Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme... 476 e-134
Alignment gi|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 211 8e-55
Alignment gi|NP_001039627.1| dehydrogenase/reductase SDR family member 7 ... 91 2e-18
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 86 5e-17
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 85 9e-17
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 81 1e-15
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 81 1e-15
Alignment gi|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor... 80 2e-15
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 76 6e-14
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 74 3e-13
>ref|NP_001116504.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Bos taurus].
Length = 292
Score = 476 bits (1224), Expect = e-134
Identities = 244/289 (84%), Positives = 264/289 (91%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGK+VIVTGASKGIGREMAYHLARMGAH
Sbjct: 1 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKRVIVTGASKGIGREMAYHLARMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARSEE+LKKVVS CLELGA+SAHYVAGTME+MTFAEQFVAKAG+L+GGLDMLILNH
Sbjct: 61 VVVTARSEESLKKVVSRCLELGAASAHYVAGTMENMTFAEQFVAKAGELVGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
I + + FS+DIHL+RR++EVN LSYVVLS AALPMLKQ+NGSIVVVSS AGK+A PLV
Sbjct: 121 IHYTPLGVFSNDIHLLRRTLEVNLLSYVVLSTAALPMLKQTNGSIVVVSSIAGKIACPLV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
A YSASKFALDGFFSS+R EY TKVNVSITLCILGLIDTDTAM AVAGI N + SPKEE
Sbjct: 181 AAYSASKFALDGFFSSLRMEYEATKVNVSITLCILGLIDTDTAMKAVAGIFNAKASPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKF 972
CALEIIKG LRQ+EVYYDSSILT LLL NPGRKI+EF L+ YNME+F
Sbjct: 241 CALEIIKGGTLRQDEVYYDSSILTPLLLRNPGRKIMEFFFLKKYNMERF 289
>ref|NP_996852.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein precursor [Bos
taurus].
Length = 287
Score = 211 bits (537), Expect = 8e-55
Identities = 118/256 (46%), Positives = 161/256 (62%), Gaps = 1/256 (0%)
Frame = +1
Query: 115 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 291
MK LL LG +F AYY+ ++ F P L G +V++TG S GIG E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLHGARVLLTGVSAGIGEELAYHYARLGSHLV 57
Query: 292 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 471
+TA +E L++VV +C +LGA Y+A M E+ V A LGGLD L+LNH+
Sbjct: 58 LTAHTEALLQQVVGNCRKLGAPKVFYIAADMASPEVPERVVQFALDKLGGLDYLVLNHLG 117
Query: 472 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 651
A R M++NFLSYV L+ +ALP L S GS+VVVSS G++ +P
Sbjct: 118 AAPAGTRVRSSQSTRWLMQMNFLSYVQLTSSALPSLTDSKGSLVVVSSLLGRVPTSFSSP 177
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEECA 831
YSA+KFALD FFSS+R+E V +VNV+IT+C+LGL D +A V GI V+ +P + A
Sbjct: 178 YSAAKFALDSFFSSLRRELDVQEVNVAITMCVLGLRDRASAAEGVRGITRVRAAPGPKAA 237
Query: 832 LEIIKGAALRQEEVYY 879
L +I+G A R V+Y
Sbjct: 238 LAVIRGGATRASGVFY 253
>ref|NP_001039627.1| dehydrogenase/reductase SDR family member 7 [Bos taurus].
Length = 339
Score = 90.5 bits (223), Expect = 2e-18
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
Frame = +1
Query: 187 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 363
RPE L V VTGAS GIG E+AY L+++G +V++AR L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRMHELERVKRKCLENGNLKE 102
Query: 364 HYVAGTMEDMT--FAEQFVAKAG-KLLGGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
+ D+T + + KA + G +D+L+ N + + + +E+N
Sbjct: 103 KDILILPLDLTDRSSHEMATKAVLQEFGRIDILVNNGGVSQRALCVDTSLDVFKELIELN 162
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 711
+L V L+ LP M+++ G IV V+S G +A PL Y ASK AL GFF+++R E +
Sbjct: 163 YLGTVSLTKCVLPHMIERKQGKIVTVNSMVGIIAAPLSTGYCASKHALRGFFNTLRSELA 222
Query: 712 VTKVNVSITLCILGLIDTDTAMTAV 786
T ++I+ G + ++ A+
Sbjct: 223 -TYPGITISNICPGPVQSNIVKNAL 246
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 85.9 bits (211), Expect = 5e-17
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 6/261 (2%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 306
LLP L + + + + + G+ V++TGA GIGR+ AY A++ +V+ +
Sbjct: 26 LLPFLLVCIVESLLKLFIPKKRKSVTGEIVLITGAGHGIGRQTAYEFAKLKCKLVLWDIN 85
Query: 307 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 477
+ L++ + C LGA + +V D + E + A K+ +G + +L+ N
Sbjct: 86 KHGLEETATECKRLGAKAHTFVV----DCSNREDIYSSAKKVKAEVGDVSILVNNAGVVY 141
Query: 478 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 654
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 142 TSDLFATQDPQIEKTFEVNILAHFWTTKAFLPEMMKNNHGHIVTVASAAGHTGVPFLLAY 201
Query: 655 SASKFALDGFFSSIRKEYSVTKVNVSITLCIL-GLIDTDTAMTAVAGI-LNVQPSPKEEC 828
+SKFA GF ++ +E S K T C+ I+T + ++P EE
Sbjct: 202 CSSKFAAVGFHKALTEELSALKRTGVKTTCLCPNFINTGFIKNPSTSLGPTLEP---EEV 258
Query: 829 ALEIIKGAALRQEEVYYDSSI 891
++I G Q+ ++ SS+
Sbjct: 259 VNKLIDGILTEQKMIFVPSSL 279
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 85.1 bits (209), Expect = 9e-17
Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 8/201 (3%)
Frame = +1
Query: 187 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 366
R L K +VT ++ GIG +A LA+ GAHVVV++R ++ + + V+ G S
Sbjct: 8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTG 67
Query: 367 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDI-----HLVRRSM 525
V G ED E+ VA A KL GG+D+LI N A+++PF + + + +
Sbjct: 68 TVCHVGKAED---RERLVATAVKLHGGVDILISN----AAVSPFFGSLMDVPEEVWDKIL 120
Query: 526 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 702
+VN + +L+ A +P M K+ GSIV+VSS A P + PY+ SK AL G ++
Sbjct: 121 DVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLAL 180
Query: 703 EYSVTKVNVSITLCILGLIDT 765
E + + NV + GLI T
Sbjct: 181 E--LAESNVRVNCLAPGLIRT 199
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 81.3 bits (199), Expect = 1e-15
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 11/207 (5%)
Frame = +1
Query: 199 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 363
+R V++TGA+ G+GRE A GA +V+ R+ E L+++ EL AS A
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQ---ELAASRAPGVQT 106
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNH--ITHASMTPFSDDIHLVRRSME 528
H D+ A ++L G +D+LI N ++ S D+ +R ME
Sbjct: 107 HKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVD--KRVME 164
Query: 529 VNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 705
N+ V L+ A LP M+++ G +V +SS GK++ P + Y+ASK A FF +R E
Sbjct: 165 TNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAE 224
Query: 706 YSVTKVNVSITLCILGLIDTDTAMTAV 786
V + ++ +T+ G I T+ ++ AV
Sbjct: 225 --VEQHDIEVTVISPGYIHTNLSLNAV 249
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 81.3 bits (199), Expect = 1e-15
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 11/207 (5%)
Frame = +1
Query: 199 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 363
+R V++TGA+ G+GRE A GA +V+ R+ E L+++ EL AS A
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQ---ELAASRAPEVQT 106
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNH--ITHASMTPFSDDIHLVRRSME 528
H D+ A ++L G +D+LI N ++ S D+ +R ME
Sbjct: 107 HKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVD--KRVME 164
Query: 529 VNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 705
N+ V L+ A LP M+++ G +V +SS GK++ P + Y+ASK A FF +R E
Sbjct: 165 TNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAE 224
Query: 706 YSVTKVNVSITLCILGLIDTDTAMTAV 786
V + ++ +T+ G I T+ ++ AV
Sbjct: 225 --VEQHDIEVTVISPGYIHTNLSLNAV 249
>ref|NP_001039384.1| 3-ketodihydrosphingosine reductase precursor [Bos taurus].
Length = 331
Score = 80.5 bits (197), Expect = 2e-15
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Frame = +1
Query: 136 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 315
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 316 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 483
L K++ H + +D + E + +A + LG +DML+ N +
Sbjct: 69 LLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAGMSLS 127
Query: 484 TPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYS 657
F D ++ R M +N+L V S A + +K+ G +V VSSQAG++ YS
Sbjct: 128 GKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYS 187
Query: 658 ASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDT 771
+SKFAL G +++ E V NV +T+ DTDT
Sbjct: 188 SSKFALRGLAEALQME--VKPYNVYVTVAYPP--DTDT 221
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 75.9 bits (185), Expect = 6e-14
Identities = 57/200 (28%), Positives = 104/200 (52%), Gaps = 7/200 (3%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVT 297
LL +L I + Y S + F P + + G+ V++TGA GIGR+ AY A+ + +V+
Sbjct: 7 LLLLLLIIIYSYLESLVKVFIPRRRKSVAGEIVLITGAGHGIGRQTAYEFAKRKSRLVLW 66
Query: 298 ARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQF---VAKAGKLLGGLDMLILNHI 468
++ +++ + C +LGA++ +V D + E+ V + K +G + +++ N
Sbjct: 67 DINKHGVEETAAECRKLGATTHVFVV----DCSNREEIYSSVNQVKKEVGDVTIVVNNAG 122
Query: 469 THASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLV 645
S + ++ EVN L + ++ A LP M+++++G IV V+S G P +
Sbjct: 123 AIYPADLLSTKDEEITKTFEVNILGHFWITKALLPSMIRRNHGHIVTVASVCGHGVIPYL 182
Query: 646 APYSASKFALDGFFSSIRKE 705
PY +SKFA GF ++ E
Sbjct: 183 IPYCSSKFAAVGFHRALTSE 202
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 73.6 bits (179), Expect = 3e-13
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 4/228 (1%)
Frame = +1
Query: 205 GKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTM 384
G+ V++TGA G+GR +A A++G+ +V+ S+E+ ++ +E GA+ +
Sbjct: 40 GEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGATRVYAYTCDC 99
Query: 385 EDMTFAEQFVAKAGKLLGGLDMLILNH--ITHASMTPFSDDIHLVRRSMEVNFLSYVVLS 558
+ + K +G +LI N +T D+ L+ +S++VNF S++
Sbjct: 100 SRKEEIYRVANQVKKEVGDASILINNAGIVTGRKFMDCPDE--LIEKSLDVNFKSHIWTY 157
Query: 559 VAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE-YSVTKVNVS 732
A LP M+ + G +V +SS AG + +A Y ASKFA GF SI E ++ + +
Sbjct: 158 KAFLPAMIANNRGHLVCISSSAGLIGMNGLADYCASKFAAYGFAESIFLESFTKGQNGIK 217
Query: 733 ITLCILGLIDTDTAMTAVAGILNVQPSPKEECALEIIKGAALRQEEVY 876
T+ I T G ++ P + E A+ I A L QE +Y
Sbjct: 218 TTIVCPFFIKTGMFDGCTTGCPSLLPILEPEYAVRKIVDAIL-QENMY 264
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,825,486
Number of extensions: 1175388
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 36
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme... 481 e-136
Alignment gi|XP_542145.2| PREDICTED: similar to short-chain dehydrogenase... 188 8e-48
Alignment gi|XP_868441.1| PREDICTED: similar to short-chain dehydrogenase... 110 2e-24
Alignment gi|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase S... 91 2e-18
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 84 2e-16
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 82 6e-16
Alignment gi|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiar... 82 1e-15
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 79 9e-15
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 79 9e-15
Alignment gi|XP_852048.1| PREDICTED: similar to follicular lymphoma varia... 75 1e-13
>ref|NP_001005756.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Canis lupus
familiaris].
Length = 293
Score = 481 bits (1238), Expect = e-136
Identities = 247/290 (85%), Positives = 269/290 (92%), Gaps = 1/290 (0%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAF KKYL P+LG FLAYYYYSANEEFRPEML+GKKVIVTGASKGIG +MAYHLA+MGAH
Sbjct: 1 MAFKKKYLPPLLGFFLAYYYYSANEEFRPEMLQGKKVIVTGASKGIGEQMAYHLAKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARS+ETLKKVVSHCLELGA+SAHY+ GTMEDMTFAEQFVAKAGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLKKVVSHCLELGAASAHYIPGTMEDMTFAEQFVAKAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT+ SM FS DIHLVRRSMEVNFLSYVVLS AALPMLKQSNGSIVVVSS+AGKM++PLV
Sbjct: 121 ITNTSMNLFSGDIHLVRRSMEVNFLSYVVLSAAALPMLKQSNGSIVVVSSKAGKMSSPLV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILN-VQPSPKE 822
APYSASKFALDGFFSS+R E+SVTKVNVSITLCILGLI+TDTAM AV+GIL+ V S KE
Sbjct: 181 APYSASKFALDGFFSSVRMEHSVTKVNVSITLCILGLINTDTAMKAVSGILSTVGASSKE 240
Query: 823 ECALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKF 972
ECALEIIKG ALRQEEVYYD+S+ T+ LLGNPGRKILEFLSLR Y ++KF
Sbjct: 241 ECALEIIKGGALRQEEVYYDNSVWTAFLLGNPGRKILEFLSLRSYKLDKF 290
>ref|XP_542145.2| PREDICTED: similar to short-chain dehydrogenase/reductase 10
isoform e isoform 1 [Canis familiaris].
Length = 223
Score = 188 bits (477), Expect = 8e-48
Identities = 106/224 (47%), Positives = 139/224 (62%)
Frame = +1
Query: 115 MKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVV 294
MK LL LG YY+ N F P L+G +V++TGAS G+G E+AYH AR+G+H+V+
Sbjct: 1 MKVLLLTGLGALFFSYYWDDN--FDPASLQGARVLLTGASAGVGEELAYHYARLGSHLVL 58
Query: 295 TARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 474
TA +E L+KVV +C +LGA Y+A M + V A LGGLD L+LNH+
Sbjct: 59 TAHTEAFLQKVVGNCRKLGAPEVFYIAADMASPEVPGRVVQFALDKLGGLDYLVLNHLGA 118
Query: 475 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPY 654
S I R ++VN LSYV L+ ALP L S GS+VVVSS G++ +PY
Sbjct: 119 TPAGTRSRSIQGTRWLLQVNLLSYVQLTSLALPSLTDSRGSLVVVSSLLGRVPTSFSSPY 178
Query: 655 SASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAV 786
SA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV
Sbjct: 179 SAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAV 222
>ref|XP_868441.1| PREDICTED: similar to short-chain dehydrogenase/reductase 10
isoform a isoform 2 [Canis familiaris].
Length = 142
Score = 110 bits (275), Expect = 2e-24
Identities = 60/117 (51%), Positives = 76/117 (64%)
Frame = +1
Query: 436 GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSS 615
GGLD L+LNH+ S I R ++VN LSYV L+ ALP L S GS+VVVSS
Sbjct: 25 GGLDYLVLNHLGATPAGTRSRSIQGTRWLLQVNLLSYVQLTSLALPSLTDSRGSLVVVSS 84
Query: 616 QAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAV 786
G++ +PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV
Sbjct: 85 LLGRVPTSFSSPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAV 141
>ref|XP_537465.2| PREDICTED: similar to Dehydrogenase/reductase SDR family member 7
precursor (Retinal short-chain dehydrogenase/reductase
4) (retSDR4) [Canis familiaris].
Length = 437
Score = 90.5 bits (223), Expect = 2e-18
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Frame = +1
Query: 187 RPEMLRGKKVI-VTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 363
RPE VI VTGAS GIG E+ Y L+++G +V++AR + L++V CLE G
Sbjct: 141 RPEWELTDMVIWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKE 200
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
+ D+T A +L G +D+L+ N ++ + + ME+N
Sbjct: 201 KDIFVLPLDLTDRSSHEAATKAVLQEFGKIDILVNNGGQSQRSLCVDTNLDVFKELMELN 260
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 705
+L V L++ LP M+++ G IV V+S G ++ PL + Y ASK AL GFF+ +R E
Sbjct: 261 YLGTVSLTMCVLPHMIERKQGKIVTVNSLLGIISAPLSSGYCASKHALRGFFNCLRVE 318
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 84.3 bits (207), Expect = 2e-16
Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 8/262 (3%)
Frame = +1
Query: 130 LPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSE 309
LP+L IF + + + G+ V++TGA GIGR AY A++ + +V+ ++
Sbjct: 11 LPLLIIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 70
Query: 310 ETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHAS 480
++ + C LGA +V D + E A K+ +G + +L+ N +
Sbjct: 71 HGIEDTAAECRRLGAKVHAFVV----DCSNREDIYGSATKVKAEVGDVSILVNNAGVVYT 126
Query: 481 MTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYS 657
F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 127 SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPFLLAYC 186
Query: 658 ASKFALDGFFSSIRKEY-SVTKVNVSITLCILGLIDT---DTAMTAVAGILNVQPSPKEE 825
+SKFA GF ++ +E ++ + V T I+T A TA+ IL EE
Sbjct: 187 SSKFAAVGFHKALTEELAALERTGVKTTCLCPNFINTGFIKNASTALGPILE-----PEE 241
Query: 826 CALEIIKGAALRQEEVYYDSSI 891
+++ G Q+ ++ SSI
Sbjct: 242 VVDKLLNGILTEQKMIFIPSSI 263
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 82.4 bits (202), Expect = 6e-16
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 8/201 (3%)
Frame = +1
Query: 187 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 366
R + L K +VT ++ GIG +A LAR GAHVVV++R + + + V+ G S
Sbjct: 3 RQDPLANKVALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTG 62
Query: 367 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDIHLVR-----RSM 525
V G ED E+ VA A L GG+D+LI N A++ PF ++ V + +
Sbjct: 63 TVCHVGKAED---RERLVATAVNLHGGIDILISN----AAVNPFFGNLMDVTEEVWDKIL 115
Query: 526 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 702
++N + +++ A +P M K+ GS+V+V+S + P + PY+ SK AL G ++ +
Sbjct: 116 DINVKATALMTKAVVPEMEKRGGGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLAR 175
Query: 703 EYSVTKVNVSITLCILGLIDT 765
E + + N+ + GLI T
Sbjct: 176 E--LDQRNIRVNCLAPGLIKT 194
>ref|XP_536670.2| PREDICTED: similar to CG7601-PA [Canis familiaris].
Length = 325
Score = 81.6 bits (200), Expect = 1e-15
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 9/205 (4%)
Frame = +1
Query: 199 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA----- 363
LR V++TGA+ G+GRE A GA +V+ R+++ L+++ EL AS A
Sbjct: 50 LRNAVVVITGATSGLGRECARVFYTAGAKLVLCGRNQKALEELTK---ELTASPATKVQT 106
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
H D+ +A ++L G +D+LI N + ++ ME N
Sbjct: 107 HKPYMVTFDLADPGAIIAATAEILQCFGYVDVLINNAGISYRGAIVDTTTDVDKKVMETN 166
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 711
+ V L+ A LP M+K+ G IVV+SS GK++ P + Y+ASK A FF +R E
Sbjct: 167 YFGPVALTKALLPSMIKRRQGHIVVISSIQGKISIPFRSAYAASKHATQAFFDCLRAE-- 224
Query: 712 VTKVNVSITLCILGLIDTDTAMTAV 786
+ + + +T+ G I T+ ++ AV
Sbjct: 225 MEQYEIEVTVISPGYIHTNLSLNAV 249
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 78.6 bits (192), Expect = 9e-15
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEF--RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTA 300
LL +L I +Y F + + + G+ V++TGA GIGR AY A+ + +V+
Sbjct: 8 LLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWD 67
Query: 301 RSEETLKKVVSHCLELGASSAHYVA--GTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 474
++ +++ + C +LGA+ +V G ED+ + V + K +G + +L+ N T
Sbjct: 68 INKHGVEETAAECRKLGATVHTFVVDCGNREDIYNS---VKQVKKEVGDVTILVNNAGTV 124
Query: 475 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 651
S + ++ E+N L + ++ A LP M+K+++G IV V+S G P + P
Sbjct: 125 YPADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIP 184
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCI 747
Y +SKFA GF ++ E + T C+
Sbjct: 185 YCSSKFAAVGFHRALTLELQTLGITGIKTSCL 216
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 78.6 bits (192), Expect = 9e-15
Identities = 60/212 (28%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEF--RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTA 300
LL +L I +Y F + + + G+ V++TGA GIGR AY A+ + +V+
Sbjct: 8 LLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSRLVLWD 67
Query: 301 RSEETLKKVVSHCLELGASSAHYVA--GTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 474
++ +++ + C +LGA+ +V G ED+ + V + K +G + +L+ N T
Sbjct: 68 INKHGVEETAAECRKLGATVHTFVVDCGNREDIYNS---VKQVKKEVGDVTILVNNAGTV 124
Query: 475 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 651
S + ++ E+N L + ++ A LP M+K+++G IV V+S G P + P
Sbjct: 125 YPADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIP 184
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCI 747
Y +SKFA GF ++ E + T C+
Sbjct: 185 YCSSKFAAVGFHRALTLELQTLGITGIKTSCL 216
>ref|XP_852048.1| PREDICTED: similar to follicular lymphoma variant translocation 1
[Canis familiaris].
Length = 509
Score = 75.1 bits (183), Expect = 1e-13
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 6/203 (2%)
Frame = +1
Query: 124 YLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTAR 303
Y+L +L F+ Y + N R VTG S GIG+ +A + GA + + AR
Sbjct: 120 YVLLLLADFVVNYNHENNSSMRNS--------VTGGSSGIGKCIAIECYKQGAFITLVAR 171
Query: 304 SEETL----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 471
+E+ L K++ H + +D + E + +A + LG +DML+ N
Sbjct: 172 NEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAG 230
Query: 472 HASMTPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLV 645
+ F D ++ R M VN+L V S A + +K+ G IV VSSQAG++
Sbjct: 231 MSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGF 290
Query: 646 APYSASKFALDGFFSSIRKEYSV 714
YS+SKFA+ G +++ E +
Sbjct: 291 TAYSSSKFAIRGLAEALQMEVEI 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,643,965
Number of extensions: 1212248
Number of successful extensions: 3795
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 3755
Number of HSP's successfully gapped: 40
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 478 e-135
Alignment gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 478 e-135
Alignment gi|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 478 e-135
Alignment gi|NP_941995.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 214 1e-55
Alignment gi|NP_940935.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 192 6e-49
Alignment gi|NP_941996.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 135 5e-32
Alignment gi|NP_941994.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 134 2e-31
Alignment gi|NP_941997.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 119 3e-27
Alignment gi|NP_941993.1| hydroxysteroid 11-beta-dehydrogenase 1-like pro... 98 1e-20
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 91 2e-18
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 478 bits (1229), Expect = e-135
Identities = 241/289 (83%), Positives = 271/289 (93%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+GI+++Q +PKEE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKF 972
CALEIIKG ALRQEEVYYDSS+ T+LL+ NP RKILEFL YNM++F
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYSTSYNMDRF 289
>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 478 bits (1229), Expect = e-135
Identities = 241/289 (83%), Positives = 271/289 (93%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+GI+++Q +PKEE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKF 972
CALEIIKG ALRQEEVYYDSS+ T+LL+ NP RKILEFL YNM++F
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYSTSYNMDRF 289
>ref|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 478 bits (1229), Expect = e-135
Identities = 241/289 (83%), Positives = 271/289 (93%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAFMKKYLLPILG+F+AYYYYSANEEFRPEML+GKKVIVTGASKGIGREMAYHLA+MGAH
Sbjct: 1 MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARS+ETL+KVVSHCLELGA+SAHY+AGTMEDMTFAEQFVA+AGKL+GGLDMLILNH
Sbjct: 61 VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT+ S+ F DDIH VR+SMEVNFLSYVVL+VAALPMLKQSNGSIVVVSS AGK+A P+V
Sbjct: 121 ITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
A YSASKFALDGFFSSIRKEYSV++VNVSITLC+LGLIDT+TAM AV+GI+++Q +PKEE
Sbjct: 181 AAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKF 972
CALEIIKG ALRQEEVYYDSS+ T+LL+ NP RKILEFL YNM++F
Sbjct: 241 CALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYSTSYNMDRF 289
>ref|NP_941995.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform b [Homo
sapiens].
Length = 286
Score = 214 bits (544), Expect = 1e-55
Identities = 119/256 (46%), Positives = 161/256 (62%), Gaps = 1/256 (0%)
Frame = +1
Query: 115 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 291
MK LL LG +F AYY+ ++ F P L+G +V++TGA+ G+G E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLQGARVLLTGANAGVGEELAYHYARLGSHLV 57
Query: 292 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 471
+TA +E L+KVV +C +LGA Y+A M E V A LGGLD L+LNHI
Sbjct: 58 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPEAPESVVQFALDKLGGLDYLVLNHIG 117
Query: 472 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 651
A + R M+VNF+SYV L+ ALP L S GS+VVVSS G++ P
Sbjct: 118 GAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTP 177
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEECA 831
YSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV G+ V+ +P + A
Sbjct: 178 YSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAVRGVTRVKAAPGPKAA 237
Query: 832 LEIIKGAALRQEEVYY 879
L +I+G A R V+Y
Sbjct: 238 LAVIRGGATRAAGVFY 253
>ref|NP_940935.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform e [Homo
sapiens].
Length = 315
Score = 192 bits (487), Expect = 6e-49
Identities = 108/225 (48%), Positives = 143/225 (63%), Gaps = 1/225 (0%)
Frame = +1
Query: 115 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 291
MK LL LG +F AYY+ ++ F P L+G +V++TGA+ G+G E+AYH AR+G+H+V
Sbjct: 1 MKVLLLTGLGALFFAYYW---DDNFDPASLQGARVLLTGANAGVGEELAYHYARLGSHLV 57
Query: 292 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 471
+TA +E L+KVV +C +LGA Y+A M E V A LGGLD L+LNHI
Sbjct: 58 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPEAPESVVQFALDKLGGLDYLVLNHIG 117
Query: 472 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 651
A + R M+VNF+SYV L+ ALP L S GS+VVVSS G++ P
Sbjct: 118 GAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTP 177
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAV 786
YSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV
Sbjct: 178 YSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAV 222
>ref|NP_941996.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform c [Homo
sapiens].
Length = 199
Score = 135 bits (341), Expect = 5e-32
Identities = 76/159 (47%), Positives = 98/159 (61%)
Frame = +1
Query: 403 EQFVAKAGKLLGGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLK 582
E V A LGGLD L+LNHI A + R M+VNF+SYV L+ ALP L
Sbjct: 8 ESVVQFALDKLGGLDYLVLNHIGGAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLT 67
Query: 583 QSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLID 762
S GS+VVVSS G++ PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D
Sbjct: 68 DSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRD 127
Query: 763 TDTAMTAVAGILNVQPSPKEECALEIIKGAALRQEEVYY 879
+A AV G+ V+ +P + AL +I+G A R V+Y
Sbjct: 128 RASAAEAVRGVTRVKAAPGPKAALAVIRGGATRAAGVFY 166
>ref|NP_941994.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform a [Homo
sapiens].
Length = 205
Score = 134 bits (336), Expect = 2e-31
Identities = 72/148 (48%), Positives = 94/148 (63%)
Frame = +1
Query: 436 GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSS 615
GGLD L+LNHI A + R M+VNF+SYV L+ ALP L S GS+VVVSS
Sbjct: 25 GGLDYLVLNHIGGAPAGTRARSPQATRWLMQVNFVSYVQLTSRALPSLTDSKGSLVVVSS 84
Query: 616 QAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGI 795
G++ PYSA+KFALDGFF S+R+E V VNV+IT+C+LGL D +A AV G+
Sbjct: 85 LLGRVPTSFSTPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEAVRGV 144
Query: 796 LNVQPSPKEECALEIIKGAALRQEEVYY 879
V+ +P + AL +I+G A R V+Y
Sbjct: 145 TRVKAAPGPKAALAVIRGGATRAAGVFY 172
>ref|NP_941997.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform d [Homo
sapiens].
Length = 152
Score = 119 bits (299), Expect = 3e-27
Identities = 61/119 (51%), Positives = 81/119 (68%)
Frame = +1
Query: 523 MEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 702
M+VNF+SYV L+ ALP L S GS+VVVSS G++ PYSA+KFALDGFF S+R+
Sbjct: 1 MQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRR 60
Query: 703 EYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEECALEIIKGAALRQEEVYY 879
E V VNV+IT+C+LGL D +A AV G+ V+ +P + AL +I+G A R V+Y
Sbjct: 61 ELDVQDVNVAITMCVLGLRDRASAAEAVRGVTRVKAAPGPKAALAVIRGGATRAAGVFY 119
>ref|NP_941993.1| hydroxysteroid 11-beta-dehydrogenase 1-like protein isoform f [Homo
sapiens].
Length = 181
Score = 97.8 bits (242), Expect = 1e-20
Identities = 50/88 (56%), Positives = 63/88 (71%)
Frame = +1
Query: 523 MEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 702
M+VNF+SYV L+ ALP L S GS+VVVSS G++ PYSA+KFALDGFF S+R+
Sbjct: 1 MQVNFVSYVQLTSRALPSLTDSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRR 60
Query: 703 EYSVTKVNVSITLCILGLIDTDTAMTAV 786
E V VNV+IT+C+LGL D +A AV
Sbjct: 61 ELDVQDVNVAITMCVLGLRDRASAAEAV 88
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo
sapiens].
Length = 339
Score = 90.9 bits (224), Expect = 2e-18
Identities = 67/207 (32%), Positives = 106/207 (51%), Gaps = 5/207 (2%)
Frame = +1
Query: 187 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 363
RPE L V VTGAS GIG E+AY L+++G +V++AR L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAYQLSKLGVSLVLSARRVHELERVKRRCLENGNLKE 102
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
+ D+T A +L G +D+L+ N + + R+ +E+N
Sbjct: 103 KDILVLPLDLTDTGSHEAATKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELN 162
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYS 711
+L V L+ LP M+++ G IV V+S G ++ PL Y ASK AL GFF+ +R E +
Sbjct: 163 YLGTVSLTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELA 222
Query: 712 VTKVNVSITLCILGLIDTDTAMTAVAG 792
T + ++ G + ++ ++AG
Sbjct: 223 -TYPGIIVSNICPGPVQSNIVENSLAG 248
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,823,268
Number of extensions: 1191603
Number of successful extensions: 3865
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 3814
Number of HSP's successfully gapped: 57
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme... 459 e-129
Alignment gi|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 459 e-129
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 87 2e-17
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 87 2e-17
Alignment gi|NP_079798.2| dehydrogenase/reductase SDR family member 7 pre... 84 2e-16
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 80 3e-15
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 80 3e-15
Alignment gi|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 79 8e-15
Alignment gi|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [M... 77 2e-14
Alignment gi|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 75 6e-14
>ref|NP_001038216.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 459 bits (1182), Expect = e-129
Identities = 228/292 (78%), Positives = 257/292 (88%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MA MK YLLPIL +FLAYYYYS NEEFRPEML+GKKVIVTGASKGIGREMAYHL++MGAH
Sbjct: 1 MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VV+TARSEE L+KVVS CLELGA+SAHY+AGTMEDMTFAEQF+ KAGKL+GGLDMLILNH
Sbjct: 61 VVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT S++ F DDIH VRR MEVNFLSYVV+S AALPMLKQSNGSI V+SS AGKM P++
Sbjct: 121 ITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMI 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
APYSASKFALDGFFS+IR E +TKVNVSITLC+LGLIDT+TAM ++GI+N Q SPKEE
Sbjct: 181 APYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKFTKH 981
CALEIIKG ALR+ EVYYD S LT +LLGNPGRKI+EF SLR+YN + F +
Sbjct: 241 CALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMFVSN 292
>ref|NP_032314.2| corticosteroid 11-beta-dehydrogenase isozyme 1 [Mus musculus].
Length = 292
Score = 459 bits (1182), Expect = e-129
Identities = 228/292 (78%), Positives = 257/292 (88%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MA MK YLLPIL +FLAYYYYS NEEFRPEML+GKKVIVTGASKGIGREMAYHL++MGAH
Sbjct: 1 MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VV+TARSEE L+KVVS CLELGA+SAHY+AGTMEDMTFAEQF+ KAGKL+GGLDMLILNH
Sbjct: 61 VVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT S++ F DDIH VRR MEVNFLSYVV+S AALPMLKQSNGSI V+SS AGKM P++
Sbjct: 121 ITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMI 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
APYSASKFALDGFFS+IR E +TKVNVSITLC+LGLIDT+TAM ++GI+N Q SPKEE
Sbjct: 181 APYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKFTKH 981
CALEIIKG ALR+ EVYYD S LT +LLGNPGRKI+EF SLR+YN + F +
Sbjct: 241 CALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMFVSN 292
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 87.0 bits (214), Expect = 2e-17
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 4/200 (2%)
Frame = +1
Query: 199 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAG 378
LR V+VTGA+ G+GRE A GA +V+ R+ + L+++ H
Sbjct: 41 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 100
Query: 379 TMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYV 549
D+ A A ++L G +D+LI N T + + R+ ME+N+ V
Sbjct: 101 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 160
Query: 550 VLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVN 726
L+ A LP M+++ G IV +SS GK++ P + YSASK A FF +R E + + N
Sbjct: 161 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE--MEEAN 218
Query: 727 VSITLCILGLIDTDTAMTAV 786
+ +T+ G I T+ ++ AV
Sbjct: 219 IKVTVISPGYIHTNLSVNAV 238
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 87.0 bits (214), Expect = 2e-17
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 4/200 (2%)
Frame = +1
Query: 199 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAG 378
LR V+VTGA+ G+GRE A GA +V+ R+ + L+++ H
Sbjct: 50 LRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPFV 109
Query: 379 TMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVNFLSYV 549
D+ A A ++L G +D+LI N T + + R+ ME+N+ V
Sbjct: 110 VTFDLADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPV 169
Query: 550 VLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVN 726
L+ A LP M+++ G IV +SS GK++ P + YSASK A FF +R E + + N
Sbjct: 170 ALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAE--MEEAN 227
Query: 727 VSITLCILGLIDTDTAMTAV 786
+ +T+ G I T+ ++ AV
Sbjct: 228 IKVTVISPGYIHTNLSVNAV 247
>ref|NP_079798.2| dehydrogenase/reductase SDR family member 7 precursor [Mus
musculus].
Length = 338
Score = 84.0 bits (206), Expect = 2e-16
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 5/178 (2%)
Frame = +1
Query: 187 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 363
RPE L V VTGAS GIG E+A+ L+++G +V++AR + L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELAFQLSKLGVSLVLSARRAQELERVKRRCLENGNLKE 102
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
+ D+T A +L G +D+L+ N ++ + + + +N
Sbjct: 103 KDILVLPLDLTDTSSHEAATKAVLQEFGKIDILVNNGGRSQRSLVLETNLDVFKELINLN 162
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 705
++ V L+ LP M+++ G IV V+S AG + L + Y ASK AL GFF+++ E
Sbjct: 163 YIGTVSLTKCVLPHMIERKQGKIVTVNSIAGIASVSLSSGYCASKHALRGFFNALHSE 220
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 79.7 bits (195), Expect = 3e-15
Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 8/300 (2%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARM 276
M + ++LL ++G+ + Y S + F P + + G+ V++TGA GIGR AY A+
Sbjct: 1 MNLILEFLL-LVGVIIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQ 59
Query: 277 GAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLI 456
+ +V+ ++ +++ C +LGA H + V + + +G +++++
Sbjct: 60 KSRLVLWDINKRGVEETADKCRKLGA-VVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVV 118
Query: 457 LN--HITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGK 627
N I A + D+ + ++ EVN L + + A LP ML++++G IV V+S G
Sbjct: 119 NNAGAIYPADLLSAKDE--EITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGH 176
Query: 628 MANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQ 807
P + PY +SKFA GF ++ E T C+ + +T T
Sbjct: 177 GVIPYLIPYCSSKFAAVGFHRALTAELDTLGKTGIQTSCLCPVF-VNTGFTKNPSTRLWP 235
Query: 808 PSPKEECALEIIKGAALRQEEVYYDSSILTSLLLGN--PGRKILEFLSLRHYNMEKFTKH 981
EE A +I G ++ ++ S I SL+L P R + +++ E H
Sbjct: 236 VLEPEEVARSLINGILTNKKMIFVPSYINISLILEKFLPERALKAISRIQNIQFEAIVGH 295
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 79.7 bits (195), Expect = 3e-15
Identities = 68/261 (26%), Positives = 124/261 (47%), Gaps = 6/261 (2%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 306
LLP+L +F + + + G+ V++TGA GIGR AY A++ +V+ +
Sbjct: 10 LLPLLIVFSIESLVKLFIPKKKKSVAGEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDIN 69
Query: 307 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 477
+ +++ + C +LGA + +V D + E+ + A K+ +G + +L+ N
Sbjct: 70 KNGIEETAAKCRKLGAQAHPFVV----DCSQREEIYSAAKKVKEEVGDVSILVNNAGVVY 125
Query: 478 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 654
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 126 TADLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFLLAY 185
Query: 655 SASKFALDGFFSSIRKEYSVTKVNVSITLCIL-GLIDTDTAMTAVAGILNVQPS-PKEEC 828
+SKFA GF ++ E + T C+ I+T N+ P+ EE
Sbjct: 186 CSSKFAAVGFHRALTDELAALGRTGVRTSCLCPNFINTGFIKNPST---NLGPTLEPEEV 242
Query: 829 ALEIIKGAALRQEEVYYDSSI 891
++ G ++ ++ SSI
Sbjct: 243 VEHLMHGILTEKQMIFVPSSI 263
>ref|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform 2 [Mus musculus].
Length = 304
Score = 78.6 bits (192), Expect = 8e-15
Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 6/274 (2%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARM 276
M + ++LL ++G+ + Y S + F P + + G+ V++TGA GIGR AY A+
Sbjct: 1 MNLILEFLL-LVGVIIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQ 59
Query: 277 GAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLI 456
+ +V+ ++ +++ C +LGA H + V + + +G +++++
Sbjct: 60 KSRLVLWDINKRGVEETADKCRKLGA-VVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVV 118
Query: 457 LN--HITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGK 627
N I A + D+ + ++ EVN L + + A LP ML++++G IV V+S G
Sbjct: 119 NNAGAIYPADLLSAKDE--EITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGH 176
Query: 628 MANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQ 807
P + PY +SKFA GF ++ E T C+ + +T T
Sbjct: 177 GVIPYLIPYCSSKFAAVGFHRALTAELDTLGKTGIQTSCLCPVF-VNTGFTKNPSTRLWP 235
Query: 808 PSPKEECALEIIKGAALRQEEVYYDSSILTSLLL 909
EE A +I G ++ ++ S I SL+L
Sbjct: 236 VLEPEEVARSLINGILTNKKMIFVPSYINISLIL 269
>ref|NP_081810.1| 3-ketodihydrosphingosine reductase precursor [Mus musculus].
Length = 332
Score = 77.0 bits (188), Expect = 2e-14
Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 5/217 (2%)
Frame = +1
Query: 136 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 315
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 316 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 483
L K + H + +D E + +A + LG +DML+ T S
Sbjct: 69 LLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSG 128
Query: 484 TPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYSA 660
++ + M +N+L V S A + +K+ G IV VSSQAG++ YS+
Sbjct: 129 KFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSS 188
Query: 661 SKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDT 771
SKFA+ G +++ E V NV +T+ DTDT
Sbjct: 189 SKFAIRGLAEALQME--VKPYNVYVTVAYPP--DTDT 221
>ref|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus].
Length = 381
Score = 75.5 bits (184), Expect = 6e-14
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 10/232 (4%)
Frame = +1
Query: 64 SVCPTGLLGPGPCLMAFMKKYLLPILGI--FLAYYYYSANEEFRPEMLRGKKVIVTGASK 237
+VC GL G G CL++ L +L + FL Y S++++ P + K V+VTGA
Sbjct: 37 AVCLAGLWG-GACLLSLSLLCTLFLLSVACFLLLYMSSSDQDLLP--VDQKAVLVTGADS 93
Query: 238 GIGREMAYHLARMGAHVVVTARSEET--LKKVVSHCLELGASSAHYVAGTMEDMTFAEQF 411
G G +A HL ++G V +E +++ HC E ++ D+T EQ
Sbjct: 94 GFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSER-------LSVLQMDVTKPEQI 146
Query: 412 VAKAGKLLG-----GLDMLILNH-ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP 573
K+ GL ++ N + H + + + R+ M VNF V ++ A LP
Sbjct: 147 KDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFFGTVEVTKAFLP 206
Query: 574 MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNV 729
+L++S G +V VSS G + + + Y+A+K AL F + IR+E V V
Sbjct: 207 LLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKV 258
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,319,319
Number of extensions: 999800
Number of successful extensions: 3214
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 3169
Number of HSP's successfully gapped: 48
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 539 e-153
Alignment gi|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogen... 211 4e-55
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 89 4e-18
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 81 8e-16
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 81 1e-15
Alignment gi|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductas... 80 1e-15
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 80 2e-15
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 80 2e-15
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 74 2e-13
Alignment gi|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR famil... 70 1e-12
>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
Length = 292
Score = 539 bits (1388), Expect = e-153
Identities = 281/292 (96%), Positives = 283/292 (96%)
Frame = +1
Query: 106 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 285
MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH
Sbjct: 1 MAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAH 60
Query: 286 VVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 465
VVVTARSEETLKKVVSH LELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH
Sbjct: 61 VVVTARSEETLKKVVSHSLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNH 120
Query: 466 ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 645
IT A MT DDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV
Sbjct: 121 ITQAFMTSVYDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLV 180
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
APYSASKFALDGFFSSI KEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE
Sbjct: 181 APYSASKFALDGFFSSITKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 240
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGNPGRKILEFLSLRHYNMEKFTKH 981
CALEIIKGAALRQEEVYYDSSILTSLLL NPGRKILEFLSLRHYNME+FT +
Sbjct: 241 CALEIIKGAALRQEEVYYDSSILTSLLLENPGRKILEFLSLRHYNMERFTNN 292
>ref|XP_003123133.1| PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein-like
[Sus scrofa].
Length = 293
Score = 211 bits (538), Expect = 4e-55
Identities = 115/256 (44%), Positives = 161/256 (62%), Gaps = 1/256 (0%)
Frame = +1
Query: 115 MKKYLLPILG-IFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVV 291
MK LL LG +F AYY+ + F P LRG +V++TGAS G+G E+AYH AR+G+H+V
Sbjct: 7 MKVLLLTGLGALFFAYYW---GDNFDPASLRGARVLLTGASAGVGEELAYHYARLGSHLV 63
Query: 292 VTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHIT 471
+TA +E L+KVV +C +LGA Y+A M E+ V A LGGLD L+LNH+
Sbjct: 64 LTAHTEALLQKVVGNCRKLGAPKVFYIAADMASPDVPERVVQFALDKLGGLDYLVLNHLG 123
Query: 472 HASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAP 651
A + +R ++VNF+SYV L+ ALP L S GS+VVVSS G++ +P
Sbjct: 124 AAPAGTRARSAQAIRWLLQVNFISYVQLTSLALPSLTDSKGSLVVVSSLLGRVPTSFSSP 183
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEECA 831
YSA+KFALD FF S+R+E + VNV+IT+C+LGL D +A V G+ + +P + A
Sbjct: 184 YSAAKFALDSFFDSLRRELDMQDVNVAITMCVLGLRDHASAAEGVRGVTRAKAAPGPKAA 243
Query: 832 LEIIKGAALRQEEVYY 879
L +I+G+A R V+Y
Sbjct: 244 LAVIRGSATRASGVFY 259
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus
scrofa].
Length = 339
Score = 89.0 bits (219), Expect = 4e-18
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 5/178 (2%)
Frame = +1
Query: 187 RPEM-LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSA 363
RPE L V VTGAS GIG E+ Y L+++G +V++AR + L++V CLE G
Sbjct: 43 RPEWELTDMVVWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKG 102
Query: 364 HYVAGTMEDMTFAEQFVAKAGKLL---GGLDMLILNHITHASMTPFSDDIHLVRRSMEVN 534
+ D+ +L G +D+L+ N + + + MEVN
Sbjct: 103 KDILILPLDLANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVN 162
Query: 535 FLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE 705
+L V L+ LP M+++ G I+ V+S G +A PL Y ASK AL GFF+++R E
Sbjct: 163 YLGTVSLTKCVLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTE 220
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 81.3 bits (199), Expect = 8e-16
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 8/202 (3%)
Frame = +1
Query: 187 RPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAH 366
R + L K +VT ++ GIG +A LA+ GAHVVV++R +E + + V+ G S
Sbjct: 8 RRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTG 67
Query: 367 YV--AGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASMTPFSDDI-----HLVRRSM 525
V G ED E+ VA A L GG+D+L+ N A++ PF +I + + +
Sbjct: 68 TVCHVGKAED---RERLVAMAVNLHGGVDILVSN----AAVNPFFGNIIDATEEVWDKIL 120
Query: 526 EVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRK 702
VN + V+++ A +P M K+ GS+++VSS P + PY+ SK AL G ++
Sbjct: 121 HVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAV 180
Query: 703 EYSVTKVNVSITLCILGLIDTD 768
E + N+ + GLI T+
Sbjct: 181 E--LAPRNIRVNCLAPGLIKTN 200
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 80.9 bits (198), Expect = 1e-15
Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 8/231 (3%)
Frame = +1
Query: 67 VCPTGLLGPGPCLMAFMKKY--LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKG 240
VC GL G G CL++ + +L L FL Y Y+S +EF P + K V++TG G
Sbjct: 39 VCLAGLWG-GACLLSLSLFWGLILFSLSCFLMYAYFSG-QEFLP--VDQKAVLITGGDSG 94
Query: 241 IGREMAYHLARMGAHVVVTARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAK 420
IG ++ +L ++G V E+ S EL + + +++ D+T ++Q
Sbjct: 95 IGHALSKYLDKLGFIVFAGVLDEKG-----SGAEELRRTCSKHLSVLQLDITNSQQIRDA 149
Query: 421 AGKLLGGLDMLIL-NHITHASMTPFSDDIHLV-----RRSMEVNFLSYVVLSVAALPMLK 582
K++ + L + +A + F D L+ +R M VNF V ++ A LP+L+
Sbjct: 150 HSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAVEVTKAFLPLLR 209
Query: 583 QSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKEYSVTKVNVSI 735
+S G +V +SS AG + +A YS++K AL F + +RKE S V VS+
Sbjct: 210 KSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSV 260
>ref|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa].
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Frame = +1
Query: 136 ILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEET 315
++ L Y S +P L G V+VTG S GIG+ +A + GA + + AR+E+
Sbjct: 9 LVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDK 68
Query: 316 L----KKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITHASM 483
L K++ H + +D + E + +A + LG +DML+ N +
Sbjct: 69 LLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLV-NCAGMSLS 127
Query: 484 TPFSD-DIHLVRRSMEVNFLSYVVLSVAALPMLKQSN-GSIVVVSSQAGKMANPLVAPYS 657
F D ++ R M VN+L V S A + +K+ G IV VSSQAG++ YS
Sbjct: 128 GKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYS 187
Query: 658 ASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDT 771
+SKFA+ G +++ E V NV +T+ DTDT
Sbjct: 188 SSKFAIRGLAEALQME--VKPYNVYVTVAYPP--DTDT 221
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 79.7 bits (195), Expect = 2e-15
Identities = 58/211 (27%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 306
LLP+L IF + + + G+ V++TGA G+GR A+ A++ +V+ +
Sbjct: 10 LLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDIN 69
Query: 307 EETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGKL---LGGLDMLILNHITHA 477
+ L++ C LG+ + +V D + E + A K+ +G + +L+ N
Sbjct: 70 KHGLEETADECKRLGSKAHAFVV----DCSDREDIYSSAKKVKAEVGDVSILVNNAGVVY 125
Query: 478 SMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAPY 654
+ F+ + ++ EVN L++ + A LP M+K ++G IV V+S AG P + Y
Sbjct: 126 TSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAY 185
Query: 655 SASKFALDGFFSSIRKEYSVTKVNVSITLCI 747
+SKFA GF ++ +E + K T C+
Sbjct: 186 CSSKFAAVGFHKALTEELAALKRTGVKTTCL 216
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 79.7 bits (195), Expect = 2e-15
Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 9/294 (3%)
Frame = +1
Query: 127 LLPILGIFLAYYYYSANEEFRP---EMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVT 297
LL +L I + Y S + F P + + G+ V+VTGA GIGR++AY A+ + +V+
Sbjct: 7 LLFLLIIIIYSYLESLVKVFIPRRRKSVAGEIVLVTGAGHGIGRKIAYEFAKRKSRLVLW 66
Query: 298 ARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQF---VAKAGKLLGGLDMLILNHI 468
++ L++ + C +LGA++ +V D + E+ V + K +G + +++ N
Sbjct: 67 DINKHGLEETAAECKKLGATTHAFVV----DCSNREEIYNSVNQVKKEVGDITIVVNNAG 122
Query: 469 THASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLV 645
T S + + EVN L + ++ A LP M+ +++G +V V+S G P +
Sbjct: 123 TIYPADLLSTKDEEITITFEVNILGHFWITKALLPAMMSRNHGHVVTVASLCGHGVIPYL 182
Query: 646 APYSASKFALDGFFSSIRKEYSVTKVNVSITLCILGLIDTDTAMTAVAGILNVQPSPKEE 825
PY +SKFA GF ++ E T C+ + +T T +E
Sbjct: 183 IPYCSSKFAAVGFHRALTAELEAVGKTGIKTSCLCPVF-VNTGFTKNPSTRLWPILETDE 241
Query: 826 CALEIIKGAALRQEEVYYDSSILTSLLLGN--PGRKILEFLSLRHYNMEKFTKH 981
A +I G ++ ++ S + SL L P R + +++ E H
Sbjct: 242 VARSLIDGILTNKKMIFVPSYLNISLTLERFLPERALAAINRVQNIQFEAVVGH 295
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 73.6 bits (179), Expect = 2e-13
Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 8/274 (2%)
Frame = +1
Query: 82 LLGPGPCLMAFMKKYLLPILGIFLAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAY 261
+LG L+ F+ K +L ++ + + ++ + G+ V++TGA G+GR +A
Sbjct: 4 ILGLAQELLVFLGKSILVVVESLVFTFIPVPRKK-----VAGEIVLITGAGSGLGRLLAL 58
Query: 262 HLARMGAHVVV----TARSEETLKKVVSHCLELGASSAHYVAGTMEDMTFAEQFVAKAGK 429
AR+G+ +V+ R+EET K V E G + A+ + ++ K
Sbjct: 59 KFARLGSVLVLWDINQERNEETRKMV----QEAGVAGAYAYTCDCSQREDVYRVASQVKK 114
Query: 430 LLGGLDMLILNH--ITHASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSI 600
+G + +LI N +T D+ L+ +S++VNF +++ A LP M+ +G +
Sbjct: 115 EVGDVSILINNAGIVTGRKFLDCPDE--LMEKSLDVNFKAHLWTYKAFLPAMIANDHGHL 172
Query: 601 VVVSSQAGKMANPLVAPYSASKFALDGFFSSIRKE-YSVTKVNVSITLCILGLIDTDTAM 777
V +SS AG + +A Y ASKFA GF ++ E ++ + + T+ I T
Sbjct: 173 VCISSSAGLIGVYGLADYCASKFAAFGFAETVFFETFASKQKGIKTTIVCPFFIKTQMFE 232
Query: 778 TAVAGILNVQPSPKEECALEIIKGAALRQEEVYY 879
+ + V P + E A+E I A L+++ Y
Sbjct: 233 GCTSRLSYVLPILEPEYAVEKIVDAILKEQLYLY 266
>ref|XP_003132036.2| PREDICTED: dehydrogenase/reductase SDR family member 7C-like [Sus
scrofa].
Length = 311
Score = 70.5 bits (171), Expect = 1e-12
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 6/207 (2%)
Frame = +1
Query: 130 LPILGIF-LAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARS 306
L +LGI L + Y + + ++ K V++T A G+G+E A GA +V+ ++
Sbjct: 11 LLLLGISGLLFIYQEVSRLWSKSAVQNKVVVITDAISGLGKECARVFHTGGARLVLCGKN 70
Query: 307 EETLKKVVSHCLELGASSAHY----VAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITH 474
E L+ + + + S + V + D++ + + G +D+LI N
Sbjct: 71 WERLQTLYDALISVADPSKTFTPKLVLLDLSDISCVQDVAKEVLDCYGCVDILISNASMK 130
Query: 475 ASMTPFSDDIHLVRRSMEVNFLSYVVLSVAALP-MLKQSNGSIVVVSSQAGKMANPLVAP 651
+ L ++ M+ N+ + L+ A LP M+ + G IV+V++ G++ P
Sbjct: 131 VKGPAHKISLELDKKIMDANYFGPITLTKALLPNMISRRTGQIVLVNNIQGRLGIPFRTA 190
Query: 652 YSASKFALDGFFSSIRKEYSVTKVNVS 732
Y+ASK A GFF +R E V VS
Sbjct: 191 YAASKHAALGFFDCLRAEVEEFDVVVS 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,983,345
Number of extensions: 757475
Number of successful extensions: 2548
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 2513
Number of HSP's successfully gapped: 31
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002119
(1033 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894531.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 498 e-138
>gb|GL894531.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3187
Length = 27161
Score = 498 bits (251), Expect = e-138
Identities = 267/271 (98%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 763 acagacacggccatgacagcagtggctgggatactcaacgtacaaccatctccaaaggaa 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1251 acagacacggccatgacagcagtggctgggatactcaacgtacaaccatctccaaaggaa 1192
Query: 823 gaatgcgccctggaaattatcaaaggggcagctttgcgccaagaggaagtgtattatgac 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1191 gaatgcgccctggaaattatcaaaggggcagctttgcgccaagaggaagtgtattatgac 1132
Query: 883 agctcaatcttgacttctctcctgctgggaaatccagggaggaagatcctggaatttctg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1131 agctcaatcttgacttctctcctgctgggaaatccagggaggaagatcctggaatttctg 1072
Query: 943 tccttacgacattataatatggaaaagtttacaaaacactaggcccttgtttagggctgg 1002
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 1071 tccttacgacattataatatggaaaggtttacaaacaactaggcccttgtttagggctgg 1012
Query: 1003 gcatgataagggggcttgcaggtattctgcc 1033
||||||||| |||||||||||||||||||||
Sbjct: 1011 gcatgataa-ggggcttgcaggtattctgcc 982
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 436 gggggcctggacatgctcattctcaaccacatcacccacgcctccatgactccgtttagt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23005 gggggcctggacatgctcattctcaaccacatcacccacgcctccatgactccgtttagt 22946
Query: 496 gacgacatccacctcgtgcgcagaagcatggaggtcaacttcctcagctacgtggtcctc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22945 gacgacatccacctcgtgcgcagaagcatggaggtcaacttcctcagctacgtggtcctc 22886
Query: 556 agcgtggccgccttgcccatgctgaagcagagcaacgggagcatcgtggtggtctcgtcc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22885 agcgtggccgccttgcccatgctgaagcagagcaacgggagcatcgtggtggtctcgtcc 22826
Query: 616 caggcggg 623
||||||||
Sbjct: 22825 caggcggg 22818
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 9 acaattcagaggctgctgcctgcctaggaggttgtagaaagctctgtaggttctctctgt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25139 acaattcagaggctgctgcctgcctaggaggttgtagaaagctctgtaggttctctctgt 25080
Query: 69 gtgtcctacagggctcctcgggccaggtccctgtctgatggcttttatgaaaaaatatct 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25079 gtgtcctacagggctcctcgggccaggtccctgtctgatggcttttatgaaaaaatatct 25020
Query: 129 cctccctattctggggatcttcttggcctactactactattccgcaaatgaggaattcag 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25019 cctccctattctggggatcttcttggcctactactactattccgcaaatgaggaattcag 24960
Query: 189 accag 193
|||||
Sbjct: 24959 accag 24955
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 622 gggaaaatggcgaatccacttgttgctccctattctgcaagcaagtttgctctggacggg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 gggaaaatggcgaatccacttgttgctccctattctgcaagcaagtttgctctggacggg 3116
Query: 682 ttcttctcctctatcaggaaagaatattcagtgaccaaggtcaacgtgtcaatcacgctc 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 ttcttctcctctatcaggaaagaatattcagtgaccaaggtcaacgtgtcaatcacgctc 3056
Query: 742 tgtatcctcggtctcatagacacag 766
|||||||||||||||||||||||||
Sbjct: 3055 tgtatcctcggtctcatagacacag 3031
Score = 274 bits (138), Expect = 9e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 190 ccagagatgcttcgaggaaagaaagtgattgtcacaggggccagcaaggggatcggaaga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24199 ccagagatgcttcgaggaaagaaagtgattgtcacaggggccagcaaggggatcggaaga 24140
Query: 250 gagatggcctatcatctggcgaggatgggagcccatgtggtggtgacagcgaggtcagaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24139 gagatggcctatcatctggcgaggatgggagcccatgtggtggtgacagcgaggtcagaa 24080
Query: 310 gaaactctcaagaaggtg 327
||||||||||||||||||
Sbjct: 24079 gaaactctcaagaaggtg 24062
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 323 aggtggtgtcccactgcctggagcttggcgcgtcttcagcacactacgttgctggcacca 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23221 aggtggtgtcccactgcctggagcttggcgcgtcttcagcacactacgttgctggcacca 23162
Query: 383 tggaggacatgaccttcgcagagcaatttgttgccaaagctggaaagctcctggg 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23161 tggaggacatgaccttcgcagagcaatttgttgccaaagctggaaagctcctggg 23107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,557,225
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 6
Length of query: 1033
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1012
Effective length of database: 2,808,413,156
Effective search space: 2842114113872
Effective search space used: 2842114113872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)