Animal-Genome cDNA 20110601C-002075


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092382.1| fumarylacetoacetase [Bos taurus].                 716   0.0  

>ref|NP_001092382.1| fumarylacetoacetase [Bos taurus].
          Length = 419

 Score =  716 bits (1849), Expect = 0.0
 Identities = 347/375 (92%), Positives = 359/375 (95%)
 Frame = +2

Query: 77   MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
            MSFVPVAEDSDFPIHNLPYGVFST GN RPRIGVAIGDQILDLSVIKHLFTGP+LS HQD
Sbjct: 1    MSFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKHLFTGPILSGHQD 60

Query: 257  VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
            VF++PTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDD ELR+RAFTSQASATM+LPA+
Sbjct: 61   VFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPAT 120

Query: 437  IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
            IGDYTDFYSSR HATNVGVMFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRP+GQM
Sbjct: 121  IGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQM 180

Query: 617  RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
            RPDDSKPPVYGACKLLD ELEMAFFVGPGN+LGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181  RPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240

Query: 797  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
            KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAV NPEQDPKPLPYL HDQPY FDINLS
Sbjct: 241  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLS 300

Query: 977  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
            VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLL SG ISGPEPESFG
Sbjct: 301  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESFG 360

Query: 1157 SMLELS*RGTKAIEL 1201
             MLELS +GT+A+EL
Sbjct: 361  CMLELSWKGTRAVEL 375


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,591,010
Number of extensions: 1675229
Number of successful extensions: 5827
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5808
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 297
Effective length of database: 14,240,222
Effective search space: 4229345934
Effective search space used: 4229345934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fuma...   632   0.0  

>ref|XP_852646.1| PREDICTED: similar to Fumarylacetoacetase (Fumarylacetoacetate
            hydrolase) (Beta-diketonase) (FAA) [Canis familiaris].
          Length = 406

 Score =  632 bits (1629), Expect(2) = 0.0
 Identities = 312/381 (81%), Positives = 320/381 (83%), Gaps = 44/381 (11%)
 Frame = +2

Query: 77   MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
            MSFV VAEDSDFPIHNLPYGVFST GN R RIGVAIGDQILDLSVIKHLFTGP+LSKHQD
Sbjct: 1    MSFVAVAEDSDFPIHNLPYGVFSTPGNPRQRIGVAIGDQILDLSVIKHLFTGPILSKHQD 60

Query: 257  VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
            VF+QP LNSFMGLGQAAWKEARAFLQNLLSAS ARLRDDTELR+RAFT QASA MHLPA 
Sbjct: 61   VFNQPALNSFMGLGQAAWKEARAFLQNLLSASHARLRDDTELRRRAFTDQASAVMHLPAI 120

Query: 437  I--------------------------------------------GDYTDFYSSRQHATN 484
            I                                            GDYTDFYSSRQHATN
Sbjct: 121  IALSQEAFLVENALPEDSPAREIGGEEASKYFQDLDSDSGGENRAGDYTDFYSSRQHATN 180

Query: 485  VGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQMRPDDSKPPVYGACKLL 664
            VG+MFRGKE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM PDDSKPPVYGACKLL
Sbjct: 181  VGIMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQMSPDDSKPPVYGACKLL 240

Query: 665  DMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 844
            DMELEMAFFVGPGN+ GEPIPIS+AHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG
Sbjct: 241  DMELEMAFFVGPGNKFGEPIPISRAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFG 300

Query: 845  TTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLSVALKGEGMSQAATICR 1024
            TTISPWVVPMDALMPF VPNPEQDPKPLPYLRH QPY FDINLSV LKGEGMSQAATIC+
Sbjct: 301  TTISPWVVPMDALMPFVVPNPEQDPKPLPYLRHSQPYTFDINLSVTLKGEGMSQAATICK 360

Query: 1025 SNFKYMYWTMLQQLTHHSVNG 1087
            SNFKYMYWTMLQQLTHH+VNG
Sbjct: 361  SNFKYMYWTMLQQLTHHTVNG 381



 Score = 34.7 bits (78), Expect(2) = 0.0
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 1086 GATCSLGTSWVLESSAGRSQKALAPC 1163
            G T   GT W+LE  +GRSQ+A APC
Sbjct: 381  GFTFGQGTCWLLEPFSGRSQRASAPC 406


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,738,940
Number of extensions: 1716443
Number of successful extensions: 5956
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5946
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 296
Effective length of database: 15,374,224
Effective search space: 4550770304
Effective search space used: 4550770304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000128.1| fumarylacetoacetase [Homo sapiens].                  711   0.0  

>ref|NP_000128.1| fumarylacetoacetase [Homo sapiens].
          Length = 419

 Score =  711 bits (1834), Expect = 0.0
 Identities = 341/375 (90%), Positives = 358/375 (95%)
 Frame = +2

Query: 77   MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
            MSF+PVAEDSDFPIHNLPYGVFST G+ RPRIGVAIGDQILDLS+IKHLFTGPVLSKHQD
Sbjct: 1    MSFIPVAEDSDFPIHNLPYGVFSTRGDPRPRIGVAIGDQILDLSIIKHLFTGPVLSKHQD 60

Query: 257  VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
            VF+QPTLNSFMGLGQAAWKEAR FLQNLLS SQARLRDDTELRK AF SQASATMHLPA+
Sbjct: 61   VFNQPTLNSFMGLGQAAWKEARVFLQNLLSVSQARLRDDTELRKCAFISQASATMHLPAT 120

Query: 437  IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
            IGDYTDFYSSRQHATNVG+MFR KE ALMPNWLHLPV YHGRASSVVVSGTPIRRPMGQM
Sbjct: 121  IGDYTDFYSSRQHATNVGIMFRDKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPMGQM 180

Query: 617  RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
            +PDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181  KPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240

Query: 797  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
            KWEYVPLGPFLGKSFGTT+SPWVVPMDALMPFAVPNP+QDP+PLPYL HD+PY FDINLS
Sbjct: 241  KWEYVPLGPFLGKSFGTTVSPWVVPMDALMPFAVPNPKQDPRPLPYLCHDEPYTFDINLS 300

Query: 977  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
            V LKGEGMSQAATIC+SNFKYMYWTMLQQLTHHSVNG +L+PGDLL SG ISGPEPE+FG
Sbjct: 301  VNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGPEPENFG 360

Query: 1157 SMLELS*RGTKAIEL 1201
            SMLELS +GTK I+L
Sbjct: 361  SMLELSWKGTKPIDL 375


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,733,239
Number of extensions: 1689202
Number of successful extensions: 5786
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5767
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 296
Effective length of database: 14,835,944
Effective search space: 4391439424
Effective search space used: 4391439424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034306.2| fumarylacetoacetase [Mus musculus].                  693   0.0  

>ref|NP_034306.2| fumarylacetoacetase [Mus musculus].
          Length = 419

 Score =  693 bits (1789), Expect = 0.0
 Identities = 333/375 (88%), Positives = 354/375 (94%)
 Frame = +2

Query: 77   MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
            MSF+PVAEDSDFPI NLPYGVFST  N +PRIGVAIGDQILDLSVIKHLFTGP LSKHQ 
Sbjct: 1    MSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPALSKHQH 60

Query: 257  VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
            VFD+ TLN+FMGLGQAAWKEARA LQNLLSASQARLRDD ELR+RAFTSQASATMHLPA+
Sbjct: 61   VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPAT 120

Query: 437  IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
            IGDYTDFYSSRQHATNVG+MFRGKE AL+PNWLHLPV YHGRASS+VVSGTPIRRPMGQM
Sbjct: 121  IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 180

Query: 617  RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
            RPD+SKPPVYGAC+LLDMELEMAFFVGPGNR GEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181  RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 240

Query: 797  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
            +WEYVPLGPFLGKSFGTTISPWVVPMDALMPF VPNP+QDPKPLPYL H QPY FDINLS
Sbjct: 241  QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 300

Query: 977  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
            V+LKGEGMSQAATICRSNFK+MYWTMLQQLTHHSVNG +L+PGDLL SG ISG +PESFG
Sbjct: 301  VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 360

Query: 1157 SMLELS*RGTKAIEL 1201
            SMLELS +GTKAI++
Sbjct: 361  SMLELSWKGTKAIDV 375


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,243,111
Number of extensions: 1401820
Number of successful extensions: 4909
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4863
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 297
Effective length of database: 12,493,815
Effective search space: 3710663055
Effective search space used: 3710663055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scr...   758   0.0  
Alignment   gi|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scr...   523   e-149

>ref|XP_003356696.1| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
          Length = 419

 Score =  758 bits (1957), Expect = 0.0
 Identities = 370/375 (98%), Positives = 372/375 (99%)
 Frame = +2

Query: 77   MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 256
            MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD
Sbjct: 1    MSFVPVAEDSDFPIHNLPYGVFSTTGNSRPRIGVAIGDQILDLSVIKHLFTGPVLSKHQD 60

Query: 257  VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAS 436
            VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPA+
Sbjct: 61   VFDQPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDTELRKRAFTSQASATMHLPAA 120

Query: 437  IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 616
            IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM
Sbjct: 121  IGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMGQM 180

Query: 617  RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 796
            RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ
Sbjct: 181  RPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARDIQ 240

Query: 797  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 976
            KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS
Sbjct: 241  KWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDINLS 300

Query: 977  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPESFG 1156
            VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLLGSG ISGPEPESFG
Sbjct: 301  VALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPESFG 360

Query: 1157 SMLELS*RGTKAIEL 1201
            SMLELS RGTKAIEL
Sbjct: 361  SMLELSWRGTKAIEL 375


>ref|XP_001928445.2| PREDICTED: fumarylacetoacetase-like [Sus scrofa].
          Length = 376

 Score =  523 bits (1348), Expect = e-149
 Identities = 251/257 (97%), Positives = 253/257 (98%)
 Frame = +2

Query: 431  ASIGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 610
            +S GDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG
Sbjct: 76   SSAGDYTDFYSSRQHATNVGVMFRGKETALMPNWLHLPVAYHGRASSVVVSGTPIRRPMG 135

Query: 611  QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 790
            QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD
Sbjct: 136  QMRPDDSKPPVYGACKLLDMELEMAFFVGPGNRLGEPIPISKAHEHIFGMVLMNDWSARD 195

Query: 791  IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 970
            IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN
Sbjct: 196  IQKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVPNPEQDPKPLPYLRHDQPYMFDIN 255

Query: 971  LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGRHLQPGDLLGSGIISGPEPES 1150
            LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNG +LQPGDLLGSG ISGPEPES
Sbjct: 256  LSVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLGSGTISGPEPES 315

Query: 1151 FGSMLELS*RGTKAIEL 1201
            FGSMLELS RGTKAIEL
Sbjct: 316  FGSMLELSWRGTKAIEL 332


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,611,275
Number of extensions: 1079355
Number of successful extensions: 3752
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3748
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,829,335
Effective search space: 2648800500
Effective search space used: 2648800500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002075
         (1203 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         293   1e-76

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  293 bits (148), Expect = 1e-76
 Identities = 155/156 (99%), Gaps = 1/156 (0%)
 Strand = Plus / Plus

                                                                            
Query: 3        ctcggcgagtcccg-cccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 61
                |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556207 ctcggcgagtcccggcccgctgatcgcccgcagcccgcaacccgcagccagcttctctgc 54556266

                                                                            
Query: 62       tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54556267 tcggtgctcgccagcatgtccttcgtccctgtggccgaggattctgacttccctatccac 54556326

                                                    
Query: 122      aacctgccctacggcgtcttctccactacaggcaac 157
                ||||||||||||||||||||||||||||||||||||
Sbjct: 54556327 aacctgccctacggcgtcttctccactacaggcaac 54556362



 Score =  256 bits (129), Expect = 2e-65
 Identities = 132/133 (99%)
 Strand = Plus / Plus

                                                                            
Query: 782      gctcgagacattcagaagtgggagtatgtccctcttgggccattcctcgggaagagtttt 841
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 54582504 gctcgagacattcagaagtgggagtatgtccctcttgggccgttcctcgggaagagtttt 54582563

                                                                            
Query: 842      ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 901
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54582564 ggaaccaccatatccccatgggtggtgcccatggatgccctcatgccctttgctgtgccc 54582623

                             
Query: 902      aacccagagcagg 914
                |||||||||||||
Sbjct: 54582624 aacccagagcagg 54582636



 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                            
Query: 267      agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 326
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54563943 agccaactcttaacagcttcatgggcctgggccaggctgcctggaaggaagcaagagcat 54564002

                                                                            
Query: 327      tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 386
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54564003 tcttgcaaaacctactatctgccagccaagccaggctcagagatgacacagaacttcgga 54564062

                    
Query: 387      agcg 390
                ||||
Sbjct: 54564063 agcg 54564066



 Score =  220 bits (111), Expect = 1e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 158      tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 217
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561290 tcaagaccgaggatcggcgtggcgattggtgaccagatcctggacctcagtgtcataaag 54561349

                                                                   
Query: 218      cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 268
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54561350 cacctcttcactgggcctgtcctctccaaacaccaagatgtctttgatcag 54561400



 Score =  198 bits (100), Expect = 5e-48
 Identities = 103/104 (99%)
 Strand = Plus / Plus

                                                                            
Query: 531      ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 590
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579387 ggctgcatctaccggtggcctaccatggccgtgcctcctctgtcgtggtgtctggcaccc 54579446

                                                            
Query: 591      caatccgcaggcccatgggacagatgcgccccgatgactctaag 634
                ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54579447 caatccgcaggcccatgggacagatgcgccccgatgactgtaag 54579490



 Score =  192 bits (97), Expect = 3e-46
 Identities = 100/101 (99%)
 Strand = Plus / Plus

                                                                            
Query: 682      ggctttctttgtaggccctggaaacagacttggagagcccatccccatctccaaggccca 741
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 54581657 ggctttctttgtaggccctgggaacagacttggagagcccatccccatctccaaggccca 54581716

                                                         
Query: 742      cgagcacatttttggaatggtccttatgaacgactggagtg 782
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54581717 cgagcacatttttggaatggtccttatgaacgactggagtg 54581757



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                            
Query: 439      aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 498
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54571489 aggtgactacacagacttctattcctcccggcagcacgccacaaacgtcggagtcatgtt 54571548

                                                  
Query: 499      caggggcaaggagactgcactgatgcccaattgg 532
                ||||||||||||||||||||||||||||||||||
Sbjct: 54571549 caggggcaaggagactgcactgatgcccaattgg 54571582



 Score =  176 bits (89), Expect = 2e-41
 Identities = 101/105 (96%)
 Strand = Plus / Plus

                                                                            
Query: 1035     agtacatgtactggacgatgttgcagcagctcactcaccactctgtcaatgggcgccacc 1094
                ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||
Sbjct: 54589873 agtacatgtactggacgatgttgcagcagctcactcaccactctgtcaatggctgcaacc 54589932

                                                             
Query: 1095     tgcagcctggggacctcttgggttctggaatcatcagcgggccgg 1139
                |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 54589933 tgcagcctggggacctcttgggttctggaaccatcagcgggccgg 54589977



 Score =  151 bits (76), Expect = 1e-33
 Identities = 79/80 (98%)
 Strand = Plus / Plus

                                                                            
Query: 911      caggaccccaagcctctgccatatctccgccatgaccagccctacatgttcgacatcaac 970
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 54585076 caggaccccaagcctctgccatatctccgccacgaccagccctacatgttcgacatcaac 54585135

                                    
Query: 971      ctctctgtcgccctgaaagg 990
                ||||||||||||||||||||
Sbjct: 54585136 ctctctgtcgccctgaaagg 54585155



 Score =  123 bits (62), Expect = 2e-25
 Identities = 65/66 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1138     ggagccagaaagctttggctccatgctggagctgtcgtgaaggggaacaaaggccataga 1197
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 54590629 ggagccagaaagctttggctccatgctggagctgtcgtggaggggaacaaaggccataga 54590688

                      
Query: 1198     gctggg 1203
                ||||||
Sbjct: 54590689 gctggg 54590694



 Score =  107 bits (54), Expect = 1e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                      
Query: 630      ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 683
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54579593 ctaagcctcctgtgtatggtgcctgcaaactcttggacatggagttggaaatgg 54579646



 Score =  103 bits (52), Expect = 2e-19
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                            
Query: 390      gcgcattcacctcccaggcctccgccacgatgcatcttcctgcctccataggtgactaca 449
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 54564600 gcgcattcacctcccaggcctccgccacgatgcatcttcctgccgccataggtgagtaca 54564659



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                                 
Query: 988      aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 1036
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54587466 aggagaaggaatgagccaagcggctaccatatgcaggtccaactttaag 54587514


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,719,109
Number of extensions: 231
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 13
Length of query: 1203
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1182
Effective length of database: 2,808,413,156
Effective search space: 3319544350392
Effective search space used: 3319544350392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)