Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033298.1| nuclear factor 1 A-type [Bos taurus]. 647 0.0
Alignment gi|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taur... 504 e-142
Alignment gi|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [B... 474 e-133
Alignment gi|NP_001019745.1| nuclear factor 1 C-type [Bos taurus]. 431 e-120
Alignment gi|NP_001069572.1| nuclear factor 1 B-type [Bos taurus]. 427 e-119
Alignment gi|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos... 343 3e-94
>ref|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].
Length = 462
Score = 647 bits (1670), Expect = 0.0
Identities = 335/462 (72%), Positives = 335/462 (72%)
Frame = +3
Query: 516 MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 695
MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN
Sbjct: 1 MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 60
Query: 696 PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 875
PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH
Sbjct: 61 PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 120
Query: 876 IGVSVKELDLYLAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTE 1055
IGVSVKELDLYLAYFVH IKDQPENGHLGFQDSFVTSGVFSVTE
Sbjct: 121 IGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTE 180
Query: 1056 LVRVSQTPIAAGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDS 1235
LVRVSQTPIAAGTGPNF PGAM VEDEMDS
Sbjct: 181 LVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDS 240
Query: 1236 PGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFT 1415
PGEEPFYT WHEVEPGMPSPTTL LGTAFT
Sbjct: 241 PGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFT 300
Query: 1416 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 1595
QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA
Sbjct: 301 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 360
Query: 1596 GQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGA 1775
GQQAGQVGFLNPNGSSQGKVHN STEGGA
Sbjct: 361 GQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGA 420
Query: 1776 AXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
A ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 421 ASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 462
>ref|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taurus].
Length = 510
Score = 504 bits (1299), Expect = e-142
Identities = 284/508 (55%), Positives = 318/508 (62%), Gaps = 9/508 (1%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 18 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 77
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 78 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 137
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 138 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 197
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 198 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 256
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
A+ D EM+SP ++ FY T
Sbjct: 257 ESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 316
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 317 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 373
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ PN
Sbjct: 374 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 428
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GS QGKV + +G A
Sbjct: 429 GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPSFATTGA 482
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 483 SSANRFVSIGPRDGNFLNIPQQSQSWFL 510
>ref|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [Bos taurus].
Length = 440
Score = 474 bits (1220), Expect = e-133
Identities = 257/419 (61%), Positives = 284/419 (67%), Gaps = 9/419 (2%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F A+ D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
++V+ G P +L AFT H PV+ G R
Sbjct: 302 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358
Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 359 GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].
Length = 428
Score = 431 bits (1107), Expect = e-120
Identities = 247/432 (57%), Positives = 278/432 (64%), Gaps = 17/432 (3%)
Frame = +3
Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 921 VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
V DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+
Sbjct: 184 VRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
GTGPNF P G +E+++D+ +Y
Sbjct: 241 TGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
T W E +E G+ SP L ++FTQHHRPV
Sbjct: 301 T---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356
Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
I +G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C
Sbjct: 357 IAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415
Query: 1590 DAGQQAGQVGFL 1625
A QQ G +L
Sbjct: 416 PASQQPGPSWYL 427
>ref|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].
Length = 420
Score = 427 bits (1098), Expect = e-119
Identities = 239/421 (56%), Positives = 266/421 (63%), Gaps = 11/421 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 Q 1601
Q
Sbjct: 412 Q 412
>ref|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos taurus].
Length = 189
Score = 343 bits (881), Expect = 3e-94
Identities = 167/181 (92%), Positives = 172/181 (95%)
Frame = +3
Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 921 V 923
V
Sbjct: 184 V 184
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,685,732
Number of extensions: 2443020
Number of successful extensions: 8171
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8126
Number of HSP's successfully gapped: 9
Length of query: 782
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,041,694
Effective search space: 9436018368
Effective search space used: 9436018368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (... 729 0.0
Alignment gi|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (... 509 e-144
Alignment gi|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 473 e-133
Alignment gi|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 466 e-131
Alignment gi|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 466 e-131
Alignment gi|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 464 e-130
Alignment gi|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT... 455 e-128
Alignment gi|XP_531936.2| PREDICTED: similar to Nuclear factor 1 B-type (... 442 e-124
Alignment gi|XP_867203.1| PREDICTED: similar to nuclear factor I/X isofor... 437 e-122
Alignment gi|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (... 435 e-122
>ref|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (Nuclear factor 1/A)
(NF1-A) (NFI-A) (NF-I/A) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
Length = 507
Score = 729 bits (1881), Expect = 0.0
Identities = 373/500 (74%), Positives = 373/500 (74%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 8 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 67
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 68 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 127
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 128 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 187
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 188 QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 247
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
PGAM VEDEMDSPGEEPFYT
Sbjct: 248 ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 307
Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 308 WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 367
Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 368 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 427
Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
STEGGAA ANRFVSV
Sbjct: 428 PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 487
Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
GPRDPSFVNIPQQTQSWYLG
Sbjct: 488 GPRDPSFVNIPQQTQSWYLG 507
>ref|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (Nuclear factor 1/X)
(NF1-X) (NFI-X) (NF-I/X) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
familiaris].
Length = 501
Score = 509 bits (1312), Expect = e-144
Identities = 286/514 (55%), Positives = 320/514 (62%), Gaps = 9/514 (1%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F + D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
++V+ G P +L AFT H PV+ G R
Sbjct: 302 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358
Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQV 1616
SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 359 GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ- 417
Query: 1617 GFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXX 1796
PNGS QGKV + +G A
Sbjct: 418 ----PNGSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPS 467
Query: 1797 XXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 468 FATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL 501
>ref|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 8 [Canis familiaris].
Length = 440
Score = 473 bits (1216), Expect = e-133
Identities = 256/419 (61%), Positives = 283/419 (67%), Gaps = 9/419 (2%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F + D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
++V+ G P +L AFT H PV+ G R
Sbjct: 302 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358
Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 359 GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 7 [Canis familiaris].
Length = 433
Score = 466 bits (1199), Expect = e-131
Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 122 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 182 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
+ D EM+SP ++ FY T
Sbjct: 241 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 301 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 358 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410
>ref|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 6 [Canis familiaris].
Length = 457
Score = 466 bits (1199), Expect = e-131
Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 26 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 85
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 86 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 145
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 146 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 205
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 206 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 264
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
+ D EM+SP ++ FY T
Sbjct: 265 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 324
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 325 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 381
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 382 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 434
>ref|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 3 [Canis familiaris].
Length = 434
Score = 464 bits (1193), Expect = e-130
Identities = 252/418 (60%), Positives = 280/418 (66%), Gaps = 8/418 (1%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F + D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRA 1451
++V+ G P +L AFT H PV+ G R
Sbjct: 302 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358
Query: 1452 SPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
+ S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 359 A-----SALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 411
>ref|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
factor) isoform 2 [Canis familiaris].
Length = 445
Score = 455 bits (1171), Expect = e-128
Identities = 252/425 (59%), Positives = 281/425 (66%), Gaps = 15/425 (3%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 H---XXXXXXXXXXXXXXXXXIKDQPENGHL---GFQDSFVTSGVFSVTELVRVSQTPIA 1085
H + +P HL FQD FVTSGV++VTELVRVSQTP+A
Sbjct: 183 HTPGSWEEQDGNPSTEMGCSLLSSKP--AHLEVTDFQDCFVTSGVWNVTELVRVSQTPVA 240
Query: 1086 AGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY- 1256
+GPNF + D EM+SP ++ FY
Sbjct: 241 TASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYP 300
Query: 1257 -TXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
T ++V+ G P +L AFT H PV
Sbjct: 301 GTGRSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPV 357
Query: 1434 ITGPR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AG 1598
+ G R SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +G
Sbjct: 358 LAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSG 417
Query: 1599 QQAGQ 1613
Q GQ
Sbjct: 418 QATGQ 422
>ref|XP_531936.2| PREDICTED: similar to Nuclear factor 1 B-type (Nuclear factor 1/B)
(NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
familiaris].
Length = 494
Score = 442 bits (1137), Expect = e-124
Identities = 267/523 (51%), Positives = 299/523 (57%), Gaps = 13/523 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
Q + PN S Q GKV STE
Sbjct: 412 QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAY 463
Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
A ANR+V + PRDPSF++ Q QSWYLG
Sbjct: 464 TA---------SGTSQANRYVGLSPRDPSFLH---QQQSWYLG 494
>ref|XP_867203.1| PREDICTED: similar to nuclear factor I/X isoform 5 [Canis
familiaris].
Length = 399
Score = 437 bits (1123), Expect = e-122
Identities = 244/418 (58%), Positives = 267/418 (63%), Gaps = 8/418 (1%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F + D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRA 1451
++V+ G P T A
Sbjct: 302 AAGSSQSSGWPNDVDAGSPRAT-------------------------------------A 324
Query: 1452 SPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
S PST IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 325 SALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 376
>ref|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (Nuclear factor 1/C)
(NF1-C) (NFI-C) (NF-I/C) (CCAAT-box binding transcription
factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
Length = 569
Score = 435 bits (1119), Expect = e-122
Identities = 267/528 (50%), Positives = 308/528 (58%), Gaps = 18/528 (3%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
++ S L QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 64 LLTSVLSCPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 123
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LL EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDC
Sbjct: 124 LLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDC 183
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYL
Sbjct: 184 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL 243
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQT 1076
AYFV DQ ++ + FQ+SFVTSGVFSVTEL++VS+T
Sbjct: 244 AYFVRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRT 300
Query: 1077 PIAAGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEE 1247
P+ GTGPNF P G +E+++D+
Sbjct: 301 PVVTGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGG 360
Query: 1248 PFYTXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHH 1424
+YT W E +E G+ SP L ++FTQHH
Sbjct: 361 DYYT---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFHSPSPQDSPRL-SSFTQHH 416
Query: 1425 RPVI---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQL 1580
RPVI +G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L
Sbjct: 417 RPVIAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSL 475
Query: 1581 VCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 1760
C A QQ G + NGS Q K+ + +
Sbjct: 476 ACDPASQQPGPL-----NGSGQLKMSS------HCLSAQMLAPPPPGLPRLALPPATKPT 524
Query: 1761 TEGGAAXXXXXXXXXXXXXXANR-FVSVGPRDPSFVNIPQQTQSWYLG 1901
+EGG+ ANR FV +GPRDP+ + Q QSWYLG
Sbjct: 525 SEGGSTSPTSPSYSTPGTSPANRSFVGLGPRDPAGI---YQAQSWYLG 569
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,962,246
Number of extensions: 2436036
Number of successful extensions: 9291
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9172
Number of HSP's successfully gapped: 27
Length of query: 782
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 671
Effective length of database: 15,174,208
Effective search space: 10181893568
Effective search space used: 10181893568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapi... 751 0.0
Alignment gi|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapi... 748 0.0
Alignment gi|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens]. 697 0.0
Alignment gi|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapi... 729 0.0
Alignment gi|NP_002492.2| nuclear factor 1 X-type [Homo sapiens]. 483 e-136
Alignment gi|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapi... 444 e-124
Alignment gi|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens]. 436 e-122
Alignment gi|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens]. 434 e-121
Alignment gi|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens]. 427 e-119
Alignment gi|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapi... 409 e-114
>ref|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapiens].
Length = 554
Score = 751 bits (1939), Expect = 0.0
Identities = 384/511 (75%), Positives = 384/511 (75%)
Frame = +3
Query: 369 AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 548
AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD
Sbjct: 44 AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 103
Query: 549 ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 728
ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID
Sbjct: 104 ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 163
Query: 729 CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 908
CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY
Sbjct: 164 CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 223
Query: 909 LAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA 1088
LAYFVH IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA
Sbjct: 224 LAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA 283
Query: 1089 GTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
GTGPNF PGAM VEDEMDSPGEEPFYT
Sbjct: 284 GTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQG 343
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPR
Sbjct: 344 RSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPR 403
Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN 1628
ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN
Sbjct: 404 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN 463
Query: 1629 PNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXX 1808
PNGSSQGKVHN STEGGAA
Sbjct: 464 PNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTP 523
Query: 1809 XXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 524 STSPANRFVSVGPRDPSFVNIPQQTQSWYLG 554
>ref|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapiens].
Length = 509
Score = 748 bits (1931), Expect = 0.0
Identities = 382/509 (75%), Positives = 382/509 (75%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
GPNF PGAM VEDEMDSPGEEPFYT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300
Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRAS
Sbjct: 301 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360
Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GSSQGKVHN STEGGAA
Sbjct: 421 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST 480
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 481 SPANRFVSVGPRDPSFVNIPQQTQSWYLG 509
>ref|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].
Length = 498
Score = 697 bits (1798), Expect(2) = 0.0
Identities = 355/468 (75%), Positives = 355/468 (75%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
GPNF PGAM VEDEMDSPGEEPFYT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300
Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRAS
Sbjct: 301 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360
Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAA 1778
GSSQGKVHN STEGGAA
Sbjct: 421 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAA 468
Score = 58.5 bits (140), Expect(2) = 0.0
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 1877 TDTVLVPGIKVAASHHPPDRPPDPFSTL 1960
T +LVPGIKVAASHHPPDRPPDPFSTL
Sbjct: 471 TSPILVPGIKVAASHHPPDRPPDPFSTL 498
>ref|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapiens].
Length = 501
Score = 729 bits (1881), Expect = 0.0
Identities = 373/500 (74%), Positives = 373/500 (74%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 2 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 122 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 181
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 182 QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 241
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
PGAM VEDEMDSPGEEPFYT
Sbjct: 242 ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 301
Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 302 WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 361
Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 362 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 421
Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
STEGGAA ANRFVSV
Sbjct: 422 PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 481
Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
GPRDPSFVNIPQQTQSWYLG
Sbjct: 482 GPRDPSFVNIPQQTQSWYLG 501
>ref|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].
Length = 441
Score = 483 bits (1244), Expect = e-136
Identities = 261/422 (61%), Positives = 288/422 (68%), Gaps = 9/422 (2%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61 LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +
Sbjct: 181 YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
GPNF + D EM+SP ++ FY T
Sbjct: 240 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTG 299
Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
++V+ G P +L AFT H PV+ G
Sbjct: 300 RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG 356
Query: 1443 PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQA 1607
R SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ
Sbjct: 357 VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT 416
Query: 1608 GQ 1613
GQ
Sbjct: 417 GQ 418
>ref|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapiens].
Length = 494
Score = 444 bits (1143), Expect = e-124
Identities = 268/523 (51%), Positives = 300/523 (57%), Gaps = 13/523 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
Q + PNGS Q GKV STE
Sbjct: 412 QTS------QPNGSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAY 463
Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
A ANR+V + PRDPSF++ Q QSWYLG
Sbjct: 464 TA---------SGTSQANRYVGLSPRDPSFLH---QQQSWYLG 494
>ref|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].
Length = 499
Score = 436 bits (1121), Expect = e-122
Identities = 266/518 (51%), Positives = 305/518 (58%), Gaps = 18/518 (3%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPEVKQ
Sbjct: 2 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 122 DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE 181
Query: 942 XXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF 1106
DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+ GTGPNF
Sbjct: 182 QSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNF 238
Query: 1107 XXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXX 1277
P G +E+++D+ +YT
Sbjct: 239 SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT---SPS 295
Query: 1278 XXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI---TGP 1445
W E +E G+ SP L ++FTQHHRPVI +G
Sbjct: 296 SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVHSGI 354
Query: 1446 RASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAG 1610
SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C A QQ G
Sbjct: 355 ARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPG 413
Query: 1611 QVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXX 1790
+ NGS Q K+ + ++EGGA
Sbjct: 414 PL-----NGSGQLKMPS----HCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTS 464
Query: 1791 XXXXXXXXXXANR-FVSVGPRDPSFVNIPQQTQSWYLG 1901
ANR FV +GPRDP+ + Q QSWYLG
Sbjct: 465 PSYSPPDTSPANRSFVGLGPRDPAGI---YQAQSWYLG 499
>ref|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].
Length = 428
Score = 434 bits (1116), Expect = e-121
Identities = 248/432 (57%), Positives = 280/432 (64%), Gaps = 17/432 (3%)
Frame = +3
Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
EKPEVKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 921 VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
V DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+
Sbjct: 184 VRERDAEQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
GTGPNF P G +E+++D+ +Y
Sbjct: 241 TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
T W E +E G+ SP L ++FTQHHRPV
Sbjct: 301 T---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356
Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
I +G SPH + S LHFPT+ I+ Q YF H AIRY +PQ+ LK+ V L C
Sbjct: 357 IAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415
Query: 1590 DAGQQAGQVGFL 1625
A QQ G +L
Sbjct: 416 PASQQPGPSWYL 427
>ref|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].
Length = 420
Score = 427 bits (1098), Expect = e-119
Identities = 239/421 (56%), Positives = 266/421 (63%), Gaps = 11/421 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 Q 1601
Q
Sbjct: 412 Q 412
>ref|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapiens].
Length = 446
Score = 409 bits (1051), Expect = e-114
Identities = 234/419 (55%), Positives = 259/419 (61%), Gaps = 12/419 (2%)
Frame = +3
Query: 381 SPLCLT-QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 557
S LC DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 29 STLCFGFSDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 88
Query: 558 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 737
SEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLR
Sbjct: 89 SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 148
Query: 738 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 917
QADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY
Sbjct: 149 QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 208
Query: 918 FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1097
+V D +N +DSFV SGVF+V+ELVRVS+TPI GTG
Sbjct: 209 YVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTG 262
Query: 1098 PNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
NF G +++ M+ FY
Sbjct: 263 VNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSP 319
Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
WHE + M SPTT+ + F QHH P I G S
Sbjct: 320 SSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHS 379
Query: 1455 PHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1601
+T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P + Q
Sbjct: 380 VISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 438
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 89,365,310
Number of extensions: 2392371
Number of successful extensions: 8527
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8473
Number of HSP's successfully gapped: 16
Length of query: 782
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,671,124
Effective search space: 9858995328
Effective search space used: 9858995328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus]. 745 0.0
Alignment gi|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus muscu... 726 0.0
Alignment gi|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus muscu... 678 0.0
Alignment gi|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus muscu... 500 e-141
Alignment gi|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus muscu... 483 e-136
Alignment gi|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus]. 447 e-125
Alignment gi|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus muscu... 441 e-123
Alignment gi|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus muscu... 432 e-121
Alignment gi|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus]. 432 e-121
Alignment gi|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus]. 431 e-120
>ref|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].
Length = 509
Score = 745 bits (1924), Expect = 0.0
Identities = 380/509 (74%), Positives = 382/509 (75%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
GPNF PGAM VEDEMDSPGEEPFYT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300
Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
WHEVEPG+PSP+TL LGTAFTQHHRPVITGPRAS
Sbjct: 301 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360
Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GSSQGKVHN STEGGAA
Sbjct: 421 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPST 480
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 481 SPANRFVSVGPRDPSFVNIPQQTQSWYLG 509
>ref|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus musculus].
Length = 532
Score = 726 bits (1874), Expect = 0.0
Identities = 371/500 (74%), Positives = 373/500 (74%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 33 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 92
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 93 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 152
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 153 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 212
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 213 QSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 272
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
PGAM VEDEMDSPGEEPFYT
Sbjct: 273 ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 332
Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
WHEVEPG+PSP+TL LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 333 WHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 392
Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 393 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 452
Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
STEGGAA ANRFVSV
Sbjct: 453 PFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 512
Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
GPRDPSFVNIPQQTQSWYLG
Sbjct: 513 GPRDPSFVNIPQQTQSWYLG 532
>ref|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus musculus].
Length = 466
Score = 678 bits (1749), Expect = 0.0
Identities = 355/509 (69%), Positives = 355/509 (69%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
GPNF PGAM VEDEMDSPGEEPFYT
Sbjct: 241 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300
Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
WHEVEP P
Sbjct: 301 PGSGSQSSGWHEVEPASP------------------------------------------ 318
Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 319 -HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 377
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GSSQGKVHN STEGGAA
Sbjct: 378 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPST 437
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 438 SPANRFVSVGPRDPSFVNIPQQTQSWYLG 466
>ref|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus musculus].
Length = 494
Score = 500 bits (1287), Expect = e-141
Identities = 282/508 (55%), Positives = 316/508 (62%), Gaps = 9/508 (1%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 122 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 182 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
+ D EM+SP ++ FY T
Sbjct: 241 ESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 301 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ PN
Sbjct: 358 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 412
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GS QGKV + +G A
Sbjct: 413 GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKTTSTAPDGAALTPPSPSFTTTGA 466
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
ANRFVS+G RD +F+NIPQQ+QSW+L
Sbjct: 467 SSANRFVSIGSRDGNFLNIPQQSQSWFL 494
>ref|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus musculus].
Length = 441
Score = 483 bits (1244), Expect = e-136
Identities = 261/422 (61%), Positives = 288/422 (68%), Gaps = 9/422 (2%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61 LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +
Sbjct: 181 YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
GPNF + D EM+SP ++ FY T
Sbjct: 240 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTG 299
Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
++V+ G P +L AFT H PV+ G
Sbjct: 300 RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG 356
Query: 1443 PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQA 1607
R SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ
Sbjct: 357 VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT 416
Query: 1608 GQ 1613
GQ
Sbjct: 417 GQ 418
>ref|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].
Length = 400
Score = 447 bits (1151), Expect = e-125
Identities = 249/421 (59%), Positives = 272/421 (64%), Gaps = 8/421 (1%)
Frame = +3
Query: 375 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1 MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60
Query: 555 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61 LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120
Query: 735 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121 RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180
Query: 915 YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
YFVH IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +
Sbjct: 181 YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239
Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
GPNF + D EM+SP ++ FY T
Sbjct: 240 GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTG 299
Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
++V+ G P T
Sbjct: 300 RSPAAGSSQSSGWPNDVDAGSPRAT----------------------------------- 324
Query: 1443 PRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1610
AS PST IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ G
Sbjct: 325 --ASALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 376
Query: 1611 Q 1613
Q
Sbjct: 377 Q 377
>ref|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus musculus].
Length = 570
Score = 441 bits (1133), Expect = e-123
Identities = 263/515 (51%), Positives = 295/515 (57%), Gaps = 13/515 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
Q + PN S Q GKV STEG
Sbjct: 412 QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEGE 463
Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQ 1877
AA ANR+V + PRDPSF++ Q
Sbjct: 464 AASPTATTYTASGTSQANRYVGLSPRDPSFLHQQQ 498
>ref|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus musculus].
Length = 561
Score = 432 bits (1111), Expect = e-121
Identities = 261/515 (50%), Positives = 293/515 (56%), Gaps = 13/515 (2%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
AY+V D +N +DSFV SGVF+V+ELVRVS+TPI G
Sbjct: 181 AYYVQEQDSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234
Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
TG NF G +++ M+ FY
Sbjct: 235 TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291
Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
WHE + M SPTT+ + F QHH P I G
Sbjct: 292 SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351
Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
S +T PS L FPT I+ P YFSHP IRY +PQ+TLK +V P +
Sbjct: 352 HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411
Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
Q + PN S Q GKV STE
Sbjct: 412 QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAY 463
Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQ 1877
A ANR+V + PRDPSF++ Q
Sbjct: 464 TA---------SGTSQANRYVGLSPRDPSFLHQQQ 489
>ref|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].
Length = 428
Score = 432 bits (1110), Expect = e-121
Identities = 248/432 (57%), Positives = 278/432 (64%), Gaps = 17/432 (3%)
Frame = +3
Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
EK EVKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ C++P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 921 VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
V DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+
Sbjct: 184 VRERDAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
GTGPNF P G +E+++D+ +Y
Sbjct: 241 TGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
T W E +E G+ SP L ++FTQHHRPV
Sbjct: 301 T---SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356
Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
I +G SPH T S LHFP +PI+ Q YF H AIRY +PQ+ LK+ V L C
Sbjct: 357 IAVHSGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415
Query: 1590 DAGQQAGQVGFL 1625
A QQ G +L
Sbjct: 416 PATQQPGPSWYL 427
>ref|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].
Length = 439
Score = 431 bits (1108), Expect = e-120
Identities = 247/427 (57%), Positives = 276/427 (64%), Gaps = 17/427 (3%)
Frame = +3
Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 4 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63
Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
EK EVKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64 EKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQ 123
Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
ADKVWRLDLVMVILFKGIPLESTDGERLVK+ C++P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYF 183
Query: 921 VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
V DQ ++ + FQ+SFVTSGVFSVTEL++VS+TP+
Sbjct: 184 VRERDAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
GTGPNF P G +E+++D+ +Y
Sbjct: 241 TGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300
Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
T W E +E G+ SP L ++FTQHHRPV
Sbjct: 301 T---SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356
Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
I +G SPH T S LHFP +PI+ Q YF H AIRY +PQ+ LK+ V L C
Sbjct: 357 IAVHSGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415
Query: 1590 DAGQQAG 1610
A QQ G
Sbjct: 416 PATQQPG 422
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 75,697,356
Number of extensions: 2005349
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6686
Number of HSP's successfully gapped: 19
Length of query: 782
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 673
Effective length of database: 12,343,635
Effective search space: 8307266355
Effective search space used: 8307266355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scro... 729 0.0
Alignment gi|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1... 503 e-142
Alignment gi|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scro... 473 e-133
Alignment gi|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2... 466 e-131
Alignment gi|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus... 395 e-110
Alignment gi|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus... 355 6e-98
Alignment gi|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769... 331 1e-90
Alignment gi|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus... 204 2e-63
Alignment gi|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1... 94 3e-19
>ref|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scrofa].
Length = 501
Score = 729 bits (1881), Expect = 0.0
Identities = 373/500 (74%), Positives = 373/500 (74%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 2 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH
Sbjct: 122 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 181
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF
Sbjct: 182 QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 241
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
PGAM VEDEMDSPGEEPFYT
Sbjct: 242 ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 301
Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
WHEVEPGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 302 WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 361
Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 362 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 421
Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
STEGGAA ANRFVSV
Sbjct: 422 PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 481
Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
GPRDPSFVNIPQQTQSWYLG
Sbjct: 482 GPRDPSFVNIPQQTQSWYLG 501
>ref|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1 [Sus scrofa].
Length = 510
Score = 503 bits (1295), Expect = e-142
Identities = 283/508 (55%), Positives = 317/508 (62%), Gaps = 9/508 (1%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 18 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 77
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 78 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 137
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 138 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 197
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 198 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 256
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
+ D EM+SP ++ FY T
Sbjct: 257 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 316
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 317 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 373
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ PN
Sbjct: 374 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 428
Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
GS QGKV + +G A
Sbjct: 429 GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPSFATTGA 482
Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 483 SSANRFVSIGPRDGNFLNIPQQSQSWFL 510
>ref|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scrofa].
Length = 440
Score = 473 bits (1216), Expect = e-133
Identities = 256/419 (61%), Positives = 283/419 (67%), Gaps = 9/419 (2%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123 DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPN
Sbjct: 183 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
F + D EM+SP ++ FY T
Sbjct: 242 FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301
Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
++V+ G P +L AFT H PV+ G R
Sbjct: 302 AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358
Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
SP AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 359 GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417
>ref|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2 [Sus scrofa].
Length = 433
Score = 466 bits (1199), Expect = e-131
Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
Frame = +3
Query: 402 DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2 DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61
Query: 582 KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62 KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121
Query: 762 DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH
Sbjct: 122 DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181
Query: 942 XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
IK P NGHL FQD FVTSGV++VTELVRVSQTP+A +GPNF
Sbjct: 182 QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240
Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
+ D EM+SP ++ FY T
Sbjct: 241 ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300
Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
++V+ G P +L AFT H PV+ G R SP AT
Sbjct: 301 SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357
Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 358 ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410
>ref|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus scrofa].
Length = 406
Score = 395 bits (1014), Expect = e-110
Identities = 225/417 (53%), Positives = 253/417 (60%), Gaps = 7/417 (1%)
Frame = +3
Query: 384 PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
P C QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3 PACRPQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62
Query: 564 KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 63 KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL--- 119
Query: 744 DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
SPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 120 -----------------------------SPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 150
Query: 924 HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
H IK P NGHL FQD FVTSGV++VTELVRVSQ+ +A +GPN
Sbjct: 151 HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQSXVATASGPN 209
Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY--TXXXXXX 1277
F + EM+SP ++ FY T
Sbjct: 210 FSLADLESPSYYNINXXXXXXXSLSSFPSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAA 269
Query: 1278 XXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-AS 1454
++V+ G P +L AFT H PV+ G R S
Sbjct: 270 GSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGS 326
Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
P AT S LHFP++ IIQQ PYF+HP IRY H Q++LKEFVQ VC D +GQ GQ
Sbjct: 327 PRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 383
>ref|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus scrofa].
Length = 200
Score = 355 bits (911), Expect = 6e-98
Identities = 169/184 (91%), Positives = 178/184 (96%)
Frame = +3
Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
+MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1 MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60
Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61 LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120
Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180
Query: 912 AYFV 923
AY+V
Sbjct: 181 AYYV 184
>ref|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769 [Sus scrofa].
Length = 430
Score = 331 bits (848), Expect = 1e-90
Identities = 161/175 (92%), Positives = 166/175 (94%)
Frame = +3
Query: 399 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 578
QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK EVK
Sbjct: 141 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVK 200
Query: 579 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 758
QKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 201 QKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWR 260
Query: 759 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
LDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 261 LDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFV 315
>ref|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus scrofa].
Length = 196
Score = 204 bits (518), Expect(2) = 2e-63
Identities = 110/154 (71%), Positives = 110/154 (71%)
Frame = +3
Query: 1317 PGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 1496
PGMPSPTTL LGTAFTQHHRPVITGPRASPHATPSTLHFPTSP
Sbjct: 13 PGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 72
Query: 1497 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXX 1676
IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 73 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPT 132
Query: 1677 XXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAA 1778
STEGGAA
Sbjct: 133 PMLPPPXXXXXXRPVPLPVPDTKPPTTSTEGGAA 166
Score = 58.5 bits (140), Expect(2) = 2e-63
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 1877 TDTVLVPGIKVAASHHPPDRPPDPFSTL 1960
T +LVPGIKVAASHHPPDRPPDPFSTL
Sbjct: 169 TSPILVPGIKVAASHHPPDRPPDPFSTL 196
>ref|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1 [Sus scrofa].
Length = 359
Score = 94.0 bits (232), Expect = 3e-19
Identities = 95/311 (30%), Positives = 118/311 (37%), Gaps = 13/311 (4%)
Frame = +3
Query: 984 DQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXXXXXXXXXXX-PGAM 1160
D PE G+L +DSFV SGVF+V+ELVRVS+TPI GTG NF G
Sbjct: 21 DVPE-GYL--EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVN 77
Query: 1161 XXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTT 1340
+++ M+ FY WHE + M SPTT
Sbjct: 78 LQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRT---WHERDQDMSSPTT 134
Query: 1341 LXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT-----PSTLHFPTSPIIQ 1505
+ + F QHH P I G S +T PS L FPT I+
Sbjct: 135 MKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILP 194
Query: 1506 Q-PGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQ--GKVHNX 1664
P YFSHP IRY +PQ+TLK +V P + Q + PN S Q GKV
Sbjct: 195 PAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS------QPNSSGQVVGKV--P 246
Query: 1665 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSVG 1844
STE A ANR+V +
Sbjct: 247 GHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAYTA---------SGTSQANRYVGLS 297
Query: 1845 PRDPSFVNIPQ 1877
PRDPSF++ Q
Sbjct: 298 PRDPSFLHQQQ 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 57,270,290
Number of extensions: 1686187
Number of successful extensions: 5296
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5261
Number of HSP's successfully gapped: 16
Length of query: 782
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 675
Effective length of database: 8,679,953
Effective search space: 5858968275
Effective search space used: 5858968275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002116
(2348 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1063 0.0
gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130 805 0.0
Sscrofa_Chr02 236 5e-59
gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816 172 6e-40
Sscrofa_Chr01 129 8e-27
>Sscrofa_Chr06
|| Length = 157765593
Score = 1063 bits (536), Expect = 0.0
Identities = 536/536 (100%)
Strand = Plus / Minus
Query: 398 ccaggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgccta 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153493 ccaggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgccta 139153434
Query: 458 cacatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153433 cacatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtat 139153374
Query: 518 gtcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153373 gtcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaa 139153314
Query: 578 gcagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153313 gcagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccg 139153254
Query: 638 agaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153253 agaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccc 139153194
Query: 698 agaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggag 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153193 agaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggag 139153134
Query: 758 gttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcga 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153133 gttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcga 139153074
Query: 818 gcgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153073 gcgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 139153014
Query: 878 aggggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153013 aggggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 139152958
Score = 805 bits (406), Expect = 0.0
Identities = 448/465 (96%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 1884 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771981 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 138771922
Query: 1944 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771921 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 138771862
Query: 2004 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771861 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 138771802
Query: 2064 acagcaaaggccataaccttttgggannnnnnnnnnnnnaatactttagggactgttgta 2123
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 138771801 acagcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgta 138771742
Query: 2124 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771741 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 138771682
Query: 2184 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771681 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 138771622
Query: 2244 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771621 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 138771562
Query: 2304 ggtgtgaaccctccttgaccagtcagggggcccatggaaaactaa 2348
|||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 138771561 ggtgtg-agcctccttgagcagtcagggggcccatggagaactaa 138771518
Score = 353 bits (178), Expect = 3e-94
Identities = 184/186 (98%)
Strand = Plus / Minus
Query: 1443 cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1502
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826555 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 138826496
Query: 1503 cagcagcctgggccttacttctcccacccggccatccgctatcaccctcaggagacgctg 1562
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826495 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 138826436
Query: 1563 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826435 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 138826376
Query: 1623 ctcaat 1628
||||||
Sbjct: 138826375 ctcaat 138826370
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1629 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824101 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 138824042
Query: 1689 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824041 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 138823982
Query: 1749 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 1794
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138823981 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 138823936
Score = 315 bits (159), Expect = 6e-83
Identities = 166/167 (99%), Gaps = 1/167 (0%)
Strand = Plus / Minus
Query: 82 agcgggaaagggtgcgctatgcctttaacgcccgcgtacagtagacatgtatagtggagt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139158725 agcgggaaagggtgcgctatgcctttaacgcccgcgtacagtagacatgtatagtggagt 139158666
Query: 142 gtagggaaactctaggcggggttaaagttcagctcatggagcggcaatagcgctggctgg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139158665 gtagggaaactctaggcggggttaaagttcagctcatggagcggcaatagcgctggctgg 139158606
Query: 202 ctgcagttgagccgagttggaaatgtgaacgcaagaagcaggcttga 248
|||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 139158605 ctgcagttgagccgag-tggaaatgtgaacgcaagaagcaggcttga 139158560
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1316 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851067 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 138851008
Query: 1376 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851007 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 138850948
Query: 1436 tacaggacccagag 1449
||||||||||||||
Sbjct: 138850947 tacaggacccagag 138850934
Score = 262 bits (132), Expect = 8e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 1190 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876764 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 138876705
Query: 1250 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876704 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 138876645
Query: 1310 agtggagccagg 1321
||||||||||||
Sbjct: 138876644 agtggagccagg 138876633
Score = 234 bits (118), Expect = 2e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 1075 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883100 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 138883041
Query: 1135 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883040 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 138882983
Score = 182 bits (92), Expect = 6e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1795 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138803670 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 138803611
Query: 1855 caagctttgtaaatatccctcaacagacacag 1886
||||||||||||||||||||||||||||||||
Sbjct: 138803610 caagctttgtaaatatccctcaacagacacag 138803579
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 999 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138904571 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 138904512
Query: 1059 gtaagagtgtcacaga 1074
||||||||||||||||
Sbjct: 138904511 gtaagagtgtcacaga 138904496
Score = 139 bits (70), Expect = 8e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 931 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138958634 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 138958575
Query: 991 cagaaaatgg 1000
||||||||||
Sbjct: 138958574 cagaaaatgg 138958565
Score = 69.9 bits (35), Expect = 6e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 1 ggcggccgtgcggtgcggtgcagagcggaggcgga 35
|||||||||||||||||||||||||||||||||||
Sbjct: 139158806 ggcggccgtgcggtgcggtgcagagcggaggcgga 139158772
>gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130
Length = 191081
Score = 805 bits (406), Expect = 0.0
Identities = 448/465 (96%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 1884 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117819 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 117878
Query: 1944 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117879 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 117938
Query: 2004 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117939 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 117998
Query: 2064 acagcaaaggccataaccttttgggannnnnnnnnnnnnaatactttagggactgttgta 2123
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 117999 acagcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgta 118058
Query: 2124 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118059 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 118118
Query: 2184 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118119 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 118178
Query: 2244 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118179 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 118238
Query: 2304 ggtgtgaaccctccttgaccagtcagggggcccatggaaaactaa 2348
|||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 118239 ggtgtg-agcctccttgagcagtcagggggcccatggagaactaa 118282
Score = 353 bits (178), Expect = 3e-94
Identities = 184/186 (98%)
Strand = Plus / Plus
Query: 1443 cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1502
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76168 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 76227
Query: 1503 cagcagcctgggccttacttctcccacccggccatccgctatcaccctcaggagacgctg 1562
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76228 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 76287
Query: 1563 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76288 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 76347
Query: 1623 ctcaat 1628
||||||
Sbjct: 76348 ctcaat 76353
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1316 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52701 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 52760
Query: 1376 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52761 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 52820
Query: 1436 tacaggacccagag 1449
||||||||||||||
Sbjct: 52821 tacaggacccagag 52834
Score = 182 bits (92), Expect = 6e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1795 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86179 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 86238
Query: 1855 caagctttgtaaatatccctcaacagacacag 1886
||||||||||||||||||||||||||||||||
Sbjct: 86239 caagctttgtaaatatccctcaacagacacag 86270
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1711 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78933 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 78992
Query: 1771 gtgcagcctcccccacctcaccaa 1794
||||||||||||||||||||||||
Sbjct: 78993 gtgcagcctcccccacctcaccaa 79016
Score = 131 bits (66), Expect = 2e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1629 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78767 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 78826
Query: 1689 ccgccg 1694
||||||
Sbjct: 78827 ccgccg 78832
>Sscrofa_Chr02
|| Length = 162569375
Score = 236 bits (119), Expect = 5e-59
Identities = 389/479 (81%)
Strand = Plus / Minus
Query: 399 caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
|||||||| || || || |||||||| || || ||||| |||||||| |||||| |||||
Sbjct: 66394193 caggatgagttccacccgttcatcgaggcgctgctgcctcacgtccgcgccttctcctac 66394134
Query: 459 acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
|| ||||||||||||||||| || || || || ||||||||||| || || ||||| |||
Sbjct: 66394133 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcacgagaagcggatg 66394074
Query: 519 tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
||||| || || ||| |||| |||||||| ||| |||| | || || || ||| |||||
Sbjct: 66394073 tcaaaggacgaggagcgagcggtgaaggacgagctgctgggcgagaagcctgagatcaag 66394014
Query: 579 cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
||||||||||| ||||| || ||||||||| |||| ||||||||||| ||||||| ||||
Sbjct: 66394013 cagaagtgggcatcccggctgctggccaagctgcgcaaagacatccggcccgagttccga 66393954
Query: 639 gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
||||| ||||| || || | || || || ||||| || || || || || ||||||||
Sbjct: 66393953 gaggactttgtgctgaccatcacgggcaagaagcccccctgctgcgtgctctccaacccc 66393894
Query: 699 gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggagg 758
|||||||| |||||||| || | ||||||||||| |||||||| ||||| || ||| ||
Sbjct: 66393893 gaccagaagggcaagatccggcggattgactgccttcgccaggccgacaaggtgtggcgg 66393834
Query: 759 ttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgag 818
|||||||||| ||||||||||| ||||| || || || || ||||||||||| || |||
Sbjct: 66393833 ctggacctggtcatggtgattttgtttaaggggatccccctggaaagtactgacggggag 66393774
Query: 819 cgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 877
|| || ||||| || |||||||| ||||| || || || |||||||| ||||||||
Sbjct: 66393773 cggctctacaagtcgccccagtgctcgaaccccggcctgtgcgtccagccacatcacat 66393715
Score = 184 bits (93), Expect = 1e-43
Identities = 306/377 (81%)
Strand = Plus / Minus
Query: 399 caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
|||||||| || || || |||||||| || || ||||| |||||||| ||||||||||||
Sbjct: 75812775 caggatgagttccacccattcatcgaggcgctgctgcctcacgtccgcgccttcgcctac 75812716
Query: 459 acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
|| ||||||||||||||||| || || || || ||||||||||| ||||| ||||| |||
Sbjct: 75812715 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcatgagaagcggatg 75812656
Query: 519 tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
|||||||| || ||| | || |||||||| ||| |||| | || || | |||||||||
Sbjct: 75812655 tcaaaagatgaggagcgcgcggtgaaggacgagctgctgggcgagaaggccgaggtcaag 75812596
Query: 579 cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
|||||||||||||| || || ||||||||| |||| || |||||||| ||||| | |||
Sbjct: 75812595 cagaagtgggcgtcgcggctgctggccaagctgcgcaaggacatccggcccgaatgccgc 75812536
Query: 639 gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
||||| ||||| || | | || || || ||| ||||| | || || || ||||||||
Sbjct: 75812535 gaggactttgtgctggccatcaccggcaagaaggcgccaggctgcgtgctctccaacccc 75812476
Query: 699 gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggagg 758
|||||||| ||||||||||| | || |||||||| |||||||| ||||| || ||| ||
Sbjct: 75812475 gaccagaagggcaagatgcgccgcatcgactgcctgcgccaggccgacaaggtgtggcgg 75812416
Query: 759 ttggacctggttatggt 775
|||||||||| |||||
Sbjct: 75812415 ctggacctggtcatggt 75812399
>gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816
Length = 96638
Score = 172 bits (87), Expect = 6e-40
Identities = 273/335 (81%)
Strand = Plus / Minus
Query: 399 caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
|||||||| || || || |||||||| || || ||||| |||||||| |||||| |||||
Sbjct: 88576 caggatgagttccacccgttcatcgaggcgctgctgcctcacgtccgcgccttctcctac 88517
Query: 459 acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
|| ||||||||||||||||| || || || || ||||||||||| || || ||||| |||
Sbjct: 88516 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcacgagaagcggatg 88457
Query: 519 tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
||||| || || ||| |||| |||||||| ||| |||| | || || || ||| |||||
Sbjct: 88456 tcaaaggacgaggagcgagcggtgaaggacgagctgctgggcgagaagcctgagatcaag 88397
Query: 579 cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
||||||||||| ||||| || ||||||||| |||| ||||||||||| ||||||| ||||
Sbjct: 88396 cagaagtgggcatcccggctgctggccaagctgcgcaaagacatccggcccgagttccga 88337
Query: 639 gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
||||| ||||| || || | || || || ||||| || || || || || ||||||||
Sbjct: 88336 gaggactttgtgctgaccatcacgggcaagaagcccccctgctgcgtgctctccaacccc 88277
Query: 699 gaccagaaaggcaagatgcgaagaattgactgcct 733
|||||||| |||||||| || | |||||||||||
Sbjct: 88276 gaccagaagggcaagatccggcggattgactgcct 88242
>Sscrofa_Chr01
|| Length = 315321322
Score = 129 bits (65), Expect = 8e-27
Identities = 284/357 (79%)
Strand = Plus / Plus
Query: 399 caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
|||||||||||||| || |||||||| ||||| || || || ||||| || |||||||
Sbjct: 231964137 caggatgaatttcacccgttcatcgaggcactacttccacatgtccgtgcaatcgcctat 231964196
Query: 459 acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
|| ||||||||||||||||| || ||||| || ||||| || || || || ||||| |||
Sbjct: 231964197 acttggttcaacctgcaggctcggaaacgcaagtactttaaaaagcacgagaagcgaatg 231964256
Query: 519 tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
||||| || ||||| ||||| || || |||||| | || || ||||| || || ||||
Sbjct: 231964257 tcaaaggatgaagaaagagcagtcaaagatgagcttctcagcgaaaagcctgaaatcaaa 231964316
Query: 579 cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
||||||||||| ||| | || |||||||| |||| ||||| ||||| | |||||||||
Sbjct: 231964317 cagaagtgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccga 231964376
Query: 639 gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
||||| ||||| || || || || || || |||| || || ||||| | ||||| ||
Sbjct: 231964377 gaggactttgtgctcaccgtgactggcaagaagcacccgtgctgtgtcttatccaatccc 231964436
Query: 699 gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctgg 755
|||||||| || ||||| | ||||| |||||||| || ||||||||||||||||||
Sbjct: 231964437 gaccagaagggtaagattaggagaatcgactgcctgcgacaggcagacaaagtctgg 231964493
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 67,059,278
Number of extensions: 434
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 26
Length of query: 2348
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2326
Effective length of database: 2,808,408,574
Effective search space: 6532358343124
Effective search space used: 6532358343124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)