Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029640.1| glutaminyl-tRNA synthetase [Bos taurus]. 626 e-180
Alignment gi|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus]. 66 5e-11
Alignment gi|XP_002698070.1| PREDICTED: glutamyl-tRNA synthetase 2-like [... 51 2e-06
>ref|NP_001029640.1| glutaminyl-tRNA synthetase [Bos taurus].
Length = 775
Score = 626 bits (1615), Expect(2) = e-180
Identities = 312/331 (94%), Positives = 321/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSE KARETLKNT LSAQLREAATQAQQTLGS+IDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEQKARETLKNTVLSAQLREAATQAQQTLGSSIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYI SRKIHTETQLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYITSRKIHTETQLSAALEYVRSHPLDPINTEDFEQECGVGVVVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR+KLLVERYHF+MGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRAKLLVERYHFSMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKVAKAR EE D+ TAKDVVENGE VVQTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVAKARPEETDQRTAKDVVENGEVVVQTLSLMEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHL+ITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLDITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAI DMVAWLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAIYDMVAWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-180
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|NP_001230249.1| glutamyl-prolyl-tRNA synthetase [Bos taurus].
Length = 1511
Score = 66.2 bits (160), Expect = 5e-11
Identities = 34/68 (50%), Positives = 40/68 (58%)
Frame = +1
Query: 817 GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
G++ RFPPE +G LHIGHAKA N Y G +RFDDTNPEKE+ F I +
Sbjct: 196 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255
Query: 997 VAWLGYTP 1020
VA L P
Sbjct: 256 VAMLHIKP 263
>ref|XP_002698070.1| PREDICTED: glutamyl-tRNA synthetase 2-like [Bos taurus].
Length = 523
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +1
Query: 814 GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
G +R RF P P G LH+G + +N+ +AK + G LR +DT+ + I D
Sbjct: 34 GAAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQTRLVPGAAENIED 93
Query: 994 MVAWLGYTP 1020
M+ W G P
Sbjct: 94 MLEWAGVPP 102
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,169,337
Number of extensions: 1367215
Number of successful extensions: 4991
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4973
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533833.2| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862520.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862543.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862494.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862441.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862415.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 616 e-177
Alignment gi|XP_862570.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 610 e-175
Alignment gi|XP_862468.1| PREDICTED: similar to glutaminyl-tRNA synthetas... 608 e-174
Alignment gi|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synt... 68 2e-11
Alignment gi|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synt... 68 2e-11
>ref|XP_533833.2| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 1 [Canis
familiaris].
Length = 775
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862520.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 7 [Canis
familiaris].
Length = 764
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862543.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 760
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862494.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 6 [Canis
familiaris].
Length = 746
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862441.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 4 [Canis
familiaris].
Length = 695
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862415.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 695
Score = 616 bits (1589), Expect(2) = e-177
Identities = 306/331 (92%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-177
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|XP_862570.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 9 [Canis
familiaris].
Length = 774
Score = 610 bits (1573), Expect(2) = e-175
Identities = 304/331 (91%), Positives = 318/331 (96%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGE ++TLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGER-LETLSLIEQLRGEALKFHKPGENYKT 239
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 240 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 299
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMV WLGYTPY+
Sbjct: 300 RFDDTNPEKEEAKFFTAICDMVTWLGYTPYK 330
Score = 23.9 bits (50), Expect(2) = e-175
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 330 KVTYASDYFD 339
>ref|XP_862468.1| PREDICTED: similar to glutaminyl-tRNA synthetase isoform 5 [Canis
familiaris].
Length = 375
Score = 608 bits (1569), Expect = e-174
Identities = 309/341 (90%), Positives = 321/341 (94%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA
Sbjct: 1 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRDPRRLSFLVSYIA++KIHTE QLSAALEYVRSHPLDPINT DFEQECGVGV+VTPE
Sbjct: 61 SRLRDPRRLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LL ERY FNMGLLMGEARA LKWADGKMIKHEVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
TE+DLEKKPKV+KAR EEKD+ TAK ++ENGEA QTLSL+EQLRGEALKFHKPGENYKT
Sbjct: 181 TETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYVTTPHTMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR*HMPLTILTA 1056
RFDDTNPEKEEAKFFTAICDMV L R HMPLTILT+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVTLL----TRLHMPLTILTS 337
>ref|XP_858992.1| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 5
[Canis familiaris].
Length = 1508
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +1
Query: 769 TPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRF 939
TP + + +E+ G G++ RFPPE +G LHIGHAKA N Y G +RF
Sbjct: 177 TPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRF 236
Query: 940 DDTNPEKEEAKFFTAICDMVAWLGYTP 1020
DDTNPEKE+ F I + VA L P
Sbjct: 237 DDTNPEKEKEDFEKVILEDVAMLHIKP 263
>ref|XP_536120.2| PREDICTED: similar to glutamyl-prolyl tRNA synthetase isoform 1
[Canis familiaris].
Length = 1534
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +1
Query: 769 TPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRF 939
TP + + +E+ G G++ RFPPE +G LHIGHAKA N Y G +RF
Sbjct: 177 TPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRF 236
Query: 940 DDTNPEKEEAKFFTAICDMVAWLGYTP 1020
DDTNPEKE+ F I + VA L P
Sbjct: 237 DDTNPEKEKEDFEKVILEDVAMLHIKP 263
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,106,966
Number of extensions: 1407188
Number of successful extensions: 5386
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5365
Number of HSP's successfully gapped: 20
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005042.1| glutaminyl-tRNA synthetase [Homo sapiens]. 607 e-174
Alignment gi|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sa... 66 5e-11
Alignment gi|NP_001077083.1| probable glutamyl-tRNA synthetase, mitochond... 49 8e-06
>ref|NP_005042.1| glutaminyl-tRNA synthetase [Homo sapiens].
Length = 775
Score = 607 bits (1564), Expect(2) = e-174
Identities = 304/331 (91%), Positives = 315/331 (95%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MAALDSLSLFT LGLSE KARETLKN+ALSAQLREAATQAQQTLGSTIDKATG LLYGLA
Sbjct: 1 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLA 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRD RRLSFLVSYIAS+KIHTE QLSAALEYVRSHPLDPI+T+DFE+ECGVGVIVTPE
Sbjct: 61 SRLRDTRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVEAAIN HR +LLVERYHFNMGLLMGEARA LKWADGKMIK+EVDMQVLHLLGPK
Sbjct: 121 QIEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
E+DLEKK KVAKARLEE DR TAKDVVENGE QTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181 LEADLEKKFKVAKARLEETDRRTAKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYV TPHTM+LLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAICDMVAWLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYK 331
Score = 23.9 bits (50), Expect(2) = e-174
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|NP_004437.2| bifunctional aminoacyl-tRNA synthetase [Homo sapiens].
Length = 1512
Score = 66.2 bits (160), Expect = 5e-11
Identities = 34/68 (50%), Positives = 40/68 (58%)
Frame = +1
Query: 817 GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
G++ RFPPE +G LHIGHAKA N Y G +RFDDTNPEKE+ F I +
Sbjct: 196 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255
Query: 997 VAWLGYTP 1020
VA L P
Sbjct: 256 VAMLHIKP 263
>ref|NP_001077083.1| probable glutamyl-tRNA synthetase, mitochondrial precursor [Homo
sapiens].
Length = 523
Score = 48.9 bits (115), Expect = 8e-06
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 814 GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
G +R RF P P G LH+G + +N+ +AK G LR +DT+ + I D
Sbjct: 34 GVAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTRVVPGAAENIED 93
Query: 994 MVAWLGYTP 1020
M+ W G P
Sbjct: 94 MLEWAGIPP 102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,094,288
Number of extensions: 1373423
Number of successful extensions: 4837
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4817
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598555.2| glutaminyl-tRNA synthetase isoform 1 [Mus muscu... 569 e-164
Alignment gi|NP_001161742.1| glutaminyl-tRNA synthetase isoform 2 [Mus mu... 300 1e-83
Alignment gi|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus mus... 66 4e-11
Alignment gi|NP_080416.1| probable glutamyl-tRNA synthetase, mitochondria... 52 6e-07
>ref|NP_598555.2| glutaminyl-tRNA synthetase isoform 1 [Mus musculus].
Length = 775
Score = 569 bits (1467), Expect(3) = e-164
Identities = 285/331 (86%), Positives = 300/331 (90%)
Frame = +1
Query: 34 MAALDSLSLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLA 213
MA DSL+LFTGLGLSE+KARETLKN ALS QLREAATQA Q LGSTIDKATG LLY L
Sbjct: 1 MATPDSLALFTGLGLSENKARETLKNEALSTQLREAATQAHQILGSTIDKATGVLLYDLV 60
Query: 214 SRLRDPRRLSFLVSYIASRKIHTETQLSAALEYVRSHPLDPINTMDFEQECGVGVIVTPE 393
SRLRD RR SFLVSYIA++KIHT QLSAALEYVRSHP DPI+T DFEQECGVGV+VTPE
Sbjct: 61 SRLRDTRRRSFLVSYIANKKIHTGLQLSAALEYVRSHPQDPIDTKDFEQECGVGVVVTPE 120
Query: 394 QIEEAVEAAINHHRSKLLVERYHFNMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPK 573
QIEEAVE+ IN H+ +LL ERY FNMGLLMGEARAAL+WADGKMIK+EVDMQVLHLLGPK
Sbjct: 121 QIEEAVESTINKHQLQLLAERYRFNMGLLMGEARAALRWADGKMIKNEVDMQVLHLLGPK 180
Query: 574 TESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKFHKPGENYKT 753
E+DL KKPKVAKARLEE DR TAKDVVE GE QTLSLMEQLRGEALKFHKPGENYKT
Sbjct: 181 MEADLVKKPKVAKARLEETDRKTAKDVVEKGEVAGQTLSLMEQLRGEALKFHKPGENYKT 240
Query: 754 PGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 933
PGYV TP+TMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL
Sbjct: 241 PGYVITPYTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFL 300
Query: 934 RFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
RFDDTNPEKEEAKFFTAI DMV WLGYTPY+
Sbjct: 301 RFDDTNPEKEEAKFFTAIYDMVTWLGYTPYK 331
Score = 26.2 bits (56), Expect(3) = e-164
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 1046 F*QLMAWAVKLIPGGL 1093
F QL AWAV+LI GGL
Sbjct: 339 FDQLYAWAVELIHGGL 354
Score = 23.9 bits (50), Expect(3) = e-164
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 331 KVTYASDYFD 340
>ref|NP_001161742.1| glutaminyl-tRNA synthetase isoform 2 [Mus musculus].
Length = 606
Score = 300 bits (769), Expect(3) = 1e-83
Identities = 144/160 (90%), Positives = 149/160 (93%)
Frame = +1
Query: 547 QVLHLLGPKTESDLEKKPKVAKARLEEKDRVTAKDVVENGEAVVQTLSLMEQLRGEALKF 726
+VLHLLGPK E+DL KKPKVAKARLEE DR TAKDVVE GE QTLSLMEQLRGEALKF
Sbjct: 3 EVLHLLGPKMEADLVKKPKVAKARLEETDRKTAKDVVEKGEVAGQTLSLMEQLRGEALKF 62
Query: 727 HKPGENYKTPGYVTTPHTMDLLKQHLEITGGQIRTRFPPEPNGILHIGHAKAINFNFGYA 906
HKPGENYKTPGYV TP+TMDLLKQHLEITGGQ+RTRFPPEPNGILHIGHAKAINFNFGYA
Sbjct: 63 HKPGENYKTPGYVITPYTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYA 122
Query: 907 KANNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTPYR 1026
KANNGICFLRFDDTNPEKEEAKFFTAI DMV WLGYTPY+
Sbjct: 123 KANNGICFLRFDDTNPEKEEAKFFTAIYDMVTWLGYTPYK 162
Score = 26.2 bits (56), Expect(3) = 1e-83
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 1046 F*QLMAWAVKLIPGGL 1093
F QL AWAV+LI GGL
Sbjct: 170 FDQLYAWAVELIHGGL 185
Score = 23.9 bits (50), Expect(3) = 1e-83
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 1023 QVTYASDYFD 1052
+VTYASDYFD
Sbjct: 162 KVTYASDYFD 171
>ref|NP_084011.1| bifunctional aminoacyl-tRNA synthetase [Mus musculus].
Length = 1512
Score = 66.2 bits (160), Expect = 4e-11
Identities = 34/68 (50%), Positives = 40/68 (58%)
Frame = +1
Query: 817 GQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDM 996
G++ RFPPE +G LHIGHAKA N Y G +RFDDTNPEKE+ F I +
Sbjct: 196 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILED 255
Query: 997 VAWLGYTP 1020
VA L P
Sbjct: 256 VAMLHIKP 263
>ref|NP_080416.1| probable glutamyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 523
Score = 52.4 bits (124), Expect = 6e-07
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +1
Query: 814 GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
G +R RF P P G LH+G + +N+ +AK + G LR +DT+ + +I D
Sbjct: 34 GAPVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHQGSFILRLEDTDQSRLVPGAAESIED 93
Query: 994 MVAWLGYTP 1020
M+ W G P
Sbjct: 94 MLEWAGIPP 102
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,766,656
Number of extensions: 1142047
Number of successful extensions: 4152
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4123
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional... 67 2e-11
Alignment gi|XP_003130516.1| PREDICTED: probable glutamyl-tRNA synthetase... 51 1e-06
>ref|XP_003130565.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA
synthetase [Sus scrofa].
Length = 1432
Score = 66.6 bits (161), Expect = 2e-11
Identities = 39/96 (40%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +1
Query: 742 NYKTPGYVTTPHTMDLLKQHLEITG---GQIRTRFPPEPNGILHIGHAKAINFNFGYAKA 912
N T P + + +E+ G G++ RFPPE +G LHIGHAKA N Y
Sbjct: 168 NASTTKAKVVPEKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVN 227
Query: 913 NNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTP 1020
G +RFDDTNPEKE+ F I + VA L P
Sbjct: 228 FKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKP 263
>ref|XP_003130516.1| PREDICTED: probable glutamyl-tRNA synthetase, mitochondrial-like [Sus
scrofa].
Length = 523
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +1
Query: 814 GGQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICD 993
G +R RF P P G LH+G + +N+ +AK + G LR +DT+ + I D
Sbjct: 34 GAAVRVRFAPSPTGFLHLGGLRTALYNYIFAKKHGGSFILRLEDTDQTRLVPGAAENIED 93
Query: 994 MVAWLGYTP 1020
M+ W G P
Sbjct: 94 MLEWAGIPP 102
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,783,203
Number of extensions: 883080
Number of successful extensions: 3241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3229
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002091
(1095 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,804,962
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 0
Length of query: 1095
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1074
Effective length of database: 2,808,413,156
Effective search space: 3016235729544
Effective search space used: 3016235729544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)