Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]. 560 e-162
Alignment gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru... 274 1e-73
Alignment gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru... 266 2e-71
Alignment gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau... 260 4e-70
Alignment gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur... 256 2e-68
Alignment gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur... 246 3e-65
Alignment gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2... 237 1e-62
Alignment gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like... 171 1e-42
Alignment gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus]. 164 2e-40
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 162 6e-40
>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
Length = 406
Score = 560 bits (1442), Expect(2) = e-162
Identities = 291/320 (90%), Positives = 292/320 (91%)
Frame = +3
Query: 42 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 221
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 222 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 401
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 402 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 581
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 582 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 761
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 762 HAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 941
HAPSIIFMDEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 300
Query: 942 LDSALLRPGRIDRKIDFHPP 1001
LDSALLRPGRIDRKI+F PP
Sbjct: 301 LDSALLRPGRIDRKIEFPPP 320
Score = 31.6 bits (70), Expect(2) = e-162
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 317 FPPPNEEARLDILKI 331
>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
Length = 440
Score = 274 bits (700), Expect = 1e-73
Identities = 131/214 (61%), Positives = 169/214 (78%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
Length = 433
Score = 266 bits (681), Expect = 2e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
Length = 389
Score = 260 bits (665), Expect(2) = 4e-70
Identities = 135/282 (47%), Positives = 179/282 (63%)
Frame = +3
Query: 165 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 344
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 26 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 85
Query: 345 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 524
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 86 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 145
Query: 525 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 704
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 146 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 205
Query: 705 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLD 884
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 265
Query: 885 GFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
GF+ +K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 266 GFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 307
Score = 23.9 bits (50), Expect(2) = 4e-70
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 998 PHEKARLDILKI 1033
P+E+ARLDILKI
Sbjct: 304 PNEQARLDILKI 315
>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
Length = 418
Score = 256 bits (655), Expect = 2e-68
Identities = 137/319 (42%), Positives = 195/319 (61%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 593
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 594 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 773
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 774 IIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 953
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD A
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPA 320
Query: 954 LLRPGRIDRKIDFHPPTRR 1010
LLRPGR+DRKI+F P RR
Sbjct: 321 LLRPGRLDRKIEFPLPDRR 339
>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
Length = 440
Score = 246 bits (627), Expect = 3e-65
Identities = 123/211 (58%), Positives = 154/211 (72%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 148 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 207
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 208 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 267
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+ +
Sbjct: 268 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 327
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
KVI ATNR+DILD ALLR GR+DRKI+F P
Sbjct: 328 KVIAATNRVDILDPALLRSGRLDRKIEFPMP 358
>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
[Bos taurus].
Length = 456
Score = 237 bits (605), Expect = 1e-62
Identities = 123/227 (54%), Positives = 155/227 (68%), Gaps = 16/227 (7%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEV----- 533
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E++E
Sbjct: 148 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQEVREARHLTS 207
Query: 534 -----------IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 680
I LP+ H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++
Sbjct: 208 LLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLK 267
Query: 681 VSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTM 860
++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTM
Sbjct: 268 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTM 327
Query: 861 LELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
LELLNQLDGF+ +KVI ATNR+DILD ALLR GR+DRKI+F P
Sbjct: 328 LELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMP 374
>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
Length = 1004
Score = 171 bits (432), Expect = 1e-42
Identities = 86/189 (45%), Positives = 124/189 (65%), Gaps = 2/189 (1%)
Frame = +3
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
N + P + VP+ ++ IGGL+ ++K+ +E P+KHPE F +GI PKGVLL
Sbjct: 718 NDIRPSAMREVAVDVPNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLL 777
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 778 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 837
Query: 786 DEIDSIGSSRLERG--SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 959
DE+D++ +ERG SG + R + +LL ++DG E KN+ ++ ATNR D +D AL+
Sbjct: 838 DELDALA---VERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALM 894
Query: 960 RPGRIDRKI 986
RPGRIDR I
Sbjct: 895 RPGRIDRII 903
Score = 157 bits (398), Expect = 1e-38
Identities = 84/178 (47%), Positives = 119/178 (66%), Gaps = 4/178 (2%)
Frame = +3
Query: 480 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 659
TY+MIGGL+ Q+KEI+E+IELP+K PELF++ GI P+GVLLYGPPGTGKT++ARAVA+
Sbjct: 462 TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANE 521
Query: 660 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGD 839
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 522 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 577
Query: 840 SEVQ-RTMLELLNQLDGFEATKN---IKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
+EV+ R + LL +DG + + + V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 578 NEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVP 635
>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
Length = 805
Score = 164 bits (414), Expect = 2e-40
Identities = 82/176 (46%), Positives = 117/176 (66%)
Frame = +3
Query: 474 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 653
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 305 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 363
Query: 654 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSG 833
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G
Sbjct: 364 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 423
Query: 834 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
G SE + T+ +LL ++DGF T N+ ++ TNR DILD AL+RPGR DR+I PP
Sbjct: 424 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPGRFDRQIFIGPP 479
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 162 bits (409), Expect = 6e-40
Identities = 79/176 (44%), Positives = 114/176 (64%)
Frame = +3
Query: 459 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 638
V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 639 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 818
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 819 ERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKI 986
G R + ++L ++DG KN+ +I ATNR DI+D A+LRPGR+D+ I
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 157 bits (398), Expect = 1e-38
Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +3
Query: 462 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 641
E + + Y+ IGG KQ+ +IKE++ELP++HP LF+A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 642 RAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLE 821
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R E
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-E 314
Query: 822 RGSGGDSEVQRTML-ELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHP 998
+ G EV+R ++ +LL +DG + ++ V+ ATNR + +D AL R GR DR++D
Sbjct: 315 KTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 999 P 1001
P
Sbjct: 372 P 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,446,351
Number of extensions: 1125302
Number of successful extensions: 3910
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 3868
Number of HSP's successfully gapped: 62
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S... 560 e-162
Alignment gi|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (S... 439 e-126
Alignment gi|XP_533103.2| PREDICTED: similar to proteasome (prosome, macr... 266 2e-71
Alignment gi|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase sub... 260 4e-70
Alignment gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro... 261 1e-69
Alignment gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s... 256 2e-68
Alignment gi|XP_867041.1| PREDICTED: similar to 26S protease regulatory s... 254 9e-68
Alignment gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub... 253 3e-67
Alignment gi|XP_867031.1| PREDICTED: similar to 26S protease regulatory s... 247 1e-65
Alignment gi|XP_849002.1| PREDICTED: similar to 26S protease regulatory s... 246 2e-65
>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
familiaris].
Length = 406
Score = 560 bits (1442), Expect(2) = e-162
Identities = 291/320 (90%), Positives = 292/320 (91%)
Frame = +3
Query: 42 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 221
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 222 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 401
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 402 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 581
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 582 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 761
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 762 HAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 941
HAPSIIFMDEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 300
Query: 942 LDSALLRPGRIDRKIDFHPP 1001
LDSALLRPGRIDRKI+F PP
Sbjct: 301 LDSALLRPGRIDRKIEFPPP 320
Score = 31.6 bits (70), Expect(2) = e-162
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 317 FPPPNEEARLDILKI 331
>ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis
familiaris].
Length = 327
Score = 439 bits (1130), Expect(2) = e-126
Identities = 225/241 (93%), Positives = 226/241 (93%)
Frame = +3
Query: 279 MDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 458
MDKKKVLVKVHPEGKF TPNCRVALRNDSYTLHKILPNKVDPLVSLMM
Sbjct: 1 MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 60
Query: 459 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 638
VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL
Sbjct: 61 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 120
Query: 639 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 818
ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL
Sbjct: 121 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 180
Query: 819 ERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHP 998
E GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKI+F P
Sbjct: 181 EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 240
Query: 999 P 1001
P
Sbjct: 241 P 241
Score = 31.6 bits (70), Expect(2) = e-126
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 238 FPPPNEEARLDILKI 252
>ref|XP_533103.2| PREDICTED: similar to proteasome (prosome, macropain) 26S subunit,
ATPase 2 [Canis familiaris].
Length = 906
Score = 266 bits (681), Expect = 2e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 583 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 642
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 643 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 702
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 703 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 762
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 763 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 819
>ref|XP_535701.2| PREDICTED: similar to proteasome 26S ATPase subunit 6 [Canis
familiaris].
Length = 403
Score = 260 bits (665), Expect(2) = 4e-70
Identities = 135/282 (47%), Positives = 179/282 (63%)
Frame = +3
Query: 165 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 344
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 345 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 524
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 525 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 704
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 705 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLD 884
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 885 GFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
GF+ +K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 280 GFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 23.9 bits (50), Expect(2) = 4e-70
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 998 PHEKARLDILKI 1033
P+E+ARLDILKI
Sbjct: 318 PNEQARLDILKI 329
>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
ATPase 1 isoform 2 [Canis familiaris].
Length = 440
Score = 261 bits (666), Expect = 1e-69
Identities = 125/212 (58%), Positives = 163/212 (76%)
Frame = +3
Query: 375 CRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKH 554
C V L + + + +L + DPLV +M VEK P TY I LD QI+EIKE +ELP+ H
Sbjct: 148 CSVLLNHKVHAVIGVLMDDTDPLVIVMKVEKTPQETYADIRALDNQIQEIKESVELPLTH 207
Query: 555 PELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMV 734
PE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GS+L+QK++G G +++
Sbjct: 208 PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLI 267
Query: 735 RELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKV 914
RELF + EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++KV
Sbjct: 268 RELFRVVEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKV 327
Query: 915 IMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
IMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 1 [Canis familiaris].
Length = 418
Score = 256 bits (655), Expect = 2e-68
Identities = 137/319 (42%), Positives = 195/319 (61%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 593
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 594 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 773
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 774 IIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 953
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD A
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPA 320
Query: 954 LLRPGRIDRKIDFHPPTRR 1010
LLRPGR+DRKI+F P RR
Sbjct: 321 LLRPGRLDRKIEFPLPDRR 339
>ref|XP_867041.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 4 [Canis familiaris].
Length = 419
Score = 254 bits (649), Expect = 9e-68
Identities = 138/320 (43%), Positives = 196/320 (61%), Gaps = 1/320 (0%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 593
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 594 GVLLYGPPGTGKTLLARAVAHHT-DCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAP 770
GVL+YGPPG GKT+LA+AVAHHT D FIRV GSE VQK++GEG RMVR++F +A+E+AP
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTDSAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 260
Query: 771 SIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDS 950
+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD
Sbjct: 261 AIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDP 320
Query: 951 ALLRPGRIDRKIDFHPPTRR 1010
ALLRPGR+DRKI+F P RR
Sbjct: 321 ALLRPGRLDRKIEFPLPDRR 340
>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
isoform 2 [Canis familiaris].
Length = 387
Score = 253 bits (645), Expect = 3e-67
Identities = 125/251 (49%), Positives = 171/251 (68%)
Frame = +3
Query: 258 VGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVD 437
+G+ + A+D+ +V + PN VAL S L +LP + D
Sbjct: 58 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 117
Query: 438 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 617
+ ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPP
Sbjct: 118 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 177
Query: 618 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 797
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DEID
Sbjct: 178 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 237
Query: 798 SIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRID 977
+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD ALLRPGR+D
Sbjct: 238 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLD 297
Query: 978 RKIDFHPPTRR 1010
RKI+F P RR
Sbjct: 298 RKIEFPLPDRR 308
>ref|XP_867031.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 3 [Canis familiaris].
Length = 433
Score = 247 bits (631), Expect = 1e-65
Identities = 138/334 (41%), Positives = 195/334 (58%), Gaps = 15/334 (4%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEAL------ 575
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ L
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQLVKGLPA 200
Query: 576 ---------GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
GI P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG R
Sbjct: 201 LSFTSAFQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPR 260
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
MVR++F +A+E+AP+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+
Sbjct: 261 MVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNV 320
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNR D LD ALLRPGR+DRKI+F P RR
Sbjct: 321 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 354
>ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
TAT-binding protein homolog SATA) [Canis familiaris].
Length = 403
Score = 246 bits (629), Expect = 2e-65
Identities = 126/248 (50%), Positives = 163/248 (65%)
Frame = +3
Query: 258 VGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVD 437
V V+ +D K ++K + P V + DSY + + LP + D
Sbjct: 74 VSNVIELLDGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYD 133
Query: 438 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 617
V M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPP
Sbjct: 134 SRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPP 193
Query: 618 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 797
GTGKTLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D
Sbjct: 194 GTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELD 253
Query: 798 SIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRID 977
+ G+ R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D
Sbjct: 254 ATGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD 313
Query: 978 RKIDFHPP 1001
+KI+F P
Sbjct: 314 QKIEFPMP 321
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,218,523
Number of extensions: 1162113
Number of successful extensions: 4221
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 4147
Number of HSP's successfully gapped: 93
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho... 560 e-162
Alignment gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ... 543 e-157
Alignment gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens]. 274 1e-73
Alignment gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho... 266 2e-71
Alignment gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie... 260 4e-70
Alignment gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H... 256 2e-68
Alignment gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H... 253 3e-67
Alignment gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien... 246 3e-65
Alignment gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi... 164 9e-41
Alignment gi|NP_006787.2| AFG3-like protein 2 [Homo sapiens]. 164 9e-41
>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
Length = 406
Score = 560 bits (1442), Expect(2) = e-162
Identities = 291/320 (90%), Positives = 292/320 (91%)
Frame = +3
Query: 42 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 221
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 222 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 401
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 402 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 581
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 582 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 761
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 762 HAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 941
HAPSIIFMDEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 300
Query: 942 LDSALLRPGRIDRKIDFHPP 1001
LDSALLRPGRIDRKI+F PP
Sbjct: 301 LDSALLRPGRIDRKIEFPPP 320
Score = 31.6 bits (70), Expect(2) = e-162
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 317 FPPPNEEARLDILKI 331
>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
Length = 398
Score = 543 bits (1400), Expect(2) = e-157
Identities = 283/312 (90%), Positives = 284/312 (91%)
Frame = +3
Query: 66 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXXXXXX 245
MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQE 60
Query: 246 XGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILP 425
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDSYTLHKILP
Sbjct: 61 QGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILP 120
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL
Sbjct: 121 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 180
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM
Sbjct: 181 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 240
Query: 786 DEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRP 965
DEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRP
Sbjct: 241 DEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRP 300
Query: 966 GRIDRKIDFHPP 1001
GRIDRKI+F PP
Sbjct: 301 GRIDRKIEFPPP 312
Score = 31.6 bits (70), Expect(2) = e-157
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 309 FPPPNEEARLDILKI 323
>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
Length = 440
Score = 274 bits (700), Expect = 1e-73
Identities = 131/214 (61%), Positives = 169/214 (78%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
Length = 433
Score = 266 bits (681), Expect = 2e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
Length = 403
Score = 260 bits (665), Expect(2) = 4e-70
Identities = 135/282 (47%), Positives = 179/282 (63%)
Frame = +3
Query: 165 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 344
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 345 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 524
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 525 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 704
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 705 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLD 884
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 885 GFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
GF+ +K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 280 GFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 23.9 bits (50), Expect(2) = 4e-70
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 998 PHEKARLDILKI 1033
P+E+ARLDILKI
Sbjct: 318 PNEQARLDILKI 329
>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
Length = 418
Score = 256 bits (655), Expect = 2e-68
Identities = 137/319 (42%), Positives = 195/319 (61%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 593
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 594 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 773
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 774 IIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 953
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD A
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPA 320
Query: 954 LLRPGRIDRKIDFHPPTRR 1010
LLRPGR+DRKI+F P RR
Sbjct: 321 LLRPGRLDRKIEFPLPDRR 339
>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
Length = 387
Score = 253 bits (645), Expect = 3e-67
Identities = 125/251 (49%), Positives = 171/251 (68%)
Frame = +3
Query: 258 VGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVD 437
+G+ + A+D+ +V + PN VAL S L +LP + D
Sbjct: 58 IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEAD 117
Query: 438 PLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPP 617
+ ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+GVL+YGPP
Sbjct: 118 SSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPP 177
Query: 618 GTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 797
G GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DEID
Sbjct: 178 GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 237
Query: 798 SIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRID 977
+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD ALLRPGR+D
Sbjct: 238 AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLD 297
Query: 978 RKIDFHPPTRR 1010
RKI+F P RR
Sbjct: 298 RKIEFPLPDRR 308
>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
Length = 439
Score = 246 bits (627), Expect = 3e-65
Identities = 123/211 (58%), Positives = 154/211 (72%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+ +
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
KVI ATNR+DILD ALLR GR+DRKI+F P
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMP 357
>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
Length = 893
Score = 164 bits (416), Expect = 9e-41
Identities = 84/189 (44%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Frame = +3
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
N + P + VP+ ++ IGGL+ ++++ +E P+KHPE F +GI PKGVLL
Sbjct: 607 NDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVLL 666
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE F AR APSIIF
Sbjct: 667 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIFF 726
Query: 786 DEIDSIGSSRLERGS--GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 959
DE+D++ +ERGS G + R + +LL ++DG E K++ ++ ATNR D +D AL+
Sbjct: 727 DELDALA---VERGSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALM 783
Query: 960 RPGRIDRKI 986
RPGRIDR I
Sbjct: 784 RPGRIDRII 792
Score = 155 bits (391), Expect = 7e-38
Identities = 83/178 (46%), Positives = 117/178 (65%), Gaps = 4/178 (2%)
Frame = +3
Query: 480 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 659
TY+MIGGL Q+K I+E+IELP+K PELF++ GI P+GVLLYGPPGTGKT++ARAVA+
Sbjct: 351 TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANE 410
Query: 660 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGD 839
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 411 VGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 466
Query: 840 SEVQ-RTMLELLNQLDGFEATKN---IKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
+EV+ R + LL +DG + + + V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 467 NEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVP 524
>ref|NP_006787.2| AFG3-like protein 2 [Homo sapiens].
Length = 797
Score = 164 bits (416), Expect = 9e-41
Identities = 83/176 (47%), Positives = 117/176 (66%)
Frame = +3
Query: 474 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 653
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 304 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 362
Query: 654 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSG 833
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G
Sbjct: 363 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 422
Query: 834 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
G SE + T+ +LL ++DGF T N+ ++ TNR DILD ALLRPGR DR+I PP
Sbjct: 423 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 478
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,318,814
Number of extensions: 1127590
Number of successful extensions: 3955
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 3913
Number of HSP's successfully gapped: 61
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]. 560 e-162
Alignment gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]. 274 9e-74
Alignment gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]. 266 1e-71
Alignment gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul... 260 3e-70
Alignment gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu... 256 2e-68
Alignment gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu... 246 3e-65
Alignment gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform... 169 3e-42
Alignment gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ... 169 3e-42
Alignment gi|NP_081406.1| AFG3-like protein 2 [Mus musculus]. 164 8e-41
Alignment gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ... 162 5e-40
>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
Length = 406
Score = 560 bits (1442), Expect(2) = e-162
Identities = 291/320 (90%), Positives = 292/320 (91%)
Frame = +3
Query: 42 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 221
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 222 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 401
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 402 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 581
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 582 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 761
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 762 HAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 941
HAPSIIFMDEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 300
Query: 942 LDSALLRPGRIDRKIDFHPP 1001
LDSALLRPGRIDRKI+F PP
Sbjct: 301 LDSALLRPGRIDRKIEFPPP 320
Score = 31.6 bits (70), Expect(2) = e-162
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 317 FPPPNEEARLDILKI 331
>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
Length = 440
Score = 274 bits (700), Expect = 9e-74
Identities = 131/214 (61%), Positives = 169/214 (78%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
Length = 475
Score = 266 bits (681), Expect = 1e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 152 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 211
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 212 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 271
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 272 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 331
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 332 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 388
>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
Length = 389
Score = 260 bits (665), Expect(2) = 3e-70
Identities = 135/282 (47%), Positives = 179/282 (63%)
Frame = +3
Query: 165 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 344
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 26 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 85
Query: 345 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 524
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 86 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 145
Query: 525 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 704
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 146 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 205
Query: 705 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLD 884
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 206 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 265
Query: 885 GFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
GF+ +K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 266 GFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 307
Score = 23.9 bits (50), Expect(2) = 3e-70
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 998 PHEKARLDILKI 1033
P+E+ARLDILKI
Sbjct: 304 PNEQARLDILKI 315
>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
Length = 418
Score = 256 bits (655), Expect = 2e-68
Identities = 137/319 (42%), Positives = 195/319 (61%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXXXXXX 233
GPE +LE+ + Q L +E + + D+ +NL++ E ++
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLV-- 88
Query: 234 XXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLH 413
+G+ + A+D+ +V + PN VAL S L
Sbjct: 89 --------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALV 140
Query: 414 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 593
+LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI P+
Sbjct: 141 DVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPR 200
Query: 594 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 773
GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+AP+
Sbjct: 201 GVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPA 260
Query: 774 IIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 953
IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD A
Sbjct: 261 IIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPA 320
Query: 954 LLRPGRIDRKIDFHPPTRR 1010
LLRPGR+DRKI+F P RR
Sbjct: 321 LLRPGRLDRKIEFPLPDRR 339
>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
Length = 442
Score = 246 bits (627), Expect = 3e-65
Identities = 123/211 (58%), Positives = 154/211 (72%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 150 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 209
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 210 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 269
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+ +
Sbjct: 270 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 329
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
KVI ATNR+DILD ALLR GR+DRKI+F P
Sbjct: 330 KVIAATNRVDILDPALLRSGRLDRKIEFPMP 360
>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
Length = 893
Score = 169 bits (428), Expect = 3e-42
Identities = 86/189 (45%), Positives = 124/189 (65%), Gaps = 2/189 (1%)
Frame = +3
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
N + P + VP+ ++ IGGL+ ++K+ +E P+KHP+ F +GI PKGVLL
Sbjct: 607 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLL 666
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 667 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 726
Query: 786 DEIDSIGSSRLERG--SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 959
DE+D++ +ERG SG + R + +LL ++DG E KN+ V+ ATNR D +D AL+
Sbjct: 727 DELDALA---VERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALM 783
Query: 960 RPGRIDRKI 986
RPGRIDR I
Sbjct: 784 RPGRIDRII 792
Score = 155 bits (392), Expect = 5e-38
Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 4/178 (2%)
Frame = +3
Query: 480 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 659
TY+MIGGL+ Q+K I+E+IELP+K PELF++ GI P+G+LLYGPPGTGKT++ARAVA+
Sbjct: 351 TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410
Query: 660 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGD 839
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 411 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 466
Query: 840 SEVQ-RTMLELLNQLDGFEATKN---IKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
SEV+ R + LL +DG + + + V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 467 SEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIP 524
>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
Length = 892
Score = 169 bits (428), Expect = 3e-42
Identities = 86/189 (45%), Positives = 124/189 (65%), Gaps = 2/189 (1%)
Frame = +3
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
N + P + VP+ ++ IGGL+ ++K+ +E P+KHP+ F +GI PKGVLL
Sbjct: 606 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLL 665
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 666 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 725
Query: 786 DEIDSIGSSRLERG--SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 959
DE+D++ +ERG SG + R + +LL ++DG E KN+ V+ ATNR D +D AL+
Sbjct: 726 DELDALA---VERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALM 782
Query: 960 RPGRIDRKI 986
RPGRIDR I
Sbjct: 783 RPGRIDRII 791
Score = 155 bits (392), Expect = 5e-38
Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 4/178 (2%)
Frame = +3
Query: 480 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 659
TY+MIGGL+ Q+K I+E+IELP+K PELF++ GI P+G+LLYGPPGTGKT++ARAVA+
Sbjct: 350 TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409
Query: 660 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGD 839
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 410 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 465
Query: 840 SEVQ-RTMLELLNQLDGFEATKN---IKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
SEV+ R + LL +DG + + + V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 466 SEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIP 523
>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
Length = 802
Score = 164 bits (416), Expect = 8e-41
Identities = 83/176 (47%), Positives = 117/176 (66%)
Frame = +3
Query: 474 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVA 653
D ++ + G ++ EI E + +K+P+ ++ LG PKG +L GPPGTGKTLLA+A A
Sbjct: 303 DVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATA 361
Query: 654 HHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSG 833
+ FI VSGSE ++ F+G G VR+LF +AR++AP I+F+DEID++G R G
Sbjct: 362 GEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFIDEIDAVGRKRGRGNFG 421
Query: 834 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
G SE + T+ +LL ++DGF T N+ ++ TNR DILD ALLRPGR DR+I PP
Sbjct: 422 GQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPGRFDRQIFIGPP 477
>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
Length = 806
Score = 162 bits (409), Expect = 5e-40
Identities = 79/176 (44%), Positives = 114/176 (64%)
Frame = +3
Query: 459 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 638
V +VP T+E IGGL+ +E++E+++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 639 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 818
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 819 ERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKI 986
G R + ++L ++DG KN+ +I ATNR DI+D A+LRPGR+D+ I
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 157 bits (398), Expect = 1e-38
Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +3
Query: 462 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 641
E + + Y+ IGG KQ+ +IKE++ELP++HP LF+A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 642 RAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLE 821
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R E
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-E 314
Query: 822 RGSGGDSEVQRTML-ELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHP 998
+ G EV+R ++ +LL +DG + ++ V+ ATNR + +D AL R GR DR++D
Sbjct: 315 KTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 999 P 1001
P
Sbjct: 372 P 372
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,848,141
Number of extensions: 936529
Number of successful extensions: 3275
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3237
Number of HSP's successfully gapped: 47
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]. 560 e-162
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 274 7e-74
Alignment gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4... 274 7e-74
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 266 1e-71
Alignment gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7... 266 1e-71
Alignment gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1... 260 2e-70
Alignment gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease... 256 2e-68
Alignment gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6... 246 2e-65
Alignment gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc... 167 1e-41
Alignment gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ... 160 8e-40
>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
Length = 406
Score = 560 bits (1442), Expect(2) = e-162
Identities = 291/320 (90%), Positives = 292/320 (91%)
Frame = +3
Query: 42 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVXXXX 221
MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKV
Sbjct: 1 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 60
Query: 222 XXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDS 401
GSYVGEVVRAMDKKKVLVKVHPEGKF TPNCRVALRNDS
Sbjct: 61 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 120
Query: 402 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 581
YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI
Sbjct: 121 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
Query: 582 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 761
AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE
Sbjct: 181 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 240
Query: 762 HAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 941
HAPSIIFMDEIDSIGSSRLE GSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI
Sbjct: 241 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 300
Query: 942 LDSALLRPGRIDRKIDFHPP 1001
LDSALLRPGRIDRKI+F PP
Sbjct: 301 LDSALLRPGRIDRKIEFPPP 320
Score = 31.6 bits (70), Expect(2) = e-162
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 989 FPPPHEKARLDILKI 1033
FPPP+E+ARLDILKI
Sbjct: 317 FPPPNEEARLDILKI 331
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
Length = 367
Score = 274 bits (700), Expect = 7e-74
Identities = 131/214 (61%), Positives = 169/214 (78%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 73 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 132
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 133 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 192
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++
Sbjct: 193 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 252
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 253 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 286
>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
Length = 440
Score = 274 bits (700), Expect = 7e-74
Identities = 131/214 (61%), Positives = 169/214 (78%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P C V L + + + +L + DPLV++M VEK P TY IGGLD QI+EIKE +ELP+
Sbjct: 146 PGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPL 205
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
HPE +E +GI PKGV+LYGPPGTGKTLLA+AVA+ T TF+RV GSEL+QK++G+G +
Sbjct: 206 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 265
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VRELF +A EHAPSI+F+DEID+IG+ R + SGG+ E+QRTMLELLNQLDGF++ ++
Sbjct: 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDV 325
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
KVIMATNRI+ LD AL+RPGRIDRKI+F P +
Sbjct: 326 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 266 bits (681), Expect = 1e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 157 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 216
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 217 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 276
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 277 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 336
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 337 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 393
>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 433
Score = 266 bits (681), Expect = 1e-71
Identities = 135/237 (56%), Positives = 168/237 (70%)
Frame = +3
Query: 291 KVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKV 470
K ++ V KF RV + + Y +H LP K+DP V++M VE+
Sbjct: 110 KYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 169
Query: 471 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAV 650
PD TY +GG +QI++++EV+E P+ HPE F LGI PKGVLL+GPPGTGKTL ARAV
Sbjct: 170 PDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAV 229
Query: 651 AHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGS 830
A+ TD FIRV GSELVQK++GEGARMVRELF MAR +IF DEID+IG +R + G+
Sbjct: 230 ANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGA 289
Query: 831 GGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
GGD+EVQRTMLEL+NQLDGF+ NIKV+MATNR D LD AL+RPGR+DRKI+F P
Sbjct: 290 GGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLP 346
>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
Length = 403
Score = 260 bits (665), Expect(2) = 2e-70
Identities = 135/282 (47%), Positives = 179/282 (63%)
Frame = +3
Query: 165 LRRLQAQRNELNAKVXXXXXXXXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXX 344
L+ L+ Q EL + G VGEV++ + ++K +VK ++
Sbjct: 40 LKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRR 99
Query: 345 XXXXXXXTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 524
P RVAL + T+ + LP +VDPLV M E + +Y IGGL +QI+E+
Sbjct: 100 QLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIREL 159
Query: 525 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 704
+EVIELP+ +PELF+ +GI PKG LLYGPPGTGKTLLARAVA DC F++V S +V
Sbjct: 160 REVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVD 219
Query: 705 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLD 884
K+IGE AR++RE+F AR+H P IIFMDEID+IG R G+ D E+QRT++ELLNQ+D
Sbjct: 220 KYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMD 279
Query: 885 GFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHPPTRR 1010
GF+ +K+IMATNR D LD ALLRPGR+DRKI P +
Sbjct: 280 GFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQ 321
Score = 23.9 bits (50), Expect(2) = 2e-70
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +2
Query: 998 PHEKARLDILKI 1033
P+E+ARLDILKI
Sbjct: 318 PNEQARLDILKI 329
>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
6B-like [Sus scrofa].
Length = 418
Score = 256 bits (653), Expect = 2e-68
Identities = 139/321 (43%), Positives = 196/321 (61%), Gaps = 2/321 (0%)
Frame = +3
Query: 54 GPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRR--LQAQRNELNAKVXXXXXX 227
GPE +LE+ + Q L +E + + D+ +NL++ L AQ +
Sbjct: 31 GPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQXEVKRIQSIPLV-- 88
Query: 228 XXXXXXXGSYVGEVVRAMDKKKVLVKVHPEGKFXXXXXXXXXXXXXTPNCRVALRNDSYT 407
+G+ + A+D+ +V + PN VAL S
Sbjct: 89 ----------IGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNA 138
Query: 408 LHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQ 587
L +LP + D + ++ ++ PD Y IGG+D Q +E++E +ELP+ H EL++ +GI
Sbjct: 139 LVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDP 198
Query: 588 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 767
P+GVL+YGPPG GKT+LA+AVAHHT FIRV GSE VQK++GEG RMVR++F +A+E+A
Sbjct: 199 PRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 258
Query: 768 PSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 947
P+IIF+DEID+I + R + +G D EVQR +LELLNQ+DGF+ N+KVIMATNR D LD
Sbjct: 259 PAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
Query: 948 SALLRPGRIDRKIDFHPPTRR 1010
ALLRPGR+DRKI+F P RR
Sbjct: 319 PALLRPGRLDRKIEFPLPDRR 339
>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
Length = 439
Score = 246 bits (627), Expect = 2e-65
Identities = 123/211 (58%), Positives = 154/211 (72%)
Frame = +3
Query: 369 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 548
P V + DSY + + LP + D V M V++ P Y IGGLDKQI+E+ E I LP+
Sbjct: 147 PGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPM 206
Query: 549 KHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGAR 728
H E FE LGI PKGVL+YGPPGTGKTLLARA A T TF++++G +LVQ FIG+GA+
Sbjct: 207 NHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAK 266
Query: 729 MVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGDSEVQRTMLELLNQLDGFEATKNI 908
+VR+ F +A+E APSIIF+DE+D+IG+ R + GD EVQRTMLELLNQLDGF+ +
Sbjct: 267 LVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQV 326
Query: 909 KVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
KVI ATNR+DILD ALLR GR+DRKI+F P
Sbjct: 327 KVIAATNRVDILDPALLRSGRLDRKIEFPMP 357
>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
Length = 887
Score = 167 bits (422), Expect = 1e-41
Identities = 85/189 (44%), Positives = 123/189 (65%), Gaps = 2/189 (1%)
Frame = +3
Query: 426 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLL 605
N + P + VP+ ++ IGGL+ ++K+ +E P+KHPE F +GI PKGVLL
Sbjct: 601 NDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLL 660
Query: 606 YGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFM 785
YGPPG KT++A+A+A+ + F+ + G EL+ K++GE R VRE+F AR APSIIF
Sbjct: 661 YGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFF 720
Query: 786 DEIDSIGSSRLERG--SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALL 959
DE+D++ +ERG SG + R + +LL +DG E K++ ++ ATNR D +D AL+
Sbjct: 721 DELDALA---VERGSSSGAGNVADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALM 777
Query: 960 RPGRIDRKI 986
RPGRIDR I
Sbjct: 778 RPGRIDRII 786
Score = 158 bits (400), Expect = 4e-39
Identities = 84/178 (47%), Positives = 120/178 (67%), Gaps = 4/178 (2%)
Frame = +3
Query: 480 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 659
TY+MIGGL+ Q+KEI+E+IELP+K PELF++ GI+ P+GVLLYGPPGTGKT++ARAVA+
Sbjct: 345 TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANE 404
Query: 660 TDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLERGSGGD 839
++G E++ KF GE +R++F A PSIIF+DE+D++ R G
Sbjct: 405 VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKR----EGAQ 460
Query: 840 SEVQ-RTMLELLNQLDGFEATKN---IKVIMATNRIDILDSALLRPGRIDRKIDFHPP 1001
+EV+ R + LL +DG + + + V+ ATNR LD+AL RPGR D++I+ P
Sbjct: 461 NEVEKRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVP 518
>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
Length = 806
Score = 160 bits (406), Expect = 8e-40
Identities = 78/176 (44%), Positives = 114/176 (64%)
Frame = +3
Query: 459 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 638
V +VP T+E IGGL+ +E++++++ PV+HP+ F G+ KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 639 ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 818
A+A+A+ FI + G EL+ + GE VRE+F AR+ AP ++F DE+DSI +R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 819 ERGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKI 986
G R + ++L ++DG KN+ +I ATNR DI+D A+LRPGR+D+ I
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643
Score = 157 bits (398), Expect = 7e-39
Identities = 82/181 (45%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +3
Query: 462 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLA 641
E + + Y+ IGG KQ+ +IKE++ELP++HP LF+A+G+ P+G+LLYGPPGTGKTL+A
Sbjct: 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255
Query: 642 RAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLE 821
RAVA+ T F ++G E++ K GE +R+ F A ++AP+IIF+DE+D+I R E
Sbjct: 256 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-E 314
Query: 822 RGSGGDSEVQRTML-ELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIDFHP 998
+ G EV+R ++ +LL +DG + ++ V+ ATNR + +D AL R GR DR++D
Sbjct: 315 KTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
Query: 999 P 1001
P
Sbjct: 372 P 372
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,135,741
Number of extensions: 724803
Number of successful extensions: 2530
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 40
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002102
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 436 e-119
>Sscrofa_Chr12
|| Length = 63588571
Score = 436 bits (220), Expect = e-119
Identities = 229/232 (98%)
Strand = Plus / Minus
Query: 363 gtgacacccaactgccgggtggctctcagaaatgacagctacactttgcacaagatcctg 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 15093981 gtgacacccaactgccgggtggctctcagaaatgatagctacactttgcacaagatcctg 15093922
Query: 423 cccaacaaggtagacccactggtgtcactgatgatggtggagaaagtgccagattcaact 482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093921 cccaacaaggtagatccactggtgtcactgatgatggtggagaaagtgccagattcaact 15093862
Query: 483 tacgagatgattggtggactggacaagcagatcaaggagatcaaagaagtgatcgagctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093861 tacgagatgattggtggactggacaagcagatcaaggagatcaaagaagtgatcgagctg 15093802
Query: 543 cccgtgaagcatcctgagctctttgaagcgctgggcattgcacagcccaagg 594
|||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 15093801 cccgtgaagcatcctgagctgtttgaagcgctgggcattgcacagcccaagg 15093750
Score = 379 bits (191), Expect = e-102
Identities = 194/195 (99%)
Strand = Plus / Minus
Query: 719 aggggcaaggatggtgagggagctgtttgtcatggcccgagaacacgctccatctatcat 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093213 aggggcaaggatggtgagggagctgtttgtcatggcccgagaacacgctccatctatcat 15093154
Query: 779 cttcatggacgaaatcgactccattggctcctcgcggctggaaaggggctctggagggga 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 15093153 cttcatggacgaaatcgactccattggctcctcgcggctggaagggggctctggagggga 15093094
Query: 839 cagtgaagtccagcgcacgatgctggagctgctcaaccagctggacggcttcgaggccac 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093093 cagtgaagtccagcgcacgatgctggagctgctcaaccagctggacggcttcgaggccac 15093034
Query: 899 caaaaatatcaaggt 913
|||||||||||||||
Sbjct: 15093033 caaaaatatcaaggt 15093019
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 592 agggagtgctgctatacggacccccaggcactgggaagacactgctggcccgagctgtgg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093434 agggagtgctgctatacggacccccaggcactgggaagacactgctggcccgagctgtgg 15093375
Query: 652 cccatcatacagactgcacctttattcgcgtctctggctctgagctggtacagaaattca 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15093374 cccatcatacagactgcacctttattcgcgtctctggctctgagctggtacagaaattca 15093315
Query: 712 ttggggaagg 721
||||||||||
Sbjct: 15093314 ttggggaagg 15093305
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 206 agttcgcctgttgcgagaggagctacagctactgcaagaacagggctcctatgtggggga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094378 agttcgcctgttgcgagaggagctacagctactgcaagaacagggctcctatgtggggga 15094319
Query: 266 agtagtccgggccatggacaagaaaaaagtgttggttaaggt 307
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094318 agtagtccgggccatggacaagaaaaaagtgttggttaaggt 15094277
Score = 159 bits (80), Expect = 4e-36
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 910 aggttatcatggccactaataggattgacatcctggactcggcgctgctccgcccagggc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15092933 aggttatcatggccactaataggattgacatcctggactcggcgctgctccgcccagggc 15092874
Query: 970 gcatcgacagaaaaattgatttcc 993
||||||||||||||||||| ||||
Sbjct: 15092873 gcatcgacagaaaaattgaattcc 15092850
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 63 cagatggagctggaagaggggaaggcaggcagtggactccgccagtattatctgtccaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15095944 cagatggagctggaagaggggaaggcaggcagtggactccgccagtattatctgtccaag 15095885
Query: 123 attgaagaactccag 137
|||||||||||||||
Sbjct: 15095884 attgaagaactccag 15095870
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 135 cagctgattgtgaatgacaagagccagaatctccgcaggctgcaagcacagaggaatgag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094878 cagctgattgtgaatgacaagagccagaatctccgcaggctgcaagcacagaggaatgag 15094819
Query: 195 cttaatgcaaaag 207
|||||||||||||
Sbjct: 15094818 cttaatgcaaaag 15094806
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1 aaagcggctctgatgccgggggcctccgcggaagagggaagatggcgcttgacgggcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15096525 aaagcggctctgatgccgggggcctccgcggaagagggaagatggcgcttgacgggcctg 15096466
Query: 61 agcag 65
|||||
Sbjct: 15096465 agcag 15096461
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 304 aggtgcatcccgagggcaagtttgtcgtagacgtggacaagaacatcgacatcaatgatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15094120 aggtgcatcccgagggcaagtttgtcgtagacgtggacaagaacatcgacatcaatgatg 15094061
Query: 364 tga 366
|||
Sbjct: 15094060 tga 15094058
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,178,663
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 9
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)