Animal-Genome cDNA 20110601C-002091


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029640.1| glutaminyl-tRNA synthetase [Bos taurus].          626   e-180
Alignment   gi|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus].      66   5e-11
Alignment   gi|XP_002698070.1| PREDICTED: glutamyl-tRNA synthetase 2-like [...    51   2e-06

>ref|NP_001029640.1| glutaminyl-tRNA synthetase [Bos taurus].
          Length = 775

 Score =  626 bits (1615), Expect(2) = e-180
 Identities = 312/331 (94%), Positives = 321/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSE KARETLKNT LSAQLREAATQAQQTLGS+IDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEQKARETLKNTVLSAQLREAATQAQQTLGSSIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYI SRKIHTETQLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYITSRKIHTETQLSAALEYVRSHPLDPINTEDFEQECGVGVVVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR+KLLVERYHF+MGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRAKLLVERYHFSMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKVAKAR EE D+ TAKDVVENGE VVQTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVAKARPEETDQRTAKDVVENGEVVVQTLSLMEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHL+ITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLDITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAI DMVAWLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAIYDMVAWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-180
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus].
          Length = 1511

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 34/68 (50%), Positives = 40/68 (58%)
 Frame = +1

Query: 817  GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
            G++  RFPPE +G LHIGHAKA   N  Y     G   +RFDDTNPEKE+  F   I + 
Sbjct: 196  GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255

Query: 997  VAWLGYTP 1020
            VA L   P
Sbjct: 256  VAMLHIKP 263


>ref|XP_002698070.1| PREDICTED: glutamyl-tRNA synthetase 2-like [Bos taurus].
          Length = 523

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +1

Query: 814  GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
            G  +R RF P P G LH+G  +   +N+ +AK + G   LR +DT+  +        I D
Sbjct: 34   GAAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQTRLVPGAAENIED 93

Query: 994  MVAWLGYTP 1020
            M+ W G  P
Sbjct: 94   MLEWAGVPP 102


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,169,337
Number of extensions: 1367215
Number of successful extensions: 4991
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4973
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533833.2| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862520.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862543.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862494.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862441.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862415.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   616   e-177
Alignment   gi|XP_862570.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   610   e-175
Alignment   gi|XP_862468.1| PREDICTED: similar to glutaminyl-tRNA synthetas...   608   e-174
Alignment   gi|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synt...    68   2e-11
Alignment   gi|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synt...    68   2e-11

>ref|XP_533833.2| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 1 [Canis
            familiaris].
          Length = 775

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862520.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 7 [Canis
            familiaris].
          Length = 764

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862543.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 8 [Canis
            familiaris].
          Length = 760

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862494.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 6 [Canis
            familiaris].
          Length = 746

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862441.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 4 [Canis
            familiaris].
          Length = 695

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862415.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 3 [Canis
            familiaris].
          Length = 695

 Score =  616 bits (1589), Expect(2) = e-177
 Identities = 306/331 (92%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-177
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|XP_862570.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 9 [Canis
            familiaris].
          Length = 774

 Score =  610 bits (1573), Expect(2) = e-175
 Identities = 304/331 (91%), Positives = 318/331 (96%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGE  ++TLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGER-LETLSLIEQLRGEALKFHKPGENYKT 239

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 240  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 299

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 300  RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 330



 Score = 23.9 bits (50), Expect(2) = e-175
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 330  KVTYASDYFD 339


>ref|XP_862468.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 5 [Canis
            familiaris].
          Length = 375

 Score =  608 bits (1569), Expect = e-174
 Identities = 309/341 (90%), Positives = 321/341 (94%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1    MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61   SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
            TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA  QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181  TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR*HMPLTILTA 1056
            RFDDTNPEKEEAKFFTAICDMV  L     R HMPLTILT+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVTLL----TRLHMPLTILTS 337


>ref|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 5
            [Canis familiaris].
          Length = 1508

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +1

Query: 769  TPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRF 939
            TP     + + +E+ G   G++  RFPPE +G LHIGHAKA   N  Y     G   +RF
Sbjct: 177  TPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRF 236

Query: 940  DDTNPEKEEAKFFTAICDMVAWLGYTP 1020
            DDTNPEKE+  F   I + VA L   P
Sbjct: 237  DDTNPEKEKEDFEKVILEDVAMLHIKP 263


>ref|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
            [Canis familiaris].
          Length = 1534

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +1

Query: 769  TPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRF 939
            TP     + + +E+ G   G++  RFPPE +G LHIGHAKA   N  Y     G   +RF
Sbjct: 177  TPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRF 236

Query: 940  DDTNPEKEEAKFFTAICDMVAWLGYTP 1020
            DDTNPEKE+  F   I + VA L   P
Sbjct: 237  DDTNPEKEKEDFEKVILEDVAMLHIKP 263


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,106,966
Number of extensions: 1407188
Number of successful extensions: 5386
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5365
Number of HSP's successfully gapped: 20
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005042.1| glutaminyl-tRNA synthetase [Homo sapiens].           607   e-174
Alignment   gi|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sa...    66   5e-11
Alignment   gi|NP_001077083.1| probable glutamyl-tRNA synthetase, mitochond...    49   8e-06

>ref|NP_005042.1| glutaminyl-tRNA synthetase [Homo sapiens].
          Length = 775

 Score =  607 bits (1564), Expect(2) = e-174
 Identities = 304/331 (91%), Positives = 315/331 (95%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MAALDSLSLFT LGLSE KARETLKN+ALSAQLREAATQAQQTLGSTIDKATG LLYGLA
Sbjct: 1    MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRD RRLSFLVSYIAS+KIHTE QLSAALEYVRSHPLDPI+T+DFE+ECGVGVIVTPE
Sbjct: 61   SRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVEAAIN HR +LLVERYHFNMGLLMGEARA LKWADGKMIK+EVDMQVLHLLGPK
Sbjct: 121  QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
             E+DLEKK KVAKARLEE DR TAKDVVENGE   QTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181  LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYV TPHTM+LLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAICDMVAWLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYK 331



 Score = 23.9 bits (50), Expect(2) = e-174
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sapiens].
          Length = 1512

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 34/68 (50%), Positives = 40/68 (58%)
 Frame = +1

Query: 817  GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
            G++  RFPPE +G LHIGHAKA   N  Y     G   +RFDDTNPEKE+  F   I + 
Sbjct: 196  GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255

Query: 997  VAWLGYTP 1020
            VA L   P
Sbjct: 256  VAMLHIKP 263


>ref|NP_001077083.1| probable glutamyl-tRNA synthetase, mitochondrial precursor [Homo
            sapiens].
          Length = 523

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +1

Query: 814  GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
            G  +R RF P P G LH+G  +   +N+ +AK   G   LR +DT+  +        I D
Sbjct: 34   GVAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTRVVPGAAENIED 93

Query: 994  MVAWLGYTP 1020
            M+ W G  P
Sbjct: 94   MLEWAGIPP 102


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,094,288
Number of extensions: 1373423
Number of successful extensions: 4837
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4817
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598555.2| glutaminyl-tRNA synthetase isoform 1 [Mus muscu...   569   e-164
Alignment   gi|NP_001161742.1| glutaminyl-tRNA synthetase isoform 2 [Mus mu...   300   1e-83
Alignment   gi|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus mus...    66   4e-11
Alignment   gi|NP_080416.1| probable glutamyl-tRNA synthetase, mitochondria...    52   6e-07

>ref|NP_598555.2| glutaminyl-tRNA synthetase isoform 1 [Mus musculus].
          Length = 775

 Score =  569 bits (1467), Expect(3) = e-164
 Identities = 285/331 (86%), Positives = 300/331 (90%)
 Frame = +1

Query: 34   MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
            MA  DSL+LFTGLGLSE+KARETLKN ALS QLREAATQA Q LGSTIDKATG LLY L 
Sbjct: 1    MATPDSLALFTGLGLSENKARETLKNEALSTQLREAATQAHQILGSTIDKATGVLLYDLV 60

Query: 214  SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
            SRLRD RR SFLVSYIA++KIHT  QLSAALEYVRSHP DPI+T DFEQECGVGV+VTPE
Sbjct: 61   SRLRDTRRRSFLVSYIANKKIHTGLQLSAALEYVRSHPQDPIDTKDFEQECGVGVVVTPE 120

Query: 394  QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
            QIEEAVE+ IN H+ +LL ERY FNMGLLMGEARAAL+WADGKMIK+EVDMQVLHLLGPK
Sbjct: 121  QIEEAVESTINKHQLQLLAERYRFNMGLLMGEARAALRWADGKMIKNEVDMQVLHLLGPK 180

Query: 574  TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
             E+DL KKPKVAKARLEE DR TAKDVVE GE   QTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181  MEADLVKKPKVAKARLEETDRKTAKDVVEKGEVAGQTLSLMEQLRGEALKFHKPGENYKT 240

Query: 754  PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
            PGYV TP+TMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241  PGYVITPYTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300

Query: 934  RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            RFDDTNPEKEEAKFFTAI DMV WLGYTPY+
Sbjct: 301  RFDDTNPEKEEAKFFTAIYDMVTWLGYTPYK 331



 Score = 26.2 bits (56), Expect(3) = e-164
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1046 F*QLMAWAVKLIPGGL 1093
            F QL AWAV+LI GGL
Sbjct: 339  FDQLYAWAVELIHGGL 354



 Score = 23.9 bits (50), Expect(3) = e-164
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 331  KVTYASDYFD 340


>ref|NP_001161742.1| glutaminyl-tRNA synthetase isoform 2 [Mus musculus].
          Length = 606

 Score =  300 bits (769), Expect(3) = 1e-83
 Identities = 144/160 (90%), Positives = 149/160 (93%)
 Frame = +1

Query: 547  QVLHLLGPKTESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKF 726
            +VLHLLGPK E+DL KKPKVAKARLEE DR TAKDVVE GE   QTLSLMEQLRGEALKF
Sbjct: 3    EVLHLLGPKMEADLVKKPKVAKARLEETDRKTAKDVVEKGEVAGQTLSLMEQLRGEALKF 62

Query: 727  HKPGENYKTPGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYA 906
            HKPGENYKTPGYV TP+TMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYA
Sbjct: 63   HKPGENYKTPGYVITPYTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYA 122

Query: 907  KANNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
            KANNGICFLRFDDTNPEKEEAKFFTAI DMV WLGYTPY+
Sbjct: 123  KANNGICFLRFDDTNPEKEEAKFFTAIYDMVTWLGYTPYK 162



 Score = 26.2 bits (56), Expect(3) = 1e-83
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 1046 F*QLMAWAVKLIPGGL 1093
            F QL AWAV+LI GGL
Sbjct: 170  FDQLYAWAVELIHGGL 185



 Score = 23.9 bits (50), Expect(3) = 1e-83
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +3

Query: 1023 QVTYASDYFD 1052
            +VTYASDYFD
Sbjct: 162  KVTYASDYFD 171


>ref|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus musculus].
          Length = 1512

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 34/68 (50%), Positives = 40/68 (58%)
 Frame = +1

Query: 817  GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
            G++  RFPPE +G LHIGHAKA   N  Y     G   +RFDDTNPEKE+  F   I + 
Sbjct: 196  GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255

Query: 997  VAWLGYTP 1020
            VA L   P
Sbjct: 256  VAMLHIKP 263


>ref|NP_080416.1| probable glutamyl-tRNA synthetase, mitochondrial precursor [Mus
            musculus].
          Length = 523

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%)
 Frame = +1

Query: 814  GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
            G  +R RF P P G LH+G  +   +N+ +AK + G   LR +DT+  +       +I D
Sbjct: 34   GAPVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQSRLVPGAAESIED 93

Query: 994  MVAWLGYTP 1020
            M+ W G  P
Sbjct: 94   MLEWAGIPP 102


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,766,656
Number of extensions: 1142047
Number of successful extensions: 4152
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4123
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional...    67   2e-11
Alignment   gi|XP_003130516.1| PREDICTED: probable glutamyl-tRNA synthetase...    51   1e-06

>ref|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
            synthetase [Sus scrofa].
          Length = 1432

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
 Frame = +1

Query: 742  NYKTPGYVTTPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKA 912
            N  T      P     + + +E+ G   G++  RFPPE +G LHIGHAKA   N  Y   
Sbjct: 168  NASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVN 227

Query: 913  NNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTP 1020
              G   +RFDDTNPEKE+  F   I + VA L   P
Sbjct: 228  FKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKP 263


>ref|XP_003130516.1| PREDICTED: probable glutamyl-tRNA synthetase, mitochondrial-like [Sus
            scrofa].
          Length = 523

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +1

Query: 814  GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
            G  +R RF P P G LH+G  +   +N+ +AK + G   LR +DT+  +        I D
Sbjct: 34   GAAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHGGSFILRLEDTDQTRLVPGAAENIED 93

Query: 994  MVAWLGYTP 1020
            M+ W G  P
Sbjct: 94   MLEWAGIPP 102


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,783,203
Number of extensions: 883080
Number of successful extensions: 3241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3229
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002091
         (1095 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done

 ***** No hits found ******


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,804,962
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 0
Length of query: 1095
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1074
Effective length of database: 2,808,413,156
Effective search space: 3016235729544
Effective search space used: 3016235729544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)