Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]. 501 e-160
Alignment gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru... 228 3e-74
Alignment gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru... 221 6e-73
Alignment gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau... 218 9e-71
Alignment gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur... 206 8e-65
Alignment gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur... 202 1e-61
Alignment gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2... 193 5e-59
Alignment gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like... 135 6e-40
Alignment gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus]. 126 5e-39
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 131 1e-38
>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
Length = 406
Score = 501 bits (1289), Expect(2) = e-160
Identities = 260/287 (90%), Positives = 260/287 (90%)
Frame = +2
Query: 65 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 244
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 245 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 424
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 425 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 604
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 605 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 784
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 785 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Score = 83.2 bits (204), Expect(2) = e-160
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 287 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 337
>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
Length = 440
Score = 228 bits (580), Expect(3) = 3e-74
Identities = 107/176 (60%), Positives = 139/176 (78%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 52.8 bits (125), Expect(3) = 3e-74
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
Score = 38.9 bits (89), Expect(3) = 3e-74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGL 404
>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
Length = 433
Score = 221 bits (563), Expect(3) = 6e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 290 GGDNEVQRTMLELINQLDGFD 310
Score = 52.4 bits (124), Expect(3) = 6e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
Score = 41.6 bits (96), Expect(3) = 6e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 343 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
Length = 389
Score = 218 bits (556), Expect(3) = 9e-71
Identities = 113/243 (46%), Positives = 153/243 (62%)
Frame = +2
Query: 188 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 367
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 26 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 85
Query: 368 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 547
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 86 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 145
Query: 548 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 727
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 146 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 205
Query: 728 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 907
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 265
Query: 908 GFE 916
GF+
Sbjct: 266 GFD 268
Score = 47.0 bits (110), Expect(3) = 9e-71
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
+K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 273 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 307
Score = 42.4 bits (98), Expect(3) = 9e-71
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P+E+ARLDILKIH G I+ +L +GA++ VCTE GM
Sbjct: 304 PNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGM 352
>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
Length = 418
Score = 206 bits (523), Expect(2) = 8e-65
Identities = 110/280 (39%), Positives = 165/280 (58%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300
Score = 60.8 bits (146), Expect(2) = 8e-65
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 353
>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
Length = 440
Score = 202 bits (513), Expect(2) = 1e-61
Identities = 100/175 (57%), Positives = 127/175 (72%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 148 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 207
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 208 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 267
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+
Sbjct: 268 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQ 322
Score = 53.9 bits (128), Expect(2) = 1e-61
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
+KVI ATNR+DILD ALLR GR+DRKI+F P + SRKMN
Sbjct: 327 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 375
>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
[Bos taurus].
Length = 456
Score = 193 bits (491), Expect(2) = 5e-59
Identities = 100/191 (52%), Positives = 128/191 (67%), Gaps = 16/191 (8%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEV----- 556
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E++E
Sbjct: 148 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQEVREARHLTS 207
Query: 557 -----------IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 703
I LP+ H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++
Sbjct: 208 LLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLK 267
Query: 704 VSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTM 883
++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTM
Sbjct: 268 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTM 327
Query: 884 LELLNQLDGFE 916
LELLNQLDGF+
Sbjct: 328 LELLNQLDGFQ 338
Score = 53.9 bits (128), Expect(2) = 5e-59
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
+KVI ATNR+DILD ALLR GR+DRKI+F P + SRKMN
Sbjct: 343 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 391
>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
Length = 1004
Score = 135 bits (340), Expect(3) = 6e-40
Identities = 67/159 (42%), Positives = 99/159 (62%)
Frame = +2
Query: 449 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 628
N + P + VP+ ++ IGGL+ ++K+ +E P+KHPE F +GI PKGVLL
Sbjct: 718 NDIRPSAMREVAVDVPNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLL 777
Query: 629 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 808
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 778 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 837
Query: 809 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
DE+D++ R SG + R + +LL ++DG E K
Sbjct: 838 DELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLK 875
Score = 40.8 bits (94), Expect(3) = 6e-40
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKI 1008
KN+ ++ ATNR D +D AL+RPGRIDR I
Sbjct: 875 KNVTILAATNRPDRIDKALMRPGRIDRII 903
Score = 27.7 bits (60), Expect(3) = 6e-40
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P P R +IL + F + ++L + SGAE+ VC E +
Sbjct: 906 PLPDAATRREILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVCREAAL 956
Score = 134 bits (338), Expect(3) = 1e-36
Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 1/137 (0%)
Frame = +2
Query: 503 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 682
TY+MIGGL+ Q+KEI+E+IELP+K PELF++ GI P+GVLLYGPPGTGKT++ARAVA+
Sbjct: 462 TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANE 521
Query: 683 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 862
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 522 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 577
Query: 863 SEVQ-RTMLELLNQLDG 910
+EV+ R + LL +DG
Sbjct: 578 NEVEKRVVASLLTLMDG 594
Score = 34.3 bits (77), Expect(3) = 1e-36
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
+ V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 604 VLVLGATNRPHALDAALRRPGRFDKEIEIGVP 635
Score = 24.3 bits (51), Expect(3) = 1e-36
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXAS------GAEVKGVCTETGM 1166
P+ + RLDIL+ L +L AEL+ A+ GA++K +C E G+
Sbjct: 635 PNAQDRLDILQ-----KLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGL 684
>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
Length = 805
Score = 126 bits (317), Expect(3) = 5e-39
Identities = 63/139 (45%), Positives = 93/139 (66%)
Frame = +2
Query: 497 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 676
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 363
Query: 677 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 856
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G G
Sbjct: 364 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 423
Query: 857 GDSEVQRTMLELLNQLDGF 913
G SE + T+ +LL ++DGF
Sbjct: 424 GQSEQENTLNQLLVEMDGF 442
Score = 43.5 bits (101), Expect(3) = 5e-39
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
N+ ++ TNR DILD AL+RPGR DR+I PP
Sbjct: 447 NVVILAGTNRPDILDPALMRPGRFDRQIFIGPP 479
Score = 30.8 bits (68), Expect(3) = 5e-39
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGIN----LRKNAELMPXASGAEVKGVCTETGM 1166
P + R I K+H +L + RK A L P SGA+V VC E +
Sbjct: 479 PDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNEAAL 531
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 128 bits (322), Expect(3) = 1e-38
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Frame = +2
Query: 482 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 661
V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 662 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 841
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR- 586
Query: 842 EGGSGGD--SEVQRTMLELLNQLDGFEAPK 925
GG+ GD R + ++L ++DG K
Sbjct: 587 -GGNIGDGGGAADRVINQILTEMDGMSTKK 615
Score = 40.8 bits (94), Expect(3) = 1e-38
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
KN+ +I ATNR DI+D A+LRPGR+D+ I P +
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Score = 30.4 bits (67), Expect(3) = 1e-38
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVC 1151
P P E++R+ ILK + K+ + ++L A++ SGA++ +C
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 131 bits (330), Expect(3) = 2e-36
Identities = 65/144 (45%), Positives = 101/144 (70%)
Frame = +2
Query: 485 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 664
E + + Y+ IGG KQ+ +IKE++ELP++HP LF+A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 665 RAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLE 844
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R +
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 845 GGSGGDSEVQRTMLELLNQLDGFE 916
+ G+ E +R + +LL +DG +
Sbjct: 316 --THGEVE-RRIVSQLLTLMDGLK 336
Score = 31.6 bits (70), Expect(3) = 2e-36
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 910 LRGPKNIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
L+ ++ V+ ATNR + +D AL R GR DR++D P
Sbjct: 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Score = 29.3 bits (64), Expect(3) = 2e-36
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P RL+IL+IH +L ++L + A GA++ +C+E +
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,765,522
Number of extensions: 1255742
Number of successful extensions: 4436
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 4412
Number of HSP's successfully gapped: 110
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S... 501 e-160
Alignment gi|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (S... 380 e-124
Alignment gi|XP_533103.2| PREDICTED: similar to proteasome (prosome, macr... 221 6e-73
Alignment gi|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase sub... 218 3e-71
Alignment gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro... 214 2e-70
Alignment gi|XP_856279.1| PREDICTED: similar to peptidase (prosome, macro... 199 8e-66
Alignment gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s... 206 9e-65
Alignment gi|XP_867041.1| PREDICTED: similar to 26S protease regulatory s... 203 4e-64
Alignment gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub... 202 1e-63
Alignment gi|XP_867031.1| PREDICTED: similar to 26S protease regulatory s... 196 5e-62
>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1
[Canis familiaris].
Length = 406
Score = 501 bits (1289), Expect(2) = e-160
Identities = 260/287 (90%), Positives = 260/287 (90%)
Frame = +2
Query: 65 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 244
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 245 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 424
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 425 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 604
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 605 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 784
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 785 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Score = 83.2 bits (204), Expect(2) = e-160
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 287 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 337
>ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3
[Canis familiaris].
Length = 327
Score = 380 bits (977), Expect(2) = e-124
Identities = 194/208 (93%), Positives = 194/208 (93%)
Frame = +2
Query: 302 MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 481
MDKKKVLVKVHPEGKF TPNCRVALRNDSYTLHKILPNKVDPLVSLMM
Sbjct: 1 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 60
Query: 482 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 661
VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL
Sbjct: 61 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 120
Query: 662 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 841
ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL
Sbjct: 121 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 180
Query: 842 EGGSGGDSEVQRTMLELLNQLDGFEAPK 925
EGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 181 EGGSGGDSEVQRTMLELLNQLDGFEATK 208
Score = 83.2 bits (204), Expect(2) = e-124
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 238 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 289
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 208 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 258
>ref|XP_533103.2| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit,
ATPase 2 [Canis familiaris].
Length = 906
Score = 221 bits (563), Expect(3) = 6e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 583 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 642
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 643 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 702
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 703 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 762
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 763 GGDNEVQRTMLELINQLDGFD 783
Score = 52.4 bits (124), Expect(3) = 6e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 787 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 819
Score = 41.6 bits (96), Expect(3) = 6e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 816 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 867
>ref|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
familiaris].
Length = 403
Score = 218 bits (556), Expect(3) = 3e-71
Identities = 113/243 (46%), Positives = 153/243 (62%)
Frame = +2
Query: 188 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 367
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 368 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 547
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 548 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 727
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 728 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 907
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 908 GFE 916
GF+
Sbjct: 280 GFD 282
Score = 47.0 bits (110), Expect(3) = 3e-71
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
+K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 287 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 43.9 bits (102), Expect(3) = 3e-71
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P+E+ARLDILKIH G I+ +L +GA+++ VCTE GM
Sbjct: 318 PNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 366
>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
ATPase 1 isoform 2 [Canis familiaris].
Length = 440
Score = 214 bits (546), Expect(3) = 2e-70
Identities = 101/174 (58%), Positives = 133/174 (76%)
Frame = +2
Query: 398 CRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKH 577
C V L + + + +L + DPLV +M VEK P TY I LD QI+EIKE +ELP+ H
Sbjct: 148 CSVLLNHKVHAVIGVLMDDTDPLVIVMKVEKTPQETYADIRALDNQIQEIKESVELPLTH 207
Query: 578 PELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMV 757
PE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GS+L+QK++G G +++
Sbjct: 208 PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLI 267
Query: 758 RELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
RELF + EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 268 RELFRVVEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 52.8 bits (125), Expect(3) = 2e-70
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
Score = 39.3 bits (90), Expect(3) = 2e-70
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAGL 404
>ref|XP_856279.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
ATPase 1 isoform 3 [Canis familiaris].
Length = 414
Score = 199 bits (506), Expect(3) = 8e-66
Identities = 92/146 (63%), Positives = 118/146 (80%)
Frame = +2
Query: 482 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 661
VEK P TY I LD QI+EIKE +ELP+ HPE +E +GI PKGV+LYGPPGTGKTLL
Sbjct: 150 VEKTPQETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 209
Query: 662 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 841
A+AVA+ T TF+RV GS+L+QK++G G +++RELF + EHAPSI+F+DEID+IG+ R
Sbjct: 210 AKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVFIDEIDAIGTKRY 269
Query: 842 EGGSGGDSEVQRTMLELLNQLDGFEA 919
+ SGG+ E+QRTMLELLNQLDGF++
Sbjct: 270 DSNSGGEREIQRTMLELLNQLDGFDS 295
Score = 52.8 bits (125), Expect(3) = 8e-66
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 298 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 333
Score = 39.3 bits (90), Expect(3) = 8e-66
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 327 FPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAGL 378
>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 1 [Canis familiaris].
Length = 418
Score = 206 bits (523), Expect(2) = 9e-65
Identities = 110/280 (39%), Positives = 165/280 (58%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300
Score = 60.8 bits (146), Expect(2) = 9e-65
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 353
>ref|XP_867041.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 4 [Canis familiaris].
Length = 419
Score = 203 bits (517), Expect(2) = 4e-64
Identities = 111/281 (39%), Positives = 166/281 (59%), Gaps = 1/281 (0%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 617 GVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAP 793
GVL+YGPPG GKT+LA+AVAHHT D FIRV GSE VQK++GEG RMVR++F +A+E+AP
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTDSAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 260
Query: 794 SIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 301
Score = 60.8 bits (146), Expect(2) = 4e-64
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 305 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 354
>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
isoform 2 [Canis familiaris].
Length = 387
Score = 202 bits (513), Expect(2) = 1e-63
Identities = 98/212 (46%), Positives = 141/212 (66%)
Frame = +2
Query: 281 VGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVD 460
+G+ + A+D+ +V + PN VAL S L +LP + D
Sbjct: 58 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 117
Query: 461 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 640
+ ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPP
Sbjct: 118 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 177
Query: 641 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 820
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DEID
Sbjct: 178 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 237
Query: 821 SIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 238 AIATKRFDAQTGADREVQRILLELLNQMDGFD 269
Score = 60.8 bits (146), Expect(2) = 1e-63
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 273 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 322
>ref|XP_867031.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 3 [Canis familiaris].
Length = 433
Score = 196 bits (499), Expect(2) = 5e-62
Identities = 111/295 (37%), Positives = 165/295 (55%), Gaps = 15/295 (5%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEAL------ 598
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ L
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQLVKGLPA 200
Query: 599 ---------GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
GI P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG R
Sbjct: 201 LSFTSAFQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPR 260
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
MVR++F +A+E+AP+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 315
Score = 60.8 bits (146), Expect(2) = 5e-62
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 319 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 368
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,727,467
Number of extensions: 1293810
Number of successful extensions: 4723
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 4683
Number of HSP's successfully gapped: 182
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho... 501 e-160
Alignment gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ... 484 e-155
Alignment gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens]. 228 3e-74
Alignment gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho... 221 6e-73
Alignment gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie... 218 3e-71
Alignment gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H... 206 9e-65
Alignment gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H... 202 1e-63
Alignment gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien... 202 1e-61
Alignment gi|NP_006787.2| AFG3-like protein 2 [Homo sapiens]. 126 3e-39
Alignment gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo... 131 1e-38
>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
Length = 406
Score = 501 bits (1289), Expect(2) = e-160
Identities = 260/287 (90%), Positives = 260/287 (90%)
Frame = +2
Query: 65 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 244
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 245 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 424
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 425 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 604
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 605 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 784
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 785 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Score = 83.2 bits (204), Expect(2) = e-160
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 287 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 337
>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
Length = 398
Score = 484 bits (1247), Expect(2) = e-155
Identities = 252/279 (90%), Positives = 252/279 (90%)
Frame = +2
Query: 89 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXXXXXX 268
MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQE 60
Query: 269 XGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILP 448
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDSYTLHKILP
Sbjct: 61 QGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILP 120
Query: 449 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 628
NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL
Sbjct: 121 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 180
Query: 629 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 808
YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM
Sbjct: 181 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 240
Query: 809 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 279
Score = 83.2 bits (204), Expect(2) = e-155
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 309 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 360
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 279 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 329
>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
Length = 440
Score = 228 bits (580), Expect(3) = 3e-74
Identities = 107/176 (60%), Positives = 139/176 (78%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 52.8 bits (125), Expect(3) = 3e-74
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
Score = 38.9 bits (89), Expect(3) = 3e-74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGL 404
>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
Length = 433
Score = 221 bits (563), Expect(3) = 6e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 290 GGDNEVQRTMLELINQLDGFD 310
Score = 52.4 bits (124), Expect(3) = 6e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
Score = 41.6 bits (96), Expect(3) = 6e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 343 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
Length = 403
Score = 218 bits (556), Expect(3) = 3e-71
Identities = 113/243 (46%), Positives = 153/243 (62%)
Frame = +2
Query: 188 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 367
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 368 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 547
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 548 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 727
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 728 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 907
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 908 GFE 916
GF+
Sbjct: 280 GFD 282
Score = 47.0 bits (110), Expect(3) = 3e-71
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
+K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 287 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 43.9 bits (102), Expect(3) = 3e-71
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P+E+ARLDILKIH G I+ +L +GA+++ VCTE GM
Sbjct: 318 PNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 366
>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
Length = 418
Score = 206 bits (523), Expect(2) = 9e-65
Identities = 110/280 (39%), Positives = 165/280 (58%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300
Score = 60.8 bits (146), Expect(2) = 9e-65
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 353
>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
Length = 387
Score = 202 bits (513), Expect(2) = 1e-63
Identities = 98/212 (46%), Positives = 141/212 (66%)
Frame = +2
Query: 281 VGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVD 460
+G+ + A+D+ +V + PN VAL S L +LP + D
Sbjct: 58 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 117
Query: 461 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 640
+ ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPP
Sbjct: 118 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 177
Query: 641 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 820
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DEID
Sbjct: 178 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 237
Query: 821 SIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 238 AIATKRFDAQTGADREVQRILLELLNQMDGFD 269
Score = 60.8 bits (146), Expect(2) = 1e-63
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 273 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 322
>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
Length = 439
Score = 202 bits (513), Expect(2) = 1e-61
Identities = 100/175 (57%), Positives = 127/175 (72%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQ 321
Score = 53.9 bits (128), Expect(2) = 1e-61
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
+KVI ATNR+DILD ALLR GR+DRKI+F P + SRKMN
Sbjct: 326 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 374
>ref|NP_006787.2| AFG3-like protein 2 [Homo sapiens].
Length = 797
Score = 126 bits (317), Expect(3) = 3e-39
Identities = 63/139 (45%), Positives = 93/139 (66%)
Frame = +2
Query: 497 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 676
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 304 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 362
Query: 677 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 856
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G G
Sbjct: 363 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 422
Query: 857 GDSEVQRTMLELLNQLDGF 913
G SE + T+ +LL ++DGF
Sbjct: 423 GQSEQENTLNQLLVEMDGF 441
Score = 44.3 bits (103), Expect(3) = 3e-39
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
N+ ++ TNR DILD ALLRPGR DR+I PP
Sbjct: 446 NVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 478
Score = 30.8 bits (68), Expect(3) = 3e-39
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGIN----LRKNAELMPXASGAEVKGVCTETGM 1166
P + R I K+H +L + RK A L P SGA+V VC E +
Sbjct: 478 PDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANVCNEAAL 530
>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
Length = 806
Score = 128 bits (322), Expect(3) = 1e-38
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Frame = +2
Query: 482 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 661
V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 662 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 841
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR- 586
Query: 842 EGGSGGD--SEVQRTMLELLNQLDGFEAPK 925
GG+ GD R + ++L ++DG K
Sbjct: 587 -GGNIGDGGGAADRVINQILTEMDGMSTKK 615
Score = 40.8 bits (94), Expect(3) = 1e-38
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
KN+ +I ATNR DI+D A+LRPGR+D+ I P +
Sbjct: 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Score = 30.4 bits (67), Expect(3) = 1e-38
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVC 1151
P P E++R+ ILK + K+ + ++L A++ SGA++ +C
Sbjct: 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 131 bits (330), Expect(3) = 2e-36
Identities = 65/144 (45%), Positives = 101/144 (70%)
Frame = +2
Query: 485 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 664
E + + Y+ IGG KQ+ +IKE++ELP++HP LF+A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 665 RAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLE 844
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R +
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK 315
Query: 845 GGSGGDSEVQRTMLELLNQLDGFE 916
+ G+ E +R + +LL +DG +
Sbjct: 316 --THGEVE-RRIVSQLLTLMDGLK 336
Score = 31.6 bits (70), Expect(3) = 2e-36
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 910 LRGPKNIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
L+ ++ V+ ATNR + +D AL R GR DR++D P
Sbjct: 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
Score = 29.3 bits (64), Expect(3) = 2e-36
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P RL+IL+IH +L ++L + A GA++ +C+E +
Sbjct: 372 PDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,730,982
Number of extensions: 1260189
Number of successful extensions: 4350
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 4330
Number of HSP's successfully gapped: 103
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]. 501 e-160
Alignment gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]. 228 3e-74
Alignment gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]. 221 5e-73
Alignment gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul... 218 3e-71
Alignment gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu... 206 7e-65
Alignment gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu... 202 1e-61
Alignment gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform... 133 2e-39
Alignment gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ... 133 2e-39
Alignment gi|NP_081406.1| AFG3-like protein 2 [Mus musculus]. 126 2e-39
Alignment gi|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogene... 127 2e-39
>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
Length = 406
Score = 501 bits (1289), Expect(2) = e-160
Identities = 260/287 (90%), Positives = 260/287 (90%)
Frame = +2
Query: 65 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 244
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 245 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 424
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 425 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 604
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 605 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 784
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 785 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Score = 83.2 bits (204), Expect(2) = e-160
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 71.2 bits (173), Expect = 1e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 287 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 337
>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
Length = 440
Score = 228 bits (580), Expect(3) = 3e-74
Identities = 107/176 (60%), Positives = 139/176 (78%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 52.8 bits (125), Expect(3) = 3e-74
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
Score = 38.9 bits (89), Expect(3) = 3e-74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGL 404
>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
Length = 475
Score = 221 bits (563), Expect(3) = 5e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 152 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 211
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 212 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 271
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 272 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 331
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 332 GGDNEVQRTMLELINQLDGFD 352
Score = 52.4 bits (124), Expect(3) = 5e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 356 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 388
Score = 41.6 bits (96), Expect(3) = 5e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 385 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 436
>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
Length = 389
Score = 218 bits (556), Expect(3) = 3e-71
Identities = 113/243 (46%), Positives = 153/243 (62%)
Frame = +2
Query: 188 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 367
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 26 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 85
Query: 368 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 547
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 86 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 145
Query: 548 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 727
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 146 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 205
Query: 728 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 907
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 265
Query: 908 GFE 916
GF+
Sbjct: 266 GFD 268
Score = 47.0 bits (110), Expect(3) = 3e-71
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
+K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 273 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 307
Score = 43.9 bits (102), Expect(3) = 3e-71
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P+E+ARLDILKIH G I+ +L +GA+++ VCTE GM
Sbjct: 304 PNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 352
>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
Length = 418
Score = 206 bits (523), Expect(2) = 7e-65
Identities = 110/280 (39%), Positives = 165/280 (58%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 256
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 257 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 436
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300
Score = 60.8 bits (146), Expect(2) = 7e-65
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 353
>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
Length = 442
Score = 202 bits (513), Expect(2) = 1e-61
Identities = 100/175 (57%), Positives = 127/175 (72%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 150 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 209
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 210 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 269
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+
Sbjct: 270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQ 324
Score = 53.9 bits (128), Expect(2) = 1e-61
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
+KVI ATNR+DILD ALLR GR+DRKI+F P + SRKMN
Sbjct: 329 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 377
>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
Length = 893
Score = 133 bits (335), Expect(3) = 2e-39
Identities = 66/159 (41%), Positives = 99/159 (62%)
Frame = +2
Query: 449 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 628
N + P + VP+ ++ IGGL+ ++K+ +E P+KHP+ F +GI PKGVLL
Sbjct: 607 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLL 666
Query: 629 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 808
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 667 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 726
Query: 809 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
DE+D++ R SG + R + +LL ++DG E K
Sbjct: 727 DELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLK 764
Score = 41.2 bits (95), Expect(3) = 2e-39
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKI 1008
KN+ V+ ATNR D +D AL+RPGRIDR I
Sbjct: 764 KNVTVLAATNRPDRIDKALMRPGRIDRII 792
Score = 27.7 bits (60), Expect(3) = 2e-39
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P P R +IL + F ++ ++L + SGAE+ VC E +
Sbjct: 795 PLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAAL 845
Score = 132 bits (332), Expect(3) = 5e-36
Identities = 67/137 (48%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Frame = +2
Query: 503 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 682
TY+MIGGL+ Q+K I+E+IELP+K PELF++ GI P+G+LLYGPPGTGKT++ARAVA+
Sbjct: 351 TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410
Query: 683 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 862
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 466
Query: 863 SEVQ-RTMLELLNQLDG 910
SEV+ R + LL +DG
Sbjct: 467 SEVEKRVVASLLTLMDG 483
Score = 34.3 bits (77), Expect(3) = 5e-36
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
+ V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 493 VLVLGATNRPQALDAALRRPGRFDKEIEIGIP 524
Score = 23.9 bits (50), Expect(3) = 5e-36
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXAS------GAEVKGVCTETGM 1166
P+ + RLDIL+ L +L AEL+ A+ GA++K +C E G+
Sbjct: 524 PNAQDRLDILQ-----KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGL 573
>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
Length = 892
Score = 133 bits (335), Expect(3) = 2e-39
Identities = 66/159 (41%), Positives = 99/159 (62%)
Frame = +2
Query: 449 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 628
N + P + VP+ ++ IGGL+ ++K+ +E P+KHP+ F +GI PKGVLL
Sbjct: 606 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLL 665
Query: 629 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 808
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 666 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 725
Query: 809 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
DE+D++ R SG + R + +LL ++DG E K
Sbjct: 726 DELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLK 763
Score = 41.2 bits (95), Expect(3) = 2e-39
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKI 1008
KN+ V+ ATNR D +D AL+RPGRIDR I
Sbjct: 763 KNVTVLAATNRPDRIDKALMRPGRIDRII 791
Score = 27.7 bits (60), Expect(3) = 2e-39
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P P R +IL + F ++ ++L + SGAE+ VC E +
Sbjct: 794 PLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAAL 844
Score = 132 bits (332), Expect(3) = 5e-36
Identities = 67/137 (48%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Frame = +2
Query: 503 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 682
TY+MIGGL+ Q+K I+E+IELP+K PELF++ GI P+G+LLYGPPGTGKT++ARAVA+
Sbjct: 350 TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409
Query: 683 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 862
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 465
Query: 863 SEVQ-RTMLELLNQLDG 910
SEV+ R + LL +DG
Sbjct: 466 SEVEKRVVASLLTLMDG 482
Score = 34.3 bits (77), Expect(3) = 5e-36
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
+ V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 492 VLVLGATNRPQALDAALRRPGRFDKEIEIGIP 523
Score = 23.9 bits (50), Expect(3) = 5e-36
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXAS------GAEVKGVCTETGM 1166
P+ + RLDIL+ L +L AEL+ A+ GA++K +C E G+
Sbjct: 523 PNAQDRLDILQ-----KLLRRVPHLLTKAELLRLANNAHGYVGADLKALCNEAGL 572
>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
Length = 802
Score = 126 bits (317), Expect(3) = 2e-39
Identities = 63/139 (45%), Positives = 93/139 (66%)
Frame = +2
Query: 497 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 676
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 303 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 361
Query: 677 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSG 856
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G G
Sbjct: 362 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 421
Query: 857 GDSEVQRTMLELLNQLDGF 913
G SE + T+ +LL ++DGF
Sbjct: 422 GQSEQENTLNQLLVEMDGF 440
Score = 44.3 bits (103), Expect(3) = 2e-39
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
N+ ++ TNR DILD ALLRPGR DR+I PP
Sbjct: 445 NVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 477
Score = 31.6 bits (70), Expect(3) = 2e-39
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGIN----LRKNAELMPXASGAEVKGVCTETGM 1166
P + R I K+H +L + RK A L P SGA+V VC E +
Sbjct: 477 PDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNEAAL 529
>ref|XP_001481383.2| PREDICTED: LOW QUALITY PROTEIN: spermatogenesis associated 5-like 1
[Mus musculus].
Length = 756
Score = 127 bits (320), Expect(3) = 2e-39
Identities = 66/166 (39%), Positives = 103/166 (62%)
Frame = +2
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
KI P+ LM ++ V +E IGGL+ ++K+ +E P+K P+ F +G+ QPK
Sbjct: 438 KIQPSSFRSSTGLMDIKPVG---WEQIGGLEDVKLKLKQCVEWPLKFPQEFARMGLTQPK 494
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
G+LLYGPPG KT L RA+A C+F+ V G++L F+G+ +++ ++F AR + P+
Sbjct: 495 GLLLYGPPGCAKTTLVRALATGCHCSFVSVCGADLFSPFVGDSEKVLSQVFRQARANTPA 554
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPKISR 934
++F+DEIDS+ SR G SG D+ +R + LLN+LDG + R
Sbjct: 555 LVFLDEIDSVLGSRSVGTSGCDAR-ERVLSVLLNELDGVGVRTVER 599
Score = 44.3 bits (103), Expect(3) = 2e-39
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
+++ +++ATNR D+LD ALLRPGR+D+ I PP
Sbjct: 615 RSVMIVVATNRPDVLDDALLRPGRLDKIIYVPPP 648
Score = 30.0 bits (66), Expect(3) = 2e-39
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P P +E RL ILK+ + + ++L A SGA+++ +C E +
Sbjct: 646 PPPDQEGRLSILKVCTNNMPVGPDVSLENLAAETCFFSGADLRNLCKEVSL 696
Score = 92.0 bits (227), Expect(2) = 6e-24
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Frame = +2
Query: 515 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 694
+GGL + ++E++ LP+++P ALG+A P+GVLL GPPG GKT L RAVA T
Sbjct: 195 LGGLSETADSLRELLRLPLRYPLALAALGLAVPRGVLLAGPPGVGKTQLVRAVARETGAE 254
Query: 695 FIRVSGSELVQKFIGEGARMVRELFVMAREHA---PSIIFMDEIDSIGSSRLEGGSGGDS 865
+ VS L GE VR +F A+E A PS++F+DE+D++ R G +
Sbjct: 255 LLAVSAPALQGSRPGETEENVRRIFQRAQELASRGPSLLFLDEVDALCPRR---GGPHRA 311
Query: 866 EVQRTMLELLNQLDG 910
R + ++L LDG
Sbjct: 312 PESRVVAQVLTLLDG 326
Score = 37.7 bits (86), Expect(2) = 6e-24
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +1
Query: 934 VIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKM 1071
V+ ATNR D LD AL RPGR DR++ PT + + I+ KM
Sbjct: 335 VVGATNRPDELDPALRRPGRFDREVVIGTPTLKQREAILQVITSKM 380
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,458,050
Number of extensions: 1051012
Number of successful extensions: 3612
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 3589
Number of HSP's successfully gapped: 85
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]. 501 e-160
Alignment gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4... 228 2e-74
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 228 2e-74
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 221 4e-73
Alignment gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7... 221 4e-73
Alignment gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1... 218 2e-71
Alignment gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease... 205 9e-65
Alignment gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6... 202 9e-62
Alignment gi|NP_001171382.1| spermatogenesis-associated protein 5-like pr... 132 2e-38
Alignment gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc... 135 2e-38
>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
Length = 406
Score = 501 bits (1289), Expect(2) = e-160
Identities = 260/287 (90%), Positives = 260/287 (90%)
Frame = +2
Query: 65 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 244
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 245 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 424
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 425 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 604
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 605 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 784
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 785 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA K
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 287
Score = 83.2 bits (204), Expect(2) = e-160
Identities = 42/52 (80%), Positives = 43/52 (82%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P+EEARLDILKIH K LT GINLRK AELMP ASGAEVKGVCTE GM
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 368
Score = 71.2 bits (173), Expect = 1e-12
Identities = 37/51 (72%), Positives = 39/51 (76%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
KNIKVIMATNRIDILDSALLRPGRIDRKI+F PP + SRKMN
Sbjct: 287 KNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 337
>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus
scrofa].
Length = 440
Score = 228 bits (580), Expect(3) = 2e-74
Identities = 107/176 (60%), Positives = 139/176 (78%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321
Score = 52.8 bits (125), Expect(3) = 2e-74
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
Score = 38.9 bits (89), Expect(3) = 2e-74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGL 404
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus
scrofa].
Length = 367
Score = 228 bits (580), Expect(3) = 2e-74
Identities = 107/176 (60%), Positives = 139/176 (78%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 73 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 132
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 133 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 192
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEA 919
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++
Sbjct: 193 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 248
Score = 52.8 bits (125), Expect(3) = 2e-74
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
++KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 251 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 286
Score = 38.9 bits (89), Expect(3) = 2e-74
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
FP P E+ + I +IH S+ L + L SGA++K +CTE G+
Sbjct: 280 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGL 331
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 221 bits (563), Expect(3) = 4e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 157 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 216
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 217 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 276
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 277 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 336
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 337 GGDNEVQRTMLELINQLDGFD 357
Score = 52.4 bits (124), Expect(3) = 4e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 361 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 393
Score = 41.6 bits (96), Expect(3) = 4e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 390 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 441
>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 433
Score = 221 bits (563), Expect(3) = 4e-73
Identities = 111/201 (55%), Positives = 140/201 (69%)
Frame = +2
Query: 314 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 493
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 494 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 673
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 674 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGS 853
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 854 GGDSEVQRTMLELLNQLDGFE 916
GGD+EVQRTMLEL+NQLDGF+
Sbjct: 290 GGDNEVQRTMLELINQLDGFD 310
Score = 52.4 bits (124), Expect(3) = 4e-73
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
Score = 41.6 bits (96), Expect(3) = 4e-73
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 1011 FPTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
F P E R I KIH + I A L P ++GAE++ VCTE GM
Sbjct: 343 FSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 394
>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
Length = 403
Score = 218 bits (556), Expect(3) = 2e-71
Identities = 113/243 (46%), Positives = 153/243 (62%)
Frame = +2
Query: 188 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 367
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 368 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 547
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 548 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 727
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 728 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 907
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 908 GFE 916
GF+
Sbjct: 280 GFD 282
Score = 47.0 bits (110), Expect(3) = 2e-71
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRR 1032
+K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 287 VKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 43.9 bits (102), Expect(3) = 2e-71
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P+E+ARLDILKIH G I+ +L +GA+++ VCTE GM
Sbjct: 318 PNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGM 366
>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
6B-like [Sus scrofa].
Length = 418
Score = 205 bits (521), Expect(2) = 9e-65
Identities = 112/282 (39%), Positives = 166/282 (58%), Gaps = 2/282 (0%)
Frame = +2
Query: 77 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVXXXXXX 250
GPE +LE+ + Q L +E + + D+ +NL++ L AQ +
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQXEVKRIQSIPLV-- 88
Query: 251 XXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYT 430
+G+ + A+D+ +V + PN VAL S
Sbjct: 89 ----------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNA 138
Query: 431 LHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQ 610
L +LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI
Sbjct: 139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198
Query: 611 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 790
P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+A
Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258
Query: 791 PSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
P+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+
Sbjct: 259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFD 300
Score = 60.8 bits (146), Expect(2) = 9e-65
Identities = 31/50 (62%), Positives = 36/50 (72%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
N+KVIMATNR D LD ALLRPGR+DRKI+F P RR +I+ KMN
Sbjct: 304 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMN 353
>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
Length = 439
Score = 202 bits (513), Expect(2) = 9e-62
Identities = 100/175 (57%), Positives = 127/175 (72%)
Frame = +2
Query: 392 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 571
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 572 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 751
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 752 MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFE 916
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQ 321
Score = 53.9 bits (128), Expect(2) = 9e-62
Identities = 28/49 (57%), Positives = 33/49 (67%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKMN 1074
+KVI ATNR+DILD ALLR GR+DRKI+F P + SRKMN
Sbjct: 326 VKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMN 374
>ref|NP_001171382.1| spermatogenesis-associated protein 5-like protein 1 [Sus scrofa].
Length = 755
Score = 132 bits (332), Expect(2) = 2e-38
Identities = 69/166 (41%), Positives = 106/166 (63%)
Frame = +2
Query: 437 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 616
KI P+ ++ LM V+ + T+E IGGL+ +++K+ IE P+K P F +G+ QPK
Sbjct: 445 KIQPSSFRSVIGLMDVKPI---TWEQIGGLEDAKRKLKQSIEWPLKFPREFVRMGLTQPK 501
Query: 617 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 796
GVLLYGPPG KT L RA+A C+F+ VSG++L F+G+ +++ ++F AR + P+
Sbjct: 502 GVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADLFSPFVGDSEKILSQVFQQARANTPA 561
Query: 797 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPKISR 934
++F+DEIDSI SR +G + + +R + LLN+LDG I R
Sbjct: 562 VVFLDEIDSILGSRSISKTGCNVQ-ERVLSVLLNELDGVGLKTIER 606
Score = 45.8 bits (107), Expect(2) = 2e-38
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 925 NIKVIMATNRIDILDSALLRPGRIDRKIDFQPPTRRPGWTF*RSISRKM 1071
N+ ++ ATNR D+LD ALLRPGR+D+ I PP + + R ++ M
Sbjct: 623 NVMIVAATNRPDVLDDALLRPGRLDKIIYIPPPDEKGRLSILRVCTKNM 671
Score = 89.0 bits (219), Expect(3) = 2e-25
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Frame = +2
Query: 515 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT 694
+GGL + ++E++ LP+ +P F +LG+A P+GVLL GPPG GKT L RAVA
Sbjct: 202 LGGLAEAADSLRELLRLPLLYPRSFASLGLAVPRGVLLAGPPGVGKTQLVRAVAREAGAE 261
Query: 695 FIRVSGSELVQKFIGEGARMVRELFVMAREHA---PSIIFMDEIDSIGSSRLEGGSGGDS 865
+ VS L GE VR +F A+E A P+++F+DE+D++ R +S
Sbjct: 262 LLAVSAPALQGARPGETEENVRRVFQRAQELAGRRPTLLFLDEVDALCPRRGGPHQAPES 321
Query: 866 EVQRTMLELLNQLDG 910
V +L LL+ + G
Sbjct: 322 RVVAQVLTLLDGISG 336
Score = 39.7 bits (91), Expect(3) = 2e-25
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 910 LRGPKNIKVIMATNRIDILDSALLRPGRIDRKIDFQPPT 1026
+ G + + V+ +TNR D LD AL RPGR DR++ PT
Sbjct: 334 ISGDREVVVVGSTNRPDALDPALRRPGRFDREVVIGTPT 372
Score = 25.8 bits (55), Expect(3) = 2e-25
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 1017 TPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
TP R IL++ SK ++ ++L AE+ GA++ +C E M
Sbjct: 370 TPTLGQRKAILQVITSKMPISSQVDLSLLAEMTVGYVGADLTALCREAAM 419
>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
Length = 887
Score = 133 bits (335), Expect(3) = 2e-38
Identities = 67/159 (42%), Positives = 98/159 (61%)
Frame = +2
Query: 449 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 628
N + P + VP+ ++ IGGL+ ++K+ +E P+KHPE F +GI PKGVLL
Sbjct: 601 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLL 660
Query: 629 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 808
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 661 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 720
Query: 809 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAPK 925
DE+D++ R SG + R + +LL +DG E K
Sbjct: 721 DELDALAVER-GSSSGAGNVADRVLAQLLTXMDGIEQLK 758
Score = 38.9 bits (89), Expect(3) = 2e-38
Identities = 17/29 (58%), Positives = 23/29 (79%)
Frame = +1
Query: 922 KNIKVIMATNRIDILDSALLRPGRIDRKI 1008
K++ ++ ATNR D +D AL+RPGRIDR I
Sbjct: 758 KDVTILAATNRPDRIDKALMRPGRIDRII 786
Score = 26.2 bits (56), Expect(3) = 2e-38
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +3
Query: 1014 PTPHEEARLDILKIHFSKNELTGGINLRKNAELMPXASGAEVKGVCTETGM 1166
P P R +I + F ++ ++L + SGAE+ VC E +
Sbjct: 789 PLPDAATRREIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVCREAAL 839
Score = 135 bits (340), Expect(3) = 4e-37
Identities = 68/137 (49%), Positives = 96/137 (70%), Gaps = 1/137 (0%)
Frame = +2
Query: 503 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 682
TY+MIGGL+ Q+KEI+E+IELP+K PELF++ GI+ P+GVLLYGPPGTGKT++ARAVA+
Sbjct: 345 TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANE 404
Query: 683 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGD 862
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 405 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 460
Query: 863 SEVQ-RTMLELLNQLDG 910
+EV+ R + LL +DG
Sbjct: 461 NEVEKRVVASLLTLMDG 477
Score = 34.3 bits (77), Expect(3) = 4e-37
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +1
Query: 928 IKVIMATNRIDILDSALLRPGRIDRKIDFQPP 1023
+ V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 487 VLVLGATNRPHALDAALRRPGRFDKEIEIGVP 518
Score = 24.3 bits (51), Expect(3) = 4e-37
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 1020 PHEEARLDILKIHFSKNELTGGINLRKNAELMPXAS------GAEVKGVCTETGM 1166
P+ + RLDIL+ L +L AEL+ A+ GA++K +C E G+
Sbjct: 518 PNAQDRLDILQ-----KLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGL 567
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,547,813
Number of extensions: 808197
Number of successful extensions: 2874
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 72
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002100
(1168 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 460 e-127
>Sscrofa_Chr12
|| Length = 63588571
Score = 460 bits (232), Expect = e-127
Identities = 232/232 (100%)
Strand = Plus / Minus
Query: 386 gtgacacccaactgccgggtggctctcagaaatgatagctacactttgcacaagatcctg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093981 gtgacacccaactgccgggtggctctcagaaatgatagctacactttgcacaagatcctg 15093922
Query: 446 cccaacaaggtagatccactggtgtcactgatgatggtggagaaagtgccagattcaact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093921 cccaacaaggtagatccactggtgtcactgatgatggtggagaaagtgccagattcaact 15093862
Query: 506 tacgagatgattggtggactggacaagcagatcaaggagatcaaagaagtgatcgagctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093861 tacgagatgattggtggactggacaagcagatcaaggagatcaaagaagtgatcgagctg 15093802
Query: 566 cccgtgaagcatcctgagctgtttgaagcgctgggcattgcacagcccaagg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093801 cccgtgaagcatcctgagctgtttgaagcgctgggcattgcacagcccaagg 15093750
Score = 371 bits (187), Expect = e-100
Identities = 194/195 (99%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 742 aggggcaaggatggtgagggagctgtttgtcatggcccgagaacacgctccatctatcat 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093213 aggggcaaggatggtgagggagctgtttgtcatggcccgagaacacgctccatctatcat 15093154
Query: 802 cttcatggacgaaatcgactccattggctcctcgcggctggaagggggctctggagggga 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093153 cttcatggacgaaatcgactccattggctcctcgcggctggaagggggctctggagggga 15093094
Query: 862 cagtgaagtccagcgcacgatgctggagctgctcaaccagctggacggcttcgaggcc-c 920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15093093 cagtgaagtccagcgcacgatgctggagctgctcaaccagctggacggcttcgaggccac 15093034
Query: 921 caaaaatatcaaggt 935
|||||||||||||||
Sbjct: 15093033 caaaaatatcaaggt 15093019
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 615 agggagtgctgctatacggacccccaggcactgggaagacactgctggcccgagctgtgg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093434 agggagtgctgctatacggacccccaggcactgggaagacactgctggcccgagctgtgg 15093375
Query: 675 cccatcatacagactgcacctttattcgcgtctctggctctgagctggtacagaaattca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093374 cccatcatacagactgcacctttattcgcgtctctggctctgagctggtacagaaattca 15093315
Query: 735 ttggggaagg 744
||||||||||
Sbjct: 15093314 ttggggaagg 15093305
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 229 agttcgcctgttgcgagaggagctacagctactgcaagaacagggctcctatgtggggga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094378 agttcgcctgttgcgagaggagctacagctactgcaagaacagggctcctatgtggggga 15094319
Query: 289 agtagtccgggccatggacaagaaaaaagtgttggttaaggt 330
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094318 agtagtccgggccatggacaagaaaaaagtgttggttaaggt 15094277
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 2 cccgcttccgcgcctgcgcaccaaagcggctctgatgccgggggcctccgcggaagaggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15096547 cccgcttccgcgcctgcgcaccaaagcggctctgatgccgggggcctccgcggaagaggg 15096488
Query: 62 aagatggcgcttgacgggcctgagcag 88
|||||||||||||||||||||||||||
Sbjct: 15096487 aagatggcgcttgacgggcctgagcag 15096461
Score = 170 bits (86), Expect = 1e-39
Identities = 99/102 (97%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 932 aggttatcatggccactaataggattgacatcctggactcggcgctgctccgcccagggc 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15092933 aggttatcatggccactaataggattgacatcctggactcggcgctgctccgcccagggc 15092874
Query: 992 gcatcgacagaaaaattgatttccaacccccc-acgaggagg 1032
||||||||||||||||||| |||| ||||||| |||||||||
Sbjct: 15092873 gcatcgacagaaaaattgaattcccaccccccaacgaggagg 15092832
Score = 167 bits (84), Expect = 2e-38
Identities = 109/115 (94%), Gaps = 2/115 (1%)
Strand = Plus / Minus
Query: 1030 aggcccggctggacattttgaagatccatttctcgaaaaatgaac-tgaccgggggcatc 1088
|||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||
Sbjct: 15092756 aggcccggctggacattttgaagatccatt-ctcggaaaatgaacctgacccggggcatc 15092698
Query: 1089 aacctgagaaaaaatgctgagctcatgccangagcatcaggcgctgaagtgaagg 1143
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 15092697 aacctgagaaaaattgctgagctcatgccaggagcatcaggcgctgaagtgaagg 15092643
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 86 cagatggagctggaagaggggaaggcaggcagtggactccgccagtattatctgtccaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15095944 cagatggagctggaagaggggaaggcaggcagtggactccgccagtattatctgtccaag 15095885
Query: 146 attgaagaactccag 160
|||||||||||||||
Sbjct: 15095884 attgaagaactccag 15095870
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 158 cagctgattgtgaatgacaagagccagaatctccgcaggctgcaagcacagaggaatgag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094878 cagctgattgtgaatgacaagagccagaatctccgcaggctgcaagcacagaggaatgag 15094819
Query: 218 cttaatgcaaaag 230
|||||||||||||
Sbjct: 15094818 cttaatgcaaaag 15094806
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 327 aggtgcatcccgagggcaagtttgtcgtagacgtggacaagaacatcgacatcaatgatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094120 aggtgcatcccgagggcaagtttgtcgtagacgtggacaagaacatcgacatcaatgatg 15094061
Query: 387 tga 389
|||
Sbjct: 15094060 tga 15094058
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,633,695
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 1168
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1147
Effective length of database: 2,808,413,156
Effective search space: 3221249889932
Effective search space used: 3221249889932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)