Animal-Genome cDNA 20110601C-002116


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].             647   0.0  
Alignment   gi|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taur...   504   e-142
Alignment   gi|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [B...   474   e-133
Alignment   gi|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].             431   e-120
Alignment   gi|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].             427   e-119
Alignment   gi|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos...   343   3e-94

>ref|NP_001033298.1| nuclear factor 1 A-type [Bos taurus].
          Length = 462

 Score =  647 bits (1670), Expect = 0.0
 Identities = 335/462 (72%), Positives = 335/462 (72%)
 Frame = +3

Query: 516  MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 695
            MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN
Sbjct: 1    MSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSN 60

Query: 696  PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 875
            PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH
Sbjct: 61   PDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHH 120

Query: 876  IGVSVKELDLYLAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTE 1055
            IGVSVKELDLYLAYFVH                 IKDQPENGHLGFQDSFVTSGVFSVTE
Sbjct: 121  IGVSVKELDLYLAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTE 180

Query: 1056 LVRVSQTPIAAGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDS 1235
            LVRVSQTPIAAGTGPNF              PGAM                  VEDEMDS
Sbjct: 181  LVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDS 240

Query: 1236 PGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFT 1415
            PGEEPFYT              WHEVEPGMPSPTTL                  LGTAFT
Sbjct: 241  PGEEPFYTGQGRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFT 300

Query: 1416 QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 1595
            QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA
Sbjct: 301  QHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDA 360

Query: 1596 GQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGA 1775
            GQQAGQVGFLNPNGSSQGKVHN                                STEGGA
Sbjct: 361  GQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGA 420

Query: 1776 AXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
            A              ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 421  ASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 462


>ref|XP_002688793.1| PREDICTED: nuclear factor I/X-like [Bos taurus].
          Length = 510

 Score =  504 bits (1299), Expect = e-142
 Identities = 284/508 (55%), Positives = 318/508 (62%), Gaps = 9/508 (1%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 18   DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 77

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 78   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 137

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 138  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 197

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 198  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 256

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                       A+                    D  EM+SP ++ FY  T          
Sbjct: 257  ESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 316

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 317  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 373

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     PN
Sbjct: 374  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 428

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GS QGKV                                  + +G A             
Sbjct: 429  GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPSFATTGA 482

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
              ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 483  SSANRFVSIGPRDGNFLNIPQQSQSWFL 510


>ref|XP_872386.2| PREDICTED: nuclear factor I/X-like isoform 2 [Bos taurus].
          Length = 440

 Score =  474 bits (1220), Expect = e-133
 Identities = 257/419 (61%), Positives = 284/419 (67%), Gaps = 9/419 (2%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                A+                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVALGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 302  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358

Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 359  GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|NP_001019745.1| nuclear factor 1 C-type [Bos taurus].
          Length = 428

 Score =  431 bits (1107), Expect = e-120
 Identities = 247/432 (57%), Positives = 278/432 (64%), Gaps = 17/432 (3%)
 Frame = +3

Query: 381  SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
            SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL 
Sbjct: 4    SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63

Query: 561  EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
            EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64   EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 741  ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
            ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124  ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 921  VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
            V                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+ 
Sbjct: 184  VRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240

Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
             GTGPNF              P   G                    +E+++D+     +Y
Sbjct: 241  TGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300

Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
            T              W E +E G+ SP                     L ++FTQHHRPV
Sbjct: 301  T---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356

Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
            I   +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C 
Sbjct: 357  IAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415

Query: 1590 DAGQQAGQVGFL 1625
             A QQ G   +L
Sbjct: 416  PASQQPGPSWYL 427


>ref|NP_001069572.1| nuclear factor 1 B-type [Bos taurus].
          Length = 420

 Score =  427 bits (1098), Expect = e-119
 Identities = 239/421 (56%), Positives = 266/421 (63%), Gaps = 11/421 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 Q 1601
            Q
Sbjct: 412  Q 412


>ref|XP_002688994.1| PREDICTED: Nuclear factor 1 C-type-like [Bos taurus].
          Length = 189

 Score =  343 bits (881), Expect = 3e-94
 Identities = 167/181 (92%), Positives = 172/181 (95%)
 Frame = +3

Query: 381 SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
           SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL 
Sbjct: 4   SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63

Query: 561 EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
           EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64  EKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 741 ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
           ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124 ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 921 V 923
           V
Sbjct: 184 V 184


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,685,732
Number of extensions: 2443020
Number of successful extensions: 8171
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8126
Number of HSP's successfully gapped: 9
Length of query: 782
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,041,694
Effective search space: 9436018368
Effective search space used: 9436018368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (...   729   0.0  
Alignment   gi|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (...   509   e-144
Alignment   gi|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   473   e-133
Alignment   gi|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   466   e-131
Alignment   gi|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   466   e-131
Alignment   gi|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   464   e-130
Alignment   gi|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT...   455   e-128
Alignment   gi|XP_531936.2| PREDICTED: similar to Nuclear factor 1 B-type (...   442   e-124
Alignment   gi|XP_867203.1| PREDICTED: similar to nuclear factor I/X isofor...   437   e-122
Alignment   gi|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (...   435   e-122

>ref|XP_536691.2| PREDICTED: similar to Nuclear factor 1 A-type (Nuclear factor 1/A)
            (NF1-A) (NFI-A) (NF-I/A) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
          Length = 507

 Score =  729 bits (1881), Expect = 0.0
 Identities = 373/500 (74%), Positives = 373/500 (74%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 8    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 67

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 68   KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 127

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH     
Sbjct: 128  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 187

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF     
Sbjct: 188  QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 247

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
                     PGAM                  VEDEMDSPGEEPFYT              
Sbjct: 248  ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 307

Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
            WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 308  WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 367

Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
            FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 368  FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 427

Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
                                            STEGGAA              ANRFVSV
Sbjct: 428  PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 487

Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
            GPRDPSFVNIPQQTQSWYLG
Sbjct: 488  GPRDPSFVNIPQQTQSWYLG 507


>ref|XP_542036.2| PREDICTED: similar to Nuclear factor 1 X-type (Nuclear factor 1/X)
            (NF1-X) (NFI-X) (NF-I/X) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
            familiaris].
          Length = 501

 Score =  509 bits (1312), Expect = e-144
 Identities = 286/514 (55%), Positives = 320/514 (62%), Gaps = 9/514 (1%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 302  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358

Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQV 1616
             SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ 
Sbjct: 359  GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ- 417

Query: 1617 GFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXX 1796
                PNGS QGKV                                  + +G A       
Sbjct: 418  ----PNGSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPS 467

Query: 1797 XXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
                    ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 468  FATTGASSANRFVSIGPRDGNFLNIPQQSQSWFL 501


>ref|XP_867244.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 8 [Canis familiaris].
          Length = 440

 Score =  473 bits (1216), Expect = e-133
 Identities = 256/419 (61%), Positives = 283/419 (67%), Gaps = 9/419 (2%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 302  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358

Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 359  GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|XP_867232.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 7 [Canis familiaris].
          Length = 433

 Score =  466 bits (1199), Expect = e-131
 Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 122  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 182  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                        +                    D  EM+SP ++ FY  T          
Sbjct: 241  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 301  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 358  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410


>ref|XP_867214.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 6 [Canis familiaris].
          Length = 457

 Score =  466 bits (1199), Expect = e-131
 Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 26   DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 85

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 86   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 145

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 146  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 205

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 206  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 264

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                        +                    D  EM+SP ++ FY  T          
Sbjct: 265  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 324

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 325  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 381

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 382  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 434


>ref|XP_867181.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 3 [Canis familiaris].
          Length = 434

 Score =  464 bits (1193), Expect = e-130
 Identities = 252/418 (60%), Positives = 280/418 (66%), Gaps = 8/418 (1%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRA 1451
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 302  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358

Query: 1452 SPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
            +     S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 359  A-----SALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 411


>ref|XP_867173.1| PREDICTED: similar to nuclear factor I/X (CCAAT-binding transcription
            factor) isoform 2 [Canis familiaris].
          Length = 445

 Score =  455 bits (1171), Expect = e-128
 Identities = 252/425 (59%), Positives = 281/425 (66%), Gaps = 15/425 (3%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  H---XXXXXXXXXXXXXXXXXIKDQPENGHL---GFQDSFVTSGVFSVTELVRVSQTPIA 1085
            H                    +  +P   HL    FQD FVTSGV++VTELVRVSQTP+A
Sbjct: 183  HTPGSWEEQDGNPSTEMGCSLLSSKP--AHLEVTDFQDCFVTSGVWNVTELVRVSQTPVA 240

Query: 1086 AGTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY- 1256
              +GPNF                 +                    D  EM+SP ++ FY 
Sbjct: 241  TASGPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYP 300

Query: 1257 -TXXXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
             T               ++V+ G   P +L                     AFT H  PV
Sbjct: 301  GTGRSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPV 357

Query: 1434 ITGPR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AG 1598
            + G R  SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +G
Sbjct: 358  LAGVRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSG 417

Query: 1599 QQAGQ 1613
            Q  GQ
Sbjct: 418  QATGQ 422


>ref|XP_531936.2| PREDICTED: similar to Nuclear factor 1 B-type (Nuclear factor 1/B)
            (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) isoform 1 [Canis
            familiaris].
          Length = 494

 Score =  442 bits (1137), Expect = e-124
 Identities = 267/523 (51%), Positives = 299/523 (57%), Gaps = 13/523 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
            Q +       PN S Q  GKV                                  STE  
Sbjct: 412  QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAY 463

Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
             A              ANR+V + PRDPSF++   Q QSWYLG
Sbjct: 464  TA---------SGTSQANRYVGLSPRDPSFLH---QQQSWYLG 494


>ref|XP_867203.1| PREDICTED: similar to nuclear factor I/X isoform 5 [Canis
            familiaris].
          Length = 399

 Score =  437 bits (1123), Expect = e-122
 Identities = 244/418 (58%), Positives = 267/418 (63%), Gaps = 8/418 (1%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRA 1451
                       ++V+ G P  T                                     A
Sbjct: 302  AAGSSQSSGWPNDVDAGSPRAT-------------------------------------A 324

Query: 1452 SPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
            S    PST       IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 325  SALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 376


>ref|XP_542179.2| PREDICTED: similar to Nuclear factor 1 C-type (Nuclear factor 1/C)
            (NF1-C) (NFI-C) (NF-I/C) (CCAAT-box binding transcription
            factor) (CTF) (TGGCA-binding protein) [Canis familiaris].
          Length = 569

 Score =  435 bits (1119), Expect = e-122
 Identities = 267/528 (50%), Positives = 308/528 (58%), Gaps = 18/528 (3%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            ++ S L   QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 64   LLTSVLSCPQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 123

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LL EK EVKQKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDC
Sbjct: 124  LLGEKAEVKQKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDC 183

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYL
Sbjct: 184  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYL 243

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQT 1076
            AYFV                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+T
Sbjct: 244  AYFVRERDAEQSGSPRAGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRT 300

Query: 1077 PIAAGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEE 1247
            P+  GTGPNF              P   G                    +E+++D+    
Sbjct: 301  PVVTGTGPNFSLGELQGHLAYDLNPASTGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGG 360

Query: 1248 PFYTXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHH 1424
             +YT              W E +E G+ SP                     L ++FTQHH
Sbjct: 361  DYYT---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFHSPSPQDSPRL-SSFTQHH 416

Query: 1425 RPVI---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQL 1580
            RPVI   +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L
Sbjct: 417  RPVIAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSL 475

Query: 1581 VCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 1760
             C  A QQ G +     NGS Q K+ +                                +
Sbjct: 476  ACDPASQQPGPL-----NGSGQLKMSS------HCLSAQMLAPPPPGLPRLALPPATKPT 524

Query: 1761 TEGGAAXXXXXXXXXXXXXXANR-FVSVGPRDPSFVNIPQQTQSWYLG 1901
            +EGG+               ANR FV +GPRDP+ +    Q QSWYLG
Sbjct: 525  SEGGSTSPTSPSYSTPGTSPANRSFVGLGPRDPAGI---YQAQSWYLG 569


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,962,246
Number of extensions: 2436036
Number of successful extensions: 9291
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 9172
Number of HSP's successfully gapped: 27
Length of query: 782
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 671
Effective length of database: 15,174,208
Effective search space: 10181893568
Effective search space used: 10181893568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapi...   751   0.0  
Alignment   gi|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapi...   748   0.0  
Alignment   gi|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].    697   0.0  
Alignment   gi|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapi...   729   0.0  
Alignment   gi|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].              483   e-136
Alignment   gi|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapi...   444   e-124
Alignment   gi|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].    436   e-122
Alignment   gi|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].    434   e-121
Alignment   gi|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].    427   e-119
Alignment   gi|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapi...   409   e-114

>ref|NP_001138984.1| nuclear factor 1 A-type isoform 4 [Homo sapiens].
          Length = 554

 Score =  751 bits (1939), Expect = 0.0
 Identities = 384/511 (75%), Positives = 384/511 (75%)
 Frame = +3

Query: 369  AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 548
            AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD
Sbjct: 44   AVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKD 103

Query: 549  ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 728
            ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID
Sbjct: 104  ELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRID 163

Query: 729  CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 908
            CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY
Sbjct: 164  CLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLY 223

Query: 909  LAYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA 1088
            LAYFVH                 IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA
Sbjct: 224  LAYFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAA 283

Query: 1089 GTGPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            GTGPNF              PGAM                  VEDEMDSPGEEPFYT   
Sbjct: 284  GTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQG 343

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPR
Sbjct: 344  RSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPR 403

Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN 1628
            ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN
Sbjct: 404  ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLN 463

Query: 1629 PNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXX 1808
            PNGSSQGKVHN                                STEGGAA          
Sbjct: 464  PNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTP 523

Query: 1809 XXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
                ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 524  STSPANRFVSVGPRDPSFVNIPQQTQSWYLG 554


>ref|NP_001128145.1| nuclear factor 1 A-type isoform 1 [Homo sapiens].
          Length = 509

 Score =  748 bits (1931), Expect = 0.0
 Identities = 382/509 (75%), Positives = 382/509 (75%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1    MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61   LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181  YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
            GPNF              PGAM                  VEDEMDSPGEEPFYT     
Sbjct: 241  GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300

Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
                     WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRAS
Sbjct: 301  PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360

Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
            PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361  PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GSSQGKVHN                                STEGGAA            
Sbjct: 421  GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPST 480

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
              ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 481  SPANRFVSVGPRDPSFVNIPQQTQSWYLG 509


>ref|NP_005586.1| nuclear factor 1 A-type isoform 2 [Homo sapiens].
          Length = 498

 Score =  697 bits (1798), Expect(2) = 0.0
 Identities = 355/468 (75%), Positives = 355/468 (75%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1    MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61   LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181  YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
            GPNF              PGAM                  VEDEMDSPGEEPFYT     
Sbjct: 241  GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300

Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
                     WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRAS
Sbjct: 301  PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360

Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
            PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361  PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAA 1778
            GSSQGKVHN                                STEGGAA
Sbjct: 421  GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAA 468



 Score = 58.5 bits (140), Expect(2) = 0.0
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = +2

Query: 1877 TDTVLVPGIKVAASHHPPDRPPDPFSTL 1960
            T  +LVPGIKVAASHHPPDRPPDPFSTL
Sbjct: 471  TSPILVPGIKVAASHHPPDRPPDPFSTL 498


>ref|NP_001138983.1| nuclear factor 1 A-type isoform 3 [Homo sapiens].
          Length = 501

 Score =  729 bits (1881), Expect = 0.0
 Identities = 373/500 (74%), Positives = 373/500 (74%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 2    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH     
Sbjct: 122  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 181

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF     
Sbjct: 182  QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 241

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
                     PGAM                  VEDEMDSPGEEPFYT              
Sbjct: 242  ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 301

Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
            WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 302  WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 361

Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
            FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 362  FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 421

Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
                                            STEGGAA              ANRFVSV
Sbjct: 422  PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 481

Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
            GPRDPSFVNIPQQTQSWYLG
Sbjct: 482  GPRDPSFVNIPQQTQSWYLG 501


>ref|NP_002492.2| nuclear factor 1 X-type [Homo sapiens].
          Length = 441

 Score =  483 bits (1244), Expect = e-136
 Identities = 261/422 (61%), Positives = 288/422 (68%), Gaps = 9/422 (2%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1    MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61   LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +
Sbjct: 181  YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
            GPNF                 +                    D  EM+SP ++ FY  T 
Sbjct: 240  GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTG 299

Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
                          ++V+ G   P +L                     AFT H  PV+ G
Sbjct: 300  RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG 356

Query: 1443 PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQA 1607
             R  SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  
Sbjct: 357  VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT 416

Query: 1608 GQ 1613
            GQ
Sbjct: 417  GQ 418


>ref|NP_001177666.1| nuclear factor 1 B-type isoform 1 [Homo sapiens].
          Length = 494

 Score =  444 bits (1143), Expect = e-124
 Identities = 268/523 (51%), Positives = 300/523 (57%), Gaps = 13/523 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
            Q +       PNGS Q  GKV                                  STE  
Sbjct: 412  QTS------QPNGSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLSMTDTKPITTSTEAY 463

Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
             A              ANR+V + PRDPSF++   Q QSWYLG
Sbjct: 464  TA---------SGTSQANRYVGLSPRDPSFLH---QQQSWYLG 494


>ref|NP_995315.1| nuclear factor 1 C-type isoform 2 [Homo sapiens].
          Length = 499

 Score =  436 bits (1121), Expect = e-122
 Identities = 266/518 (51%), Positives = 305/518 (58%), Gaps = 18/518 (3%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPEVKQ
Sbjct: 2    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV      
Sbjct: 122  DLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAE 181

Query: 942  XXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF 1106
                          DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+  GTGPNF
Sbjct: 182  QSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNF 238

Query: 1107 XXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXX 1277
                          P   G                    +E+++D+     +YT      
Sbjct: 239  SLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYT---SPS 295

Query: 1278 XXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVI---TGP 1445
                    W E +E G+ SP                     L ++FTQHHRPVI   +G 
Sbjct: 296  SPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPVIAVHSGI 354

Query: 1446 RASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAG 1610
              SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C  A QQ G
Sbjct: 355  ARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQPG 413

Query: 1611 QVGFLNPNGSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXX 1790
             +     NGS Q K+ +                                ++EGGA     
Sbjct: 414  PL-----NGSGQLKMPS----HCLSAQMLAPPPPGLPRLALPPATKPATTSEGGATSPTS 464

Query: 1791 XXXXXXXXXXANR-FVSVGPRDPSFVNIPQQTQSWYLG 1901
                      ANR FV +GPRDP+ +    Q QSWYLG
Sbjct: 465  PSYSPPDTSPANRSFVGLGPRDPAGI---YQAQSWYLG 499


>ref|NP_005588.2| nuclear factor 1 C-type isoform 1 [Homo sapiens].
          Length = 428

 Score =  434 bits (1116), Expect = e-121
 Identities = 248/432 (57%), Positives = 280/432 (64%), Gaps = 17/432 (3%)
 Frame = +3

Query: 381  SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
            SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL 
Sbjct: 4    SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63

Query: 561  EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
            EKPEVKQKWASRLLAKLRKDIRPE REDFVL++TGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64   EKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 741  ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
            ADKVWRLDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124  ADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 921  VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
            V                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+ 
Sbjct: 184  VRERDAEQSGSPRTGMG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240

Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
             GTGPNF              P   G                    +E+++D+     +Y
Sbjct: 241  TGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300

Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
            T              W E +E G+ SP                     L ++FTQHHRPV
Sbjct: 301  T---SPSSPTSSSRNWTEDMEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356

Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
            I   +G   SPH + S LHFPT+ I+ Q    YF H AIRY    +PQ+ LK+ V L C 
Sbjct: 357  IAVHSGIARSPHPS-SALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415

Query: 1590 DAGQQAGQVGFL 1625
             A QQ G   +L
Sbjct: 416  PASQQPGPSWYL 427


>ref|NP_005587.2| nuclear factor 1 B-type isoform 3 [Homo sapiens].
          Length = 420

 Score =  427 bits (1098), Expect = e-119
 Identities = 239/421 (56%), Positives = 266/421 (63%), Gaps = 11/421 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPSSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 Q 1601
            Q
Sbjct: 412  Q 412


>ref|NP_001177667.1| nuclear factor 1 B-type isoform 2 [Homo sapiens].
          Length = 446

 Score =  409 bits (1051), Expect = e-114
 Identities = 234/419 (55%), Positives = 259/419 (61%), Gaps = 12/419 (2%)
 Frame = +3

Query: 381  SPLCLT-QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 557
            S LC    DEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL
Sbjct: 29   STLCFGFSDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELL 88

Query: 558  SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 737
            SEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDCLR
Sbjct: 89   SEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLR 148

Query: 738  QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 917
            QADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+LAY
Sbjct: 149  QADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAY 208

Query: 918  FVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 1097
            +V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  GTG
Sbjct: 209  YVQEQDSGQSGSPSH------NDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTG 262

Query: 1098 PNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
             NF                G                    +++ M+      FY      
Sbjct: 263  VNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---PSP 319

Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
                     WHE +  M SPTT+                    + F QHH P I G   S
Sbjct: 320  SSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSASPQDSSPRLSTFPQHHHPGIPGVAHS 379

Query: 1455 PHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQ 1601
              +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + Q
Sbjct: 380  VISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQ 438


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 89,365,310
Number of extensions: 2392371
Number of successful extensions: 8527
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8473
Number of HSP's successfully gapped: 16
Length of query: 782
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,671,124
Effective search space: 9858995328
Effective search space used: 9858995328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].    745   0.0  
Alignment   gi|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus muscu...   726   0.0  
Alignment   gi|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus muscu...   678   0.0  
Alignment   gi|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus muscu...   500   e-141
Alignment   gi|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus muscu...   483   e-136
Alignment   gi|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].    447   e-125
Alignment   gi|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus muscu...   441   e-123
Alignment   gi|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus muscu...   432   e-121
Alignment   gi|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].    432   e-121
Alignment   gi|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].    431   e-120

>ref|NP_035035.1| nuclear factor 1 A-type isoform 2 [Mus musculus].
          Length = 509

 Score =  745 bits (1924), Expect = 0.0
 Identities = 380/509 (74%), Positives = 382/509 (75%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1    MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61   LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181  YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
            GPNF              PGAM                  VEDEMDSPGEEPFYT     
Sbjct: 241  GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300

Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
                     WHEVEPG+PSP+TL                  LGTAFTQHHRPVITGPRAS
Sbjct: 301  PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 360

Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
            PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 361  PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 420

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GSSQGKVHN                                STEGGAA            
Sbjct: 421  GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPST 480

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
              ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 481  SPANRFVSVGPRDPSFVNIPQQTQSWYLG 509


>ref|NP_001116424.1| nuclear factor 1 A-type isoform 1 [Mus musculus].
          Length = 532

 Score =  726 bits (1874), Expect = 0.0
 Identities = 371/500 (74%), Positives = 373/500 (74%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 33   DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 92

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 93   KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 152

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH     
Sbjct: 153  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 212

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF     
Sbjct: 213  QSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 272

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
                     PGAM                  VEDEMDSPGEEPFYT              
Sbjct: 273  ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 332

Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
            WHEVEPG+PSP+TL                  LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 333  WHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 392

Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
            FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 393  FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 452

Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
                                            STEGGAA              ANRFVSV
Sbjct: 453  PFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 512

Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
            GPRDPSFVNIPQQTQSWYLG
Sbjct: 513  GPRDPSFVNIPQQTQSWYLG 532


>ref|NP_001116425.1| nuclear factor 1 A-type isoform 3 [Mus musculus].
          Length = 466

 Score =  678 bits (1749), Expect = 0.0
 Identities = 355/509 (69%), Positives = 355/509 (69%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL
Sbjct: 1    MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL
Sbjct: 61   LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT
Sbjct: 181  YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 240

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXX 1274
            GPNF              PGAM                  VEDEMDSPGEEPFYT     
Sbjct: 241  GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 300

Query: 1275 XXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRAS 1454
                     WHEVEP  P                                          
Sbjct: 301  PGSGSQSSGWHEVEPASP------------------------------------------ 318

Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 1634
             HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN
Sbjct: 319  -HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 377

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GSSQGKVHN                                STEGGAA            
Sbjct: 378  GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPST 437

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYLG 1901
              ANRFVSVGPRDPSFVNIPQQTQSWYLG
Sbjct: 438  SPANRFVSVGPRDPSFVNIPQQTQSWYLG 466


>ref|NP_001075450.1| nuclear factor 1 X-type isoform 3 [Mus musculus].
          Length = 494

 Score =  500 bits (1287), Expect = e-141
 Identities = 282/508 (55%), Positives = 316/508 (62%), Gaps = 9/508 (1%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 122  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 182  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                        +                    D  EM+SP ++ FY  T          
Sbjct: 241  ESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 301  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     PN
Sbjct: 358  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 412

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GS QGKV                                  + +G A             
Sbjct: 413  GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKTTSTAPDGAALTPPSPSFTTTGA 466

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
              ANRFVS+G RD +F+NIPQQ+QSW+L
Sbjct: 467  SSANRFVSIGSRDGNFLNIPQQSQSWFL 494


>ref|NP_001075451.1| nuclear factor 1 X-type isoform 1 [Mus musculus].
          Length = 441

 Score =  483 bits (1244), Expect = e-136
 Identities = 261/422 (61%), Positives = 288/422 (68%), Gaps = 9/422 (2%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1    MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61   LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +
Sbjct: 181  YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
            GPNF                 +                    D  EM+SP ++ FY  T 
Sbjct: 240  GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTG 299

Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
                          ++V+ G   P +L                     AFT H  PV+ G
Sbjct: 300  RSPAAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAG 356

Query: 1443 PR-ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQA 1607
             R  SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  
Sbjct: 357  VRPGSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQAT 416

Query: 1608 GQ 1613
            GQ
Sbjct: 417  GQ 418


>ref|NP_035036.1| nuclear factor 1 X-type isoform 2 [Mus musculus].
          Length = 400

 Score =  447 bits (1151), Expect = e-125
 Identities = 249/421 (59%), Positives = 272/421 (64%), Gaps = 8/421 (1%)
 Frame = +3

Query: 375  MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 554
            MYSP CLTQDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDEL
Sbjct: 1    MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDEL 60

Query: 555  LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 734
            L EKPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL
Sbjct: 61   LGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL 120

Query: 735  RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 914
            RQADKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLA
Sbjct: 121  RQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLA 180

Query: 915  YFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 1094
            YFVH                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +
Sbjct: 181  YFVHTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATAS 239

Query: 1095 GPNFXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TX 1262
            GPNF                 +                    D  EM+SP ++ FY  T 
Sbjct: 240  GPNFSLADLESPSYYNINQVTLGRRSITSPPSTSSTKRPKSIDDSEMESPVDDVFYPGTG 299

Query: 1263 XXXXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITG 1442
                          ++V+ G P  T                                   
Sbjct: 300  RSPAAGSSQSSGWPNDVDAGSPRAT----------------------------------- 324

Query: 1443 PRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAG 1610
              AS    PST       IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  G
Sbjct: 325  --ASALHFPST------SIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATG 376

Query: 1611 Q 1613
            Q
Sbjct: 377  Q 377


>ref|NP_001106680.1| nuclear factor 1 B-type isoform 1 [Mus musculus].
          Length = 570

 Score =  441 bits (1133), Expect = e-123
 Identities = 263/515 (51%), Positives = 295/515 (57%), Gaps = 13/515 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
            Q +       PN S Q  GKV                                  STEG 
Sbjct: 412  QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEGE 463

Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQ 1877
            AA              ANR+V + PRDPSF++  Q
Sbjct: 464  AASPTATTYTASGTSQANRYVGLSPRDPSFLHQQQ 498


>ref|NP_001106681.1| nuclear factor 1 B-type isoform 2 [Mus musculus].
          Length = 561

 Score =  432 bits (1111), Expect = e-121
 Identities = 261/515 (50%), Positives = 293/515 (56%), Gaps = 13/515 (2%)
 Frame = +3

Query: 372  VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
            +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1    MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552  LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
            LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61   LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732  LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
            LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121  LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912  AYFVHXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAG 1091
            AY+V                    D  +N     +DSFV SGVF+V+ELVRVS+TPI  G
Sbjct: 181  AYYVQEQDSGQSGSPSH------SDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQG 234

Query: 1092 TGPNF-XXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXX 1268
            TG NF                G                    +++ M+      FY    
Sbjct: 235  TGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFY---P 291

Query: 1269 XXXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR 1448
                       WHE +  M SPTT+                    + F QHH P I G  
Sbjct: 292  SPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVA 351

Query: 1449 ASPHAT-----PSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCPDAG 1598
             S  +T     PS L FPT  I+   P  YFSHP IRY    +PQ+TLK +V    P + 
Sbjct: 352  HSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSP 411

Query: 1599 QQAGQVGFLNPNGSSQ--GKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGG 1772
            Q +       PN S Q  GKV                                  STE  
Sbjct: 412  QTS------QPNSSGQVVGKV--PGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAY 463

Query: 1773 AAXXXXXXXXXXXXXXANRFVSVGPRDPSFVNIPQ 1877
             A              ANR+V + PRDPSF++  Q
Sbjct: 464  TA---------SGTSQANRYVGLSPRDPSFLHQQQ 489


>ref|NP_081032.2| nuclear factor 1 C-type isoform b [Mus musculus].
          Length = 428

 Score =  432 bits (1110), Expect = e-121
 Identities = 248/432 (57%), Positives = 278/432 (64%), Gaps = 17/432 (3%)
 Frame = +3

Query: 381  SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
            SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL 
Sbjct: 4    SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63

Query: 561  EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
            EK EVKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64   EKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 741  ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
            ADKVWRLDLVMVILFKGIPLESTDGERLVK+  C++P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124  ADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 921  VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
            V                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+ 
Sbjct: 184  VRERDAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240

Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
             GTGPNF              P   G                    +E+++D+     +Y
Sbjct: 241  TGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300

Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
            T              W E +E G+ SP                     L ++FTQHHRPV
Sbjct: 301  T---SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356

Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
            I   +G   SPH T S LHFP +PI+ Q    YF H AIRY    +PQ+ LK+ V L C 
Sbjct: 357  IAVHSGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415

Query: 1590 DAGQQAGQVGFL 1625
             A QQ G   +L
Sbjct: 416  PATQQPGPSWYL 427


>ref|NP_032714.1| nuclear factor 1 C-type isoform a [Mus musculus].
          Length = 439

 Score =  431 bits (1108), Expect = e-120
 Identities = 247/427 (57%), Positives = 276/427 (64%), Gaps = 17/427 (3%)
 Frame = +3

Query: 381  SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLS 560
            SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL 
Sbjct: 4    SPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLG 63

Query: 561  EKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQ 740
            EK EVKQKWASRLLAKLRKDIRPE REDFVL VTGKK P CVLSNPDQKGKMRRIDCLRQ
Sbjct: 64   EKAEVKQKWASRLLAKLRKDIRPECREDFVLAVTGKKAPGCVLSNPDQKGKMRRIDCLRQ 123

Query: 741  ADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYF 920
            ADKVWRLDLVMVILFKGIPLESTDGERLVK+  C++P LCVQPHHIGV+VKELDLYLAYF
Sbjct: 124  ADKVWRLDLVMVILFKGIPLESTDGERLVKAAACAHPVLCVQPHHIGVAVKELDLYLAYF 183

Query: 921  VHXXXXXXXXXXXXXXXXXIKDQPENGHL-----GFQDSFVTSGVFSVTELVRVSQTPIA 1085
            V                    DQ ++  +      FQ+SFVTSGVFSVTEL++VS+TP+ 
Sbjct: 184  VRERDAEQSSSPRTGVG---SDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240

Query: 1086 AGTGPNFXXXXXXXXXXXXXXP---GAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY 1256
             GTGPNF              P   G                    +E+++D+     +Y
Sbjct: 241  TGTGPNFSLGELQGHLAYDLNPASAGMRRTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYY 300

Query: 1257 TXXXXXXXXXXXXXXWHE-VEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPV 1433
            T              W E +E G+ SP                     L ++FTQHHRPV
Sbjct: 301  T---SPNSPTSSSRNWTEDIEGGISSPVKKTEMDKSPFNSPSPQDSPRL-SSFTQHHRPV 356

Query: 1434 I---TGPRASPHATPSTLHFPTSPII-QQPGPYFSHPAIRY----HPQETLKEFVQLVCP 1589
            I   +G   SPH T S LHFP +PI+ Q    YF H AIRY    +PQ+ LK+ V L C 
Sbjct: 357  IAVHSGIARSPHPT-SALHFPATPILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACD 415

Query: 1590 DAGQQAG 1610
             A QQ G
Sbjct: 416  PATQQPG 422


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 75,697,356
Number of extensions: 2005349
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6686
Number of HSP's successfully gapped: 19
Length of query: 782
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 673
Effective length of database: 12,343,635
Effective search space: 8307266355
Effective search space used: 8307266355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scro...   729   0.0  
Alignment   gi|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1...   503   e-142
Alignment   gi|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scro...   473   e-133
Alignment   gi|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2...   466   e-131
Alignment   gi|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus...   395   e-110
Alignment   gi|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus...   355   6e-98
Alignment   gi|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769...   331   1e-90
Alignment   gi|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus...   204   2e-63
Alignment   gi|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1...    94   3e-19

>ref|XP_003128003.2| PREDICTED: nuclear factor 1 A-type [Sus scrofa].
          Length = 501

 Score =  729 bits (1881), Expect = 0.0
 Identities = 373/500 (74%), Positives = 373/500 (74%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ
Sbjct: 2    DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVH     
Sbjct: 122  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADSS 181

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNF     
Sbjct: 182  QSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDL 241

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXX 1301
                     PGAM                  VEDEMDSPGEEPFYT              
Sbjct: 242  ESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSSG 301

Query: 1302 WHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLH 1481
            WHEVEPGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLH
Sbjct: 302  WHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLH 361

Query: 1482 FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 1661
            FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN
Sbjct: 362  FPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN 421

Query: 1662 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSV 1841
                                            STEGGAA              ANRFVSV
Sbjct: 422  PFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSV 481

Query: 1842 GPRDPSFVNIPQQTQSWYLG 1901
            GPRDPSFVNIPQQTQSWYLG
Sbjct: 482  GPRDPSFVNIPQQTQSWYLG 501


>ref|XP_003123381.1| PREDICTED: nuclear factor 1 X-type isoform 1 [Sus scrofa].
          Length = 510

 Score =  503 bits (1295), Expect = e-142
 Identities = 283/508 (55%), Positives = 317/508 (62%), Gaps = 9/508 (1%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 18   DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 77

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 78   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 137

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 138  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 197

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 198  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 256

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                        +                    D  EM+SP ++ FY  T          
Sbjct: 257  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 316

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 317  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 373

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQVGFLNPN 1634
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ     PN
Sbjct: 374  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ-----PN 428

Query: 1635 GSSQGKVHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXX 1814
            GS QGKV                                  + +G A             
Sbjct: 429  GSGQGKV------PGSFLLPPPPPVARPVPLPMPDSKSTSTAPDGAALTPPSPSFATTGA 482

Query: 1815 XXANRFVSVGPRDPSFVNIPQQTQSWYL 1898
              ANRFVS+GPRD +F+NIPQQ+QSW+L
Sbjct: 483  SSANRFVSIGPRDGNFLNIPQQSQSWFL 510


>ref|XP_003354148.1| PREDICTED: nuclear factor 1 X-type [Sus scrofa].
          Length = 440

 Score =  473 bits (1216), Expect = e-133
 Identities = 256/419 (61%), Positives = 283/419 (67%), Gaps = 9/419 (2%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRLQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQA
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQA 122

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
            DKVWRLDLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 123  DKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 182

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPN
Sbjct: 183  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPN 241

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXX 1271
            F                 +                    D  EM+SP ++ FY  T    
Sbjct: 242  FSLADLESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSP 301

Query: 1272 XXXXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR- 1448
                       ++V+ G   P +L                     AFT H  PV+ G R 
Sbjct: 302  AAGSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRP 358

Query: 1449 ASPHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             SP AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 359  GSPRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 417


>ref|XP_003123382.1| PREDICTED: nuclear factor 1 X-type isoform 2 [Sus scrofa].
          Length = 433

 Score =  466 bits (1199), Expect = e-131
 Identities = 253/413 (61%), Positives = 280/413 (67%), Gaps = 9/413 (2%)
 Frame = +3

Query: 402  DEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQ 581
            DEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EKPE+KQ
Sbjct: 2    DEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQ 61

Query: 582  KWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRL 761
            KWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCLRQADKVWRL
Sbjct: 62   KWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRL 121

Query: 762  DLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHXXXXX 941
            DLVMVILFKGIPLESTDGERL KSPQCSNPGLCVQPHHIGV++KELDLYLAYFVH     
Sbjct: 122  DLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPESG 181

Query: 942  XXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXX 1121
                        IK  P NGHL FQD FVTSGV++VTELVRVSQTP+A  +GPNF     
Sbjct: 182  QSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADL 240

Query: 1122 XXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVED--EMDSPGEEPFY--TXXXXXXXXXX 1289
                        +                    D  EM+SP ++ FY  T          
Sbjct: 241  ESPSYYNINQVTLGRRSITSPPSTSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAAGSSQ 300

Query: 1290 XXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-ASPHAT 1466
                 ++V+ G   P +L                     AFT H  PV+ G R  SP AT
Sbjct: 301  SSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGSPRAT 357

Query: 1467 PSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
             S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 358  ASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 410


>ref|XP_003361272.1| PREDICTED: nuclear factor 1 X-type-like [Sus scrofa].
          Length = 406

 Score =  395 bits (1014), Expect = e-110
 Identities = 225/417 (53%), Positives = 253/417 (60%), Gaps = 7/417 (1%)
 Frame = +3

Query: 384  PLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSE 563
            P C  QDEFHPFIEALLPHVRAF+YTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL E
Sbjct: 3    PACRPQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGE 62

Query: 564  KPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQA 743
            KPE+KQKWASRLLAKLRKDIRPE+REDFVLT+TGKKPPCCVLSNPDQKGK+RRIDCL   
Sbjct: 63   KPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCL--- 119

Query: 744  DKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
                                         SPQCSNPGLCVQPHHIGV++KELDLYLAYFV
Sbjct: 120  -----------------------------SPQCSNPGLCVQPHHIGVTIKELDLYLAYFV 150

Query: 924  HXXXXXXXXXXXXXXXXXIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPN 1103
            H                 IK  P NGHL FQD FVTSGV++VTELVRVSQ+ +A  +GPN
Sbjct: 151  HTPESGQSDSSNQQGDADIKPLP-NGHLSFQDCFVTSGVWNVTELVRVSQSXVATASGPN 209

Query: 1104 FXXXXXXXXXXXXXXPGAMXXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFY--TXXXXXX 1277
            F                                     + EM+SP ++ FY  T      
Sbjct: 210  FSLADLESPSYYNINXXXXXXXSLSSFPSTTKRPKSIDDSEMESPVDDVFYPGTGRSPAA 269

Query: 1278 XXXXXXXXWHEVEPGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPR-AS 1454
                     ++V+ G   P +L                     AFT H  PV+ G R  S
Sbjct: 270  GSSQSSGWPNDVDAG---PASLKKSGKLDFCSALSSQGSSPRMAFTHHPLPVLAGVRPGS 326

Query: 1455 PHATPSTLHFPTSPIIQQPGPYFSHPAIRY---HPQETLKEFVQLVCPD-AGQQAGQ 1613
            P AT S LHFP++ IIQQ  PYF+HP IRY   H Q++LKEFVQ VC D +GQ  GQ
Sbjct: 327  PRATASALHFPSTSIIQQSSPYFTHPTIRYHHHHGQDSLKEFVQFVCSDGSGQATGQ 383


>ref|XP_003353568.1| PREDICTED: nuclear factor 1 B-type-like [Sus scrofa].
          Length = 200

 Score =  355 bits (911), Expect = 6e-98
 Identities = 169/184 (91%), Positives = 178/184 (96%)
 Frame = +3

Query: 372 VMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDE 551
           +MYSP+CLTQDEFHPFIEALLPHVRA AYTWFNLQARKRKYFKKHEKRMSK+EERAVKDE
Sbjct: 1   MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDE 60

Query: 552 LLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDC 731
           LLSEKPE+KQKWASRLLAKLRKDIR EYREDFVLTVTGKK PCCVLSNPDQKGK+RRIDC
Sbjct: 61  LLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDC 120

Query: 732 LRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYL 911
           LRQADKVWRLDLVMVILFKGIPLESTDGERL+KSP C+NP LCVQPHHI VSVKELDL+L
Sbjct: 121 LRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFL 180

Query: 912 AYFV 923
           AY+V
Sbjct: 181 AYYV 184


>ref|XP_003354049.1| PREDICTED: hypothetical protein LOC100623769 [Sus scrofa].
          Length = 430

 Score =  331 bits (848), Expect = 1e-90
 Identities = 161/175 (92%), Positives = 166/175 (94%)
 Frame = +3

Query: 399 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 578
           QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSK+EERAVKDELL EK EVK
Sbjct: 141 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKAEVK 200

Query: 579 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 758
           QKWASRLLAKLRKDIRPE REDFVL +TGKK P CVLSNPDQKGKMRRIDCLRQADKVWR
Sbjct: 201 QKWASRLLAKLRKDIRPECREDFVLAITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWR 260

Query: 759 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFV 923
           LDLVMVILFKGIPLESTDGERLVK+ QC +P LCVQPHHIGV+VKELDLYLAYFV
Sbjct: 261 LDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFV 315


>ref|XP_003360991.1| PREDICTED: nuclear factor 1 A-type-like [Sus scrofa].
          Length = 196

 Score =  204 bits (518), Expect(2) = 2e-63
 Identities = 110/154 (71%), Positives = 110/154 (71%)
 Frame = +3

Query: 1317 PGMPSPTTLXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 1496
            PGMPSPTTL                  LGTAFTQHHRPVITGPRASPHATPSTLHFPTSP
Sbjct: 13   PGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSP 72

Query: 1497 IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNXXXXX 1676
            IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHN     
Sbjct: 73   IIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPT 132

Query: 1677 XXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAA 1778
                                       STEGGAA
Sbjct: 133  PMLPPPXXXXXXRPVPLPVPDTKPPTTSTEGGAA 166



 Score = 58.5 bits (140), Expect(2) = 2e-63
 Identities = 25/28 (89%), Positives = 26/28 (92%)
 Frame = +2

Query: 1877 TDTVLVPGIKVAASHHPPDRPPDPFSTL 1960
            T  +LVPGIKVAASHHPPDRPPDPFSTL
Sbjct: 169  TSPILVPGIKVAASHHPPDRPPDPFSTL 196


>ref|XP_001928092.2| PREDICTED: nuclear factor 1 B-type isoform 1 [Sus scrofa].
          Length = 359

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 95/311 (30%), Positives = 118/311 (37%), Gaps = 13/311 (4%)
 Frame = +3

Query: 984  DQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFXXXXXXXXXXXXXX-PGAM 1160
            D PE G+L  +DSFV SGVF+V+ELVRVS+TPI  GTG NF                G  
Sbjct: 21   DVPE-GYL--EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVN 77

Query: 1161 XXXXXXXXXXXXXXXXXXVEDEMDSPGEEPFYTXXXXXXXXXXXXXXWHEVEPGMPSPTT 1340
                              +++ M+      FY               WHE +  M SPTT
Sbjct: 78   LQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRT---WHERDQDMSSPTT 134

Query: 1341 LXXXXXXXXXXXXXXXXXXLGTAFTQHHRPVITGPRASPHAT-----PSTLHFPTSPIIQ 1505
            +                    + F QHH P I G   S  +T     PS L FPT  I+ 
Sbjct: 135  MKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILP 194

Query: 1506 Q-PGPYFSHPAIRY----HPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQ--GKVHNX 1664
              P  YFSHP IRY    +PQ+TLK +V    P + Q +       PN S Q  GKV   
Sbjct: 195  PAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTS------QPNSSGQVVGKV--P 246

Query: 1665 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGGAAXXXXXXXXXXXXXXANRFVSVG 1844
                                           STE   A              ANR+V + 
Sbjct: 247  GHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAYTA---------SGTSQANRYVGLS 297

Query: 1845 PRDPSFVNIPQ 1877
            PRDPSF++  Q
Sbjct: 298  PRDPSFLHQQQ 308


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 57,270,290
Number of extensions: 1686187
Number of successful extensions: 5296
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5261
Number of HSP's successfully gapped: 16
Length of query: 782
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 675
Effective length of database: 8,679,953
Effective search space: 5858968275
Effective search space used: 5858968275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002116
         (2348 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        1063   0.0  
gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130      805   0.0  
Sscrofa_Chr02                                                         236   5e-59
gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816      172   6e-40
Sscrofa_Chr01                                                         129   8e-27

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 1063 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Minus

                                                                             
Query: 398       ccaggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgccta 457
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153493 ccaggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgccta 139153434

                                                                             
Query: 458       cacatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtat 517
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153433 cacatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtat 139153374

                                                                             
Query: 518       gtcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaa 577
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153373 gtcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaa 139153314

                                                                             
Query: 578       gcagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccg 637
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153313 gcagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccg 139153254

                                                                             
Query: 638       agaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccc 697
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153253 agaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccc 139153194

                                                                             
Query: 698       agaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggag 757
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153193 agaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggag 139153134

                                                                             
Query: 758       gttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcga 817
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153133 gttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcga 139153074

                                                                             
Query: 818       gcgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 877
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153073 gcgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 139153014

                                                                         
Query: 878       aggggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 933
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139153013 aggggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcag 139152958



 Score =  805 bits (406), Expect = 0.0
 Identities = 448/465 (96%), Gaps = 1/465 (0%)
 Strand = Plus / Minus

                                                                             
Query: 1884      cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 1943
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771981 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 138771922

                                                                             
Query: 1944      accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 2003
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771921 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 138771862

                                                                             
Query: 2004      gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 2063
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771861 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 138771802

                                                                             
Query: 2064      acagcaaaggccataaccttttgggannnnnnnnnnnnnaatactttagggactgttgta 2123
                 ||||||||||||||||||||||||||             |||||||||||||||||||||
Sbjct: 138771801 acagcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgta 138771742

                                                                             
Query: 2124      attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 2183
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771741 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 138771682

                                                                             
Query: 2184      agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 2243
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771681 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 138771622

                                                                             
Query: 2244      taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 2303
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138771621 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 138771562

                                                              
Query: 2304      ggtgtgaaccctccttgaccagtcagggggcccatggaaaactaa 2348
                 |||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 138771561 ggtgtg-agcctccttgagcagtcagggggcccatggagaactaa 138771518



 Score =  353 bits (178), Expect = 3e-94
 Identities = 184/186 (98%)
 Strand = Plus / Minus

                                                                             
Query: 1443      cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1502
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826555 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 138826496

                                                                             
Query: 1503      cagcagcctgggccttacttctcccacccggccatccgctatcaccctcaggagacgctg 1562
                 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826495 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 138826436

                                                                             
Query: 1563      aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1622
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138826435 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 138826376

                       
Query: 1623      ctcaat 1628
                 ||||||
Sbjct: 138826375 ctcaat 138826370



 Score =  329 bits (166), Expect = 4e-87
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1629      cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1688
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824101 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 138824042

                                                                             
Query: 1689      ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 1748
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138824041 ccgccgccgccaccaccgatggccaggcctgtgcctctgccggtgccagacacaaagcct 138823982

                                                               
Query: 1749      ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 1794
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138823981 ccgaccacgtcaacagaaggaggtgcagcctcccccacctcaccaa 138823936



 Score =  315 bits (159), Expect = 6e-83
 Identities = 166/167 (99%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                             
Query: 82        agcgggaaagggtgcgctatgcctttaacgcccgcgtacagtagacatgtatagtggagt 141
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139158725 agcgggaaagggtgcgctatgcctttaacgcccgcgtacagtagacatgtatagtggagt 139158666

                                                                             
Query: 142       gtagggaaactctaggcggggttaaagttcagctcatggagcggcaatagcgctggctgg 201
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139158665 gtagggaaactctaggcggggttaaagttcagctcatggagcggcaatagcgctggctgg 139158606

                                                                
Query: 202       ctgcagttgagccgagttggaaatgtgaacgcaagaagcaggcttga 248
                 |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 139158605 ctgcagttgagccgag-tggaaatgtgaacgcaagaagcaggcttga 139158560



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1316      gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851067 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 138851008

                                                                             
Query: 1376      ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138851007 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 138850948

                               
Query: 1436      tacaggacccagag 1449
                 ||||||||||||||
Sbjct: 138850947 tacaggacccagag 138850934



 Score =  262 bits (132), Expect = 8e-67
 Identities = 132/132 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1190      cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 1249
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876764 cagctccacaaagcgcctcaagtctgtggaggatgaaatggacagtcctggtgaagagcc 138876705

                                                                             
Query: 1250      attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 1309
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138876704 attttacacgggccagggccgctccccggggagcggaagtcagtccagcgggtggcacga 138876645

                             
Query: 1310      agtggagccagg 1321
                 ||||||||||||
Sbjct: 138876644 agtggagccagg 138876633



 Score =  234 bits (118), Expect = 2e-58
 Identities = 118/118 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1075      caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 1134
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883100 caccaatagctgcaggaactggccccaatttttctctctcagatttagaaagttcttcat 138883041

                                                                           
Query: 1135      actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 1192
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138883040 actacagcatgagtccgggagcaatgaggaggtctttacccagcacatcctctaccag 138882983



 Score =  182 bits (92), Expect = 6e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1795      cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 1854
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138803670 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 138803611

                                                 
Query: 1855      caagctttgtaaatatccctcaacagacacag 1886
                 ||||||||||||||||||||||||||||||||
Sbjct: 138803610 caagctttgtaaatatccctcaacagacacag 138803579



 Score =  151 bits (76), Expect = 2e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                             
Query: 999       ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 1058
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138904571 ggacatttgggcttccaggacagttttgtcacatcaggtgtttttagtgtgactgagcta 138904512

                                 
Query: 1059      gtaagagtgtcacaga 1074
                 ||||||||||||||||
Sbjct: 138904511 gtaagagtgtcacaga 138904496



 Score =  139 bits (70), Expect = 8e-30
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                             
Query: 931       cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 990
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138958634 cagattcaagtcaatctgaaagtcccagccagccaagtgacgctgacattaaggaccagc 138958575

                           
Query: 991       cagaaaatgg 1000
                 ||||||||||
Sbjct: 138958574 cagaaaatgg 138958565



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                                    
Query: 1         ggcggccgtgcggtgcggtgcagagcggaggcgga 35
                 |||||||||||||||||||||||||||||||||||
Sbjct: 139158806 ggcggccgtgcggtgcggtgcagagcggaggcgga 139158772


>gb|GL893245.2| Sus scrofa unplaced genomic scaffold ChrUScaf1130
          Length = 191081

 Score =  805 bits (406), Expect = 0.0
 Identities = 448/465 (96%), Gaps = 1/465 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1884   cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 1943
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117819 cagtcctggtacctgggataaaagtcgcagcgtcccaccatccaccagacagaccacctg 117878

                                                                          
Query: 1944   accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 2003
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117879 accccttctcaactctgtaacatggacgcatcctcaacccagcgcggttacaacttcact 117938

                                                                          
Query: 2004   gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 2063
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117939 gtcactggaaggggagaatcaaatcaacttgtacatggaaacagcgagcattatggtcca 117998

                                                                          
Query: 2064   acagcaaaggccataaccttttgggannnnnnnnnnnnnaatactttagggactgttgta 2123
              ||||||||||||||||||||||||||             |||||||||||||||||||||
Sbjct: 117999 acagcaaaggccataaccttttgggatttttttttttttaatactttagggactgttgta 118058

                                                                          
Query: 2124   attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 2183
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118059 attttctcatatggtgctggaaatggttgggctttgtaacatttgaagtgtttccgtggt 118118

                                                                          
Query: 2184   agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 2243
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118119 agcgtgagcattaggcgatgcggctggaggaggtctacccttgctcactgacttccgctg 118178

                                                                          
Query: 2244   taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 2303
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118179 taacacacttcccttacagagcctggctgtttcacagtatttcatgaatttacccacaca 118238

                                                           
Query: 2304   ggtgtgaaccctccttgaccagtcagggggcccatggaaaactaa 2348
              |||||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 118239 ggtgtg-agcctccttgagcagtcagggggcccatggagaactaa 118282



 Score =  353 bits (178), Expect = 3e-94
 Identities = 184/186 (98%)
 Strand = Plus / Plus

                                                                         
Query: 1443  cccagagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 1502
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76168 cccacagcaagcccacacgcgacaccatcgactcttcattttccgacatcacccatcatc 76227

                                                                         
Query: 1503  cagcagcctgggccttacttctcccacccggccatccgctatcaccctcaggagacgctg 1562
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76228 cagcagcctgggccttatttctcccacccggccatccgctatcaccctcaggagacgctg 76287

                                                                         
Query: 1563  aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 1622
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76288 aaagagtttgtccaacttgtctgccctgatgctggtcagcaggctggacaggtggggttc 76347

                   
Query: 1623  ctcaat 1628
             ||||||
Sbjct: 76348 ctcaat 76353



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1316  gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 1375
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52701 gccaggaatgccatctccaaccacactgaagaagtcggagaagtctggtttcagcagccc 52760

                                                                         
Query: 1376  ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 1435
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52761 ctccccttcgcagacctcctccctgggaacggcattcacacagcatcaccgacctgtcat 52820

                           
Query: 1436  tacaggacccagag 1449
             ||||||||||||||
Sbjct: 52821 tacaggacccagag 52834



 Score =  182 bits (92), Expect = 6e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1795  cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 1854
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86179 cctactcgacacccagcacctcccccgcaaaccgattcgtcagtgttggaccacgggatc 86238

                                             
Query: 1855  caagctttgtaaatatccctcaacagacacag 1886
             ||||||||||||||||||||||||||||||||
Sbjct: 86239 caagctttgtaaatatccctcaacagacacag 86270



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1711  ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 1770
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78933 ccaggcctgtgcctctgccggtgccagacacaaagcctccgaccacgtcaacagaaggag 78992

                                     
Query: 1771  gtgcagcctcccccacctcaccaa 1794
             ||||||||||||||||||||||||
Sbjct: 78993 gtgcagcctcccccacctcaccaa 79016



 Score =  131 bits (66), Expect = 2e-27
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1629  cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 1688
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78767 cccaatgggagtagccaaggcaaagtgcacaacccattccttcccaccccaatgttgcca 78826

                   
Query: 1689  ccgccg 1694
             ||||||
Sbjct: 78827 ccgccg 78832


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  236 bits (119), Expect = 5e-59
 Identities = 389/479 (81%)
 Strand = Plus / Minus

                                                                            
Query: 399      caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
                |||||||| || || || |||||||| || || ||||| |||||||| |||||| |||||
Sbjct: 66394193 caggatgagttccacccgttcatcgaggcgctgctgcctcacgtccgcgccttctcctac 66394134

                                                                            
Query: 459      acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
                || ||||||||||||||||| || || || || ||||||||||| || || ||||| |||
Sbjct: 66394133 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcacgagaagcggatg 66394074

                                                                            
Query: 519      tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
                ||||| || || ||| |||| |||||||| ||| ||||  | || || || ||| |||||
Sbjct: 66394073 tcaaaggacgaggagcgagcggtgaaggacgagctgctgggcgagaagcctgagatcaag 66394014

                                                                            
Query: 579      cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
                ||||||||||| ||||| || ||||||||| |||| ||||||||||| ||||||| ||||
Sbjct: 66394013 cagaagtgggcatcccggctgctggccaagctgcgcaaagacatccggcccgagttccga 66393954

                                                                            
Query: 639      gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
                ||||| ||||| || ||  | || || || ||||| || || || || || |||||||| 
Sbjct: 66393953 gaggactttgtgctgaccatcacgggcaagaagcccccctgctgcgtgctctccaacccc 66393894

                                                                            
Query: 699      gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggagg 758
                |||||||| |||||||| ||  | ||||||||||| |||||||| ||||| || ||| ||
Sbjct: 66393893 gaccagaagggcaagatccggcggattgactgccttcgccaggccgacaaggtgtggcgg 66393834

                                                                            
Query: 759      ttggacctggttatggtgattttatttaaaggtattccgctcgaaagtactgatggcgag 818
                 |||||||||| ||||||||||| ||||| || || || || ||||||||||| || |||
Sbjct: 66393833 ctggacctggtcatggtgattttgtttaaggggatccccctggaaagtactgacggggag 66393774

                                                                           
Query: 819      cgccttgtaaagtccccgcagtgctctaacccagggctctgtgtccagccccatcacat 877
                || ||    ||||| || |||||||| ||||| || || || |||||||| ||||||||
Sbjct: 66393773 cggctctacaagtcgccccagtgctcgaaccccggcctgtgcgtccagccacatcacat 66393715



 Score =  184 bits (93), Expect = 1e-43
 Identities = 306/377 (81%)
 Strand = Plus / Minus

                                                                            
Query: 399      caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
                |||||||| || || || |||||||| || || ||||| |||||||| ||||||||||||
Sbjct: 75812775 caggatgagttccacccattcatcgaggcgctgctgcctcacgtccgcgccttcgcctac 75812716

                                                                            
Query: 459      acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
                || ||||||||||||||||| || || || || ||||||||||| ||||| ||||| |||
Sbjct: 75812715 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcatgagaagcggatg 75812656

                                                                            
Query: 519      tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
                |||||||| || ||| | || |||||||| ||| ||||  | || ||  | |||||||||
Sbjct: 75812655 tcaaaagatgaggagcgcgcggtgaaggacgagctgctgggcgagaaggccgaggtcaag 75812596

                                                                            
Query: 579      cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
                |||||||||||||| || || ||||||||| |||| || |||||||| ||||| | ||| 
Sbjct: 75812595 cagaagtgggcgtcgcggctgctggccaagctgcgcaaggacatccggcccgaatgccgc 75812536

                                                                            
Query: 639      gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
                ||||| ||||| ||  |  | || || || ||| ||||| | || || || |||||||| 
Sbjct: 75812535 gaggactttgtgctggccatcaccggcaagaaggcgccaggctgcgtgctctccaacccc 75812476

                                                                            
Query: 699      gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctggagg 758
                |||||||| |||||||||||  | || |||||||| |||||||| ||||| || ||| ||
Sbjct: 75812475 gaccagaagggcaagatgcgccgcatcgactgcctgcgccaggccgacaaggtgtggcgg 75812416

                                 
Query: 759      ttggacctggttatggt 775
                 |||||||||| |||||
Sbjct: 75812415 ctggacctggtcatggt 75812399


>gb|GL893931.2| Sus scrofa unplaced genomic scaffold ChrUScaf1816
          Length = 96638

 Score =  172 bits (87), Expect = 6e-40
 Identities = 273/335 (81%)
 Strand = Plus / Minus

                                                                         
Query: 399   caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
             |||||||| || || || |||||||| || || ||||| |||||||| |||||| |||||
Sbjct: 88576 caggatgagttccacccgttcatcgaggcgctgctgcctcacgtccgcgccttctcctac 88517

                                                                         
Query: 459   acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
             || ||||||||||||||||| || || || || ||||||||||| || || ||||| |||
Sbjct: 88516 acctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcacgagaagcggatg 88457

                                                                         
Query: 519   tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
             ||||| || || ||| |||| |||||||| ||| ||||  | || || || ||| |||||
Sbjct: 88456 tcaaaggacgaggagcgagcggtgaaggacgagctgctgggcgagaagcctgagatcaag 88397

                                                                         
Query: 579   cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
             ||||||||||| ||||| || ||||||||| |||| ||||||||||| ||||||| ||||
Sbjct: 88396 cagaagtgggcatcccggctgctggccaagctgcgcaaagacatccggcccgagttccga 88337

                                                                         
Query: 639   gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
             ||||| ||||| || ||  | || || || ||||| || || || || || |||||||| 
Sbjct: 88336 gaggactttgtgctgaccatcacgggcaagaagcccccctgctgcgtgctctccaacccc 88277

                                                
Query: 699   gaccagaaaggcaagatgcgaagaattgactgcct 733
             |||||||| |||||||| ||  | |||||||||||
Sbjct: 88276 gaccagaagggcaagatccggcggattgactgcct 88242


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  129 bits (65), Expect = 8e-27
 Identities = 284/357 (79%)
 Strand = Plus / Plus

                                                                             
Query: 399       caggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagccttcgcctac 458
                 |||||||||||||| || |||||||| ||||| || || || ||||| ||  ||||||| 
Sbjct: 231964137 caggatgaatttcacccgttcatcgaggcactacttccacatgtccgtgcaatcgcctat 231964196

                                                                             
Query: 459       acatggttcaacctgcaggcccgaaaacgaaaatacttcaagaaacatgaaaagcgtatg 518
                 || ||||||||||||||||| || ||||| || ||||| || || || || ||||| |||
Sbjct: 231964197 acttggttcaacctgcaggctcggaaacgcaagtactttaaaaagcacgagaagcgaatg 231964256

                                                                             
Query: 519       tcaaaagaagaagagagagccgtgaaggatgagttgctaagtgaaaaaccagaggtcaag 578
                 ||||| || ||||| ||||| || || |||||| | || || ||||| || ||  |||| 
Sbjct: 231964257 tcaaaggatgaagaaagagcagtcaaagatgagcttctcagcgaaaagcctgaaatcaaa 231964316

                                                                             
Query: 579       cagaagtgggcgtcccgacttctggccaagttgcggaaagacatccgacccgagtaccga 638
                 ||||||||||| ||| | || ||||||||  |||| ||||| ||||| |  |||||||||
Sbjct: 231964317 cagaagtgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccga 231964376

                                                                             
Query: 639       gaggattttgttcttacagttacagggaaaaagccgccatgttgtgttctttccaaccca 698
                 ||||| ||||| || || || || || || ||||  || || |||||  | ||||| || 
Sbjct: 231964377 gaggactttgtgctcaccgtgactggcaagaagcacccgtgctgtgtcttatccaatccc 231964436

                                                                          
Query: 699       gaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagacaaagtctgg 755
                 |||||||| || |||||  | ||||| |||||||| || ||||||||||||||||||
Sbjct: 231964437 gaccagaagggtaagattaggagaatcgactgcctgcgacaggcagacaaagtctgg 231964493


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 67,059,278
Number of extensions: 434
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 26
Length of query: 2348
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2326
Effective length of database: 2,808,408,574
Effective search space: 6532358343124
Effective search space used: 6532358343124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)