Animal-Genome cDNA 20110601C-002115


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].             607   e-173
Alignment   gi|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taur...   479   e-135
Alignment   gi|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [B...   468   e-131
Alignment   gi|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].             417   e-116
Alignment   gi|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].             409   e-114
Alignment   gi|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos...   330   4e-90

>ref|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].
          Length = 462

 Score =  607 bits (1565), Expect = e-173
 Identities = 317/447 (70%), Positives = 318/447 (71%)
 Frame = +2

Query: 539  MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 718
            MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN
Sbjct: 1    MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 60

Query: 719  PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 898
            PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH
Sbjct: 61   PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 120

Query: 899  IGVSVKELDLYLAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTE 1078
            IGVSVKELDLYLAYFVH                 IKDQPENGHLGFQDSFVTSGVFSVTE
Sbjct: 121  IGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTE 180

Query: 1079 LVRVSQTPIAAGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDS 1258
            LVRVSQTPIAAGTGPNF              PGAM                  VEDEMDS
Sbjct: 181  LVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDS 240

Query: 1259 PGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFT 1438
            PGEEPFYT              WHEVEPGMPSPTTL                  LGTAFT
Sbjct: 241  PGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFT 300

Query: 1439 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 1618
            QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA
Sbjct: 301  QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 360

Query: 1619 GQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGA 1798
            GQQAGQVGFLNPNGSSQGKVHN                                STEGGA
Sbjct: 361  GQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGA 420

Query: 1799 ASPTSPILVPGIKVAASHHPPDRPPDP 1879
            ASPTSP         A+      P DP
Sbjct: 421  ASPTSPTYSTPSTSPANRFVSVGPRDP 447


>ref|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taurus].
          Length = 510

 Score =  479 bits (1233), Expect = e-135
 Identities = 263/429 (61%), Positives = 290/429 (67%), Gaps = 9/429 (2%)
 Frame = +2

Query: 419  AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
            A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 16   ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 75

Query: 599  KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
            KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 76   KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 135

Query: 779  RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
            RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH   
Sbjct: 136  RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 195

Query: 959  XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
                          IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF   
Sbjct: 196  SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 254

Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
                         A+                    D  EM+SP ++ FY  T        
Sbjct: 255  DLESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 314

Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
                   ++V+ G   P +L                     AFT H  PV+ G R  SP 
Sbjct: 315  SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 371

Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLN 1651
            AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     
Sbjct: 372  ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ----- 426

Query: 1652 PNGSSQGKV 1678
            PNGS QGKV
Sbjct: 427  PNGSGQGKV 435


>ref|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [Bos taurus].
          Length = 440

 Score =  468 bits (1203), Expect = e-131
 Identities = 254/413 (61%), Positives = 281/413 (68%), Gaps = 9/413 (2%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                       A+                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 308  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364

Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 365  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].
          Length = 428

 Score =  417 bits (1071), Expect = e-116
 Identities = 240/428 (56%), Positives = 272/428 (63%), Gaps = 17/428 (3%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68   VKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRER 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
                             DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTG
Sbjct: 188  DAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244

Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
            PNF              P   G                    +E+++D+     +YT   
Sbjct: 245  PNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301

Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
                       W E +E G+ SP                     L ++FTQHHRPVI   
Sbjct: 302  SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360

Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
            +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C  A Q
Sbjct: 361  SGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQ 419

Query: 1625 QAGQVGFL 1648
            Q G   +L
Sbjct: 420  QPGPSWYL 427


>ref|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].
          Length = 420

 Score =  409 bits (1051), Expect = e-114
 Identities = 231/414 (55%), Positives = 257/414 (62%), Gaps = 11/414 (2%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68   IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
                             D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF  
Sbjct: 188  DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241

Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
                          G                    +++ M+      FY           
Sbjct: 242  GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
                WHE +  M SPTT+                    + F QHH P I G   S  +T 
Sbjct: 299  GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358

Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
                PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q
Sbjct: 359  TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 412


>ref|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos taurus].
          Length = 189

 Score =  330 bits (845), Expect = 4e-90
 Identities = 160/177 (90%), Positives = 166/177 (93%)
 Frame = +2

Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
           +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8   LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67

Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
           VKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68  VKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127

Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 946
           WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFV 184


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 90,304,129
Number of extensions: 2494907
Number of successful extensions: 9214
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9148
Number of HSP's successfully gapped: 9
Length of query: 780
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 670
Effective length of database: 14,041,694
Effective search space: 9407934980
Effective search space used: 9407934980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (...   688   0.0  
Alignment   gi|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (...   476   e-134
Alignment   gi|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   468   e-131
Alignment   gi|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   467   e-131
Alignment   gi|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   466   e-131
Alignment   gi|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   457   e-128
Alignment   gi|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   449   e-126
Alignment   gi|XP_867203.1| PREDICTED: similar to nuclear factor I/X isofor...   430   e-120
Alignment   gi|XP_867192.1| PREDICTED: similar to nuclear factor I/X isofor...   430   e-120
Alignment   gi|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (...   421   e-117

>ref|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (Nuclear factor 1/A)
            (NF1-A) (NFI-A) (NF-I/A) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
          Length = 507

 Score =  688 bits (1776), Expect = 0.0
 Identities = 355/485 (73%), Positives = 356/485 (73%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 8    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 67

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 68   KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 127

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH     
Sbjct: 128  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 187

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF     
Sbjct: 188  QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1324
                     PGAM                  VEDEMDSPGEEPFYT              
Sbjct: 248  ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 307

Query: 1325 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1504
            WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 308  WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 367

Query: 1505 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1684
            FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 368  FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 427

Query: 1685 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPPD 1864
                                            STEGGAASPTSP         A+     
Sbjct: 428  PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 487

Query: 1865 RPPDP 1879
             P DP
Sbjct: 488  GPRDP 492


>ref|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (Nuclear factor 1/X)
            (NF1-X) (NFI-X) (NF-I/X) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
            familiaris].
          Length = 501

 Score =  476 bits (1226), Expect = e-134
 Identities = 261/427 (61%), Positives = 288/427 (67%), Gaps = 9/427 (2%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 308  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364

Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1657
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     PN
Sbjct: 365  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 419

Query: 1658 GSSQGKV 1678
            GS QGKV
Sbjct: 420  GSGQGKV 426


>ref|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 7 [Canis familiaris].
          Length = 433

 Score =  468 bits (1204), Expect = e-131
 Identities = 254/414 (61%), Positives = 281/414 (67%), Gaps = 9/414 (2%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1    MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH    
Sbjct: 121  LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF    
Sbjct: 181  GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
                         +                    D  EM+SP ++ FY  T         
Sbjct: 240  LESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299

Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
                  ++V+ G   P +L                     AFT H  PV+ G R  SP A
Sbjct: 300  QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356

Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            T S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 357  TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410


>ref|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 6 [Canis familiaris].
          Length = 457

 Score =  467 bits (1202), Expect = e-131
 Identities = 254/415 (61%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
 Frame = +2

Query: 419  AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
            A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 24   ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 83

Query: 599  KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
            KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 84   KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 143

Query: 779  RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
            RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH   
Sbjct: 144  RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 203

Query: 959  XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
                          IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF   
Sbjct: 204  SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 262

Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
                          +                    D  EM+SP ++ FY  T        
Sbjct: 263  DLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 322

Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
                   ++V+ G   P +L                     AFT H  PV+ G R  SP 
Sbjct: 323  SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 379

Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 380  ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 434


>ref|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 8 [Canis familiaris].
          Length = 440

 Score =  466 bits (1199), Expect = e-131
 Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 308  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364

Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 365  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 3 [Canis familiaris].
          Length = 434

 Score =  457 bits (1176), Expect = e-128
 Identities = 249/412 (60%), Positives = 277/412 (67%), Gaps = 8/412 (1%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
                 ++V+ G   P +L                     AFT H  PV+ G R +     
Sbjct: 308  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPA----- 359

Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 360  SALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 411


>ref|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 2 [Canis familiaris].
          Length = 445

 Score =  449 bits (1154), Expect = e-126
 Identities = 249/419 (59%), Positives = 278/419 (66%), Gaps = 15/419 (3%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH---XX 955
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPGSW 188

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHL---GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1126
                           +  +P   HL    FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 189  EEQDGNPSTEMGCSLLSSKP--AHLEVTDFQDCFVTSGVWNVTELVRVSQTPVATASGPN 246

Query: 1127 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1294
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 247  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 306

Query: 1295 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1471
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 307  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 363

Query: 1472 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 364  GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 422


>ref|XP_867203.1| PREDICTED: similar to nuclear factor I/X isoform 5 [Canis
            familiaris].
          Length = 399

 Score =  430 bits (1106), Expect = e-120
 Identities = 241/412 (58%), Positives = 264/412 (64%), Gaps = 8/412 (1%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
                 ++V+ G P  T                                     AS    P
Sbjct: 308  SSGWPNDVDAGSPRAT-------------------------------------ASALHFP 330

Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            ST       IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 331  ST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 376


>ref|XP_867192.1| PREDICTED: similar to nuclear factor I/X isoform 4 [Canis
            familiaris].
          Length = 403

 Score =  430 bits (1106), Expect = e-120
 Identities = 241/412 (58%), Positives = 264/412 (64%), Gaps = 8/412 (1%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 13   DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 72

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 73   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 132

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 133  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 192

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 193  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 251

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 252  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 311

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
                 ++V+ G P  T                                     AS    P
Sbjct: 312  SSGWPNDVDAGSPRAT-------------------------------------ASALHFP 334

Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            ST       IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 335  ST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 380


>ref|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (Nuclear factor 1/C)
            (NF1-C) (NFI-C) (NF-I/C) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
          Length = 569

 Score =  421 bits (1083), Expect = e-117
 Identities = 260/514 (50%), Positives = 297/514 (57%), Gaps = 18/514 (3%)
 Frame = +2

Query: 392  KFLTYSFYIAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 571
            + LT       DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKD
Sbjct: 63   RLLTSVLSCPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKD 122

Query: 572  ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 751
            ELL EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRID
Sbjct: 123  ELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRID 182

Query: 752  CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 931
            CLRQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLY
Sbjct: 183  CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLY 242

Query: 932  LAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQ 1096
            LAYFV                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+
Sbjct: 243  LAYFVRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSR 299

Query: 1097 TPIAAGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGE 1267
            TP+  GTGPNF              P   G                    +E+++D+   
Sbjct: 300  TPVVTGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPG 359

Query: 1268 EPFYTXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQH 1444
              +YT              W E +E G+ SP                     L ++FTQH
Sbjct: 360  GDYYT---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFHSPSPQDSPRL-SSFTQH 415

Query: 1445 HRPVI---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQ 1600
            HRPVI   +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V 
Sbjct: 416  HRPVIAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVS 474

Query: 1601 LVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1780
            L C  A QQ G +     NGS Q K+ +                                
Sbjct: 475  LACDPASQQPGPL-----NGSGQLKMSS------HCLSAQMLAPPPPGLPRLALPPATKP 523

Query: 1781 STEGGAASPTSP-ILVPGIKVAASHHPPDRPPDP 1879
            ++EGG+ SPTSP    PG   A        P DP
Sbjct: 524  TSEGGSTSPTSPSYSTPGTSPANRSFVGLGPRDP 557


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 94,262,684
Number of extensions: 2574786
Number of successful extensions: 10781
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10643
Number of HSP's successfully gapped: 27
Length of query: 780
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 669
Effective length of database: 15,174,208
Effective search space: 10151545152
Effective search space used: 10151545152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].    741   0.0  
Alignment   gi|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapi...   690   0.0  
Alignment   gi|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapi...   689   0.0  
Alignment   gi|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapi...   689   0.0  
Alignment   gi|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].              468   e-131
Alignment   gi|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].    429   e-120
Alignment   gi|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].    420   e-117
Alignment   gi|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapi...   414   e-115
Alignment   gi|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].    409   e-114
Alignment   gi|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapi...   408   e-113

>ref|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].
          Length = 498

 Score =  741 bits (1914), Expect = 0.0
 Identities = 376/492 (76%), Positives = 377/492 (76%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67   VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH  
Sbjct: 127  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
                           IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF  
Sbjct: 187  DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246

Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
                        PGAM                  VEDEMDSPGEEPFYT           
Sbjct: 247  SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306

Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
               WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307  SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
            TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367  TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426

Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
            VHN                                STEGGAASPTSPILVPGIKVAASHH
Sbjct: 427  VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIKVAASHH 486

Query: 1856 PPDRPPDPFSTL 1891
            PPDRPPDPFSTL
Sbjct: 487  PPDRPPDPFSTL 498


>ref|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapiens].
          Length = 501

 Score =  690 bits (1781), Expect = 0.0
 Identities = 356/486 (73%), Positives = 357/486 (73%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 1    MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH    
Sbjct: 121  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF    
Sbjct: 181  SQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 240

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
                      PGAM                  VEDEMDSPGEEPFYT             
Sbjct: 241  LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 300

Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
             WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 301  GWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 360

Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
            HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 361  HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 420

Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
            N                                STEGGAASPTSP         A+    
Sbjct: 421  NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 480

Query: 1862 DRPPDP 1879
              P DP
Sbjct: 481  VGPRDP 486


>ref|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapiens].
          Length = 554

 Score =  689 bits (1778), Expect = 0.0
 Identities = 355/488 (72%), Positives = 357/488 (73%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 52   LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 111

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 112  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 171

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH  
Sbjct: 172  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 231

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
                           IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF  
Sbjct: 232  DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 291

Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
                        PGAM                  VEDEMDSPGEEPFYT           
Sbjct: 292  SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 351

Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
               WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 352  SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 411

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
            TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 412  TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 471

Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
            VHN                                STEGGAASPTSP         A+  
Sbjct: 472  VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 531

Query: 1856 PPDRPPDP 1879
                P DP
Sbjct: 532  VSVGPRDP 539


>ref|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapiens].
          Length = 509

 Score =  689 bits (1778), Expect = 0.0
 Identities = 355/488 (72%), Positives = 357/488 (73%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67   VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH  
Sbjct: 127  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
                           IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF  
Sbjct: 187  DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246

Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
                        PGAM                  VEDEMDSPGEEPFYT           
Sbjct: 247  SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306

Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
               WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307  SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
            TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367  TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426

Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
            VHN                                STEGGAASPTSP         A+  
Sbjct: 427  VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 486

Query: 1856 PPDRPPDP 1879
                P DP
Sbjct: 487  VSVGPRDP 494


>ref|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].
          Length = 441

 Score =  468 bits (1203), Expect = e-131
 Identities = 256/421 (60%), Positives = 284/421 (67%), Gaps = 10/421 (2%)
 Frame = +2

Query: 404  YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
            YS Y +  DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2    YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61

Query: 581  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
             EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62   GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121

Query: 761  QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
            QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122  QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181

Query: 941  FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
            FVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +G
Sbjct: 182  FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240

Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
            PNF                 +                    D  EM+SP ++ FY  T  
Sbjct: 241  PNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGR 300

Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
                         ++V+ G   P +L                     AFT H  PV+ G 
Sbjct: 301  SPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGV 357

Query: 1469 R-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1633
            R  SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  G
Sbjct: 358  RPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 417

Query: 1634 Q 1636
            Q
Sbjct: 418  Q 418


>ref|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].
          Length = 499

 Score =  429 bits (1103), Expect = e-120
 Identities = 260/501 (51%), Positives = 297/501 (59%), Gaps = 17/501 (3%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPEVK
Sbjct: 1    MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV     
Sbjct: 121  LDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDA 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1126
                           DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTGPN
Sbjct: 181  EQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPN 237

Query: 1127 FXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1297
            F              P   G                    +E+++D+     +YT     
Sbjct: 238  FSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT---SP 294

Query: 1298 XXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI---TG 1465
                     W E +E G+ SP                     L ++FTQHHRPVI   +G
Sbjct: 295  SSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVHSG 353

Query: 1466 PRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQA 1630
               SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C  A QQ 
Sbjct: 354  IARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQP 412

Query: 1631 GQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPT 1810
            G +     NGS Q K+ +                                ++EGGA SPT
Sbjct: 413  GPL-----NGSGQLKMPS----HCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPT 463

Query: 1811 SPILVPGIKVAASHHPPDRPP 1873
            SP          S+ PPD  P
Sbjct: 464  SP----------SYSPPDTSP 474


>ref|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].
          Length = 428

 Score =  420 bits (1080), Expect = e-117
 Identities = 241/428 (56%), Positives = 274/428 (64%), Gaps = 17/428 (3%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68   VKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRER 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
                             DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTG
Sbjct: 188  DAEQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244

Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
            PNF              P   G                    +E+++D+     +YT   
Sbjct: 245  PNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301

Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
                       W E +E G+ SP                     L ++FTQHHRPVI   
Sbjct: 302  SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360

Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
            +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C  A Q
Sbjct: 361  SGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQ 419

Query: 1625 QAGQVGFL 1648
            Q G   +L
Sbjct: 420  QPGPSWYL 427


>ref|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapiens].
          Length = 494

 Score =  414 bits (1064), Expect = e-115
 Identities = 239/434 (55%), Positives = 266/434 (61%), Gaps = 13/434 (2%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68   IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
                             D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF  
Sbjct: 188  DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241

Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
                          G                    +++ M+      FY           
Sbjct: 242  GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAA 298

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
                WHE +  M SPTT+                    + F QHH P I G   S  +T 
Sbjct: 299  GSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358

Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
                PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q +    
Sbjct: 359  TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414

Query: 1643 FLNPNGSSQ--GKV 1678
               PNGS Q  GKV
Sbjct: 415  --QPNGSGQVVGKV 426


>ref|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].
          Length = 420

 Score =  409 bits (1051), Expect = e-114
 Identities = 231/414 (55%), Positives = 257/414 (62%), Gaps = 11/414 (2%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68   IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
                             D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF  
Sbjct: 188  DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241

Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
                          G                    +++ M+      FY           
Sbjct: 242  GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAA 298

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
                WHE +  M SPTT+                    + F QHH P I G   S  +T 
Sbjct: 299  GSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358

Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
                PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q
Sbjct: 359  TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 412


>ref|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapiens].
          Length = 446

 Score =  408 bits (1049), Expect = e-113
 Identities = 231/411 (56%), Positives = 256/411 (62%), Gaps = 11/411 (2%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE+KQ
Sbjct: 37   DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQ 96

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 97   KWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRL 156

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V      
Sbjct: 157  DLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQDSG 216

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-XXXX 1141
                          D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF     
Sbjct: 217  QSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEI 270

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
                       G                    +++ M+      FY              
Sbjct: 271  PSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAAGSR 327

Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT---- 1489
             WHE +  M SPTT+                    + F QHH P I G   S  +T    
Sbjct: 328  TWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPP 387

Query: 1490 -PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
             PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q
Sbjct: 388  PPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 438


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 92,579,022
Number of extensions: 2536026
Number of successful extensions: 9893
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9816
Number of HSP's successfully gapped: 15
Length of query: 780
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 670
Effective length of database: 14,671,124
Effective search space: 9829653080
Effective search space used: 9829653080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus muscu...   687   0.0  
Alignment   gi|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].    686   0.0  
Alignment   gi|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus muscu...   619   e-177
Alignment   gi|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus muscu...   478   e-135
Alignment   gi|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus muscu...   468   e-131
Alignment   gi|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].    432   e-121
Alignment   gi|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].    418   e-116
Alignment   gi|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].    417   e-116
Alignment   gi|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus muscu...   412   e-115
Alignment   gi|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus muscu...   412   e-115

>ref|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus musculus].
          Length = 532

 Score =  687 bits (1774), Expect = 0.0
 Identities = 354/486 (72%), Positives = 357/486 (73%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 32   MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 91

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 92   QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 151

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH    
Sbjct: 152  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 211

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF    
Sbjct: 212  SQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 271

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
                      PGAM                  VEDEMDSPGEEPFYT             
Sbjct: 272  LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 331

Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
             WHEVEPG+PSP+TL                  LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 332  GWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 391

Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
            HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 392  HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 451

Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
            N                                STEGGAASPTSP         A+    
Sbjct: 452  NPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 511

Query: 1862 DRPPDP 1879
              P DP
Sbjct: 512  VGPRDP 517


>ref|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].
          Length = 509

 Score =  686 bits (1771), Expect = 0.0
 Identities = 353/488 (72%), Positives = 357/488 (73%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67   VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH  
Sbjct: 127  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
                           IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF  
Sbjct: 187  DSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246

Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
                        PGAM                  VEDEMDSPGEEPFYT           
Sbjct: 247  SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306

Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
               WHEVEPG+PSP+TL                  LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307  SSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
            TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367  TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426

Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
            VHN                                STEGGAASPTSP         A+  
Sbjct: 427  VHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 486

Query: 1856 PPDRPPDP 1879
                P DP
Sbjct: 487  VSVGPRDP 494


>ref|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus musculus].
          Length = 466

 Score =  619 bits (1596), Expect = e-177
 Identities = 328/488 (67%), Positives = 330/488 (67%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67   VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH  
Sbjct: 127  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
                           IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF  
Sbjct: 187  DSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246

Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
                        PGAM                  VEDEMDSPGEEPFYT           
Sbjct: 247  SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306

Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
               WHEVEP  P                                           HATPS
Sbjct: 307  SSGWHEVEPASP-------------------------------------------HATPS 323

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
            TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 324  TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 383

Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
            VHN                                STEGGAASPTSP         A+  
Sbjct: 384  VHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 443

Query: 1856 PPDRPPDP 1879
                P DP
Sbjct: 444  VSVGPRDP 451


>ref|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus musculus].
          Length = 494

 Score =  478 bits (1231), Expect = e-135
 Identities = 262/428 (61%), Positives = 289/428 (67%), Gaps = 9/428 (2%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1    MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH    
Sbjct: 121  LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF    
Sbjct: 181  GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
                         +                    D  EM+SP ++ FY  T         
Sbjct: 240  LESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299

Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
                  ++V+ G   P +L                     AFT H  PV+ G R  SP A
Sbjct: 300  QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356

Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNP 1654
            T S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     P
Sbjct: 357  TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----P 411

Query: 1655 NGSSQGKV 1678
            NGS QGKV
Sbjct: 412  NGSGQGKV 419


>ref|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus musculus].
          Length = 441

 Score =  468 bits (1203), Expect = e-131
 Identities = 256/421 (60%), Positives = 284/421 (67%), Gaps = 10/421 (2%)
 Frame = +2

Query: 404  YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
            YS Y +  DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2    YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61

Query: 581  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
             EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62   GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121

Query: 761  QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
            QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122  QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181

Query: 941  FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
            FVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +G
Sbjct: 182  FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240

Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
            PNF                 +                    D  EM+SP ++ FY  T  
Sbjct: 241  PNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGR 300

Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
                         ++V+ G   P +L                     AFT H  PV+ G 
Sbjct: 301  SPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGV 357

Query: 1469 R-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1633
            R  SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  G
Sbjct: 358  RPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 417

Query: 1634 Q 1636
            Q
Sbjct: 418  Q 418


>ref|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].
          Length = 400

 Score =  432 bits (1110), Expect = e-121
 Identities = 244/420 (58%), Positives = 268/420 (63%), Gaps = 9/420 (2%)
 Frame = +2

Query: 404  YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
            YS Y +  DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2    YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61

Query: 581  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
             EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62   GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121

Query: 761  QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
            QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122  QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181

Query: 941  FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
            FVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +G
Sbjct: 182  FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240

Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
            PNF                 +                    D  EM+SP ++ FY  T  
Sbjct: 241  PNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGR 300

Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
                         ++V+ G P  T                                    
Sbjct: 301  SPAAGSSQSSGWPNDVDAGSPRAT------------------------------------ 324

Query: 1469 RASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             AS    PST       IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 325  -ASALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 377


>ref|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].
          Length = 428

 Score =  418 bits (1074), Expect = e-116
 Identities = 241/428 (56%), Positives = 272/428 (63%), Gaps = 17/428 (3%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68   VKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVK+  C++P LCVQPHHIGV+VKELDLYLAYFV   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRER 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
                             DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTG
Sbjct: 188  DAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244

Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
            PNF              P   G                    +E+++D+     +YT   
Sbjct: 245  PNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301

Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
                       W E +E G+ SP                     L ++FTQHHRPVI   
Sbjct: 302  SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360

Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
            +G   SPH T S LHFP +PI+ Q    YF H AIRY    +PQ+ LK+ V L C  A Q
Sbjct: 361  SGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQ 419

Query: 1625 QAGQVGFL 1648
            Q G   +L
Sbjct: 420  QPGPSWYL 427


>ref|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].
          Length = 439

 Score =  417 bits (1072), Expect = e-116
 Identities = 240/423 (56%), Positives = 270/423 (63%), Gaps = 17/423 (4%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8    LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            VKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68   VKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERLVK+  C++P LCVQPHHIGV+VKELDLYLAYFV   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRER 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
                             DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTG
Sbjct: 188  DAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244

Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
            PNF              P   G                    +E+++D+     +YT   
Sbjct: 245  PNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301

Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
                       W E +E G+ SP                     L ++FTQHHRPVI   
Sbjct: 302  SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360

Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
            +G   SPH T S LHFP +PI+ Q    YF H AIRY    +PQ+ LK+ V L C  A Q
Sbjct: 361  SGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQ 419

Query: 1625 QAG 1633
            Q G
Sbjct: 420  QPG 422


>ref|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus musculus].
          Length = 570

 Score =  412 bits (1060), Expect = e-115
 Identities = 251/501 (50%), Positives = 281/501 (56%), Gaps = 13/501 (2%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68   IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
                             D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF  
Sbjct: 188  DSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241

Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
                          G                    +++ M+      FY           
Sbjct: 242  GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
                WHE +  M SPTT+                    + F QHH P I G   S  +T 
Sbjct: 299  GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358

Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
                PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q +    
Sbjct: 359  TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414

Query: 1643 FLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSP 1816
               PN S Q  GKV                                  STEG AASPT+ 
Sbjct: 415  --QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEGEAASPTAT 470

Query: 1817 ILVPGIKVAASHHPPDRPPDP 1879
                     A+ +    P DP
Sbjct: 471  TYTASGTSQANRYVGLSPRDP 491


>ref|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus musculus].
          Length = 561

 Score =  412 bits (1058), Expect = e-115
 Identities = 238/434 (54%), Positives = 265/434 (61%), Gaps = 13/434 (2%)
 Frame = +2

Query: 416  IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
            +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8    LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596  VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
            +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68   IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776  WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
            WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V   
Sbjct: 128  WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187

Query: 956  XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
                             D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG NF  
Sbjct: 188  DSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241

Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
                          G                    +++ M+      FY           
Sbjct: 242  GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
                WHE +  M SPTT+                    + F QHH P I G   S  +T 
Sbjct: 299  GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358

Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
                PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q +    
Sbjct: 359  TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414

Query: 1643 FLNPNGSSQ--GKV 1678
               PN S Q  GKV
Sbjct: 415  --QPNSSGQVVGKV 426


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 78,431,242
Number of extensions: 2124045
Number of successful extensions: 7922
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7840
Number of HSP's successfully gapped: 19
Length of query: 780
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 671
Effective length of database: 12,343,635
Effective search space: 8282579085
Effective search space used: 8282579085
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scro...   690   0.0  
Alignment   gi|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1...   478   e-135
Alignment   gi|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2...   468   e-132
Alignment   gi|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scro...   466   e-131
Alignment   gi|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus...   388   e-108
Alignment   gi|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus...   337   2e-92
Alignment   gi|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769...   332   7e-91
Alignment   gi|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus...   267   2e-71
Alignment   gi|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1...    92   2e-18

>ref|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scrofa].
          Length = 501

 Score =  690 bits (1781), Expect = 0.0
 Identities = 356/486 (73%), Positives = 357/486 (73%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 1    MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH    
Sbjct: 121  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF    
Sbjct: 181  SQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 240

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
                      PGAM                  VEDEMDSPGEEPFYT             
Sbjct: 241  LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 300

Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
             WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 301  GWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 360

Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
            HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 361  HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 420

Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
            N                                STEGGAASPTSP         A+    
Sbjct: 421  NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 480

Query: 1862 DRPPDP 1879
              P DP
Sbjct: 481  VGPRDP 486


>ref|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1 [Sus scrofa].
          Length = 510

 Score =  478 bits (1229), Expect = e-135
 Identities = 262/429 (61%), Positives = 289/429 (67%), Gaps = 9/429 (2%)
 Frame = +2

Query: 419  AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
            A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 16   ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 75

Query: 599  KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
            KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 76   KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 135

Query: 779  RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
            RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH   
Sbjct: 136  RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 195

Query: 959  XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
                          IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF   
Sbjct: 196  SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 254

Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
                          +                    D  EM+SP ++ FY  T        
Sbjct: 255  DLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 314

Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
                   ++V+ G   P +L                     AFT H  PV+ G R  SP 
Sbjct: 315  SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 371

Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLN 1651
            AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     
Sbjct: 372  ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ----- 426

Query: 1652 PNGSSQGKV 1678
            PNGS QGKV
Sbjct: 427  PNGSGQGKV 435


>ref|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2 [Sus scrofa].
          Length = 433

 Score =  468 bits (1204), Expect = e-132
 Identities = 254/414 (61%), Positives = 281/414 (67%), Gaps = 9/414 (2%)
 Frame = +2

Query: 422  MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
            MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1    MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60

Query: 602  QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
            QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61   QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120

Query: 782  LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
            LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH    
Sbjct: 121  LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180

Query: 962  XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
                         IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF    
Sbjct: 181  GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239

Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
                         +                    D  EM+SP ++ FY  T         
Sbjct: 240  LESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299

Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
                  ++V+ G   P +L                     AFT H  PV+ G R  SP A
Sbjct: 300  QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356

Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
            T S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 357  TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410


>ref|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scrofa].
          Length = 440

 Score =  466 bits (1199), Expect = e-131
 Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 129  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 189  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
                        +                    D  EM+SP ++ FY  T          
Sbjct: 248  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307

Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 308  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364

Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 365  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus scrofa].
          Length = 406

 Score =  388 bits (997), Expect = e-108
 Identities = 222/411 (54%), Positives = 250/411 (60%), Gaps = 7/411 (1%)
 Frame = +2

Query: 425  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68

Query: 605  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL         
Sbjct: 69   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL--------- 119

Query: 785  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
                                   SPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 120  -----------------------SPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 156

Query: 965  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
                        IK  P NGHL FQD FVTSGV++VTELVRVSQ+ +A  +GPNF     
Sbjct: 157  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQSXVATASGPNFSLADL 215

Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY--TXXXXXXXXXXXX 1318
                                            + EM+SP ++ FY  T            
Sbjct: 216  ESPSYYNINXXXXXXXSLSSFPSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSS 275

Query: 1319 XXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHATPS 1495
               ++V+ G   P +L                     AFT H  PV+ G R  SP AT S
Sbjct: 276  GWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATAS 332

Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
             LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 333  ALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 383


>ref|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus scrofa].
          Length = 200

 Score =  337 bits (864), Expect = 2e-92
 Identities = 161/177 (90%), Positives = 169/177 (95%)
 Frame = +2

Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
           +  DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8   LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67

Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
           +KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68  IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127

Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 946
           WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYV 184


>ref|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769 [Sus scrofa].
          Length = 430

 Score =  332 bits (850), Expect = 7e-91
 Identities = 163/183 (89%), Positives = 168/183 (91%)
 Frame = +2

Query: 398 LTYSFYIAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 577
           LT  F    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 133 LTSGFSRPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 192

Query: 578 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 757
           L EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCL
Sbjct: 193 LGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCL 252

Query: 758 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 937
           RQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLA
Sbjct: 253 RQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLA 312

Query: 938 YFV 946
           YFV
Sbjct: 313 YFV 315


>ref|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus scrofa].
          Length = 196

 Score =  267 bits (682), Expect = 2e-71
 Identities = 140/184 (76%), Positives = 140/184 (76%)
 Frame = +2

Query: 1340 PGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 1519
            PGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLHFPTSP
Sbjct: 13   PGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 72

Query: 1520 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXX 1699
            IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN     
Sbjct: 73   IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPT 132

Query: 1700 XXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPPDRPPDP 1879
                                       STEGGAASPTSPILVPGIKVAASHHPPDRPPDP
Sbjct: 133  PMLPPPXXXXXXRPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIKVAASHHPPDRPPDP 192

Query: 1880 FSTL 1891
            FSTL
Sbjct: 193  FSTL 196


>ref|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1 [Sus scrofa].
          Length = 359

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 80/237 (33%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
 Frame = +2

Query: 1007 DQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXXXXXXXXXXX-PGAM 1183
            D PE G+L  +DSFV SGVF+V+ELVRVS+TPI  GTG NF                G  
Sbjct: 21   DVPE-GYL--EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVN 77

Query: 1184 XXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTT 1363
                              +++ M+      FY               WHE +  M SPTT
Sbjct: 78   LQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRT---WHERDQDMSSPTT 134

Query: 1364 LXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT-----PSTLHFPTSPIIQ 1528
            +                    + F QHH P I G   S  +T     PS L FPT  I+ 
Sbjct: 135  MKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILP 194

Query: 1529 Q-PGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQ--GKV 1678
              P  YFSHP IRY    +PQ+TLK +V    P + Q +       PN S Q  GKV
Sbjct: 195  PAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS------QPNSSGQVVGKV 245


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,187,879
Number of extensions: 1605063
Number of successful extensions: 6064
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6023
Number of HSP's successfully gapped: 14
Length of query: 780
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 673
Effective length of database: 8,679,953
Effective search space: 5841608369
Effective search space used: 5841608369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002115
         (2341 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        1057   0.0  
gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130      932   0.0  
Sscrofa_Chr02                                                         232   7e-58
gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816      168   9e-39
Sscrofa_Chr01                                                         125   1e-25

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 1057 bits (533), Expect = 0.0
 Identities = 533/533 (100%)
 Strand = Plus / Minus

                                                                             
Query: 424       ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 483
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153490 ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 139153431

                                                                             
Query: 484       atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 543
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153430 atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 139153371

                                                                             
Query: 544       aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 603
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153370 aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 139153311

                                                                             
Query: 604       gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 663
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153310 gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 139153251

                                                                             
Query: 664       ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 723
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153250 ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 139153191

                                                                             
Query: 724       ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggaggtt 783
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153190 ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggaggtt 139153131

                                                                             
Query: 784       ggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgagcg 843
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153130 ggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgagcg 139153071

                                                                             
Query: 844       ccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacatagg 903
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153070 ccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacatagg 139153011

                                                                      
Query: 904       ggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 956
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153010 ggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 139152958



 Score =  932 bits (470), Expect = 0.0
 Identities = 509/525 (96%), Gaps = 1/525 (0%)
 Strand = Plus / Minus

                                                                             
Query: 1818      tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 1877
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771978 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 138771919

                                                                             
Query: 1878      ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 1937
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771918 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 138771859

                                                                             
Query: 1938      actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 1997
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771858 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 138771799

                                                                             
Query: 1998      gcaaaggccataaccttttgggannnnnnnnnnnn-aatactttagggactgttgtaatt 2056
                 |||||||||||||||||||||||             ||||||||||||||||||||||||
Sbjct: 138771798 gcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgtaatt 138771739

                                                                             
Query: 2057      ttctcatatggtgctggaaatggttgagctttgtaacatttgaagtgtttccgtggtagc 2116
                 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138771738 ttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggtagc 138771679

                                                                             
Query: 2117      gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 2176
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771678 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 138771619

                                                                             
Query: 2177      cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 2236
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771618 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 138771559

                                                                             
Query: 2237      gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 2296
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771558 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 138771499

                                                              
Query: 2297      atctgncatatataacttacgggacagtcaaagggcaatgttttt 2341
                 |||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 138771498 atctgcaatatataacttacgggacagtcaaagggcaatgttttt 138771454



 Score =  557 bits (281), Expect = e-155
 Identities = 386/431 (89%), Gaps = 6/431 (1%)
 Strand = Plus / Minus

                                                                             
Query: 1         ctatgcaaattgcagcgattgcggaaataaacaagcgggtagtgagaggagagagggact 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139164054 ctatgcaaattgcagcgattgcggaaataaacaagcgggtagtgagaggagagagggact 139163995

                                                                             
Query: 61        gcgaaccgattgcaacttcggcaaagtctcgtagaatccaaagcacacaaggcaaaacca 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163994 gcgaaccgattgcaacttcggcaaagtctcgtagaatccaaagcacacaaggcaaaacca 139163935

                                                                             
Query: 121       gagagaatctgagaaccagccagcccgggttggatcgctttcaaaagaggagagacagtg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163934 gagagaatctgagaaccagccagcccgggttggatcgctttcaaaagaggagagacagtg 139163875

                                                                             
Query: 181       agagaggcagagagcgcgcattgcaattgcagaagcctcctgatttggag-nnnnnnnnn 239
                 ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 139163874 agagaggcagagagcgcgcattgcaattgcagaagcctcctgatttggagaaaaaaaaaa 139163815

                                                                             
Query: 240       nnnnnntctccaagaagcctgcaattggccaacagctt-nnnnnnnnntctcttccgggt 298
                       ||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 139163814 aaaaaatctccaagaagcctgcaattggccaacagcttaaaaaaaaaatctcttccgggt 139163755

                                                                             
Query: 299       tttcaacggttccaagtttattaagatatctttttaatgc----nnnnnnnnnnnnnnng 354
                 ||||||||||||||||||||||||||||||||||||||||                   |
Sbjct: 139163754 tttcaacggttccaagtttattaagatatctttttaatgcaaaaaaaaaaaaaaaaaaag 139163695

                                                                             
Query: 355       ggggacaacaaatgaagcaattcgtctgaacattttaaagtttctcacgtactcttttta 414
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163694 ggggacaacaaatgaagcaattcgtctgaacattttaaagtttctcacgtactcttttta 139163635

                            
Query: 415       cattgcaatgg 425
                 |||||||||||
Sbjct: 139163634 cattgcaatgg 139163624



 Score =  361 bits (182), Expect = 1e-96
 Identities = 185/186 (99%)
 Strand = Plus / Minus

                                                                             
Query: 1466      cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1525
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826555 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 138826496

                                                                             
Query: 1526      cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 1585
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826495 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 138826436

                                                                             
Query: 1586      aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1645
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826435 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 138826376

                       
Query: 1646      ctcaat 1651
                 ||||||
Sbjct: 138826375 ctcaat 138826370



 Score =  329 bits (166), Expect = 4e-87
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1652      cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1711
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824101 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 138824042

                                                                             
Query: 1712      ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 1771
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824041 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 138823982

                                                               
Query: 1772      ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 1817
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138823981 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 138823936



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1339      gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1398
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851067 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 138851008

                                                                             
Query: 1399      ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1458
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851007 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 138850948

                               
Query: 1459      tacaggacccagag 1472
                 ||||||||||||||
Sbjct: 138850947 tacaggacccagag 138850934



 Score =  262 bits (132), Expect = 8e-67
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1213      cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 1272
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876764 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 138876705

                                                                             
Query: 1273      attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 1332
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876704 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 138876645

                             
Query: 1333      agtggagccagg 1344
                 ||||||||||||
Sbjct: 138876644 agtggagccagg 138876633



 Score =  234 bits (118), Expect = 2e-58
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1098      caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 1157
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883100 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 138883041

                                                                           
Query: 1158      actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 1215
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883040 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 138882983



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1022      ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 1081
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138904571 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 138904512

                                 
Query: 1082      gtaagagtgtcacaga 1097
                 ||||||||||||||||
Sbjct: 138904511 gtaagagtgtcacaga 138904496



 Score =  139 bits (70), Expect = 8e-30
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                             
Query: 954       cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 1013
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138958634 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 138958575

                           
Query: 1014      cagaaaatgg 1023
                 ||||||||||
Sbjct: 138958574 cagaaaatgg 138958565


>gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130
          Length = 191081

 Score =  932 bits (470), Expect = 0.0
 Identities = 509/525 (96%), Gaps = 1/525 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1818   tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 1877
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117822 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 117881

                                                                          
Query: 1878   ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 1937
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117882 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 117941

                                                                          
Query: 1938   actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 1997
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117942 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 118001

                                                                          
Query: 1998   gcaaaggccataaccttttgggannnnnnnnnnnn-aatactttagggactgttgtaatt 2056
              |||||||||||||||||||||||             ||||||||||||||||||||||||
Sbjct: 118002 gcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgtaatt 118061

                                                                          
Query: 2057   ttctcatatggtgctggaaatggttgagctttgtaacatttgaagtgtttccgtggtagc 2116
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 118062 ttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggtagc 118121

                                                                          
Query: 2117   gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 2176
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118122 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 118181

                                                                          
Query: 2177   cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 2236
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118182 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 118241

                                                                          
Query: 2237   gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 2296
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118242 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 118301

                                                           
Query: 2297   atctgncatatataacttacgggacagtcaaagggcaatgttttt 2341
              |||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 118302 atctgcaatatataacttacgggacagtcaaagggcaatgttttt 118346



 Score =  361 bits (182), Expect = 1e-96
 Identities = 185/186 (99%)
 Strand = Plus / Plus

                                                                         
Query: 1466  cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1525
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76168 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 76227

                                                                         
Query: 1526  cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 1585
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76228 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 76287

                                                                         
Query: 1586  aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1645
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76288 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 76347

                   
Query: 1646  ctcaat 1651
             ||||||
Sbjct: 76348 ctcaat 76353



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1339  gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1398
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52701 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 52760

                                                                         
Query: 1399  ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1458
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52761 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 52820

                           
Query: 1459  tacaggacccagag 1472
             ||||||||||||||
Sbjct: 52821 tacaggacccagag 52834



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1734  ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 1793
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78933 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 78992

                                     
Query: 1794  gtgcagcctcccccacctcaccaa 1817
             ||||||||||||||||||||||||
Sbjct: 78993 gtgcagcctcccccacctcaccaa 79016



 Score =  131 bits (66), Expect = 2e-27
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1652  cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1711
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78767 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 78826

                   
Query: 1712  ccgccg 1717
             ||||||
Sbjct: 78827 ccgccg 78832


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  232 bits (117), Expect = 7e-58
 Identities = 375/461 (81%)
 Strand = Plus / Minus

                                                                            
Query: 440      ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
                |||||||| || || ||||| |||||||| |||||| ||||||| |||||||||||||||
Sbjct: 66394175 ttcatcgaggcgctgctgcctcacgtccgcgccttctcctacacctggttcaacctgcag 66394116

                                                                            
Query: 500      gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
                || || || || || ||||||||||| || || ||||| |||||||| || || ||| ||
Sbjct: 66394115 gcgcggaagcgcaagtacttcaagaagcacgagaagcggatgtcaaaggacgaggagcga 66394056

                                                                            
Query: 560      gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
                || |||||||| ||| ||||  | || || || ||| |||||||||||||||| ||||| 
Sbjct: 66394055 gcggtgaaggacgagctgctgggcgagaagcctgagatcaagcagaagtgggcatcccgg 66393996

                                                                            
Query: 620      cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
                || ||||||||| |||| ||||||||||| ||||||| ||||||||| ||||| || || 
Sbjct: 66393995 ctgctggccaagctgcgcaaagacatccggcccgagttccgagaggactttgtgctgacc 66393936

                                                                            
Query: 680      gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
                 | || || || ||||| || || || || || |||||||| |||||||| |||||||| 
Sbjct: 66393935 atcacgggcaagaagcccccctgctgcgtgctctccaaccccgaccagaagggcaagatc 66393876

                                                                            
Query: 740      cgaagaattgactgcctccgccaggcagacaaagtctggaggttggacctggttatggtg 799
                ||  | ||||||||||| |||||||| ||||| || ||| || |||||||||| ||||||
Sbjct: 66393875 cggcggattgactgccttcgccaggccgacaaggtgtggcggctggacctggtcatggtg 66393816

                                                                            
Query: 800      attttatttaaaggtattccgctcgaaagtactgatggcgagcgccttgtaaagtccccg 859
                ||||| ||||| || || || || ||||||||||| || ||||| ||    ||||| || 
Sbjct: 66393815 attttgtttaaggggatccccctggaaagtactgacggggagcggctctacaagtcgccc 66393756

                                                         
Query: 860      cagtgctctaacccagggctctgtgtccagccccatcacat 900
                |||||||| ||||| || || || |||||||| ||||||||
Sbjct: 66393755 cagtgctcgaaccccggcctgtgcgtccagccacatcacat 66393715



 Score =  180 bits (91), Expect = 2e-42
 Identities = 292/359 (81%)
 Strand = Plus / Minus

                                                                            
Query: 440      ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
                |||||||| || || ||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 75812757 ttcatcgaggcgctgctgcctcacgtccgcgccttcgcctacacctggttcaacctgcag 75812698

                                                                            
Query: 500      gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
                || || || || || ||||||||||| ||||| ||||| ||||||||||| || ||| | 
Sbjct: 75812697 gcgcggaagcgcaagtacttcaagaagcatgagaagcggatgtcaaaagatgaggagcgc 75812638

                                                                            
Query: 560      gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
                || |||||||| ||| ||||  | || ||  | ||||||||||||||||||||||| || 
Sbjct: 75812637 gcggtgaaggacgagctgctgggcgagaaggccgaggtcaagcagaagtgggcgtcgcgg 75812578

                                                                            
Query: 620      cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
                || ||||||||| |||| || |||||||| ||||| | ||| ||||| ||||| ||  | 
Sbjct: 75812577 ctgctggccaagctgcgcaaggacatccggcccgaatgccgcgaggactttgtgctggcc 75812518

                                                                            
Query: 680      gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
                 | || || || ||| ||||| | || || || |||||||| |||||||| |||||||||
Sbjct: 75812517 atcaccggcaagaaggcgccaggctgcgtgctctccaaccccgaccagaagggcaagatg 75812458

                                                                           
Query: 740      cgaagaattgactgcctccgccaggcagacaaagtctggaggttggacctggttatggt 798
                ||  | || |||||||| |||||||| ||||| || ||| || |||||||||| |||||
Sbjct: 75812457 cgccgcatcgactgcctgcgccaggccgacaaggtgtggcggctggacctggtcatggt 75812399


>gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816
          Length = 96638

 Score =  168 bits (85), Expect = 9e-39
 Identities = 259/317 (81%)
 Strand = Plus / Minus

                                                                         
Query: 440   ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
             |||||||| || || ||||| |||||||| |||||| ||||||| |||||||||||||||
Sbjct: 88558 ttcatcgaggcgctgctgcctcacgtccgcgccttctcctacacctggttcaacctgcag 88499

                                                                         
Query: 500   gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
             || || || || || ||||||||||| || || ||||| |||||||| || || ||| ||
Sbjct: 88498 gcgcggaagcgcaagtacttcaagaagcacgagaagcggatgtcaaaggacgaggagcga 88439

                                                                         
Query: 560   gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
             || |||||||| ||| ||||  | || || || ||| |||||||||||||||| ||||| 
Sbjct: 88438 gcggtgaaggacgagctgctgggcgagaagcctgagatcaagcagaagtgggcatcccgg 88379

                                                                         
Query: 620   cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
             || ||||||||| |||| ||||||||||| ||||||| ||||||||| ||||| || || 
Sbjct: 88378 ctgctggccaagctgcgcaaagacatccggcccgagttccgagaggactttgtgctgacc 88319

                                                                         
Query: 680   gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
              | || || || ||||| || || || || || |||||||| |||||||| |||||||| 
Sbjct: 88318 atcacgggcaagaagcccccctgctgcgtgctctccaaccccgaccagaagggcaagatc 88259

                              
Query: 740   cgaagaattgactgcct 756
             ||  | |||||||||||
Sbjct: 88258 cggcggattgactgcct 88242


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  125 bits (63), Expect = 1e-25
 Identities = 282/355 (79%)
 Strand = Plus / Plus

                                                                             
Query: 424       ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 483
                 |||||||||||| || |||||||| ||||| || || || ||||| ||  ||||||| ||
Sbjct: 231964139 ggatgaatttcacccgttcatcgaggcactacttccacatgtccgtgcaatcgcctatac 231964198

                                                                             
Query: 484       atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 543
                  ||||||||||||||||| || ||||| || ||||| || || || || ||||| |||||
Sbjct: 231964199 ttggttcaacctgcaggctcggaaacgcaagtactttaaaaagcacgagaagcgaatgtc 231964258

                                                                             
Query: 544       aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 603
                 ||| || ||||| ||||| || || |||||| | || || ||||| || ||  |||| ||
Sbjct: 231964259 aaaggatgaagaaagagcagtcaaagatgagcttctcagcgaaaagcctgaaatcaaaca 231964318

                                                                             
Query: 604       gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 663
                 ||||||||| ||| | || ||||||||  |||| ||||| ||||| |  |||||||||||
Sbjct: 231964319 gaagtgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccgaga 231964378

                                                                             
Query: 664       ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 723
                 ||| ||||| || || || || || || ||||  || || |||||  | ||||| || ||
Sbjct: 231964379 ggactttgtgctcaccgtgactggcaagaagcacccgtgctgtgtcttatccaatcccga 231964438

                                                                        
Query: 724       ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctgg 778
                 |||||| || |||||  | ||||| |||||||| || ||||||||||||||||||
Sbjct: 231964439 ccagaagggtaagattaggagaatcgactgcctgcgacaggcagacaaagtctgg 231964493


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,663,206
Number of extensions: 466
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 26
Length of query: 2341
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2319
Effective length of database: 2,808,408,574
Effective search space: 6512699483106
Effective search space used: 6512699483106
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)