Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033298.1| nuclear factor 1 A-type [Bos taurus]. 607 e-173
Alignment gi|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taur... 479 e-135
Alignment gi|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [B... 468 e-131
Alignment gi|NP_001019745.1| nuclear factor 1 C-type [Bos taurus]. 417 e-116
Alignment gi|NP_001069572.1| nuclear factor 1 B-type [Bos taurus]. 409 e-114
Alignment gi|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos... 330 4e-90
>ref|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].
Length = 462
Score = 607 bits (1565), Expect = e-173
Identities = 317/447 (70%), Positives = 318/447 (71%)
Frame = +2
Query: 539 MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 718
MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN
Sbjct: 1 MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 60
Query: 719 PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 898
PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH
Sbjct: 61 PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 120
Query: 899 IGVSVKELDLYLAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTE 1078
IGVSVKELDLYLAYFVH IKDQPENGHLGFQDSFVTSGVFSVTE
Sbjct: 121 IGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTE 180
Query: 1079 LVRVSQTPIAAGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDS 1258
LVRVSQTPIAAGTGPNF PGAM VEDEMDS
Sbjct: 181 LVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDS 240
Query: 1259 PGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFT 1438
PGEEPFYT WHEVEPGMPSPTTL LGTAFT
Sbjct: 241 PGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFT 300
Query: 1439 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 1618
QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA
Sbjct: 301 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 360
Query: 1619 GQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGA 1798
GQQAGQVGFLNPNGSSQGKVHN STEGGA
Sbjct: 361 GQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGA 420
Query: 1799 ASPTSPILVPGIKVAASHHPPDRPPDP 1879
ASPTSP A+ P DP
Sbjct: 421 ASPTSPTYSTPSTSPANRFVSVGPRDP 447
>ref|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taurus].
Length = 510
Score = 479 bits (1233), Expect = e-135
Identities = 263/429 (61%), Positives = 290/429 (67%), Gaps = 9/429 (2%)
Frame = +2
Query: 419 AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 16 ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 75
Query: 599 KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 76 KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 135
Query: 779 RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 136 RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 195
Query: 959 XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 196 SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 254
Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
A+ D EM+SP ++ FY T
Sbjct: 255 DLESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 314
Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
++V+ G P +L AFT H PV+ G R SP
Sbjct: 315 SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 371
Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLN 1651
AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 372 ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ----- 426
Query: 1652 PNGSSQGKV 1678
PNGS QGKV
Sbjct: 427 PNGSGQGKV 435
>ref|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [Bos taurus].
Length = 440
Score = 468 bits (1203), Expect = e-131
Identities = 254/413 (61%), Positives = 281/413 (68%), Gaps = 9/413 (2%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
A+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 308 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364
Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 365 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].
Length = 428
Score = 417 bits (1071), Expect = e-116
Identities = 240/428 (56%), Positives = 272/428 (63%), Gaps = 17/428 (3%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68 VKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRER 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTG
Sbjct: 188 DAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244
Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
PNF P G +E+++D+ +YT
Sbjct: 245 PNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301
Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
W E +E G+ SP L ++FTQHHRPVI
Sbjct: 302 SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360
Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
+G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A Q
Sbjct: 361 SGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQ 419
Query: 1625 QAGQVGFL 1648
Q G +L
Sbjct: 420 QPGPSWYL 427
>ref|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].
Length = 420
Score = 409 bits (1051), Expect = e-114
Identities = 231/414 (55%), Positives = 257/414 (62%), Gaps = 11/414 (2%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 188 DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241
Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
G +++ M+ FY
Sbjct: 242 GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 299 GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358
Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q
Sbjct: 359 TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 412
>ref|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos taurus].
Length = 189
Score = 330 bits (845), Expect = 4e-90
Identities = 160/177 (90%), Positives = 166/177 (93%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68 VKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 946
WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFV 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 90,304,129
Number of extensions: 2494907
Number of successful extensions: 9214
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9148
Number of HSP's successfully gapped: 9
Length of query: 780
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 670
Effective length of database: 14,041,694
Effective search space: 9407934980
Effective search space used: 9407934980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (... 688 0.0
Alignment gi|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (... 476 e-134
Alignment gi|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 468 e-131
Alignment gi|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 467 e-131
Alignment gi|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 466 e-131
Alignment gi|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 457 e-128
Alignment gi|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 449 e-126
Alignment gi|XP_867203.1| PREDICTED: similar to nuclear factor I/X isofor... 430 e-120
Alignment gi|XP_867192.1| PREDICTED: similar to nuclear factor I/X isofor... 430 e-120
Alignment gi|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (... 421 e-117
>ref|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (Nuclear factor 1/A)
(NF1-A) (NFI-A) (NF-I/A) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
Length = 507
Score = 688 bits (1776), Expect = 0.0
Identities = 355/485 (73%), Positives = 356/485 (73%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 8 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 67
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 68 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 127
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 128 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 187
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 188 QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1324
PGAM VEDEMDSPGEEPFYT
Sbjct: 248 ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 307
Query: 1325 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1504
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 308 WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 367
Query: 1505 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1684
FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 368 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 427
Query: 1685 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPPD 1864
STEGGAASPTSP A+
Sbjct: 428 PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 487
Query: 1865 RPPDP 1879
P DP
Sbjct: 488 GPRDP 492
>ref|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (Nuclear factor 1/X)
(NF1-X) (NFI-X) (NF-I/X) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
familiaris].
Length = 501
Score = 476 bits (1226), Expect = e-134
Identities = 261/427 (61%), Positives = 288/427 (67%), Gaps = 9/427 (2%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 308 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364
Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1657
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ PN
Sbjct: 365 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 419
Query: 1658 GSSQGKV 1678
GS QGKV
Sbjct: 420 GSGQGKV 426
>ref|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 7 [Canis familiaris].
Length = 433
Score = 468 bits (1204), Expect = e-131
Identities = 254/414 (61%), Positives = 281/414 (67%), Gaps = 9/414 (2%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1 MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 121 LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 181 GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
+ D EM+SP ++ FY T
Sbjct: 240 LESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299
Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
++V+ G P +L AFT H PV+ G R SP A
Sbjct: 300 QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356
Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
T S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 357 TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410
>ref|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 6 [Canis familiaris].
Length = 457
Score = 467 bits (1202), Expect = e-131
Identities = 254/415 (61%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Frame = +2
Query: 419 AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 24 ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 83
Query: 599 KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 84 KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 143
Query: 779 RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 144 RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 203
Query: 959 XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 204 SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 262
Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
+ D EM+SP ++ FY T
Sbjct: 263 DLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 322
Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
++V+ G P +L AFT H PV+ G R SP
Sbjct: 323 SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 379
Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 380 ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 434
>ref|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 8 [Canis familiaris].
Length = 440
Score = 466 bits (1199), Expect = e-131
Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 308 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364
Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 365 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 3 [Canis familiaris].
Length = 434
Score = 457 bits (1176), Expect = e-128
Identities = 249/412 (60%), Positives = 277/412 (67%), Gaps = 8/412 (1%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
++V+ G P +L AFT H PV+ G R +
Sbjct: 308 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPA----- 359
Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 360 SALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 411
>ref|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 2 [Canis familiaris].
Length = 445
Score = 449 bits (1154), Expect = e-126
Identities = 249/419 (59%), Positives = 278/419 (66%), Gaps = 15/419 (3%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH---XX 955
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPGSW 188
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHL---GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1126
+ +P HL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 189 EEQDGNPSTEMGCSLLSSKP--AHLEVTDFQDCFVTSGVWNVTELVRVSQTPVATASGPN 246
Query: 1127 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1294
F + D EM+SP ++ FY T
Sbjct: 247 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 306
Query: 1295 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1471
++V+ G P +L AFT H PV+ G R
Sbjct: 307 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 363
Query: 1472 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 364 GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 422
>ref|XP_867203.1| PREDICTED: similar to nuclear factor I/X isoform 5 [Canis
familiaris].
Length = 399
Score = 430 bits (1106), Expect = e-120
Identities = 241/412 (58%), Positives = 264/412 (64%), Gaps = 8/412 (1%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
++V+ G P T AS P
Sbjct: 308 SSGWPNDVDAGSPRAT-------------------------------------ASALHFP 330
Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
ST IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 331 ST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 376
>ref|XP_867192.1| PREDICTED: similar to nuclear factor I/X isoform 4 [Canis
familiaris].
Length = 403
Score = 430 bits (1106), Expect = e-120
Identities = 241/412 (58%), Positives = 264/412 (64%), Gaps = 8/412 (1%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 13 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 72
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 73 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 132
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 133 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 192
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 193 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 251
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 252 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 311
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATP 1492
++V+ G P T AS P
Sbjct: 312 SSGWPNDVDAGSPRAT-------------------------------------ASALHFP 334
Query: 1493 STLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
ST IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 335 ST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 380
>ref|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (Nuclear factor 1/C)
(NF1-C) (NFI-C) (NF-I/C) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
Length = 569
Score = 421 bits (1083), Expect = e-117
Identities = 260/514 (50%), Positives = 297/514 (57%), Gaps = 18/514 (3%)
Frame = +2
Query: 392 KFLTYSFYIAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 571
+ LT DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKD
Sbjct: 63 RLLTSVLSCPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKD 122
Query: 572 ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 751
ELL EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRID
Sbjct: 123 ELLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRID 182
Query: 752 CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 931
CLRQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLY
Sbjct: 183 CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLY 242
Query: 932 LAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQ 1096
LAYFV DQ ++ + FQ+SFVTSGVFSVTEL++VS+
Sbjct: 243 LAYFVRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSR 299
Query: 1097 TPIAAGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGE 1267
TP+ GTGPNF P G +E+++D+
Sbjct: 300 TPVVTGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPG 359
Query: 1268 EPFYTXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQH 1444
+YT W E +E G+ SP L ++FTQH
Sbjct: 360 GDYYT---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFHSPSPQDSPRL-SSFTQH 415
Query: 1445 HRPVI---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQ 1600
HRPVI +G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V
Sbjct: 416 HRPVIAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVS 474
Query: 1601 LVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1780
L C A QQ G + NGS Q K+ +
Sbjct: 475 LACDPASQQPGPL-----NGSGQLKMSS------HCLSAQMLAPPPPGLPRLALPPATKP 523
Query: 1781 STEGGAASPTSP-ILVPGIKVAASHHPPDRPPDP 1879
++EGG+ SPTSP PG A P DP
Sbjct: 524 TSEGGSTSPTSPSYSTPGTSPANRSFVGLGPRDP 557
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 94,262,684
Number of extensions: 2574786
Number of successful extensions: 10781
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10643
Number of HSP's successfully gapped: 27
Length of query: 780
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 669
Effective length of database: 15,174,208
Effective search space: 10151545152
Effective search space used: 10151545152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens]. 741 0.0
Alignment gi|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapi... 690 0.0
Alignment gi|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapi... 689 0.0
Alignment gi|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapi... 689 0.0
Alignment gi|NP_002492.2| nuclear factor 1 X-type [Homo sapiens]. 468 e-131
Alignment gi|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens]. 429 e-120
Alignment gi|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens]. 420 e-117
Alignment gi|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapi... 414 e-115
Alignment gi|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens]. 409 e-114
Alignment gi|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapi... 408 e-113
>ref|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].
Length = 498
Score = 741 bits (1914), Expect = 0.0
Identities = 376/492 (76%), Positives = 377/492 (76%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 127 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 187 DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246
Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
PGAM VEDEMDSPGEEPFYT
Sbjct: 247 SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306
Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307 SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426
Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
VHN STEGGAASPTSPILVPGIKVAASHH
Sbjct: 427 VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIKVAASHH 486
Query: 1856 PPDRPPDPFSTL 1891
PPDRPPDPFSTL
Sbjct: 487 PPDRPPDPFSTL 498
>ref|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapiens].
Length = 501
Score = 690 bits (1781), Expect = 0.0
Identities = 356/486 (73%), Positives = 357/486 (73%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 1 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 121 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 181 SQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 240
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
PGAM VEDEMDSPGEEPFYT
Sbjct: 241 LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 300
Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 301 GWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 360
Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 361 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 420
Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
N STEGGAASPTSP A+
Sbjct: 421 NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 480
Query: 1862 DRPPDP 1879
P DP
Sbjct: 481 VGPRDP 486
>ref|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapiens].
Length = 554
Score = 689 bits (1778), Expect = 0.0
Identities = 355/488 (72%), Positives = 357/488 (73%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 52 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 111
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 112 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 171
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 172 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 231
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 232 DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 291
Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
PGAM VEDEMDSPGEEPFYT
Sbjct: 292 SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 351
Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 352 SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 411
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 412 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 471
Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
VHN STEGGAASPTSP A+
Sbjct: 472 VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 531
Query: 1856 PPDRPPDP 1879
P DP
Sbjct: 532 VSVGPRDP 539
>ref|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapiens].
Length = 509
Score = 689 bits (1778), Expect = 0.0
Identities = 355/488 (72%), Positives = 357/488 (73%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 127 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 187 DSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246
Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
PGAM VEDEMDSPGEEPFYT
Sbjct: 247 SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306
Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307 SSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426
Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
VHN STEGGAASPTSP A+
Sbjct: 427 VHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 486
Query: 1856 PPDRPPDP 1879
P DP
Sbjct: 487 VSVGPRDP 494
>ref|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].
Length = 441
Score = 468 bits (1203), Expect = e-131
Identities = 256/421 (60%), Positives = 284/421 (67%), Gaps = 10/421 (2%)
Frame = +2
Query: 404 YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
YS Y + DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2 YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61
Query: 581 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62 GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121
Query: 761 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181
Query: 941 FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
FVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +G
Sbjct: 182 FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240
Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
PNF + D EM+SP ++ FY T
Sbjct: 241 PNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGR 300
Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
++V+ G P +L AFT H PV+ G
Sbjct: 301 SPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGV 357
Query: 1469 R-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1633
R SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ G
Sbjct: 358 RPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 417
Query: 1634 Q 1636
Q
Sbjct: 418 Q 418
>ref|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].
Length = 499
Score = 429 bits (1103), Expect = e-120
Identities = 260/501 (51%), Positives = 297/501 (59%), Gaps = 17/501 (3%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPEVK
Sbjct: 1 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 121 LDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDA 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1126
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTGPN
Sbjct: 181 EQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPN 237
Query: 1127 FXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1297
F P G +E+++D+ +YT
Sbjct: 238 FSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT---SP 294
Query: 1298 XXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI---TG 1465
W E +E G+ SP L ++FTQHHRPVI +G
Sbjct: 295 SSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVHSG 353
Query: 1466 PRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQA 1630
SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A QQ
Sbjct: 354 IARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQP 412
Query: 1631 GQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPT 1810
G + NGS Q K+ + ++EGGA SPT
Sbjct: 413 GPL-----NGSGQLKMPS----HCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPT 463
Query: 1811 SPILVPGIKVAASHHPPDRPP 1873
SP S+ PPD P
Sbjct: 464 SP----------SYSPPDTSP 474
>ref|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].
Length = 428
Score = 420 bits (1080), Expect = e-117
Identities = 241/428 (56%), Positives = 274/428 (64%), Gaps = 17/428 (3%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68 VKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRER 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTG
Sbjct: 188 DAEQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244
Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
PNF P G +E+++D+ +YT
Sbjct: 245 PNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301
Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
W E +E G+ SP L ++FTQHHRPVI
Sbjct: 302 SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360
Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
+G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A Q
Sbjct: 361 SGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQ 419
Query: 1625 QAGQVGFL 1648
Q G +L
Sbjct: 420 QPGPSWYL 427
>ref|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapiens].
Length = 494
Score = 414 bits (1064), Expect = e-115
Identities = 239/434 (55%), Positives = 266/434 (61%), Gaps = 13/434 (2%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 188 DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241
Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
G +++ M+ FY
Sbjct: 242 GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAA 298
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 299 GSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358
Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q +
Sbjct: 359 TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414
Query: 1643 FLNPNGSSQ--GKV 1678
PNGS Q GKV
Sbjct: 415 --QPNGSGQVVGKV 426
>ref|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].
Length = 420
Score = 409 bits (1051), Expect = e-114
Identities = 231/414 (55%), Positives = 257/414 (62%), Gaps = 11/414 (2%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 188 DSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241
Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
G +++ M+ FY
Sbjct: 242 GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAA 298
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 299 GSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358
Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q
Sbjct: 359 TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 412
>ref|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapiens].
Length = 446
Score = 408 bits (1049), Expect = e-113
Identities = 231/411 (56%), Positives = 256/411 (62%), Gaps = 11/411 (2%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE+KQ
Sbjct: 37 DEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQ 96
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 97 KWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRL 156
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 157 DLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQDSG 216
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-XXXX 1141
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 217 QSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEI 270
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
G +++ M+ FY
Sbjct: 271 PSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPSSPAAGSR 327
Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT---- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 328 TWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPP 387
Query: 1490 -PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q
Sbjct: 388 PPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 438
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 92,579,022
Number of extensions: 2536026
Number of successful extensions: 9893
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9816
Number of HSP's successfully gapped: 15
Length of query: 780
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 670
Effective length of database: 14,671,124
Effective search space: 9829653080
Effective search space used: 9829653080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus muscu... 687 0.0
Alignment gi|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus]. 686 0.0
Alignment gi|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus muscu... 619 e-177
Alignment gi|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus muscu... 478 e-135
Alignment gi|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus muscu... 468 e-131
Alignment gi|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus]. 432 e-121
Alignment gi|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus]. 418 e-116
Alignment gi|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus]. 417 e-116
Alignment gi|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus muscu... 412 e-115
Alignment gi|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus muscu... 412 e-115
>ref|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus musculus].
Length = 532
Score = 687 bits (1774), Expect = 0.0
Identities = 354/486 (72%), Positives = 357/486 (73%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 32 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 91
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 92 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 151
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 152 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 211
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 212 SQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 271
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
PGAM VEDEMDSPGEEPFYT
Sbjct: 272 LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 331
Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
WHEVEPG+PSP+TL LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 332 GWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 391
Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 392 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 451
Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
N STEGGAASPTSP A+
Sbjct: 452 NPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 511
Query: 1862 DRPPDP 1879
P DP
Sbjct: 512 VGPRDP 517
>ref|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].
Length = 509
Score = 686 bits (1771), Expect = 0.0
Identities = 353/488 (72%), Positives = 357/488 (73%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 127 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 187 DSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246
Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
PGAM VEDEMDSPGEEPFYT
Sbjct: 247 SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306
Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
WHEVEPG+PSP+TL LGTAFTQHHRPVITGPRASPHATPS
Sbjct: 307 SSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPS 366
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 367 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 426
Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
VHN STEGGAASPTSP A+
Sbjct: 427 VHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 486
Query: 1856 PPDRPPDP 1879
P DP
Sbjct: 487 VSVGPRDP 494
>ref|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus musculus].
Length = 466
Score = 619 bits (1596), Expect = e-177
Identities = 328/488 (67%), Positives = 330/488 (67%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE
Sbjct: 7 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 66
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 67 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 126
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 127 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA 186
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXX 1135
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 187 DSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSL 246
Query: 1136 XXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXX 1315
PGAM VEDEMDSPGEEPFYT
Sbjct: 247 SDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQ 306
Query: 1316 XXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPS 1495
WHEVEP P HATPS
Sbjct: 307 SSGWHEVEPASP-------------------------------------------HATPS 323
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 1675
TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK
Sbjct: 324 TLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGK 383
Query: 1676 VHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHH 1855
VHN STEGGAASPTSP A+
Sbjct: 384 VHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRF 443
Query: 1856 PPDRPPDP 1879
P DP
Sbjct: 444 VSVGPRDP 451
>ref|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus musculus].
Length = 494
Score = 478 bits (1231), Expect = e-135
Identities = 262/428 (61%), Positives = 289/428 (67%), Gaps = 9/428 (2%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1 MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 121 LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 181 GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
+ D EM+SP ++ FY T
Sbjct: 240 LESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299
Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
++V+ G P +L AFT H PV+ G R SP A
Sbjct: 300 QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356
Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNP 1654
T S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ P
Sbjct: 357 TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----P 411
Query: 1655 NGSSQGKV 1678
NGS QGKV
Sbjct: 412 NGSGQGKV 419
>ref|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus musculus].
Length = 441
Score = 468 bits (1203), Expect = e-131
Identities = 256/421 (60%), Positives = 284/421 (67%), Gaps = 10/421 (2%)
Frame = +2
Query: 404 YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
YS Y + DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2 YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61
Query: 581 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62 GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121
Query: 761 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181
Query: 941 FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
FVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +G
Sbjct: 182 FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240
Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
PNF + D EM+SP ++ FY T
Sbjct: 241 PNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGR 300
Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
++V+ G P +L AFT H PV+ G
Sbjct: 301 SPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGV 357
Query: 1469 R-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1633
R SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ G
Sbjct: 358 RPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 417
Query: 1634 Q 1636
Q
Sbjct: 418 Q 418
>ref|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].
Length = 400
Score = 432 bits (1110), Expect = e-121
Identities = 244/420 (58%), Positives = 268/420 (63%), Gaps = 9/420 (2%)
Frame = +2
Query: 404 YSFY-IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 580
YS Y + DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 2 YSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 61
Query: 581 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 760
EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLR
Sbjct: 62 GEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLR 121
Query: 761 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 940
QADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAY
Sbjct: 122 QADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAY 181
Query: 941 FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
FVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +G
Sbjct: 182 FVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASG 240
Query: 1121 PNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXX 1288
PNF + D EM+SP ++ FY T
Sbjct: 241 PNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGR 300
Query: 1289 XXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGP 1468
++V+ G P T
Sbjct: 301 SPAAGSSQSSGWPNDVDAGSPRAT------------------------------------ 324
Query: 1469 RASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
AS PST IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 325 -ASALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 377
>ref|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].
Length = 428
Score = 418 bits (1074), Expect = e-116
Identities = 241/428 (56%), Positives = 272/428 (63%), Gaps = 17/428 (3%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68 VKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVK+ C++P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRER 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTG
Sbjct: 188 DAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244
Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
PNF P G +E+++D+ +YT
Sbjct: 245 PNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301
Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
W E +E G+ SP L ++FTQHHRPVI
Sbjct: 302 SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360
Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
+G SPH T S LHFP +PI+ Q YF H AIRY +PQ+ LK+ V L C A Q
Sbjct: 361 SGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQ 419
Query: 1625 QAGQVGFL 1648
Q G +L
Sbjct: 420 QPGPSWYL 427
>ref|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].
Length = 439
Score = 417 bits (1072), Expect = e-116
Identities = 240/423 (56%), Positives = 270/423 (63%), Gaps = 17/423 (4%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK E
Sbjct: 8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
VKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQADKV
Sbjct: 68 VKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERLVK+ C++P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYFVRER 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1120
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTG
Sbjct: 188 DAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTG 244
Query: 1121 PNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1291
PNF P G +E+++D+ +YT
Sbjct: 245 PNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT--- 301
Query: 1292 XXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI--- 1459
W E +E G+ SP L ++FTQHHRPVI
Sbjct: 302 SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVH 360
Query: 1460 TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1624
+G SPH T S LHFP +PI+ Q YF H AIRY +PQ+ LK+ V L C A Q
Sbjct: 361 SGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPATQ 419
Query: 1625 QAG 1633
Q G
Sbjct: 420 QPG 422
>ref|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus musculus].
Length = 570
Score = 412 bits (1060), Expect = e-115
Identities = 251/501 (50%), Positives = 281/501 (56%), Gaps = 13/501 (2%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 188 DSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241
Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
G +++ M+ FY
Sbjct: 242 GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 299 GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358
Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q +
Sbjct: 359 TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414
Query: 1643 FLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSP 1816
PN S Q GKV STEG AASPT+
Sbjct: 415 --QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEGEAASPTAT 470
Query: 1817 ILVPGIKVAASHHPPDRPPDP 1879
A+ + P DP
Sbjct: 471 TYTASGTSQANRYVGLSPRDP 491
>ref|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus musculus].
Length = 561
Score = 412 bits (1058), Expect = e-115
Identities = 238/434 (54%), Positives = 265/434 (61%), Gaps = 13/434 (2%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXX 955
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ 187
Query: 956 XXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF-X 1132
D +N +DSFV SGVF+V+ELVRVS+TPI GTG NF
Sbjct: 188 DSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPI 241
Query: 1133 XXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXX 1312
G +++ M+ FY
Sbjct: 242 GEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSPNSPAA 298
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT- 1489
WHE + M SPTT+ + F QHH P I G S +T
Sbjct: 299 GSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTR 358
Query: 1490 ----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVG 1642
PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q +
Sbjct: 359 TPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS---- 414
Query: 1643 FLNPNGSSQ--GKV 1678
PN S Q GKV
Sbjct: 415 --QPNSSGQVVGKV 426
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 78,431,242
Number of extensions: 2124045
Number of successful extensions: 7922
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7840
Number of HSP's successfully gapped: 19
Length of query: 780
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 671
Effective length of database: 12,343,635
Effective search space: 8282579085
Effective search space used: 8282579085
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scro... 690 0.0
Alignment gi|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1... 478 e-135
Alignment gi|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2... 468 e-132
Alignment gi|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scro... 466 e-131
Alignment gi|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus... 388 e-108
Alignment gi|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus... 337 2e-92
Alignment gi|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769... 332 7e-91
Alignment gi|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus... 267 2e-71
Alignment gi|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1... 92 2e-18
>ref|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scrofa].
Length = 501
Score = 690 bits (1781), Expect = 0.0
Identities = 356/486 (73%), Positives = 357/486 (73%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK
Sbjct: 1 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 121 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 181 SQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 240
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXX 1321
PGAM VEDEMDSPGEEPFYT
Sbjct: 241 LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 300
Query: 1322 XWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTL 1501
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTL
Sbjct: 301 GWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 360
Query: 1502 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 1681
HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH
Sbjct: 361 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 420
Query: 1682 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPP 1861
N STEGGAASPTSP A+
Sbjct: 421 NPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 480
Query: 1862 DRPPDP 1879
P DP
Sbjct: 481 VGPRDP 486
>ref|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1 [Sus scrofa].
Length = 510
Score = 478 bits (1229), Expect = e-135
Identities = 262/429 (61%), Positives = 289/429 (67%), Gaps = 9/429 (2%)
Frame = +2
Query: 419 AMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEV 598
A DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+
Sbjct: 16 ACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEI 75
Query: 599 KQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVW 778
KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVW
Sbjct: 76 KQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVW 135
Query: 779 RLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXX 958
RLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 136 RLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPE 195
Query: 959 XXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXX 1138
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 196 SGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLA 254
Query: 1139 XXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXX 1306
+ D EM+SP ++ FY T
Sbjct: 255 DLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGS 314
Query: 1307 XXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPH 1483
++V+ G P +L AFT H PV+ G R SP
Sbjct: 315 SQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPR 371
Query: 1484 ATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLN 1651
AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 372 ATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ----- 426
Query: 1652 PNGSSQGKV 1678
PNGS QGKV
Sbjct: 427 PNGSGQGKV 435
>ref|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2 [Sus scrofa].
Length = 433
Score = 468 bits (1204), Expect = e-132
Identities = 254/414 (61%), Positives = 281/414 (67%), Gaps = 9/414 (2%)
Frame = +2
Query: 422 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 601
MDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+K
Sbjct: 1 MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIK 60
Query: 602 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 781
QKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWR
Sbjct: 61 QKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWR 120
Query: 782 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXX 961
LDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 121 LDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPES 180
Query: 962 XXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXX 1141
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 181 GQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLAD 239
Query: 1142 XXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXX 1309
+ D EM+SP ++ FY T
Sbjct: 240 LESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSS 299
Query: 1310 XXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHA 1486
++V+ G P +L AFT H PV+ G R SP A
Sbjct: 300 QSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRA 356
Query: 1487 TPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
T S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 357 TASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410
>ref|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scrofa].
Length = 440
Score = 466 bits (1199), Expect = e-131
Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 128
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 129 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 188
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 189 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 247
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1312
+ D EM+SP ++ FY T
Sbjct: 248 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 307
Query: 1313 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1489
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 308 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 364
Query: 1490 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 365 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus scrofa].
Length = 406
Score = 388 bits (997), Expect = e-108
Identities = 222/411 (54%), Positives = 250/411 (60%), Gaps = 7/411 (1%)
Frame = +2
Query: 425 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 604
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 9 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 68
Query: 605 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 784
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 69 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL--------- 119
Query: 785 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 964
SPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 120 -----------------------SPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 156
Query: 965 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1144
IK P NGHL FQD FVTSGV++VTELVRVSQ+ +A +GPNF
Sbjct: 157 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQSXVATASGPNFSLADL 215
Query: 1145 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY--TXXXXXXXXXXXX 1318
+ EM+SP ++ FY T
Sbjct: 216 ESPSYYNINXXXXXXXSLSSFPSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQSS 275
Query: 1319 XXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHATPS 1495
++V+ G P +L AFT H PV+ G R SP AT S
Sbjct: 276 GWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRATAS 332
Query: 1496 TLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1636
LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 333 ALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 383
>ref|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus scrofa].
Length = 200
Score = 337 bits (864), Expect = 2e-92
Identities = 161/177 (90%), Positives = 169/177 (95%)
Frame = +2
Query: 416 IAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPE 595
+ DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELLSEKPE
Sbjct: 8 LTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPE 67
Query: 596 VKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKV 775
+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLRQADKV
Sbjct: 68 IKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKV 127
Query: 776 WRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 946
WRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY+V
Sbjct: 128 WRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYV 184
>ref|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769 [Sus scrofa].
Length = 430
Score = 332 bits (850), Expect = 7e-91
Identities = 163/183 (89%), Positives = 168/183 (91%)
Frame = +2
Query: 398 LTYSFYIAMDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 577
LT F DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 133 LTSGFSRPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 192
Query: 578 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 757
L EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCL
Sbjct: 193 LGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCL 252
Query: 758 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 937
RQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLA
Sbjct: 253 RQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLA 312
Query: 938 YFV 946
YFV
Sbjct: 313 YFV 315
>ref|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus scrofa].
Length = 196
Score = 267 bits (682), Expect = 2e-71
Identities = 140/184 (76%), Positives = 140/184 (76%)
Frame = +2
Query: 1340 PGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 1519
PGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLHFPTSP
Sbjct: 13 PGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 72
Query: 1520 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXX 1699
IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 73 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPT 132
Query: 1700 XXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAASPTSPILVPGIKVAASHHPPDRPPDP 1879
STEGGAASPTSPILVPGIKVAASHHPPDRPPDP
Sbjct: 133 PMLPPPXXXXXXRPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIKVAASHHPPDRPPDP 192
Query: 1880 FSTL 1891
FSTL
Sbjct: 193 FSTL 196
>ref|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1 [Sus scrofa].
Length = 359
Score = 91.7 bits (226), Expect = 2e-18
Identities = 80/237 (33%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
Frame = +2
Query: 1007 DQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXXXXXXXXXXX-PGAM 1183
D PE G+L +DSFV SGVF+V+ELVRVS+TPI GTG NF G
Sbjct: 21 DVPE-GYL--EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVN 77
Query: 1184 XXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTT 1363
+++ M+ FY WHE + M SPTT
Sbjct: 78 LQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRT---WHERDQDMSSPTT 134
Query: 1364 LXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT-----PSTLHFPTSPIIQ 1528
+ + F QHH P I G S +T PS L FPT I+
Sbjct: 135 MKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILP 194
Query: 1529 Q-PGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQ--GKV 1678
P YFSHP IRY +PQ+TLK +V P + Q + PN S Q GKV
Sbjct: 195 PAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS------QPNSSGQVVGKV 245
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,187,879
Number of extensions: 1605063
Number of successful extensions: 6064
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6023
Number of HSP's successfully gapped: 14
Length of query: 780
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 673
Effective length of database: 8,679,953
Effective search space: 5841608369
Effective search space used: 5841608369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002115
(2341 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1057 0.0
gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130 932 0.0
Sscrofa_Chr02 232 7e-58
gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816 168 9e-39
Sscrofa_Chr01 125 1e-25
>Sscrofa_Chr06
|| Length = 157765593
Score = 1057 bits (533), Expect = 0.0
Identities = 533/533 (100%)
Strand = Plus / Minus
Query: 424 ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153490 ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 139153431
Query: 484 atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153430 atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 139153371
Query: 544 aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153370 aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 139153311
Query: 604 gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153310 gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 139153251
Query: 664 ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153250 ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 139153191
Query: 724 ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggaggtt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153190 ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggaggtt 139153131
Query: 784 ggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgagcg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153130 ggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgagcg 139153071
Query: 844 ccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacatagg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153070 ccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacatagg 139153011
Query: 904 ggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153010 ggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 139152958
Score = 932 bits (470), Expect = 0.0
Identities = 509/525 (96%), Gaps = 1/525 (0%)
Strand = Plus / Minus
Query: 1818 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771978 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 138771919
Query: 1878 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771918 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 138771859
Query: 1938 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771858 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 138771799
Query: 1998 gcaaaggccataaccttttgggannnnnnnnnnnn-aatactttagggactgttgtaatt 2056
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138771798 gcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgtaatt 138771739
Query: 2057 ttctcatatggtgctggaaatggttgagctttgtaacatttgaagtgtttccgtggtagc 2116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 138771738 ttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggtagc 138771679
Query: 2117 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771678 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 138771619
Query: 2177 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771618 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 138771559
Query: 2237 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771558 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 138771499
Query: 2297 atctgncatatataacttacgggacagtcaaagggcaatgttttt 2341
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 138771498 atctgcaatatataacttacgggacagtcaaagggcaatgttttt 138771454
Score = 557 bits (281), Expect = e-155
Identities = 386/431 (89%), Gaps = 6/431 (1%)
Strand = Plus / Minus
Query: 1 ctatgcaaattgcagcgattgcggaaataaacaagcgggtagtgagaggagagagggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139164054 ctatgcaaattgcagcgattgcggaaataaacaagcgggtagtgagaggagagagggact 139163995
Query: 61 gcgaaccgattgcaacttcggcaaagtctcgtagaatccaaagcacacaaggcaaaacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163994 gcgaaccgattgcaacttcggcaaagtctcgtagaatccaaagcacacaaggcaaaacca 139163935
Query: 121 gagagaatctgagaaccagccagcccgggttggatcgctttcaaaagaggagagacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163934 gagagaatctgagaaccagccagcccgggttggatcgctttcaaaagaggagagacagtg 139163875
Query: 181 agagaggcagagagcgcgcattgcaattgcagaagcctcctgatttggag-nnnnnnnnn 239
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163874 agagaggcagagagcgcgcattgcaattgcagaagcctcctgatttggagaaaaaaaaaa 139163815
Query: 240 nnnnnntctccaagaagcctgcaattggccaacagctt-nnnnnnnnntctcttccgggt 298
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 139163814 aaaaaatctccaagaagcctgcaattggccaacagcttaaaaaaaaaatctcttccgggt 139163755
Query: 299 tttcaacggttccaagtttattaagatatctttttaatgc----nnnnnnnnnnnnnnng 354
|||||||||||||||||||||||||||||||||||||||| |
Sbjct: 139163754 tttcaacggttccaagtttattaagatatctttttaatgcaaaaaaaaaaaaaaaaaaag 139163695
Query: 355 ggggacaacaaatgaagcaattcgtctgaacattttaaagtttctcacgtactcttttta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139163694 ggggacaacaaatgaagcaattcgtctgaacattttaaagtttctcacgtactcttttta 139163635
Query: 415 cattgcaatgg 425
|||||||||||
Sbjct: 139163634 cattgcaatgg 139163624
Score = 361 bits (182), Expect = 1e-96
Identities = 185/186 (99%)
Strand = Plus / Minus
Query: 1466 cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1525
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826555 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 138826496
Query: 1526 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826495 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 138826436
Query: 1586 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826435 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 138826376
Query: 1646 ctcaat 1651
||||||
Sbjct: 138826375 ctcaat 138826370
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1652 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824101 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 138824042
Query: 1712 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824041 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 138823982
Query: 1772 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 1817
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138823981 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 138823936
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1339 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851067 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 138851008
Query: 1399 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851007 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 138850948
Query: 1459 tacaggacccagag 1472
||||||||||||||
Sbjct: 138850947 tacaggacccagag 138850934
Score = 262 bits (132), Expect = 8e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1213 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876764 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 138876705
Query: 1273 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876704 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 138876645
Query: 1333 agtggagccagg 1344
||||||||||||
Sbjct: 138876644 agtggagccagg 138876633
Score = 234 bits (118), Expect = 2e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1098 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883100 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 138883041
Query: 1158 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883040 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 138882983
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 1022 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138904571 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 138904512
Query: 1082 gtaagagtgtcacaga 1097
||||||||||||||||
Sbjct: 138904511 gtaagagtgtcacaga 138904496
Score = 139 bits (70), Expect = 8e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 954 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138958634 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 138958575
Query: 1014 cagaaaatgg 1023
||||||||||
Sbjct: 138958574 cagaaaatgg 138958565
>gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130
Length = 191081
Score = 932 bits (470), Expect = 0.0
Identities = 509/525 (96%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 1818 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 1877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117822 tcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctgacc 117881
Query: 1878 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 1937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117882 ccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcactgtc 117941
Query: 1938 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117942 actggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtccaaca 118001
Query: 1998 gcaaaggccataaccttttgggannnnnnnnnnnn-aatactttagggactgttgtaatt 2056
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 118002 gcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgtaatt 118061
Query: 2057 ttctcatatggtgctggaaatggttgagctttgtaacatttgaagtgtttccgtggtagc 2116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 118062 ttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggtagc 118121
Query: 2117 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118122 gtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctgtaa 118181
Query: 2177 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118182 cacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacacaggt 118241
Query: 2237 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118242 gtgagcctccttgagcagtcagggggcccatggagaactaaatcttttgtagtagctgag 118301
Query: 2297 atctgncatatataacttacgggacagtcaaagggcaatgttttt 2341
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 118302 atctgcaatatataacttacgggacagtcaaagggcaatgttttt 118346
Score = 361 bits (182), Expect = 1e-96
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 1466 cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1525
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76168 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 76227
Query: 1526 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76228 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 76287
Query: 1586 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76288 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 76347
Query: 1646 ctcaat 1651
||||||
Sbjct: 76348 ctcaat 76353
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1339 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52701 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 52760
Query: 1399 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52761 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 52820
Query: 1459 tacaggacccagag 1472
||||||||||||||
Sbjct: 52821 tacaggacccagag 52834
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1734 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78933 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 78992
Query: 1794 gtgcagcctcccccacctcaccaa 1817
||||||||||||||||||||||||
Sbjct: 78993 gtgcagcctcccccacctcaccaa 79016
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1652 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78767 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 78826
Query: 1712 ccgccg 1717
||||||
Sbjct: 78827 ccgccg 78832
>Sscrofa_Chr02
|| Length = 162569375
Score = 232 bits (117), Expect = 7e-58
Identities = 375/461 (81%)
Strand = Plus / Minus
Query: 440 ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
|||||||| || || ||||| |||||||| |||||| ||||||| |||||||||||||||
Sbjct: 66394175 ttcatcgaggcgctgctgcctcacgtccgcgccttctcctacacctggttcaacctgcag 66394116
Query: 500 gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
|| || || || || ||||||||||| || || ||||| |||||||| || || ||| ||
Sbjct: 66394115 gcgcggaagcgcaagtacttcaagaagcacgagaagcggatgtcaaaggacgaggagcga 66394056
Query: 560 gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
|| |||||||| ||| |||| | || || || ||| |||||||||||||||| |||||
Sbjct: 66394055 gcggtgaaggacgagctgctgggcgagaagcctgagatcaagcagaagtgggcatcccgg 66393996
Query: 620 cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
|| ||||||||| |||| ||||||||||| ||||||| ||||||||| ||||| || ||
Sbjct: 66393995 ctgctggccaagctgcgcaaagacatccggcccgagttccgagaggactttgtgctgacc 66393936
Query: 680 gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
| || || || ||||| || || || || || |||||||| |||||||| ||||||||
Sbjct: 66393935 atcacgggcaagaagcccccctgctgcgtgctctccaaccccgaccagaagggcaagatc 66393876
Query: 740 cgaagaattgactgcctccgccaggcagacaaagtctggaggttggacctggttatggtg 799
|| | ||||||||||| |||||||| ||||| || ||| || |||||||||| ||||||
Sbjct: 66393875 cggcggattgactgccttcgccaggccgacaaggtgtggcggctggacctggtcatggtg 66393816
Query: 800 attttatttaaaggtattccgctcgaaagtactgatggcgagcgccttgtaaagtccccg 859
||||| ||||| || || || || ||||||||||| || ||||| || ||||| ||
Sbjct: 66393815 attttgtttaaggggatccccctggaaagtactgacggggagcggctctacaagtcgccc 66393756
Query: 860 cagtgctctaacccagggctctgtgtccagccccatcacat 900
|||||||| ||||| || || || |||||||| ||||||||
Sbjct: 66393755 cagtgctcgaaccccggcctgtgcgtccagccacatcacat 66393715
Score = 180 bits (91), Expect = 2e-42
Identities = 292/359 (81%)
Strand = Plus / Minus
Query: 440 ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
|||||||| || || ||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 75812757 ttcatcgaggcgctgctgcctcacgtccgcgccttcgcctacacctggttcaacctgcag 75812698
Query: 500 gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
|| || || || || ||||||||||| ||||| ||||| ||||||||||| || ||| |
Sbjct: 75812697 gcgcggaagcgcaagtacttcaagaagcatgagaagcggatgtcaaaagatgaggagcgc 75812638
Query: 560 gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
|| |||||||| ||| |||| | || || | ||||||||||||||||||||||| ||
Sbjct: 75812637 gcggtgaaggacgagctgctgggcgagaaggccgaggtcaagcagaagtgggcgtcgcgg 75812578
Query: 620 cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
|| ||||||||| |||| || |||||||| ||||| | ||| ||||| ||||| || |
Sbjct: 75812577 ctgctggccaagctgcgcaaggacatccggcccgaatgccgcgaggactttgtgctggcc 75812518
Query: 680 gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
| || || || ||| ||||| | || || || |||||||| |||||||| |||||||||
Sbjct: 75812517 atcaccggcaagaaggcgccaggctgcgtgctctccaaccccgaccagaagggcaagatg 75812458
Query: 740 cgaagaattgactgcctccgccaggcagacaaagtctggaggttggacctggttatggt 798
|| | || |||||||| |||||||| ||||| || ||| || |||||||||| |||||
Sbjct: 75812457 cgccgcatcgactgcctgcgccaggccgacaaggtgtggcggctggacctggtcatggt 75812399
>gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816
Length = 96638
Score = 168 bits (85), Expect = 9e-39
Identities = 259/317 (81%)
Strand = Plus / Minus
Query: 440 ttcatcgaagcacttctgccccacgtccgagccttcgcctacacatggttcaacctgcag 499
|||||||| || || ||||| |||||||| |||||| ||||||| |||||||||||||||
Sbjct: 88558 ttcatcgaggcgctgctgcctcacgtccgcgccttctcctacacctggttcaacctgcag 88499
Query: 500 gcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtcaaaagaagaagagaga 559
|| || || || || ||||||||||| || || ||||| |||||||| || || ||| ||
Sbjct: 88498 gcgcggaagcgcaagtacttcaagaagcacgagaagcggatgtcaaaggacgaggagcga 88439
Query: 560 gccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagcagaagtgggcgtcccga 619
|| |||||||| ||| |||| | || || || ||| |||||||||||||||| |||||
Sbjct: 88438 gcggtgaaggacgagctgctgggcgagaagcctgagatcaagcagaagtgggcatcccgg 88379
Query: 620 cttctggccaagttgcggaaagacatccgacccgagtaccgagaggattttgttcttaca 679
|| ||||||||| |||| ||||||||||| ||||||| ||||||||| ||||| || ||
Sbjct: 88378 ctgctggccaagctgcgcaaagacatccggcccgagttccgagaggactttgtgctgacc 88319
Query: 680 gttacagggaaaaagccgccatgttgtgttctttccaacccagaccagaaaggcaagatg 739
| || || || ||||| || || || || || |||||||| |||||||| ||||||||
Sbjct: 88318 atcacgggcaagaagcccccctgctgcgtgctctccaaccccgaccagaagggcaagatc 88259
Query: 740 cgaagaattgactgcct 756
|| | |||||||||||
Sbjct: 88258 cggcggattgactgcct 88242
>Sscrofa_Chr01
|| Length = 315321322
Score = 125 bits (63), Expect = 1e-25
Identities = 282/355 (79%)
Strand = Plus / Plus
Query: 424 ggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctacac 483
|||||||||||| || |||||||| ||||| || || || ||||| || ||||||| ||
Sbjct: 231964139 ggatgaatttcacccgttcatcgaggcactacttccacatgtccgtgcaatcgcctatac 231964198
Query: 484 atggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatgtc 543
||||||||||||||||| || ||||| || ||||| || || || || ||||| |||||
Sbjct: 231964199 ttggttcaacctgcaggctcggaaacgcaagtactttaaaaagcacgagaagcgaatgtc 231964258
Query: 544 aaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaagca 603
||| || ||||| ||||| || || |||||| | || || ||||| || || |||| ||
Sbjct: 231964259 aaaggatgaagaaagagcagtcaaagatgagcttctcagcgaaaagcctgaaatcaaaca 231964318
Query: 604 gaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccgaga 663
||||||||| ||| | || |||||||| |||| ||||| ||||| | |||||||||||
Sbjct: 231964319 gaagtgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccgaga 231964378
Query: 664 ggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaacccaga 723
||| ||||| || || || || || || |||| || || ||||| | ||||| || ||
Sbjct: 231964379 ggactttgtgctcaccgtgactggcaagaagcacccgtgctgtgtcttatccaatcccga 231964438
Query: 724 ccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctgg 778
|||||| || ||||| | ||||| |||||||| || ||||||||||||||||||
Sbjct: 231964439 ccagaagggtaagattaggagaatcgactgcctgcgacaggcagacaaagtctgg 231964493
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,663,206
Number of extensions: 466
Number of successful extensions: 466
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 26
Length of query: 2341
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2319
Effective length of database: 2,808,408,574
Effective search space: 6512699483106
Effective search space used: 6512699483106
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)