Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos tau... 355 5e-98
Alignment gi|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos tau... 59 1e-08
Alignment gi|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos tau... 54 2e-07
Alignment gi|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus]. 50 3e-06
Alignment gi|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos tauru... 50 4e-06
>ref|NP_001013605.1| malate dehydrogenase, mitochondrial [Bos taurus].
Length = 278
Score = 355 bits (911), Expect = 5e-98
Identities = 177/180 (98%), Positives = 179/180 (99%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELK LDPARV+VP
Sbjct: 136 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKDLDPARVNVP 195
Score = 70.5 bits (171), Expect = 3e-12
Identities = 36/83 (43%), Positives = 41/83 (49%)
Frame = +3
Query: 669 FCCRAEGFGPGSSQRSRHWRPRREDHHPAHLSVHPEGGLSAGPALXXXXXXXXXXXXXXX 848
F + P RH RPR E+HHP L VHP+GG+S GPA
Sbjct: 180 FVAELKDLDPARVNVPRHRRPRWENHHPLDLPVHPQGGISPGPADHPHRSDPGSWHRGGQ 239
Query: 849 XXXXSRLCHPVHGICRSPVCLLP 917
S LCHPVHGI SP+CLLP
Sbjct: 240 GEGRSGLCHPVHGIRWSPLCLLP 262
>ref|NP_001106720.1| L-lactate dehydrogenase C isoform 1 [Bos taurus].
Length = 332
Score = 58.5 bits (140), Expect = 1e-08
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 22/299 (7%)
Frame = +1
Query: 199 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 369
+ +K+ ++G +G +G ++ + L L L D+ G DL H T K
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77
Query: 370 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 549
G + +V+I AG ++ G +R +L N I+ ++ A Q+ PD + I
Sbjct: 78 VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135
Query: 550 ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 729
+SNPV+ +T V+K G+ I LD R + + G+ P+ +IG
Sbjct: 136 VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192
Query: 730 HAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----G 861
H G + +PL + PK+ D +D + + + E++K K G
Sbjct: 193 H-GDSSVPLWSGVNVAGVALKSLDPKLGSDSDKDSWKNIHKEVVGSAYEIIKLKGYTSWG 251
Query: 862 AGSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1029
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 252 IGLSVTDLVKSILKNLRRVHPVSTMVKGSYGIKEEIFL----------SIPCVLGRNGV 300
>ref|NP_001039887.2| L-lactate dehydrogenase C isoform 2 [Bos taurus].
Length = 241
Score = 54.3 bits (129), Expect = 2e-07
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 3/191 (1%)
Frame = +1
Query: 199 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRA-TVKG 369
+ +K+ ++G +G +G ++ + L L L D+ G DL H T K
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVVTDKLKGETMDLQHGSLFFNTPKI 77
Query: 370 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 549
G + +V+I AG ++ G +R +L N I+ ++ A Q+ PD + I
Sbjct: 78 VSGKDYTVSA--NSKLVIITAGARQQEGESRLNLVQRNVDIMKSVIPAIVQNSPDCKMLI 135
Query: 550 ISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGG 729
+SNPV+ +T V+K G+ I LD R + + G+ P+ +IG
Sbjct: 136 VSNPVDI---LTYVVWKLSGLPATRVIGSGCNLDSARFRYLIGQKLGVHPSSCHGWIIGE 192
Query: 730 HAGKTIIPLIS 762
H G + +PL S
Sbjct: 193 H-GDSSVPLWS 202
>ref|NP_776525.1| L-lactate dehydrogenase B chain [Bos taurus].
Length = 334
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ P +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPACIIIVVS 138
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 736 GKTI 747
++
Sbjct: 196 DSSV 199
>ref|NP_001030352.1| L-lactate dehydrogenase A-like 6B [Bos taurus].
Length = 381
Score = 50.1 bits (118), Expect = 4e-06
Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 23/323 (7%)
Frame = +1
Query: 202 NAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSHIETRATVKGY 372
N+K++++G S G+ +S+LLK L L L D+ G DL H +
Sbjct: 69 NSKISIVGTGSVGMACAVSILLKG--LSDELALVDVDEGRLKGETMDLQHGSLFVKMPNI 126
Query: 373 LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 552
+ ++V+I AG ++ G TR +L N I + ++ Q+ P + ++
Sbjct: 127 VSSRDYV-VTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMMSSIVQYSPRCKLIVV 185
Query: 553 SNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGG 729
SNPV+ I V K + N++ G LD R + + + ++G
Sbjct: 186 SNPVD----ILTYVAWKLSAFPQNRVIGSGCNLDTARFRFLIGQRLSIHSESCHGWILGE 241
Query: 730 HAGKTIIPLIS------------QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA----- 858
H G + +P+ S D +Q + + + E++K K
Sbjct: 242 H-GDSSVPVWSGVNIAGVPLKELNLDIGTDKDPEQWKNVHKDVVASAYEIIKMKGYTYWA 300
Query: 859 -GAGSATLSMA-YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIE 1032
G A L+ + R V + + G G+ E F+ S P +LG+ GI
Sbjct: 301 IGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL----------SVPCILGESGIT 350
Query: 1033 KNLGIGKISPFEEKMIAEAIPEL 1101
+ + K++P EE + ++ L
Sbjct: 351 DLIKV-KLAPEEEARLQKSAKTL 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,213,437
Number of extensions: 1497857
Number of successful extensions: 6665
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6651
Number of HSP's successfully gapped: 6
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mit... 613 e-175
Alignment gi|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, N... 553 e-157
Alignment gi|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mit... 447 e-138
Alignment gi|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mit... 434 e-121
Alignment gi|XP_850818.1| PREDICTED: similar to mitochondrial malate dehy... 319 e-104
Alignment gi|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mit... 267 1e-71
Alignment gi|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mit... 213 2e-55
Alignment gi|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [... 63 7e-10
Alignment gi|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B... 55 1e-07
Alignment gi|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B... 54 4e-07
>ref|XP_849944.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 338
Score = 613 bits (1580), Expect = e-175
Identities = 306/323 (94%), Positives = 315/323 (97%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
SFSTSAQNNAKVAVLGASGGIGQPL+LLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNA+IVATLTAACAQHCP+A
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEA 135
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
MIC+ISNPVNSTIPI EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGLDPARV+VP
Sbjct: 136 MICVISNPVNSTIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVP 195
Query: 718 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 897
VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 898 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1077
ARFVFSLVDAMNGKEGVVECSFVKSQE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315
Query: 1078 IAEAIPELKASIKKGEEFVKNMK 1146
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316 IAEAIPELKASIKKGEEFVKNMK 338
>ref|XP_539718.1| PREDICTED: similar to malate dehydrogenase 2, NAD (mitochondrial)
[Canis familiaris].
Length = 328
Score = 553 bits (1424), Expect = e-157
Identities = 282/323 (87%), Positives = 295/323 (91%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
S STSAQNNAKVAVLGASGGI Q +VS LTLYDIAHTP VAADLSHIETRA
Sbjct: 16 SVSTSAQNNAKVAVLGASGGIRQ----------IVSCLTLYDIAHTPRVAADLSHIETRA 65
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFN NA+IV TLTAACAQHCP+A
Sbjct: 66 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNINASIVDTLTAACAQHCPEA 125
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
+IC+ISNPVNSTIPI EVFKKHG Y+ NKIFGVTTLDIVRAN F AELKGLDPAR +VP
Sbjct: 126 VICVISNPVNSTIPIATEVFKKHGAYDSNKIFGVTTLDIVRANTFTAELKGLDPARANVP 185
Query: 718 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 897
VIGGHAGKTIIPLISQCTPKVD PQDQL+ +TG+IQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 186 VIGGHAGKTIIPLISQCTPKVDLPQDQLTAVTGQIQEAGTEVVKAKAGAGSATLSMAYAG 245
Query: 898 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1077
ARFVFSLVDA+NGKEG+VECSFVKSQ+TD YFSTPLLL KKGIEKNLGIGKISPFEEKM
Sbjct: 246 ARFVFSLVDAVNGKEGIVECSFVKSQDTDSDYFSTPLLLEKKGIEKNLGIGKISPFEEKM 305
Query: 1078 IAEAIPELKASIKKGEEFVKNMK 1146
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 306 IAEAIPELKASIKKGEEFVKNMK 328
>ref|XP_851105.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 369
Score = 447 bits (1150), Expect(2) = e-138
Identities = 220/250 (88%), Positives = 231/250 (92%)
Frame = +1
Query: 397 CLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTI 576
CLKGCD VV PAGVPRKPGMTRDDL +TNA+ VAT TAACAQHCP+A+IC+ISNPVNSTI
Sbjct: 120 CLKGCDAVVTPAGVPRKPGMTRDDLLSTNASAVATWTAACAQHCPEAIICVISNPVNSTI 179
Query: 577 PITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPL 756
PI EVFKKHG Y+P KIFG TTLDIVRAN F AELKGLDPARV+VPV GGHAGKTI+PL
Sbjct: 180 PIATEVFKKHGAYDPKKIFGATTLDIVRANTFTAELKGLDPARVNVPVTGGHAGKTIVPL 239
Query: 757 ISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNG 936
ISQCTPKVD PQD L+ +TGRIQEAGTEVVKAKA AGSATLSMAYAGARFVFSLVDAMNG
Sbjct: 240 ISQCTPKVDLPQDPLTAVTGRIQEAGTEVVKAKAAAGSATLSMAYAGARFVFSLVDAMNG 299
Query: 937 KEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 1116
KEGVVECSFVK+QE DC YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK
Sbjct: 300 KEGVVECSFVKAQEADCAYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK 359
Query: 1117 KGEEFVKNMK 1146
KGEEFVKNMK
Sbjct: 360 KGEEFVKNMK 369
Score = 63.2 bits (152), Expect(2) = e-138
Identities = 38/71 (53%), Positives = 43/71 (60%)
Frame = +3
Query: 195 PEQCQGSCAGGFRRNRAAPFASPEEQPLGEPPDPLRYRAHTRSGRGSEPHRDQSDCERLP 374
P SCA GFR N AAP A+ +EQPLG H RSGR SEPHRDQS+ ER P
Sbjct: 54 PRTSSSSCAWGFRGNWAAPCAASQEQPLGSRLSLWILLIH-RSGRRSEPHRDQSNRERPP 112
Query: 375 RT*AAARLPEG 407
+T AAA +G
Sbjct: 113 QTCAAAGCLKG 123
>ref|XP_849858.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 259
Score = 434 bits (1115), Expect = e-121
Identities = 220/271 (81%), Positives = 238/271 (87%)
Frame = +1
Query: 334 LSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAA 513
+SHIETRATVKG+LGPEQLPD LKGCD VV PAGVPRKPG+TRDDL +T A+
Sbjct: 1 MSHIETRATVKGHLGPEQLPDGLKGCDAVVTPAGVPRKPGVTRDDLLSTGAS-------- 52
Query: 514 CAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGL 693
HCP+A IC+ISNPVNSTIP+ EVFKKHG Y+PNKIFGVTTLDIVRAN F+AELKGL
Sbjct: 53 ---HCPEARICVISNPVNSTIPMATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGL 109
Query: 694 DPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA 873
DPARV+VPV GGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAG+EVVKAKA AGSA
Sbjct: 110 DPARVNVPVTGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGSEVVKAKAAAGSA 169
Query: 874 TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGK 1053
TLSMAYAGARFVFSLVDAMNGKEGV ECSFVKS+E DC YFSTPLLLGKKGIEKNLGIGK
Sbjct: 170 TLSMAYAGARFVFSLVDAMNGKEGVGECSFVKSREADCAYFSTPLLLGKKGIEKNLGIGK 229
Query: 1054 ISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1146
ISPFEE MIAEAI ELKASI+KGEEFVKNMK
Sbjct: 230 ISPFEE-MIAEAIAELKASIEKGEEFVKNMK 259
>ref|XP_850818.1| PREDICTED: similar to mitochondrial malate dehydrogenase precursor
[Canis familiaris].
Length = 278
Score = 319 bits (818), Expect(2) = e-104
Identities = 153/184 (83%), Positives = 170/184 (92%)
Frame = +1
Query: 325 AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATL 504
AADLSHIETRATVKG+LGP QLP CLKGCD VVIPAGVPRKPG+TRDDLF+T A++VAT
Sbjct: 40 AADLSHIETRATVKGHLGPAQLPGCLKGCDAVVIPAGVPRKPGVTRDDLFSTGASVVATR 99
Query: 505 TAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL 684
TAACAQHCP+AMIC+ISNPVNSTIP+ EVFKKHG Y+P+KIFGVTTLDIVRAN F+AEL
Sbjct: 100 TAACAQHCPEAMICVISNPVNSTIPMATEVFKKHGAYDPSKIFGVTTLDIVRANTFIAEL 159
Query: 685 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGA 864
KGLDPARV+VPVIGGHAGKTI+PL+SQ TPKVD PQD L+ + GRIQEAGTEV+KAKAGA
Sbjct: 160 KGLDPARVNVPVIGGHAGKTIVPLMSQRTPKVDLPQDPLTAVAGRIQEAGTEVLKAKAGA 219
Query: 865 GSAT 876
GSAT
Sbjct: 220 GSAT 223
Score = 79.0 bits (193), Expect(2) = e-104
Identities = 37/53 (69%), Positives = 41/53 (77%)
Frame = +2
Query: 881 PWHMPEPGLSSPSWMR*TGRKALSSVPLSSPRKRTVRISPRRCCWGKRASRKI 1039
PWH E GLSSP WM+ GRK LS+VPL SPRK+TV ISP CWGKRASR+I
Sbjct: 226 PWHTLELGLSSPLWMQRMGRKELSNVPLLSPRKQTVPISPHHYCWGKRASRRI 278
>ref|XP_852803.1| PREDICTED: similar to Malate dehydrogenase, mitochondrial precursor
[Canis familiaris].
Length = 245
Score = 267 bits (683), Expect = 1e-71
Identities = 146/221 (66%), Positives = 158/221 (71%), Gaps = 2/221 (0%)
Frame = +1
Query: 439 PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYN 618
PRKPGMTRDDLFNTNA++VAT TAACAQHCP+AMIC+ISNPVNSTIPI EVFKKHG Y+
Sbjct: 61 PRKPGMTRDDLFNTNASVVATPTAACAQHCPEAMICVISNPVNSTIPIATEVFKKHGAYD 120
Query: 619 PNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQ 798
PNKIF VTTLDIVRAN F+AEL G PA
Sbjct: 121 PNKIFRVTTLDIVRANTFIAELNG--PA-------------------------------- 146
Query: 799 LSTLTGRIQEAGTEVVKAKAGAGSATLSMAY--AGARFVFSLVDAMNGKEGVVECSFVKS 972
+TG IQEA TEV + + S + AGA+FVFSLVDAMNGKEG VECSFVKS
Sbjct: 147 ---ITGLIQEACTEVASFEGQSWSRLCHPVHGRAGAQFVFSLVDAMNGKEGDVECSFVKS 203
Query: 973 QETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 1095
QE DC YFSTPLLLG+KGIEKNLGIGKISPFEEKMIAEAIP
Sbjct: 204 QEADCAYFSTPLLLGEKGIEKNLGIGKISPFEEKMIAEAIP 244
>ref|XP_851705.1| PREDICTED: similar to malate dehydrogenase, mitochondrial [Canis
familiaris].
Length = 113
Score = 213 bits (543), Expect = 2e-55
Identities = 109/113 (96%), Positives = 110/113 (97%)
Frame = +1
Query: 808 LTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDC 987
+TGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQE DC
Sbjct: 1 MTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQEADC 60
Query: 988 PYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1146
YFSTPLLLGKK IEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 61 AYFSTPLLLGKKDIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 113
>ref|XP_534085.2| PREDICTED: similar to lactate dehydrogenase C [Canis familiaris].
Length = 420
Score = 62.8 bits (151), Expect = 7e-10
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 22/296 (7%)
Frame = +1
Query: 208 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETRATVKGYLGP 381
K+ ++G +G +G ++ + L L L D+A G DL H
Sbjct: 110 KITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKITSG 168
Query: 382 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 561
+ +V++ AG ++ G +R L N I+ ++ A QH PD + I+SNP
Sbjct: 169 KDY-SVSANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPAIVQHSPDCKMLIVSNP 227
Query: 562 VNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAG 738
V+ +T V+K G+ ++FG LD R + E G+ P +IG H G
Sbjct: 228 VDI---LTYVVWKLSGL-PATRVFGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIGEH-G 282
Query: 739 KTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSA--- 873
+ +PL + PK+ D +DQ + ++ E+ E++K K A
Sbjct: 283 DSSVPLWSGVNVAGVALKTLDPKLGTDADKDQWKNIHKQVVESAYEIIKLKGYTSWAIGL 342
Query: 874 ----TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1029
+ R V + + G G+ E F+ S P +LG+ G+
Sbjct: 343 SVTDLVGSVLKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGQNGV 388
>ref|XP_848921.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) isoform 2 [Canis familiaris].
Length = 223
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSH----IETRATV 363
N K+ V+G G +G ++ + L L L ++ G DL H ++T V
Sbjct: 20 NNKITVVGV-GQVGMACAISILGKSLADELALVNVLEDKLKGEMMDLQHGSLFLQTPKIV 78
Query: 364 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 543
P++ +VV+ AGV ++ G +R +L N + + ++ PD +I
Sbjct: 79 -----PDKDYSVTANSKIVVVTAGVHQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCII 133
Query: 544 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 723
++SNP++ +T +K G+ I LD R F+AE G+ P+ ++
Sbjct: 134 IVVSNPMDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYFMAEKFGIHPSSYHGWIL 190
Query: 724 GGHAGKTI 747
G H ++
Sbjct: 191 GEHGDSSV 198
>ref|XP_534868.1| PREDICTED: similar to L-lactate dehydrogenase B chain (LDH-B) (LDH
heart subunit) (LDH-H) [Canis familiaris].
Length = 334
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 736 GKTI 747
++
Sbjct: 196 DSSV 199
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,611,923
Number of extensions: 1553076
Number of successful extensions: 7055
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 7023
Number of HSP's successfully gapped: 20
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005909.2| malate dehydrogenase, mitochondrial precursor [... 612 e-175
Alignment gi|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens]. 58 2e-08
Alignment gi|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens]. 58 2e-08
Alignment gi|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens]. 54 3e-07
Alignment gi|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapien... 54 4e-07
Alignment gi|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens]. 54 4e-07
Alignment gi|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [H... 49 8e-06
Alignment gi|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo... 49 8e-06
>ref|NP_005909.2| malate dehydrogenase, mitochondrial precursor [Homo sapiens].
Length = 338
Score = 612 bits (1578), Expect = e-175
Identities = 305/323 (94%), Positives = 317/323 (98%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET+A
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKA 75
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 AVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
MIC+I+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136 MICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195
Query: 718 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 897
VIGGHAGKTIIPLISQCTPKVDFPQDQL+ LTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 898 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1077
ARFVFSLVDAMNGKEGVVECSFVKSQET+C YFSTPLLLGKKGIEKNLGIGK+S FEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKM 315
Query: 1078 IAEAIPELKASIKKGEEFVKNMK 1146
I++AIPELKASIKKGE+FVK +K
Sbjct: 316 ISDAIPELKASIKKGEDFVKTLK 338
>ref|NP_059144.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
Frame = +1
Query: 199 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 366
+ K+ ++G G+ +S+LLK+ L L L D+A G DL H +T K
Sbjct: 19 SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76
Query: 367 GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 546
G + +V++ AG ++ G TR L N I+ ++ A + PD I
Sbjct: 77 ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134
Query: 547 IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 726
++SNPV+ +T V+K G+ I LD R + E G+ P +IG
Sbjct: 135 VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191
Query: 727 GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 858
H G + +PL + PK+ D ++ + ++ ++ E++K K
Sbjct: 192 EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250
Query: 859 GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1029
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 251 AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300
Query: 1030 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1119
+ I S EE+ + + E +I+K
Sbjct: 301 SDVVKINLNS--EEEALFKKSAETLWNIQK 328
>ref|NP_002292.1| L-lactate dehydrogenase C chain [Homo sapiens].
Length = 332
Score = 57.8 bits (138), Expect = 2e-08
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 23/330 (6%)
Frame = +1
Query: 199 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSHIETR-ATVK 366
+ K+ ++G G+ +S+LLK+ L L L D+A G DL H +T K
Sbjct: 19 SQCKITIVGTGAVGMACAISILLKD--LADELALVDVALDKLKGEMMDLQHGSLFFSTSK 76
Query: 367 GYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 546
G + +V++ AG ++ G TR L N I+ ++ A + PD I
Sbjct: 77 ITSGKDYSVSA--NSRIVIVTAGARQQEGETRLALVQRNVAIMKSIIPAIVHYSPDCKIL 134
Query: 547 IISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIG 726
++SNPV+ +T V+K G+ I LD R + E G+ P +IG
Sbjct: 135 VVSNPVDI---LTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGVHPTSCHGWIIG 191
Query: 727 GHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA---- 858
H G + +PL + PK+ D ++ + ++ ++ E++K K
Sbjct: 192 EH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYEIIKLKGYTSW 250
Query: 859 GAGSATLSMA---YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1029
G + + + R V + + G G+ E F+ S P +LG+ G+
Sbjct: 251 AIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFL----------SIPCVLGRNGV 300
Query: 1030 EKNLGIGKISPFEEKMIAEAIPELKASIKK 1119
+ I S EE+ + + E +I+K
Sbjct: 301 SDVVKINLNS--EEEALFKKSAETLWNIQK 328
>ref|NP_149972.1| L-lactate dehydrogenase A-like 6B [Homo sapiens].
Length = 381
Score = 53.9 bits (128), Expect = 3e-07
Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 20/326 (6%)
Frame = +1
Query: 199 NNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKG 369
+++KV+++G S G+ +S+LLK L L L D+ G DL H +
Sbjct: 68 HHSKVSIIGTGSVGMACAISILLKG--LSDELALVDLDEDKLKGETMDLQHGSPFTKMPN 125
Query: 370 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 549
+ + ++V+I AG ++ G TR +L N I + ++ Q+ P + I
Sbjct: 126 IVCSKDY-FVTANSNLVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLII 184
Query: 550 ISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIG 726
+SNPV+ I V K + N+I G LD R + + G+ ++G
Sbjct: 185 VSNPVD----ILTYVAWKLSAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILG 240
Query: 727 GHAGKTIIPLISQC----TPKVDFPQD--------QLSTLTGRIQEAGTEVVKAKAGAGS 870
H G + +P+ S P D D Q + + E++K K G S
Sbjct: 241 EH-GDSSVPVWSGVNIAGVPLKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMK-GYTS 298
Query: 871 ATLSMAYAG-ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGI 1047
+ ++ A + + ++ +++ + +E + S P +LG+ GI + I
Sbjct: 299 WAIGLSVADLTESILKNLRRIHPVSTIIKGLYGIDEEV---FLSIPCILGENGITNLIKI 355
Query: 1048 GKISPFEE---KMIAEAIPELKASIK 1116
K++P EE K A+ + E++ +K
Sbjct: 356 -KLTPEEEAHLKKSAKTLWEIQNKLK 380
>ref|NP_001167568.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 736 GKTI 747
++
Sbjct: 196 DSSV 199
>ref|NP_002291.1| L-lactate dehydrogenase B chain [Homo sapiens].
Length = 334
Score = 53.5 bits (127), Expect = 4e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHG 195
Query: 736 GKTI 747
++
Sbjct: 196 DSSV 199
>ref|NP_001158886.1| L-lactate dehydrogenase A chain isoform 3 [Homo sapiens].
Length = 361
Score = 49.3 bits (116), Expect = 8e-06
Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 27/317 (8%)
Frame = +1
Query: 208 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSH----IETRATVKG 369
K+ V+G G +G ++ + L L L D+ G DL H + T V G
Sbjct: 51 KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSG 109
Query: 370 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 549
+ + +V+I AG ++ G +R +L N I + ++ P+ + I
Sbjct: 110 -----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLI 164
Query: 550 ISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIG 726
+SNPV+ I V K + N++ G LD R + E G+ P V+G
Sbjct: 165 VSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 220
Query: 727 GHAGKTIIPLISQCTPK------------VDFPQDQLSTLTGRIQEAGTEVVKAKAGAGS 870
H G + +P+ S D ++Q + ++ E+ EV+K K G S
Sbjct: 221 EH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK-GYTS 278
Query: 871 ATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKG 1026
+ ++ A R V + + G G+ D + S P +LG+ G
Sbjct: 279 WAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGI----------KDDVFLSVPCILGQNG 328
Query: 1027 IEKNLGIGKISPFEEKM 1077
I + + S E ++
Sbjct: 329 ISDLVKVTLTSEEEARL 345
>ref|NP_005557.1| L-lactate dehydrogenase A chain isoform 1 [Homo sapiens].
Length = 332
Score = 49.3 bits (116), Expect = 8e-06
Identities = 71/317 (22%), Positives = 123/317 (38%), Gaps = 27/317 (8%)
Frame = +1
Query: 208 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSH----IETRATVKG 369
K+ V+G G +G ++ + L L L D+ G DL H + T V G
Sbjct: 22 KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSG 80
Query: 370 YLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICI 549
+ + +V+I AG ++ G +R +L N I + ++ P+ + I
Sbjct: 81 -----KDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLI 135
Query: 550 ISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIG 726
+SNPV+ I V K + N++ G LD R + E G+ P V+G
Sbjct: 136 VSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 191
Query: 727 GHAGKTIIPLISQCTPK------------VDFPQDQLSTLTGRIQEAGTEVVKAKAGAGS 870
H G + +P+ S D ++Q + ++ E+ EV+K K G S
Sbjct: 192 EH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK-GYTS 249
Query: 871 ATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKG 1026
+ ++ A R V + + G G+ D + S P +LG+ G
Sbjct: 250 WAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGI----------KDDVFLSVPCILGQNG 299
Query: 1027 IEKNLGIGKISPFEEKM 1077
I + + S E ++
Sbjct: 300 ISDLVKVTLTSEEEARL 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,406,846
Number of extensions: 1510990
Number of successful extensions: 6574
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6562
Number of HSP's successfully gapped: 8
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032643.2| malate dehydrogenase, mitochondrial precursor [... 619 e-177
Alignment gi|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus]. 57 4e-08
Alignment gi|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus]. 53 5e-07
Alignment gi|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like... 50 3e-06
>ref|NP_032643.2| malate dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 338
Score = 619 bits (1597), Expect = e-177
Identities = 309/323 (95%), Positives = 320/323 (99%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP+A
Sbjct: 76 NVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEA 135
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
M+CII+NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRAN FVAELKGLDPARV+VP
Sbjct: 136 MVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVP 195
Query: 718 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 897
VIGGHAGKTIIPLISQCTPKVDFPQDQL+TLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 898 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1077
ARFVFSLVDAMNGKEGVVECSFV+S+ET+C YFSTPLLLGKKG+EKNLGIGKI+PFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKM 315
Query: 1078 IAEAIPELKASIKKGEEFVKNMK 1146
IAEAIPELKASIKKGE+FVKNMK
Sbjct: 316 IAEAIPELKASIKKGEDFVKNMK 338
>ref|NP_038608.1| L-lactate dehydrogenase C chain [Mus musculus].
Length = 332
Score = 56.6 bits (135), Expect = 4e-08
Identities = 73/298 (24%), Positives = 117/298 (39%), Gaps = 21/298 (7%)
Frame = +1
Query: 199 NNAKVAVLGASG-GIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGY 372
+ K+ V+G G+ +S+LLK L D G A DL H +T K
Sbjct: 19 SRCKITVVGVGNVGMACAISILLKGLADELALVDADTNKLRGEALDLLHGSLFLSTPKIV 78
Query: 373 LGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 552
G + + +V+I AG G TR DL N I+ + Q+ PD I I+
Sbjct: 79 FGKDY--NVSANSKLVIITAGARMVSGETRLDLLQRNVAIMKAIVPGIVQNSPDCKIIIV 136
Query: 553 SNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGH 732
+NPV+ +T V+K G I LD R + E G++P V+G H
Sbjct: 137 TNPVDI---LTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH 193
Query: 733 AGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKA----GA 864
G + +P+ + P + D ++ + ++ E G EV+ K
Sbjct: 194 -GDSSVPIWSGVNVAGVTLKSLNPAIGTDSDKEHWKNVHKQVVEGGYEVLNMKGYTSWAI 252
Query: 865 GSATLSMAYA---GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGI 1029
G + +A + + V + + G G+ E F+ S P +LG+ GI
Sbjct: 253 GLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFL----------SIPCVLGQSGI 300
>ref|NP_032518.1| L-lactate dehydrogenase B chain [Mus musculus].
Length = 334
Score = 53.1 bits (126), Expect = 5e-07
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 2/188 (1%)
Frame = +1
Query: 190 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 363
+A N K+ V+G G +G ++ + L L L D+ G DL H
Sbjct: 17 AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQT 75
Query: 364 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 543
+ + +VV+ AGV ++ G +R +L N + + ++ PD I
Sbjct: 76 PKIVADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134
Query: 544 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 723
++SNPV+ +T +K G+ I LD R +AE G+ P+ ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191
Query: 724 GGHAGKTI 747
G H ++
Sbjct: 192 GEHGDSSV 199
>ref|XP_904967.1| PREDICTED: l-lactate dehydrogenase B chain-like isoform 7 [Mus
musculus].
Length = 334
Score = 50.4 bits (119), Expect = 3e-06
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 2/188 (1%)
Frame = +1
Query: 190 SAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATV 363
+A N K+ V+G G +G ++ + L L L D+ DL H
Sbjct: 17 AAVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKEEMMDLQHGSLFLQT 75
Query: 364 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI 543
+ + +VV+ AGV ++ G +R +L N + + ++ PD I
Sbjct: 76 PKIVADKDY-SVTANSKIVVVSAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCTI 134
Query: 544 CIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVI 723
++SNPV+ +T +K G+ I LD R +AE G+ P+ ++
Sbjct: 135 IVVSNPVDI---LTYVTWKLRGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWIL 191
Query: 724 GGHAGKTI 747
G H ++
Sbjct: 192 GEHGDSSV 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,937,353
Number of extensions: 1248431
Number of successful extensions: 5274
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5262
Number of HSP's successfully gapped: 4
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondri... 639 0.0
Alignment gi|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondri... 587 e-168
Alignment gi|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa]. 59 8e-09
Alignment gi|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 55 1e-07
Alignment gi|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B... 55 1e-07
Alignment gi|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa]. 53 3e-07
Alignment gi|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-l... 53 3e-07
Alignment gi|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B... 50 2e-06
>ref|XP_003354540.1| PREDICTED: malate dehydrogenase, mitochondrial [Sus scrofa].
Length = 338
Score = 639 bits (1648), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 16 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 75
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 76 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 135
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 136 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 195
Query: 718 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 897
VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG
Sbjct: 196 VIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAG 255
Query: 898 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 1077
ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM
Sbjct: 256 ARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKM 315
Query: 1078 IAEAIPELKASIKKGEEFVKNMK 1146
IAEAIPELKASIKKGEEFVKNMK
Sbjct: 316 IAEAIPELKASIKKGEEFVKNMK 338
>ref|XP_003361319.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Sus scrofa].
Length = 418
Score = 587 bits (1513), Expect = e-168
Identities = 305/335 (91%), Positives = 306/335 (91%), Gaps = 12/335 (3%)
Frame = +1
Query: 178 SFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 357
+FSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA
Sbjct: 84 AFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA 143
Query: 358 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 537
TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA
Sbjct: 144 TVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDA 203
Query: 538 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 717
MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP
Sbjct: 204 MICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVP 263
Query: 718 VIG-------GHAGKTIIPLIS-----QCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 861
VIG GH G P CTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG
Sbjct: 264 VIGVVKGPLDGHVGLWSGPAFQGSTPMGCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAG 323
Query: 862 AGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL 1041
AGSATLSMAYAGARFVFSLVDAMNGKEGVVEC DCPYFSTPLLLGKKGIEKNL
Sbjct: 324 AGSATLSMAYAGARFVFSLVDAMNGKEGVVECXXXXXXXXDCPYFSTPLLLGKKGIEKNL 383
Query: 1042 GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 1146
GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK
Sbjct: 384 GIGKISPFEEKMIAEAIPELKASIKKGEEFVKNMK 418
>ref|NP_001182704.1| L-lactate dehydrogenase C chain [Sus scrofa].
Length = 332
Score = 58.5 bits (140), Expect = 8e-09
Identities = 68/302 (22%), Positives = 118/302 (39%), Gaps = 25/302 (8%)
Frame = +1
Query: 199 NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA--HTPGVAADLSH----IETRAT 360
+ +K+ ++G +G +G ++ + L L L D+A G DL H T
Sbjct: 19 SQSKITIVG-TGAVGMACAICILLKDLADELALVDVAVDKLKGETMDLQHGSLFFNTSKI 77
Query: 361 VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAM 540
V G + +V++ AG ++ G +R L N I+ ++ QH PD
Sbjct: 78 VSG-----KDYSVSANSKIVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVQHSPDCK 132
Query: 541 ICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPV 720
+ I+SNPV+ +T +K G+ I LD R + + G+ P +
Sbjct: 133 MLIVSNPVDI---LTYVAWKLSGLPATRVIGSGCNLDSARFRYLIGKKLGVHPTSCHGWI 189
Query: 721 IGGHAGKTIIPL----------ISQCTPKV--DFPQDQLSTLTGRIQEAGTEVVKAKAGA 864
IG H G + +PL + PK+ D +DQ + ++ + E++K K
Sbjct: 190 IGEH-GDSSVPLWSGVNVAGVALKTLDPKLGTDSDKDQWKNIHKQVIGSAYEIIKLKGYT 248
Query: 865 GSA-------TLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKK 1023
A + R V + + G G+ E F+ S P +LG+
Sbjct: 249 SWAIGLSVTDLVGSILKNLRRVHPVSTMVKGLYGIKEEIFL----------SIPCVLGRN 298
Query: 1024 GI 1029
G+
Sbjct: 299 GV 300
>ref|XP_003353222.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 54.7 bits (130), Expect = 1e-07
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
Frame = +1
Query: 184 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 342
S ++ K++++G S G+ +S+LLK L L L D+ + G DL H
Sbjct: 63 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120
Query: 343 --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 516
+ + K YL ++V+I AG ++ G TR +L N TI + ++
Sbjct: 121 VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173
Query: 517 AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 693
Q+ P + ++SNPV+ I V K + N+I G LD R + + G+
Sbjct: 174 VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229
Query: 694 DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 840
++G H ++ +PL + D +Q + + + E
Sbjct: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289
Query: 841 VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 996
++K K G S + ++ A R V + + G G+ E F+
Sbjct: 290 IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338
Query: 997 STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1116
S P +LG+ GI + + K++P EE + A+ + E++ +K
Sbjct: 339 SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380
>ref|XP_001926443.2| PREDICTED: l-lactate dehydrogenase A-like 6B-like [Sus scrofa].
Length = 381
Score = 54.7 bits (130), Expect = 1e-07
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
Frame = +1
Query: 184 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDI--AHTPGVAADLSH---- 342
S ++ K++++G S G+ +S+LLK L L L D+ + G DL H
Sbjct: 63 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETMDLQHGSPF 120
Query: 343 --IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC 516
+ + K YL ++V+I AG ++ G TR +L N TI + ++
Sbjct: 121 VKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMISSI 173
Query: 517 AQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGL 693
Q+ P + ++SNPV+ I V K + N+I G LD R + + G+
Sbjct: 174 VQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRLGI 229
Query: 694 DPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAGTE 840
++G H ++ +PL + D +Q + + + E
Sbjct: 230 HSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASAYE 289
Query: 841 VVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 996
++K K G S + ++ A R V + + G G+ E F+
Sbjct: 290 IIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL---------- 338
Query: 997 STPLLLGKKGIEKNLGIGKISPFEEKMI---AEAIPELKASIK 1116
S P +LG+ GI + + K++P EE + A+ + E++ +K
Sbjct: 339 SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTLWEIQKELK 380
>ref|NP_001106758.1| L-lactate dehydrogenase B chain [Sus scrofa].
Length = 334
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 21 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 79
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 80 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 138
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 139 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 195
Query: 736 GKTI 747
++
Sbjct: 196 DSSV 199
>ref|XP_003355600.1| PREDICTED: l-lactate dehydrogenase B chain-like [Sus scrofa].
Length = 428
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Frame = +1
Query: 202 NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYL 375
N K+ V+G G +G ++ + L L L D+ G DL H +
Sbjct: 114 NNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV 172
Query: 376 GPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 555
+ +VV+ AGV ++ G +R +L N + + ++ PD +I ++S
Sbjct: 173 ADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 231
Query: 556 NPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHA 735
NPV+ +T +K G+ I LD R +AE G+ P+ ++G H
Sbjct: 232 NPVDI---LTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHG 288
Query: 736 GKTI 747
++
Sbjct: 289 DSSV 292
>ref|XP_003361852.1| PREDICTED: l-lactate dehydrogenase A-like 6B-like, partial [Sus
scrofa].
Length = 328
Score = 50.4 bits (119), Expect = 2e-06
Identities = 75/337 (22%), Positives = 135/337 (40%), Gaps = 31/337 (9%)
Frame = +1
Query: 184 STSAQNNAKVAVLGA-SGGIGQPLSLLLKNSPLVSRLTLYDIAHT----PGVAADLSH-- 342
S ++ K++++G S G+ +S+LLK L L L D+ + DL H
Sbjct: 14 SEEVVHSNKISIVGTGSVGMACAISILLKG--LTDELALVDVDESRLKGETXTMDLQHGS 71
Query: 343 ----IETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTA 510
+ + K YL ++V+I AG ++ G TR +L N TI + +
Sbjct: 72 PFVKMPNIVSSKDYL-------ITANSNLVIITAGARQEKGETRLNLVQRNVTIFKLMIS 124
Query: 511 ACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELK 687
+ Q+ P + ++SNPV+ I V K + N+I G LD R + +
Sbjct: 125 SIVQYSPRCKLIVVSNPVD----ILTYVAWKLSEFPQNRIIGSGCNLDTARFRFLIGQRL 180
Query: 688 GLDPARVSVPVIGGHAGKTI----------IPLIS-QCTPKVDFPQDQLSTLTGRIQEAG 834
G+ ++G H ++ +PL + D +Q + + +
Sbjct: 181 GIHSESCHGWILGEHGDSSVPVWSGVNIAGVPLKNLNLDIGTDKDPEQWKNVHKDVVASA 240
Query: 835 TEVVKAKAGAGSATLSMAYA--------GARFVFSLVDAMNGKEGVVECSFVKSQETDCP 990
E++K K G S + ++ A R V + + G G+ E F+
Sbjct: 241 YEIIKMK-GYTSWAIGLSVADLTESILKNLRRVHPVSTRIKGLYGINEEVFL-------- 291
Query: 991 YFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPEL 1101
S P +LG+ GI + + K++P EE + ++ L
Sbjct: 292 --SVPCILGESGITDLIKV-KLTPEEEAYLQKSAKTL 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,743,243
Number of extensions: 968222
Number of successful extensions: 4508
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4503
Number of HSP's successfully gapped: 8
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002094
(1301 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904 418 e-114
Sscrofa_Chr03 418 e-114
Sscrofa_Chr09 174 8e-41
Sscrofa_Chr05 74 2e-10
>gb|GL894019.2| Sus scrofa unplaced genomic scaffold ChrUScaf1904
Length = 181737
Score = 418 bits (211), Expect = e-114
Identities = 270/287 (94%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 1017 gaaaaagggcatcgagaaaaatctaggcatcggcaaaatctccccttttgaagaaaagat 1076
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 137054 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 137113
Query: 1077 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137114 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 137173
Query: 1137 aaacatgaaatgaacaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1196
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137174 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 137233
Query: 1197 tggcccggtaaagccatttcaaacccctccggcccctccctttgcttgggtgaagaatgt 1256
|| | | |||||||||||||| ||||||| | | ||||||||||||| ||||| || |||
Sbjct: 137234 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 137293
Query: 1257 cctgttta-aaagcaccccttcc-aatcttggggcatctctcggtgc 1301
|||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct: 137294 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgc 137340
Score = 325 bits (164), Expect = 3e-86
Identities = 170/172 (98%)
Strand = Plus / Plus
Query: 197 agaacaatgccaaggtagctgtgctgggggcttccggaggaatcgggcagcccctttcgc 256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 128492 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 128551
Query: 257 ttctcctgaagaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 316
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128552 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 128611
Query: 317 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128612 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 128663
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 561 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131738 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 131797
Query: 621 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131798 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 131857
Query: 681 gctgaagg 688
||||||||
Sbjct: 131858 gctgaagg 131865
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 449 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130471 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 130530
Query: 509 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130531 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 130585
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 763 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135404 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 135463
Query: 823 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 866
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135464 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 135507
Score = 180 bits (91), Expect = 1e-42
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 864 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135819 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 135878
Query: 924 tgcgatgaacgggaaggaaggcgttgtcgagtgtt 958
||| |||||||||||||||||||||||||||||||
Sbjct: 135879 tgcaatgaacgggaaggaaggcgttgtcgagtgtt 135913
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 366 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129931 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 129990
Query: 426 tccagccggagtcccaagaaagccagg 452
|||||||||||||||||||||||||||
Sbjct: 129991 tccagccggagtcccaagaaagccagg 130017
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 686 agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 732
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134229 agggtttggacccggctcgagtcagcgttcccgtcattggcggccac 134275
Score = 65.9 bits (33), Expect = 5e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 981 ggactgtccgtatttctccacgccgttgctgctgggg 1017
|||||||||||||||||||||||| ||||||||||||
Sbjct: 136014 ggactgtccgtatttctccacgccattgctgctgggg 136050
>Sscrofa_Chr03
|| Length = 144787322
Score = 418 bits (211), Expect = e-114
Identities = 270/287 (94%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1017 gaaaaagggcatcgagaaaaatctaggcatcggcaaaatctccccttttgaagaaaagat 1076
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 9954418 gaaaaagggcatcgagaagaatctaggcatcggcaaaatctccccttttgaagagaagat 9954359
Query: 1077 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954358 gatcgccgaggccattcctgagctgaaagcctccatcaagaaaggagaggagtttgtcaa 9954299
Query: 1137 aaacatgaaatgaacaggcggttggcgagcagtccgcttccttaacttattcgggcatca 1196
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9954298 gaacatgaaatgagcaggcggttggcgagcagtccgcttccttaacttattcgggcatca 9954239
Query: 1197 tggcccggtaaagccatttcaaacccctccggcccctccctttgcttgggtgaagaatgt 1256
|| | | |||||||||||||| ||||||| | | ||||||||||||| ||||| || |||
Sbjct: 9954238 tgtcactgtaaagccatttcagacccctctgtctcctccctttgctttggtgatgagtgt 9954179
Query: 1257 cctgttta-aaagcaccccttcc-aatcttggggcatctctcggtgc 1301
|||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct: 9954178 cctgtttacaaagcaccccttccaaatctcggggcatctctcggtgc 9954132
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 2 ggaagtcgggccagtctcgcgagacctggcggagcggagccgggagggcctgtggagtgt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965944 ggaagtcgggccagtctcgcgagacctggcggagcggagccgggagggcctgtggagtgt 9965885
Query: 62 ggaggtcgttggagtcactttcttgctgccagctcgtttgccggccggtcctctccccgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965884 ggaggtcgttggagtcactttcttgctgccagctcgtttgccggccggtcctctccccgc 9965825
Query: 122 acgccccagccatgctctccgccctcgcccggcctgccggcgccgctctccgccgcagct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965824 acgccccagccatgctctccgccctcgcccggcctgccggcgccgctctccgccgcagct 9965765
Query: 182 tcagcacctcggcccag 198
|||||||||||||||||
Sbjct: 9965764 tcagcacctcggcccag 9965748
Score = 325 bits (164), Expect = 3e-86
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 197 agaacaatgccaaggtagctgtgctgggggcttccggaggaatcgggcagcccctttcgc 256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962198 agaacaatgccaaggtagccgtgctgggggcttccggaggaatcgggcagcccctttcgc 9962139
Query: 257 ttctcctgaagaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 316
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962138 ttctcctgaaaaacagccccttggtgagccgcctgaccctctacgatatcgcgcacacac 9962079
Query: 317 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 368
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9962078 ccggagtggccgcggatctgagccacatcgagaccagagcgactgtgaaagg 9962027
Score = 289 bits (146), Expect = 2e-75
Identities = 152/154 (98%)
Strand = Plus / Minus
Query: 864 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955311 aggctctgccaccctgtccatggcatatgccggagcccggtttgtcttctccctcgtgga 9955252
Query: 924 tgcgatgaacgggaaggaaggcgttgtcgagtgttcctttgtcaagtcccaggaaacgga 983
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955251 tgcaatgaacgggaaggaaggcgttgtcgagtgttcctttgtcaagtcccaggaaacgga 9955192
Query: 984 ctgtccgtatttctccacgccgttgctgctgggg 1017
||||||||||||||||||||| ||||||||||||
Sbjct: 9955191 ctgtccgtatttctccacgccattgctgctgggg 9955158
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 561 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958941 ggttaactccaccatcccaatcacggcggaggtcttcaagaaacacggcgtgtacaaccc 9958882
Query: 621 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9958881 caataaaatcttcggggtgacgaccctggacattgtccgagccaacgcttttgttgcaga 9958822
Query: 681 gctgaagg 688
||||||||
Sbjct: 9958821 gctgaagg 9958814
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 449 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960130 caggcatgacacgggatgacctgttcaacaccaacgccaccatcgtggccaccctgacgg 9960071
Query: 509 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960070 ctgcctgcgcccagcactgccccgacgccatgatctgcatcatttccaacccggt 9960016
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 763 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955682 cagtgcaccccgaaggtggactttccgcaggaccagctctccaccctcaccgggcgcatc 9955623
Query: 823 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 866
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9955622 caggaggccggcaccgaggtggtcaaggctaaggccggagcagg 9955579
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 366 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960674 aggctacctcggacctgagcagctgccagactgcctgaagggctgcgatgtggtggttat 9960615
Query: 426 tccagccggagtcccaagaaagccagg 452
|||||||||||||||||||||||||||
Sbjct: 9960614 tccagccggagtcccaagaaagccagg 9960588
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 686 agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9956740 agggtttggacccggctcgagtcagcgttcccgtcattggcggccacgccgggaagacca 9956681
Query: 746 tcatcccgctcatctctcag 765
||||||||||||||||||||
Sbjct: 9956680 tcatcccgctcatctctcag 9956661
>Sscrofa_Chr09
|| Length = 153670197
Score = 174 bits (88), Expect = 8e-41
Identities = 118/128 (92%)
Strand = Plus / Minus
Query: 23 agacctggcggagcggagccgggagggcctgtggagtgtggaggtcgttggagtcacttt 82
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 144783373 agacctggcggaggggagccgggagggcctgtgcagggtggaggtcgttggagtcacttt 144783314
Query: 83 cttgctgccagctcgtttgccggccggtcctctccccgcacgccccagccatgctctccg 142
| ||||||||| | |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 144783313 cctgctgccagggcctttgccggccggtctgctccccgcacaccccagccatgctctccg 144783254
Query: 143 ccctcgcc 150
||||||||
Sbjct: 144783253 ccctcgcc 144783246
>Sscrofa_Chr05
|| Length = 111506441
Score = 73.8 bits (37), Expect = 2e-10
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 1048 ggcaaaatctccccttttgaagaaaagatgatcgccgaggccattcctgagctgaaagcc 1107
|||||||||| | |||||||||| |||||||| || ||| ||||||||| ||||||||
Sbjct: 54122569 ggcaaaatcttctcttttgaagagaagatgataaccaaggtcattcctgacctgaaagct 54122628
Query: 1108 tccatcaagaaaggagaggagtttgtcaaaaacatga 1144
|| ||||||||||||| ||||||| || |||||||
Sbjct: 54122629 tcagtcaagaaaggagaaaagtttgtaaagaacatga 54122665
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,066,483
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 20
Length of query: 1301
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1280
Effective length of database: 2,808,413,156
Effective search space: 3594768839680
Effective search space used: 3594768839680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)