacc 54589932
Query: 1095 tgcagcctggggacctcttgggttctggaatcatcagcgggccgg 1139
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 54589933 tgcagcctggggacctcttgggttctggaaccatcagcgggccgg 54589977
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 911 caggaccccaagcctctgccatatctccgccatgaccagccctacatgttcgacatcaac 970
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 54585076 caggaccccaagcctctgccatatctccgccacgaccagccctacatgttcgacatcaac 54585135
Query: 971 ctctctgtcgccctgaaagg 990
||||||||||||||||||||
Sbjct: 54585136 ctctctgtcgccctgaaagg 54585155
Score = 123 bits (62), Expect = 2e-25
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1138 ggagccagaaagctttggctccatgctggagctgtcgtgaaggggaacaaaggccataga 1197
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 54590629 ggagccagaaagctttggctccatgctggagctgtcgtggaggggaacaaaggccataga 54590688
Query: 1198 gctggg 1203
||||||
Sbjct: 54590689 gctggg 54590694
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 630 ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579593 ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 54579646
Score = 103 bits (52), Expect = 2e-19
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 390 gcgcattcacctcccaggcctccgccacgatgcatcttcctgcctccataggtgactaca 449
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 54564600 gcgcattcacctcccaggcctccgccacgatgcatcttcctgccgccataggtgagtaca 54564659
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 988 aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 1036
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54587466 aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 54587514
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,719,109
Number of extensions: 231
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 13
Length of query: 1203
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1182
Effective length of database: 2,808,413,156
Effective search space: 3319544350392
Effective search space used: 3319544350392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)