Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029522.1| PERP, TP53 apoptosis effector [Bos taurus]. 340 2e-93
Alignment gi|XP_002695039.1| PREDICTED: PERP, TP53 apoptosis effector-lik... 328 6e-90
Alignment gi|XP_873435.1| PREDICTED: PERP, TP53 apoptosis effector-like [... 328 6e-90
Alignment gi|NP_001069730.1| transmembrane protein 47 [Bos taurus]. 80 5e-15
>ref|NP_001029522.1| PERP, TP53 apoptosis effector [Bos taurus].
Length = 184
Score = 340 bits (871), Expect = 2e-93
Identities = 168/193 (87%), Positives = 168/193 (87%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAI FDIIALAGRGWLQSSD QTSSLWW
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIVFDIIALAGRGWLQSSDDSQTSSLWWHCLLEVCDS-- 58
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LM YAWGRAAAAML CGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV
Sbjct: 59 -------LMTYAWGRAAAAMLLCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 111
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTFNLH N AVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL
Sbjct: 112 FQIISLVIYPVKYTQTFNLHLNPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 171
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 172 LGNAKPRYFYTSA 184
>ref|XP_002695039.1| PREDICTED: PERP, TP53 apoptosis effector-like [Bos taurus].
Length = 183
Score = 328 bits (841), Expect = 6e-90
Identities = 165/193 (85%), Positives = 165/193 (85%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAI FDIIALAGRGWLQSSD QTSSLWW
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIVFDIIALAGRGWLQSSDDSQTSSLWWHCLLEVCDS-- 58
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LM YAWGRAAAAML CGFIILVICFILSFFALCGPQML FLRVI GLLALAAV
Sbjct: 59 -------LMTYAWGRAAAAMLLCGFIILVICFILSFFALCGPQMLAFLRVIRGLLALAAV 111
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTFNLH N AVTYIYNWAYGFGWAATIILIGCA FFCCLPNYEDDL
Sbjct: 112 FQIISLVIYPVKYTQTFNLHLNPAVTYIYNWAYGFGWAATIILIGCA-FFCCLPNYEDDL 170
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 171 LGNAKPRYFYTSA 183
>ref|XP_873435.1| PREDICTED: PERP, TP53 apoptosis effector-like [Bos taurus].
Length = 183
Score = 328 bits (841), Expect = 6e-90
Identities = 165/193 (85%), Positives = 165/193 (85%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAI FDIIALAGRGWLQSSD QTSSLWW
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIVFDIIALAGRGWLQSSDDSQTSSLWWHCLLEVCDS-- 58
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LM YAWGRAAAAML CGFIILVICFILSFFALCGPQML FLRVI GLLALAAV
Sbjct: 59 -------LMTYAWGRAAAAMLLCGFIILVICFILSFFALCGPQMLAFLRVIRGLLALAAV 111
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTFNLH N AVTYIYNWAYGFGWAATIILIGCA FFCCLPNYEDDL
Sbjct: 112 FQIISLVIYPVKYTQTFNLHLNPAVTYIYNWAYGFGWAATIILIGCA-FFCCLPNYEDDL 170
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 171 LGNAKPRYFYTSA 183
>ref|NP_001069730.1| transmembrane protein 47 [Bos taurus].
Length = 181
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 236 AIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXXXXXXXXXLMDYAWGRAAAAML 415
A+ D+ A+ W+ ++DH SLW + W A A+L
Sbjct: 30 ALCLDLGAVLSPAWV-TADHQYYLSLW---ESCRKPASLDIWHCESTLSSDWQIATLALL 85
Query: 416 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLHA 595
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
Query: 596 NTAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 706
+ + +NW YG W ATI G A +C P NYED
Sbjct: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,210,649
Number of extensions: 1107723
Number of successful extensions: 4826
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4749
Number of HSP's successfully gapped: 4
Length of query: 404
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,207,134
Effective search space: 4247933066
Effective search space used: 4247933066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533423.1| PREDICTED: similar to PERP, TP53 apoptosis effe... 355 4e-98
Alignment gi|NP_001003045.1| transmembrane protein 47 [Canis lupus famili... 80 5e-15
>ref|XP_533423.1| PREDICTED: similar to PERP, TP53 apoptosis effector [Canis
familiaris].
Length = 193
Score = 355 bits (912), Expect = 4e-98
Identities = 172/193 (89%), Positives = 174/193 (90%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWW+
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWRCSQEGGGSGS 60
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LMD+AWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV
Sbjct: 61 YEEGCQSLMDFAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 120
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTFNLH N AVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL
Sbjct: 121 FQIISLVIYPVKYTQTFNLHDNPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 180
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 181 LGNAKPRYFYTSA 193
>ref|NP_001003045.1| transmembrane protein 47 [Canis lupus familiaris].
Length = 181
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 236 AIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXXXXXXXXXLMDYAWGRAAAAML 415
A+ D+ A+ W+ ++DH SLW + W A A+L
Sbjct: 30 ALCLDLGAVLSPAWV-TADHQYYLSLW---ESCRKPASLDIWHCESTLSSDWQIATLALL 85
Query: 416 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLHA 595
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
Query: 596 NTAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 706
+ + +NW YG W ATI G A +C P NYED
Sbjct: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,825,774
Number of extensions: 1105783
Number of successful extensions: 5166
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5062
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 299
Effective length of database: 15,374,224
Effective search space: 4596892976
Effective search space used: 4596892976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071404.2| p53 apoptosis effector related to PMP-22 [Homo ... 353 2e-97
Alignment gi|NP_113630.1| transmembrane protein 47 [Homo sapiens]. 80 5e-15
>ref|NP_071404.2| p53 apoptosis effector related to PMP-22 [Homo sapiens].
Length = 193
Score = 353 bits (906), Expect = 2e-97
Identities = 171/193 (88%), Positives = 173/193 (89%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
M+RCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDH QTSSLWWK
Sbjct: 1 MIRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHGQTSSLWWKCSQEGGGSGS 60
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LM+YAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV
Sbjct: 61 YEEGCQSLMEYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 120
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTF LHAN AVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL
Sbjct: 121 FQIISLVIYPVKYTQTFTLHANPAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 180
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 181 LGNAKPRYFYTSA 193
>ref|NP_113630.1| transmembrane protein 47 [Homo sapiens].
Length = 181
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 236 AIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXXXXXXXXXLMDYAWGRAAAAML 415
A+ D+ A+ W+ ++DH SLW + W A A+L
Sbjct: 30 ALCLDLGAVLSPAWV-TADHQYYLSLW---ESCRKPASLDIWHCESTLSSDWQIATLALL 85
Query: 416 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLHA 595
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
Query: 596 NTAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 706
+ + +NW YG W ATI G A +C P NYED
Sbjct: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,903,704
Number of extensions: 1081861
Number of successful extensions: 4767
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4659
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,835,944
Effective search space: 4435947256
Effective search space used: 4435947256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071315.1| p53 apoptosis effector related to PMP-22 [Mus m... 336 2e-92
Alignment gi|NP_620090.1| transmembrane protein 47 isoform 2 [Mus musculu... 79 5e-15
>ref|NP_071315.1| p53 apoptosis effector related to PMP-22 [Mus musculus].
Length = 193
Score = 336 bits (861), Expect = 2e-92
Identities = 161/193 (83%), Positives = 167/193 (86%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSS+H+QTSSLWW+
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSNHIQTSSLWWRCFDEGGGSGS 60
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LM+YAWGRAAAA LFCGFIIL ICFILSFFALCGPQMLVFLRVIGGLLALAA+
Sbjct: 61 YDDGCQSLMEYAWGRAAAATLFCGFIILCICFILSFFALCGPQMLVFLRVIGGLLALAAI 120
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTF LH N AV YIYNWAYGFGWAATIILIGC+FFFCCLPNYEDDL
Sbjct: 121 FQIISLVIYPVKYTQTFRLHDNPAVNYIYNWAYGFGWAATIILIGCSFFFCCLPNYEDDL 180
Query: 713 LGNAKPRYFYTSA 751
LG AKPRYFY A
Sbjct: 181 LGAAKPRYFYPPA 193
>ref|NP_620090.1| transmembrane protein 47 isoform 2 [Mus musculus].
Length = 181
Score = 79.3 bits (194), Expect = 5e-15
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 236 AIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXXXXXXXXXLMDYAWGRAAAAML 415
A+ D+ A+ W+ ++DH SLW + W A A+L
Sbjct: 30 ALCLDLGAVLSPAWV-TADHQYYLSLW---ESCRKPANLDIWHCESTLGSDWQIATLALL 85
Query: 416 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLHA 595
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
Query: 596 NTAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 706
+ + +NW YG W ATI G A +C P NYED
Sbjct: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,343,531
Number of extensions: 903890
Number of successful extensions: 3976
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3839
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 300
Effective length of database: 12,493,815
Effective search space: 3748144500
Effective search space used: 3748144500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121228.2| PREDICTED: p53 apoptosis effector related to... 341 4e-94
Alignment gi|XP_003353248.1| PREDICTED: tumor necrosis factor alpha-induc... 96 5e-20
Alignment gi|XP_001925171.1| PREDICTED: transmembrane protein 47-like [Su... 80 3e-15
>ref|XP_003121228.2| PREDICTED: p53 apoptosis effector related to PMP-22-like [Sus
scrofa].
Length = 193
Score = 341 bits (875), Expect = 4e-94
Identities = 167/193 (86%), Positives = 167/193 (86%)
Frame = +2
Query: 173 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXX 352
MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWK
Sbjct: 1 MLRCGLACERCRWILPLLLLSAIAFDIIALAGRGWLQSSDHVQTSSLWWKCSQEGGGSGS 60
Query: 353 XXXXXXXLMDYAWGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAV 532
LMDYAWGRAAAAMLFCGFIILVICF PQMLVFLRVIGGLLALAAV
Sbjct: 61 YEEGCQSLMDYAWGRAAAAMLFCGFIILVICFXXXXXXXXXPQMLVFLRVIGGLLALAAV 120
Query: 533 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 712
FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL
Sbjct: 121 FQIISLVIYPVKYTQTFNLHANTAVTYIYNWAYGFGWAATIILIGCAFFFCCLPNYEDDL 180
Query: 713 LGNAKPRYFYTSA 751
LGNAKPRYFYTSA
Sbjct: 181 LGNAKPRYFYTSA 193
>ref|XP_003353248.1| PREDICTED: tumor necrosis factor alpha-induced protein 3 [Sus
scrofa].
Length = 742
Score = 95.5 bits (236), Expect = 5e-20
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +2
Query: 389 WGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALA 526
WGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALA
Sbjct: 4 WGRAAAAMLFCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALA 49
>ref|XP_001925171.1| PREDICTED: transmembrane protein 47-like [Sus scrofa].
Length = 181
Score = 79.7 bits (195), Expect = 3e-15
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +2
Query: 236 AIAFDIIALAGRGWLQSSDHVQTSSLWWKXXXXXXXXXXXXXXXXXLMDYAWGRAAAAML 415
A+ D+ A+ W+ ++DH SLW + W A A+L
Sbjct: 30 ALCLDLGAVLSPAWV-TADHQYYLSLW---ESCRKPASLDIWHCESTLSSDWQIATLALL 85
Query: 416 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFNLHA 595
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
Query: 596 NTAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 706
+ + +NW YG W ATI G A +C P NYED
Sbjct: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,567,060
Number of extensions: 764836
Number of successful extensions: 3280
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3215
Number of HSP's successfully gapped: 3
Length of query: 404
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,829,335
Effective search space: 2675288505
Effective search space used: 2675288505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002080
(1212 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1146 0.0
gb|JH118751.1| Sus scrofa unplaced genomic scaffold ChrUScaf2247 613 e-172
>Sscrofa_Chr01
|| Length = 315321322
Score = 1146 bits (578), Expect = 0.0
Identities = 635/651 (97%), Gaps = 5/651 (0%)
Strand = Plus / Minus
Query: 527 gctgtgttccagatcatctccttggtcatttaccctgtgaagtacacccagaccttcaac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612835 gctgtgttccagatcatctccttggtcatttaccctgtgaagtacacccagaccttcaac 29612776
Query: 587 cttcatgccaacactgctgtcacttacatctataactgggcctatggcttcgggtgggcg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612775 cttcatgccaacactgctgtcacttacatctataactgggcctatggcttcgggtgggcg 29612716
Query: 647 gccacaattatcctgatcggctgtgccttcttcttctgttgcctccccaactacgaagat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612715 gccacaattatcctgatcggctgtgccttcttcttctgttgcctccccaactacgaagat 29612656
Query: 707 gacctcctgggcaacgccaagccccggtacttctacacatctgcctaaagtgggaaagga 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612655 gacctcctgggcaacgccaagccccggtacttctacacatctgcctaaagtgggaaagga 29612596
Query: 767 gcagaagaaaatcgctgctgcccagatggagtccagagnnnnnnnctgttttccccacaa 826
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 29612595 gcagaagaaaatcgctgctgcccagatggagtccagagaaaaaa-ctgttttccccacaa 29612537
Query: 827 taccttgaatacctatttggggggcactgttcatgttattaaactagagtcaaaatgcta 886
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29612536 taccttgaatacctatttggggggcactgttcatgttattaa-ctagagtcaaaatgcta 29612478
Query: 887 aaataatatttcttaaatggtgttatagtttcatattcatcttttatatatgttttgtag 946
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 29612477 aaataatatttct--aatggtgt-atagtttcatattcatcttttatatatgttttgtag 29612421
Query: 947 tgataaacaagacttactttgaactaatgacctagtgactaacatgccagcgtttcctta 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612420 tgataaacaagacttactttgaactaatgacctagtgactaacatgccagcgtttcctta 29612361
Query: 1007 tatctacccataccatgtataatgcatttgtaaaagaatatgagtatgaaatgtaccata 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612360 tatctacccataccatgtataatgcatttgtaaaagaatatgagtatgaaatgtaccata 29612301
Query: 1067 taatttataaggtaaaaatgagaaggcttccaaagatttaagtaacccgatcaggtttct 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29612300 taatttataaggtaaaaatgagaaggcttccaaagatttaagtaacccgatcaggtttct 29612241
Query: 1127 gtttttctcaaatggaatggactgggtccatttcggactaaggaaaaaagg 1177
|||||||||| ||||||||||||||||| ||| |||||||||| ||||||
Sbjct: 29612240 gtttttctcagatggaatggactgggtctattcaggactaaggagaaaagg 29612190
Score = 684 bits (345), Expect = 0.0
Identities = 348/349 (99%)
Strand = Plus / Plus
Query: 38 agccgggagtcgcgtcctcccggagccgcctccccgcggcttcttcccttttgtcgcgct 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29555799 agccgggagtcgcgtcctcccggagccgcctccccgcggcttcttcccttttgtcgcgct 29555858
Query: 98 ccccgcgctccggggccactctctgcctgcatccgagccacgcgcgttcctctcctccgc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29555859 ccccgcgctccggggccactctctgcctgcatccgagccacgcgcgttcctctcctccgc 29555918
Query: 158 gccaccaccgtcgagatgctgcgctgcggcctggcctgcgagcgctgcaggtggatcctg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29555919 gccaccaccgtcgagatgctgcgctgcggcctggcctgcgagcgctgcaggtggatcctg 29555978
Query: 218 cccctgctgctgctcagcgccattgccttcgacattatcgcgctggccggccgcggctgg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29555979 cccctgctgctgctcagcgccattgccttcgacattatcgcgctggccggccgcggctgg 29556038
Query: 278 ctgcagtcaagcgaccatgtccagacgtcctcgctgtggtggaagtgttctcaggagggc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29556039 ctgcagtcaagcgaccatgtccagacgtcctcgctgtggtggaagtgttctcaggagggc 29556098
Query: 338 ggcggcagcgggtcctacgaggaaggctgccagagtctcatggattacg 386
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 29556099 ggcggcagcgggtcctacgaggagggctgccagagtctcatggattacg 29556147
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 386 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29387734 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 29387793
Query: 446 ttcatcctctccttctttgccctctgtggaccccaaatgcttgtcttcctgcgagtgatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29387794 ttcatcctctccttctttgccctctgtggaccccaaatgcttgtcttcctgcgagtgatc 29387853
Query: 506 ggaggcctcctggccctggctg 527
||||||||||||||||||||||
Sbjct: 29387854 ggaggcctcctggccctggctg 29387875
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 386 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29469488 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 29469547
Query: 446 ttcatcctctccttctttgccctctgtggaccccaaatgcttgtcttcctgcgagtgatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29469548 ttcatcctctccttctttgccctctgtggaccccaaatgcttgtcttcctgcgagtgatc 29469607
Query: 506 ggaggcctcctggccctggctg 527
||||||||||||||||||||||
Sbjct: 29469608 ggaggcctcctggccctggctg 29469629
>gb|JH118751.1| Sus scrofa unplaced genomic scaffold ChrUScaf2247
Length = 62471
Score = 613 bits (309), Expect = e-172
Identities = 309/309 (100%)
Strand = Plus / Plus
Query: 78 ttcttcccttttgtcgcgctccccgcgctccggggccactctctgcctgcatccgagcca 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 ttcttcccttttgtcgcgctccccgcgctccggggccactctctgcctgcatccgagcca 7573
Query: 138 cgcgcgttcctctcctccgcgccaccaccgtcgagatgctgcgctgcggcctggcctgcg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 cgcgcgttcctctcctccgcgccaccaccgtcgagatgctgcgctgcggcctggcctgcg 7633
Query: 198 agcgctgcaggtggatcctgcccctgctgctgctcagcgccattgccttcgacattatcg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 agcgctgcaggtggatcctgcccctgctgctgctcagcgccattgccttcgacattatcg 7693
Query: 258 cgctggccggccgcggctggctgcagtcaagcgaccatgtccagacgtcctcgctgtggt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 cgctggccggccgcggctggctgcagtcaagcgaccatgtccagacgtcctcgctgtggt 7753
Query: 318 ggaagtgttctcaggagggcggcggcagcgggtcctacgaggaaggctgccagagtctca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 ggaagtgttctcaggagggcggcggcagcgggtcctacgaggaaggctgccagagtctca 7813
Query: 378 tggattacg 386
|||||||||
Sbjct: 7814 tggattacg 7822
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 386 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18808 gcctggggaagggcagccgctgccatgctcttctgtggctttatcatcctggtgatctgt 18867
Query: 446 ttc 448
|||
Sbjct: 18868 ttc 18870
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,813,045
Number of extensions: 279
Number of successful extensions: 279
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 7
Length of query: 1212
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1191
Effective length of database: 2,808,413,156
Effective search space: 3344820068796
Effective search space used: 3344820068796
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)