Animal-Genome cDNA 20110601C-002127

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos tauru...   769   0.0  
Alignment   gi|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taur...   707   0.0  
Alignment   gi|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos tau...   514   e-146
Alignment   gi|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bo...   255   8e-68
Alignment   gi|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos tauru...   246   5e-65
Alignment   gi|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos tauru...   245   6e-65
Alignment   gi|NP_001033606.1| ATP-dependent RNA helicase DDX25 [Bos taurus].    240   3e-63
Alignment   gi|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus].     233   4e-61
Alignment   gi|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus].    228   8e-60
Alignment   gi|NP_001095588.1| probable ATP-dependent RNA helicase DDX20 [B...   222   7e-58

>ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus].
          Length = 406

 Score =  770 bits (1987), Expect = 0.0
 Identities = 394/406 (97%), Positives = 394/406 (97%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406


>ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus].
          Length = 407

 Score =  707 bits (1824), Expect = 0.0
 Identities = 352/403 (87%), Positives = 376/403 (93%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 364

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 365  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407


>ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus].
          Length = 411

 Score =  514 bits (1323), Expect = e-146
 Identities = 261/406 (64%), Positives = 317/406 (78%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            M+ S  +R R    + M       S   ++  +FD M L E LLRGIYAYGFEKPSAIQQ
Sbjct: 7    MATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAI   IKG DVIAQ+QSGTGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK +
Sbjct: 67   RAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            +ALGDYM   CHACIGGTNV  +++KL     H++ GTPGRVFDM+ RR L  + IKM V
Sbjct: 127  LALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 185

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEML++GFK+QIYD+++ L   TQVVL+SAT+P ++LE+T KFM DPIRILVK++E
Sbjct: 186  LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGI+QF++ VEREEWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS
Sbjct: 246  LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS 305

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            +MHGDM QKER+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH  
Sbjct: 306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAIN V  +D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus].
          Length = 483

 Score =  255 bits (651), Expect = 8e-68
 Identities = 138/385 (35%), Positives = 228/385 (59%), Gaps = 1/385 (0%)
 Frame = +3

Query: 111  DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 290
            + F+D  L   LL GI+  G+EKPS IQ+ +I   + G D++A+A++GTGK+  + I +L
Sbjct: 96   NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 155

Query: 291  QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQME 467
            ++++L     QA+V+ PTRELA Q+ ++ + +  +MG A   A  GGTN+R ++ +L  +
Sbjct: 156  ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-D 214

Query: 468  APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 647
              H+++ TPGR+ D++ +      +++M VLDEAD++LS+ F   + DI   L  N Q++
Sbjct: 215  TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 274

Query: 648  LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
            L SAT P  V +     ++ P  I +  EELTL+G+ Q+Y  V  E  K+  L  L+  L
Sbjct: 275  LYSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL 332

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
             I Q++IF N+ ++V+ L +K+    ++   +H  M Q+ R+ +  +FR+G  R L+ TD
Sbjct: 333  QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIETF 1187
            L  RGID+Q V++VIN+D P   E Y+H            +AIN++T +D+  L+ IE  
Sbjct: 393  LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452

Query: 1188 YNTSIEEMPLNVADLI*GAALLSQP 1262
              T I+ +P N+   +  A   S+P
Sbjct: 453  LGTEIKPIPSNIDKSLYVAEYHSEP 477


>ref|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos taurus].
          Length = 484

 Score =  246 bits (627), Expect = 5e-65
 Identities = 146/388 (37%), Positives = 227/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 96   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAFV 154

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L Q+E   +  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 155  LAMLSQVEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 214

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
               + HI++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 215  ---SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 271

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 272  NCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQALCN 331

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            +Y  +TI QA+IF ++R+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 332  IYGAITIAQAMIFCHSRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKV 391

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 392  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 451

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 452  HSMNILNRIQEHFNKKIERLDTDDLDEI 479


>ref|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos taurus].
          Length = 478

 Score =  245 bits (626), Expect = 6e-65
 Identities = 146/388 (37%), Positives = 227/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPMMLAEPPQNLIAQSQSGTGKTAAFV 148

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L ++E   +  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 149  LAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
               + HI++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 209  ---SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 265

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 266  NCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQALCN 325

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            +Y  +TI QA+IF +TR+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 326  IYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKV 385

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 386  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 445

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 446  HSMNILNRIQEHFNKKIERLDTDDLDEI 473


>ref|NP_001033606.1| ATP-dependent RNA helicase DDX25 [Bos taurus].
          Length = 483

 Score =  240 bits (612), Expect = 3e-63
 Identities = 145/380 (38%), Positives = 220/380 (57%), Gaps = 12/380 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFA 278
            V +F+++ L E LL+GIYA GF +PS IQ+ A LP +  +   ++IAQ+QSGTGKTA F 
Sbjct: 96   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMA-LPMMLAHPPQNLIAQSQSGTGKTAAFV 154

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQK 455
            +++L ++       Q L LAPT ELA Q  +VV  +G + +       I G  +      
Sbjct: 155  LAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDV 214

Query: 456  LQMEAPHIIVGTPGRVFDM-LNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLN 629
             +     I++GTPG V D    R+ +    I++FVLDEAD M+ ++GF+DQ   I + L 
Sbjct: 215  TKQ----IVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALP 270

Query: 630  SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 809
            S  Q++L SAT    V +  ++ + DP  I ++KEELTL  IRQ+Y+     + K   LC
Sbjct: 271  SECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALC 330

Query: 810  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 989
            ++Y  +TI QA+IF  TRR   WLT +M      VS + G++   +R  I++ FR G  +
Sbjct: 331  NIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEK 390

Query: 990  VLITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMVTE 1151
            VLITT++ ARGIDV+QV++V+N+DLP N+      E Y+H            +A NM+  
Sbjct: 391  VLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEV 450

Query: 1152 EDKRTLRDIETFYNTSIEEM 1211
            +    L  I+  +N+SI+++
Sbjct: 451  DKLPLLMKIQDHFNSSIKQL 470


>ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus].
          Length = 428

 Score =  233 bits (593), Expect = 4e-61
 Identities = 131/370 (35%), Positives = 208/370 (56%), Gaps = 4/370 (1%)
 Frame = +3

Query: 117  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 296
            F D  L   LLR I   GFE PS +Q   I   I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 47   FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 297  IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 473
            +E        LV+  TRELA QI K       YM         GG +++ + + L+   P
Sbjct: 107  LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 474  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 650
            HI+VGTPGR+  +   + L+ K+IK F+LDE D+ML +   +  + +IF+      QV++
Sbjct: 167  HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 651  LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
             SAT+  ++  V +KFM+DP+ I V  E +LTL G++Q+Y+ ++  E K   L DL + L
Sbjct: 227  FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
               Q VIF+ + ++   L + +  ++F   A+H  M Q+ER    ++F+    R+L+ T+
Sbjct: 286  EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 345

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE-DKRTLRDIET 1184
            L  RG+D+++V++  NYD+P + + Y+H            +AI  V++E D + L D++ 
Sbjct: 346  LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 405

Query: 1185 FYNTSIEEMP 1214
             +  +I E+P
Sbjct: 406  RFEVNISELP 415


>ref|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus].
          Length = 427

 Score =  228 bits (582), Expect = 8e-60
 Identities = 127/370 (34%), Positives = 208/370 (56%), Gaps = 4/370 (1%)
 Frame = +3

Query: 117  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 296
            F D  L   LLR I   GFE PS +Q   I   I G D++ QA+SG GKTA F ++ LQQ
Sbjct: 46   FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQ 105

Query: 297  IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 473
            IE        LV+  TRELA QI K       YM         GG +++ + + L+   P
Sbjct: 106  IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCP 165

Query: 474  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 650
            H++VGTPGR+  ++  R L+ + +K FVLDE D+ML +   +  + +IF+      Q ++
Sbjct: 166  HVVVGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225

Query: 651  LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
             SAT+  ++  V +KFM+DP+ + V  E +LTL G++Q+Y+ ++  E K   L DL + L
Sbjct: 226  FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 284

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
               Q VIF+ + ++   L + +  ++F   A+H  M Q+ER    ++F+    R+L+ T+
Sbjct: 285  EFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATN 344

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE-DKRTLRDIET 1184
            L  RG+D+++V++V NYD+P + + Y+H            +A+  V++E D + L D++ 
Sbjct: 345  LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQD 404

Query: 1185 FYNTSIEEMP 1214
             +  ++ E+P
Sbjct: 405  RFEVNVAELP 414


>ref|NP_001095588.1| probable ATP-dependent RNA helicase DDX20 [Bos taurus].
          Length = 825

 Score =  222 bits (565), Expect = 7e-58
 Identities = 126/334 (37%), Positives = 199/334 (59%), Gaps = 9/334 (2%)
 Frame = +3

Query: 117  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 296
            F+ + LS  +L G+ A GFE+PS +Q +AI     G D+I QA+SGTGKT  F+   L  
Sbjct: 64   FESLLLSRPVLEGLRAVGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 123

Query: 297  IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 473
            + L+  +TQ L+LAPTRE+A QI  V+ A+G  M G  CH  IGGT +  +  K +++  
Sbjct: 124  LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD--KTRLKKC 181

Query: 474  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG-FKDQIYDIFQKLNSNTQVVL 650
            HI VG+PGR+  ++   YL+P  I++F+LDEAD++L  G F++QI  I+  L ++ Q++ 
Sbjct: 182  HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLA 241

Query: 651  LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE-------EWKLDTLC 809
            +SAT P  +     K+MR+P  + +   + +L G++Q+Y  V          E K   L 
Sbjct: 242  VSATYPEFLANALTKYMREPTFVRLNSSDPSLIGLKQYYKIVNSYPLAHKIFEEKTQHLQ 301

Query: 810  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 989
            +L+  +   QA++F N   +   L + + ++ F    + G+MDQ  R   M + +    R
Sbjct: 302  ELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAEYISGNMDQNRRLDAMAKLKQFHCR 361

Query: 990  VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            VLI+TDL +RGID ++V+LV+N D+P + E Y+H
Sbjct: 362  VLISTDLTSRGIDAEKVNLVVNLDVPLDCETYMH 395


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,654,676
Number of extensions: 1540067
Number of successful extensions: 4665
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 4516
Number of HSP's successfully gapped: 55
Length of query: 478
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,174,046
Effective search space: 5272745112
Effective search space used: 5272745112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851852.1| PREDICTED: similar to eukaryotic translation in...   766   0.0  
Alignment   gi|XP_536623.2| PREDICTED: similar to eukaryotic translation in...   738   0.0  
Alignment   gi|XP_545242.2| PREDICTED: similar to eukaryotic translation in...   707   0.0  
Alignment   gi|XP_860687.1| PREDICTED: similar to eukaryotic translation in...   649   0.0  
Alignment   gi|XP_860499.1| PREDICTED: similar to eukaryotic translation in...   649   0.0  
Alignment   gi|XP_860391.1| PREDICTED: similar to eukaryotic translation in...   649   0.0  
Alignment   gi|XP_860915.1| PREDICTED: similar to eukaryotic translation in...   634   0.0  
Alignment   gi|XP_864504.1| PREDICTED: similar to eukaryotic translation in...   634   0.0  
Alignment   gi|XP_860851.1| PREDICTED: similar to eukaryotic translation in...   577   e-164
Alignment   gi|XP_860790.1| PREDICTED: similar to eukaryotic translation in...   552   e-157

>ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
            isoform 1 isoform 2 [Canis familiaris].
          Length = 406

 Score =  766 bits (1979), Expect = 0.0
 Identities = 392/406 (96%), Positives = 393/406 (96%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSR+ DNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRTEDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406


>ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
            isoform 1 isoform 1 [Canis familiaris].
          Length = 390

 Score =  738 bits (1904), Expect = 0.0
 Identities = 378/390 (96%), Positives = 378/390 (96%)
 Frame = +3

Query: 66   MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA 245
            MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA
Sbjct: 1    MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA 60

Query: 246  QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 425
            QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG
Sbjct: 61   QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 120

Query: 426  GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 605
            GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI
Sbjct: 121  GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 180

Query: 606  YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 785
            YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE
Sbjct: 181  YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 240

Query: 786  EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 965
            EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR
Sbjct: 241  EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMR 300

Query: 966  EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMV 1145
            EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH            VAINMV
Sbjct: 301  EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMV 360

Query: 1146 TEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
            TEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  TEEDKRTLRDIETFYNTSIEEMPLNVADLI 390


>ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 2 [Canis familiaris].
          Length = 407

 Score =  707 bits (1824), Expect = 0.0
 Identities = 352/403 (87%), Positives = 376/403 (93%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 364

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 365  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407


>ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 12 [Canis familiaris].
          Length = 362

 Score =  649 bits (1675), Expect = 0.0
 Identities = 321/355 (90%), Positives = 342/355 (96%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359


>ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 7 [Canis familiaris].
          Length = 362

 Score =  649 bits (1675), Expect = 0.0
 Identities = 321/355 (90%), Positives = 342/355 (96%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359


>ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 4 [Canis familiaris].
          Length = 360

 Score =  649 bits (1675), Expect = 0.0
 Identities = 321/355 (90%), Positives = 342/355 (96%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359


>ref|XP_860915.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 19 [Canis familiaris].
          Length = 377

 Score =  634 bits (1635), Expect = 0.0
 Identities = 323/403 (80%), Positives = 346/403 (85%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA  
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSA-- 302

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
                                        LARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 303  ----------------------------LARGIDVQQVSLVINYDLPTNRENYIHRIGRG 334

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 335  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 377


>ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
            isoform 1 isoform 4 [Canis familiaris].
          Length = 351

 Score =  634 bits (1635), Expect = 0.0
 Identities = 326/339 (96%), Positives = 327/339 (96%)
 Frame = +3

Query: 219  KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 398
            +GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM
Sbjct: 13   RGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 72

Query: 399  GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 578
            GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM
Sbjct: 73   GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 132

Query: 579  LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 758
            LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR
Sbjct: 133  LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 192

Query: 759  QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 938
            QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD
Sbjct: 193  QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 252

Query: 939  QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXX 1118
            QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH         
Sbjct: 253  QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 312

Query: 1119 XXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
               VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 313  RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 351


>ref|XP_860851.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 17 [Canis familiaris].
          Length = 332

 Score =  577 bits (1486), Expect = e-164
 Identities = 292/355 (82%), Positives = 312/355 (87%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA  
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSA-- 302

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
                                        LARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 303  ----------------------------LARGIDVQQVSLVINYDLPTNRENYIH 329


>ref|XP_860790.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
            isoform 15 [Canis familiaris].
          Length = 334

 Score =  552 bits (1423), Expect = e-157
 Identities = 275/317 (86%), Positives = 297/317 (93%)
 Frame = +3

Query: 285  ILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 464
            ++ ++E++ K TQALVLAPTRELAQQIQKV++ALGDYMGA+CHACIGGTNVR E+QKLQ 
Sbjct: 18   LVLKLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 77

Query: 465  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 644
            EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDEADEMLSRGFKDQIY+IFQKLN++ QV
Sbjct: 78   EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 137

Query: 645  VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 824
            VLLSATMP+DVLEVTKKFMRDPIRILVKKEELTLEGI+QFYINVEREEWKLDTLCDLYET
Sbjct: 138  VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYET 197

Query: 825  LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 1004
            LTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+HGDMDQKERDVIMREFRSGSSRVLITT
Sbjct: 198  LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 257

Query: 1005 DLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIET 1184
            DLLARGIDVQQVSLVINYDLPTNRENYIH            VAIN VTEEDKR LRDIET
Sbjct: 258  DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 317

Query: 1185 FYNTSIEEMPLNVADLI 1235
            FYNT++EEMP+NVADLI
Sbjct: 318  FYNTTVEEMPMNVADLI 334


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,012,817
Number of extensions: 1564839
Number of successful extensions: 4834
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 4516
Number of HSP's successfully gapped: 142
Length of query: 478
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 371
Effective length of database: 15,307,552
Effective search space: 5679101792
Effective search space used: 5679101792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Ho...   769   0.0  
Alignment   gi|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapien...   707   0.0  
Alignment   gi|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 ...   654   0.0  
Alignment   gi|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapie...   514   e-145
Alignment   gi|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo ...   256   5e-68
Alignment   gi|NP_009173.1| ATP-dependent RNA helicase DDX19B isoform 1 [Ho...   246   4e-65
Alignment   gi|NP_060802.1| ATP-dependent RNA helicase DDX19A [Homo sapiens].    244   2e-64
Alignment   gi|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens].     238   8e-63
Alignment   gi|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens].      233   4e-61
Alignment   gi|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens].      233   4e-61

>ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens].
          Length = 406

 Score =  770 bits (1987), Expect = 0.0
 Identities = 394/406 (97%), Positives = 394/406 (97%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406


>ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens].
          Length = 407

 Score =  707 bits (1824), Expect = 0.0
 Identities = 352/403 (87%), Positives = 376/403 (93%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 364

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 365  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407


>ref|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 [Homo sapiens].
          Length = 347

 Score =  654 bits (1688), Expect(2) = 0.0
 Identities = 332/334 (99%), Positives = 333/334 (99%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 1019
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLL +
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLGK 334



 Score = 25.8 bits (55), Expect(2) = 0.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 1076 GKLHPQDRSWRTFWP 1120
            GKL+PQ+RS  T WP
Sbjct: 333  GKLYPQNRSRWTVWP 347


>ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens].
          Length = 411

 Score =  514 bits (1323), Expect = e-145
 Identities = 261/406 (64%), Positives = 317/406 (78%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            M+ S  +R R    + M       S   ++  +FD M L E LLRGIYAYGFEKPSAIQQ
Sbjct: 7    MATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAI   IKG DVIAQ+QSGTGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK +
Sbjct: 67   RAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            +ALGDYM   CHACIGGTNV  +++KL     H++ GTPGRVFDM+ RR L  + IKM V
Sbjct: 127  LALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 185

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEML++GFK+QIYD+++ L   TQVVL+SAT+P ++LE+T KFM DPIRILVK++E
Sbjct: 186  LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGI+QF++ VEREEWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS
Sbjct: 246  LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS 305

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            +MHGDM QKER+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH  
Sbjct: 306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAIN V  +D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens].
          Length = 483

 Score =  256 bits (653), Expect = 5e-68
 Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 1/391 (0%)
 Frame = +3

Query: 111  DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 290
            + F+D  L   LL GI+  G+EKPS IQ+ +I   + G D++A+A++GTGK+  + I +L
Sbjct: 96   NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 155

Query: 291  QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQME 467
            ++++L     QA+V+ PTRELA Q+ ++ + +  +MG A   A  GGTN+R ++ +L  +
Sbjct: 156  ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-D 214

Query: 468  APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 647
              H+++ TPGR+ D++ +      +++M VLDEAD++LS+ F   + DI   L  N Q++
Sbjct: 215  TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 274

Query: 648  LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
            L SAT P  V +     ++ P  I +  EELTL+G+ Q+Y  V  E  K+  L  L+  L
Sbjct: 275  LYSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL 332

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
             I Q++IF N+ ++V+ L +K+    ++   +H  M Q+ R+ +  +FR+G  R L+ TD
Sbjct: 333  QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIETF 1187
            L  RGID+Q V++VIN+D P   E Y+H            +AIN++T +D+  L+ IE  
Sbjct: 393  LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452

Query: 1188 YNTSIEEMPLNVADLI*GAALLSQPQPGIRP 1280
              T I+ +P N+   +  A   S+P    +P
Sbjct: 453  LGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP 483


>ref|NP_009173.1| ATP-dependent RNA helicase DDX19B isoform 1 [Homo sapiens].
          Length = 479

 Score =  246 bits (628), Expect = 4e-65
 Identities = 148/388 (38%), Positives = 226/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 91   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAFV 149

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L Q+E   K  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 150  LAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
              +   I++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 210  SEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 267  NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            LY  +TI QA+IF +TR+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 327  LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 387  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 447  HSMNILNRIQEHFNKKIERLDTDDLDEI 474


>ref|NP_060802.1| ATP-dependent RNA helicase DDX19A [Homo sapiens].
          Length = 478

 Score =  244 bits (622), Expect = 2e-64
 Identities = 146/388 (37%), Positives = 226/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPMMLAEPPQNLIAQSQSGTGKTAAFV 148

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L ++E   +  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 149  LAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 208

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
              +   I++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 209  SEQ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 265

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 266  NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 325

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            LY  +TI QA+IF +TR+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 326  LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 385

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 386  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 445

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 446  HSMNILNRIQEHFNKKIERLDTDDLDEI 473


>ref|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens].
          Length = 483

 Score =  238 bits (608), Expect = 8e-63
 Identities = 147/387 (37%), Positives = 224/387 (57%), Gaps = 12/387 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFA 278
            V +F+++ L E LL+GIYA GF +PS IQ+ A LP +  +   ++IAQ+QSGTGKTA F 
Sbjct: 96   VKTFEELRLKEELLKGIYAMGFNRPSKIQEMA-LPMMLAHPPQNLIAQSQSGTGKTAAFV 154

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQK 455
            +++L ++       Q L LAPT ELA Q  +VV  +G + +       I G  +      
Sbjct: 155  LAMLSRVNALELFPQCLCLAPTYELALQTGRVVEQMGKFCVDVQVMYAIRGNRIPRGTDI 214

Query: 456  LQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLN 629
             +     II+GTPG V D   + + +    I++FVLDEAD M+ ++GF D    I + L 
Sbjct: 215  TKQ----IIIGTPGTVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALP 270

Query: 630  SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 809
            S  Q++L SAT    V    ++ + DP  I ++KEELTL  IRQ+Y+  E  + K   LC
Sbjct: 271  SECQMLLFSATFEDSVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALC 330

Query: 810  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 989
            ++Y ++TI QA+IF  TRR   WLT +M      VS + G++  ++R  I++ FR G  +
Sbjct: 331  NIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK 390

Query: 990  VLITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMVTE 1151
            VLITT++ ARGIDV+QV++V+N+DLP  +      E Y+H            +A NM+  
Sbjct: 391  VLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV 450

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADL 1232
            ++  +L  I+  +N+SI++  LN  D+
Sbjct: 451  DELPSLMKIQDHFNSSIKQ--LNAEDM 475


>ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens].
          Length = 428

 Score =  233 bits (593), Expect = 4e-61
 Identities = 131/370 (35%), Positives = 208/370 (56%), Gaps = 4/370 (1%)
 Frame = +3

Query: 117  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 296
            F D  L   LLR I   GFE PS +Q   I   I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 47   FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 297  IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 473
            +E        LV+  TRELA QI K       YM         GG +++ + + L+   P
Sbjct: 107  LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 474  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 650
            HI+VGTPGR+  +   + L+ K+IK F+LDE D+ML +   +  + +IF+      QV++
Sbjct: 167  HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 651  LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
             SAT+  ++  V +KFM+DP+ I V  E +LTL G++Q+Y+ ++  E K   L DL + L
Sbjct: 227  FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
               Q VIF+ + ++   L + +  ++F   A+H  M Q+ER    ++F+    R+L+ T+
Sbjct: 286  EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 345

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE-DKRTLRDIET 1184
            L  RG+D+++V++  NYD+P + + Y+H            +AI  V++E D + L D++ 
Sbjct: 346  LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 405

Query: 1185 FYNTSIEEMP 1214
             +  +I E+P
Sbjct: 406  RFEVNISELP 415


>ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens].
          Length = 428

 Score =  233 bits (593), Expect = 4e-61
 Identities = 131/370 (35%), Positives = 208/370 (56%), Gaps = 4/370 (1%)
 Frame = +3

Query: 117  FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 296
            F D  L   LLR I   GFE PS +Q   I   I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 47   FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 106

Query: 297  IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 473
            +E        LV+  TRELA QI K       YM         GG +++ + + L+   P
Sbjct: 107  LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP 166

Query: 474  HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 650
            HI+VGTPGR+  +   + L+ K+IK F+LDE D+ML +   +  + +IF+      QV++
Sbjct: 167  HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 226

Query: 651  LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
             SAT+  ++  V +KFM+DP+ I V  E +LTL G++Q+Y+ ++  E K   L DL + L
Sbjct: 227  FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
               Q VIF+ + ++   L + +  ++F   A+H  M Q+ER    ++F+    R+L+ T+
Sbjct: 286  EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 345

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE-DKRTLRDIET 1184
            L  RG+D+++V++  NYD+P + + Y+H            +AI  V++E D + L D++ 
Sbjct: 346  LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 405

Query: 1185 FYNTSIEEMP 1214
             +  +I E+P
Sbjct: 406  RFEVNISELP 415


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,009,010
Number of extensions: 1549897
Number of successful extensions: 4497
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 4322
Number of HSP's successfully gapped: 58
Length of query: 478
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,802,980
Effective search space: 5506708560
Effective search space used: 5506708560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu...   769   0.0  
Alignment   gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M...   707   0.0  
Alignment   gi|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 ...   706   0.0  
Alignment   gi|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c...   649   0.0  
Alignment   gi|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b...   521   e-148
Alignment   gi|NP_619610.1| eukaryotic initiation factor 4A-III [Mus muscul...   513   e-145
Alignment   gi|NP_001136206.1| predicted gene, EG668137 [Mus musculus].          509   e-144
Alignment   gi|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-...   504   e-143
Alignment   gi|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-...   504   e-143
Alignment   gi|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mu...   256   3e-68

>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
          Length = 406

 Score =  770 bits (1987), Expect = 0.0
 Identities = 394/406 (97%), Positives = 394/406 (97%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406


>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
          Length = 407

 Score =  707 bits (1824), Expect = 0.0
 Identities = 352/403 (87%), Positives = 376/403 (93%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 364

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 365  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407


>ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus].
          Length = 364

 Score =  706 bits (1821), Expect = 0.0
 Identities = 358/358 (100%), Positives = 358/358 (100%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358


>ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus].
          Length = 362

 Score =  649 bits (1675), Expect = 0.0
 Identities = 321/355 (90%), Positives = 342/355 (96%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359


>ref|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b [Mus musculus].
          Length = 312

 Score =  521 bits (1343), Expect = e-148
 Identities = 264/317 (83%), Positives = 286/317 (90%)
 Frame = +3

Query: 285  ILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQM 464
            +L+ ++L  K   +LVL        +IQKV++ALGDYMGA+CHACIGGTNVR E+QKLQ 
Sbjct: 4    VLRSLQLFSKELLSLVL--------KIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 55

Query: 465  EAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 644
            EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDEADEMLSRGFKDQIY+IFQKLN++ QV
Sbjct: 56   EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV 115

Query: 645  VLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 824
            VLLSATMP+DVLEVTKKFMRDPIRILVKKEELTLEGI+QFYINVEREEWKLDTLCDLYET
Sbjct: 116  VLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYET 175

Query: 825  LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 1004
            LTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+HGDMDQKERDVIMREFRSGSSRVLITT
Sbjct: 176  LTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 235

Query: 1005 DLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIET 1184
            DLLARGIDVQQVSLVINYDLPTNRENYIH            VAIN VTEEDKR LRDIET
Sbjct: 236  DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 295

Query: 1185 FYNTSIEEMPLNVADLI 1235
            FYNT++EEMP+NVADLI
Sbjct: 296  FYNTTVEEMPMNVADLI 312


>ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus].
          Length = 411

 Score =  513 bits (1322), Expect = e-145
 Identities = 260/406 (64%), Positives = 317/406 (78%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            M+ S  +R R    + M       S   ++  +FD M L E LLRGIYAYGFEKPSAIQQ
Sbjct: 7    MATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAI   IKG DVIAQ+QSGTGKTATF++S+LQ +++ ++ TQAL+LAPTRELA QIQK +
Sbjct: 67   RAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            +ALGDYM   CHACIGGTNV  +++KL     H++ GTPGRVFDM+ RR L  + IKM V
Sbjct: 127  LALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 185

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEML++GFK+QIYD+++ L   TQVVL+SAT+P ++LE+T KFM DPIRILVK++E
Sbjct: 186  LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGI+QF++ VEREEWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS
Sbjct: 246  LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS 305

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            +MHGDM QKER+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH  
Sbjct: 306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAIN V  +D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus].
          Length = 411

 Score =  509 bits (1311), Expect = e-144
 Identities = 259/406 (63%), Positives = 316/406 (77%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            M+ S  +R R    DGM       S   +   +FD M L E LLRGIYAYGFEKPSAIQQ
Sbjct: 7    MATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAI   +KG DVIAQ+QSGTGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK +
Sbjct: 67   RAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            +ALGDYM   CHAC+GGTNV  +++KL     H++ GTPGRVFDM+ RR L+ + IKM V
Sbjct: 127  LALGDYMNVQCHACVGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLTTRAIKMLV 185

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEML+RGFK+QIYD+++ L   TQVVL+SAT+P ++LE+T KFM  PIRILVK++E
Sbjct: 186  LDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDE 245

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGI+QF++ VEREEWK DTLCDLY+TLTITQAVIF  T+RKVDWLTEKM   +FTVS
Sbjct: 246  LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVS 305

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            +MHGDM QKER+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH  
Sbjct: 306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAIN V  +D R LRDIE +Y+T I+EMP+N+ADLI
Sbjct: 366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI 411


>ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
          Length = 411

 Score =  504 bits (1299), Expect = e-143
 Identities = 255/387 (65%), Positives = 310/387 (80%), Gaps = 3/387 (0%)
 Frame = +3

Query: 84   IESNWNEIVD---SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG 254
            +E   +E VD   +FD M L E LLRGIYAYGFEKPSAIQQRAI   +KG DVIAQ+QSG
Sbjct: 26   VEFETSEEVDRTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSG 85

Query: 255  TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 434
            TGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK ++ LGDYM   CHACIGGTN
Sbjct: 86   TGKTATFSISMLQCLDIQVRETQALILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTN 145

Query: 435  VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 614
            V  +++KL     H++ GTPGRVFDM+ RR L  + IKM VLDEADEML++GFK+QIYD+
Sbjct: 146  VDEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204

Query: 615  FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 794
            ++ L   TQVVL+SAT+P ++LE+T KFM DPI ILVK++ELTLEGI+QF++ VEREEWK
Sbjct: 205  YRYLPPATQVVLISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWK 264

Query: 795  LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 974
             DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+MHG+M QKER+ IM+EFR
Sbjct: 265  FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFR 324

Query: 975  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE 1154
            SG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH            VAIN V  +
Sbjct: 325  SGASRVLISTDIWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 384

Query: 1155 DKRTLRDIETFYNTSIEEMPLNVADLI 1235
            D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 385  DIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
          Length = 411

 Score =  504 bits (1299), Expect = e-143
 Identities = 255/387 (65%), Positives = 310/387 (80%), Gaps = 3/387 (0%)
 Frame = +3

Query: 84   IESNWNEIVD---SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSG 254
            +E   +E VD   +FD M L E LLRGIYAYGFEKPSAIQQRAI   +KG DVIAQ+QSG
Sbjct: 26   VEFETSEEVDRTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSG 85

Query: 255  TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 434
            TGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK ++ LGDYM   CHACIGGTN
Sbjct: 86   TGKTATFSISMLQCLDIQVRETQALILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTN 145

Query: 435  VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 614
            V  +++KL     H++ GTPGRVFDM+ RR L  + IKM VLDEADEML++GFK+QIYD+
Sbjct: 146  VDEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDV 204

Query: 615  FQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 794
            ++ L   TQVVL+SAT+P ++LE+T KFM DPI ILVK++ELTLEGI+QF++ VEREEWK
Sbjct: 205  YRYLPPATQVVLISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWK 264

Query: 795  LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 974
             DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+MHG+M QKER+ IM+EFR
Sbjct: 265  FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFR 324

Query: 975  SGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEE 1154
            SG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH            VAIN V  +
Sbjct: 325  SGASRVLISTDIWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 384

Query: 1155 DKRTLRDIETFYNTSIEEMPLNVADLI 1235
            D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 385  DIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus].
          Length = 483

 Score =  256 bits (654), Expect = 3e-68
 Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 1/391 (0%)
 Frame = +3

Query: 111  DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 290
            + F+D  L   LL GI+  G+EKPS IQ+ +I   + G D++A+A++GTGK+  + I +L
Sbjct: 96   NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 155

Query: 291  QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQME 467
            ++++L     QA+V+ PTRELA Q+ ++ + +  +MG A   A  GGTN+R ++ +L  +
Sbjct: 156  ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-D 214

Query: 468  APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 647
              H+++ TPGR+ D++ +      +++M VLDEAD++LS+ F   + DI   L  N Q++
Sbjct: 215  TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 274

Query: 648  LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
            L SAT P  V +     ++ P  I +  EELTL+G+ Q+Y  V  E  K+  L  L+  L
Sbjct: 275  LYSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL 332

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
             I Q++IF N+ ++V+ L +K+    ++   +H  M Q+ R+ +  +FR+G  R L+ TD
Sbjct: 333  QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIETF 1187
            L  RGID+Q V++VIN+D P   E Y+H            +AIN++T +D+  L+ IE  
Sbjct: 393  LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452

Query: 1188 YNTSIEEMPLNVADLI*GAALLSQPQPGIRP 1280
              T I+ +P N+   +  A   S+P    +P
Sbjct: 453  LGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP 483


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,560,802
Number of extensions: 1303649
Number of successful extensions: 3968
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3776
Number of HSP's successfully gapped: 63
Length of query: 478
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 373
Effective length of database: 12,463,779
Effective search space: 4648989567
Effective search space used: 4648989567
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrof...   769   0.0  
Alignment   gi|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I...   711   0.0  
Alignment   gi|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scro...   707   0.0  
Alignment   gi|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-I...   543   e-154
Alignment   gi|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scr...   514   e-146
Alignment   gi|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helica...   256   3e-68
Alignment   gi|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helica...   256   3e-68
Alignment   gi|XP_003126920.1| PREDICTED: ATP-dependent RNA helicase DDX19B...   248   5e-66
Alignment   gi|XP_003126917.1| PREDICTED: ATP-dependent RNA helicase DDX19A...   246   2e-65
Alignment   gi|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-...   239   4e-63

>ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa].
          Length = 406

 Score =  770 bits (1987), Expect = 0.0
 Identities = 394/406 (97%), Positives = 394/406 (97%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ
Sbjct: 1    MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 60

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV
Sbjct: 61   RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 120

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV
Sbjct: 121  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 180

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE
Sbjct: 181  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 240

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS
Sbjct: 241  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 300

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH  
Sbjct: 301  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 360

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI
Sbjct: 361  GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 406


>ref|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Sus scrofa].
          Length = 413

 Score =  711 bits (1834), Expect = 0.0
 Identities = 365/382 (95%), Positives = 365/382 (95%)
 Frame = +3

Query: 90   SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 269
            SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA
Sbjct: 32   SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 91

Query: 270  TFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 449
            TFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV
Sbjct: 92   TFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 151

Query: 450  QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN 629
            QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN
Sbjct: 152  QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN 211

Query: 630  SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 809
            SNTQVVLLSATMPSDVLEVTKKFMRDPIRIL     LTLEGIRQFYINVEREEWKLDTLC
Sbjct: 212  SNTQVVLLSATMPSDVLEVTKKFMRDPIRILXXXXXLTLEGIRQFYINVEREEWKLDTLC 271

Query: 810  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 989
            DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR
Sbjct: 272  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 331

Query: 990  VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTL 1169
            VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH            VAINMVTEEDKRTL
Sbjct: 332  VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTL 391

Query: 1170 RDIETFYNTSIEEMPLNVADLI 1235
            RDIETFYNTSIEEMPLNVADLI
Sbjct: 392  RDIETFYNTSIEEMPLNVADLI 413


>ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa].
          Length = 407

 Score =  707 bits (1824), Expect = 0.0
 Identities = 352/403 (87%), Positives = 376/403 (93%)
 Frame = +3

Query: 27   SQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAI 206
            S D      GP+GM+P+GVIESNWNEIVD+FDDMNL ESLLRGIYAYGFEKPSAIQQRAI
Sbjct: 5    SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI 64

Query: 207  LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 386
            +PCIKGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++AL
Sbjct: 65   IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 124

Query: 387  GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 566
            GDYMGA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDE
Sbjct: 125  GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 184

Query: 567  ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL 746
            ADEMLSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTL
Sbjct: 185  ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTL 244

Query: 747  EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 926
            EGI+QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+H
Sbjct: 245  EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304

Query: 927  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXXXXX 1106
            GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH     
Sbjct: 305  GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 364

Query: 1107 XXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                   VAIN VTEEDKR LRDIETFYNT++EEMP+NVADLI
Sbjct: 365  GRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI 407


>ref|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Sus scrofa].
          Length = 323

 Score =  543 bits (1398), Expect = e-154
 Identities = 270/291 (92%), Positives = 286/291 (98%)
 Frame = +3

Query: 219  KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 398
            KGYDVIAQAQSGTGKTATFAISILQQ+E++ K TQALVLAPTRELAQQIQKV++ALGDYM
Sbjct: 30   KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM 89

Query: 399  GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 578
            GA+CHACIGGTNVR E+QKLQ EAPHI+VGTPGRVFDMLNRRYLSPK+IKMFVLDEADEM
Sbjct: 90   GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM 149

Query: 579  LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 758
            LSRGFKDQIY+IFQKLN++ QVVLLSATMP+DVLEVTKKFMRDPIRILVKKEELTLEGI+
Sbjct: 150  LSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIK 209

Query: 759  QFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMD 938
            QFYINVEREEWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+HGDMD
Sbjct: 210  QFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMD 269

Query: 939  QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 1091
            QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH
Sbjct: 270  QKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 320


>ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa].
          Length = 411

 Score =  514 bits (1323), Expect = e-146
 Identities = 261/406 (64%), Positives = 317/406 (78%)
 Frame = +3

Query: 18   MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQ 197
            M+ S  +R R    + M       S   ++  +FD M L E LLRGIYAYGFEKPSAIQQ
Sbjct: 7    MATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQ 66

Query: 198  RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVV 377
            RAI   IKG DVIAQ+QSGTGKTATF+IS+LQ +++ ++ TQAL+LAPTRELA QIQK +
Sbjct: 67   RAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL 126

Query: 378  MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFV 557
            +ALGDYM   CHACIGGTNV  +++KL     H++ GTPGRVFDM+ RR L  + IKM V
Sbjct: 127  LALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 185

Query: 558  LDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 737
            LDEADEML++GFK+QIYD+++ L   TQVVL+SAT+P ++LE+T KFM DPIRILVK++E
Sbjct: 186  LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDE 245

Query: 738  LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS 917
            LTLEGI+QF++ VEREEWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS
Sbjct: 246  LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS 305

Query: 918  AMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHXX 1097
            +MHGDM QKER+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP NRE YIH  
Sbjct: 306  SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI 365

Query: 1098 XXXXXXXXXXVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                      VAIN V  +D R LRDIE +Y+T I+EMP+NVADLI
Sbjct: 366  GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411


>ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Sus
            scrofa].
          Length = 483

 Score =  256 bits (653), Expect = 3e-68
 Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 1/391 (0%)
 Frame = +3

Query: 111  DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 290
            + F+D  L   LL GI+  G+EKPS IQ+ +I   + G D++A+A++GTGK+  + I +L
Sbjct: 96   NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 155

Query: 291  QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQME 467
            ++++L     QA+V+ PTRELA Q+ ++ + +  +MG A   A  GGTN+R ++ +L  +
Sbjct: 156  ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-D 214

Query: 468  APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 647
              H+++ TPGR+ D++ +      +++M VLDEAD++LS+ F   + DI   L  N Q++
Sbjct: 215  TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 274

Query: 648  LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
            L SAT P  V +     ++ P  I +  EELTL+G+ Q+Y  V  E  K+  L  L+  L
Sbjct: 275  LYSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL 332

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
             I Q++IF N+ ++V+ L +K+    ++   +H  M Q+ R+ +  +FR+G  R L+ TD
Sbjct: 333  QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIETF 1187
            L  RGID+Q V++VIN+D P   E Y+H            +AIN++T +D+  L+ IE  
Sbjct: 393  LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452

Query: 1188 YNTSIEEMPLNVADLI*GAALLSQPQPGIRP 1280
              T I+ +P N+   +  A   S+P    +P
Sbjct: 453  LGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP 483


>ref|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Sus
            scrofa].
          Length = 483

 Score =  256 bits (653), Expect = 3e-68
 Identities = 139/391 (35%), Positives = 230/391 (58%), Gaps = 1/391 (0%)
 Frame = +3

Query: 111  DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL 290
            + F+D  L   LL GI+  G+EKPS IQ+ +I   + G D++A+A++GTGK+  + I +L
Sbjct: 96   NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 155

Query: 291  QQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQME 467
            ++++L     QA+V+ PTRELA Q+ ++ + +  +MG A   A  GGTN+R ++ +L  +
Sbjct: 156  ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD-D 214

Query: 468  APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 647
              H+++ TPGR+ D++ +      +++M VLDEAD++LS+ F   + DI   L  N Q++
Sbjct: 215  TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 274

Query: 648  LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 827
            L SAT P  V +     ++ P  I +  EELTL+G+ Q+Y  V  E  K+  L  L+  L
Sbjct: 275  LYSATFPLSVQKFMNSHLQKPYEINLM-EELTLKGVTQYYAYVT-ERQKVHCLNTLFSRL 332

Query: 828  TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 1007
             I Q++IF N+ ++V+ L +K+    ++   +H  M Q+ R+ +  +FR+G  R L+ TD
Sbjct: 333  QINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392

Query: 1008 LLARGIDVQQVSLVINYDLPTNRENYIHXXXXXXXXXXXXVAINMVTEEDKRTLRDIETF 1187
            L  RGID+Q V++VIN+D P   E Y+H            +AIN++T +D+  L+ IE  
Sbjct: 393  LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452

Query: 1188 YNTSIEEMPLNVADLI*GAALLSQPQPGIRP 1280
              T I+ +P N+   +  A   S+P    +P
Sbjct: 453  LGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP 483


>ref|XP_003126920.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 1 [Sus scrofa].
          Length = 479

 Score =  248 bits (634), Expect = 5e-66
 Identities = 148/388 (38%), Positives = 227/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 91   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPLMLAEPPQNLIAQSQSGTGKTAAFV 149

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L Q+E   +  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 150  LAMLSQVEPANRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKI 209

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
               + HI++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 210  ---SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 266

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 267  NCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQALCN 326

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            LY  +TI QA+IF +TR+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 327  LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKV 386

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 387  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 447  HSMNILNRIQEHFNKKIERLDTDDLDEI 474


>ref|XP_003126917.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 1 [Sus
            scrofa].
          Length = 478

 Score =  246 bits (629), Expect = 2e-65
 Identities = 147/388 (37%), Positives = 227/388 (58%), Gaps = 12/388 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKG---YDVIAQAQSGTGKTATFA 278
            V SF+++ L   LL+G+YA GF +PS IQ+ A LP +      ++IAQ+QSGTGKTA F 
Sbjct: 90   VKSFEELRLKPQLLQGVYAMGFNRPSKIQENA-LPMMLAEPPQNLIAQSQSGTGKTAAFV 148

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 458
            +++L ++E   +  Q L L+PT ELA Q  KV+  +G +      A     N     QK+
Sbjct: 149  LAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKI 208

Query: 459  QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNS 632
               + HI++GTPG V D  ++ +++ PK IK+FVLDEAD M++ +G +DQ   I + L  
Sbjct: 209  ---SEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR 265

Query: 633  NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 812
            N Q++L SAT    V +  +K + DP  I +K+EE TL+ I+Q+Y+     + K   LC+
Sbjct: 266  NCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQALCN 325

Query: 813  LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 992
            LY  +TI QA+IF +TR+   WL  ++      V+ + G+M  ++R  ++  FR G  +V
Sbjct: 326  LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKV 385

Query: 993  LITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMV-TE 1151
            L+TT++ ARGIDV+QVS+VIN+DLP ++      E Y+H            +A+NMV ++
Sbjct: 386  LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 445

Query: 1152 EDKRTLRDIETFYNTSIEEMPLNVADLI 1235
                 L  I+  +N  IE +  +  D I
Sbjct: 446  HSMNILNRIQEHFNKKIERLDTDDLDEI 473


>ref|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-like [Sus scrofa].
          Length = 541

 Score =  239 bits (609), Expect = 4e-63
 Identities = 145/380 (38%), Positives = 219/380 (57%), Gaps = 12/380 (3%)
 Frame = +3

Query: 108  VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFA 278
            V +F+++ L E LL+GIYA GF +PS IQ+ A LP +  +   ++IAQ+QSGTGKTA F 
Sbjct: 154  VKTFEELRLKEELLKGIYAMGFNRPSKIQEMA-LPMMLAHPPQNLIAQSQSGTGKTAAFV 212

Query: 279  ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQK 455
            +++L ++       Q L LAPT ELA Q  +VV  +G + +       I G  +      
Sbjct: 213  LAMLSRVNALELFPQCLCLAPTYELALQTGRVVERMGRFCVDVQVMYAIRGNRIPRGTDI 272

Query: 456  LQMEAPHIIVGTPGRVFDM-LNRRYLSPKYIKMFVLDEADEML-SRGFKDQIYDIFQKLN 629
             +     II+GTPG V D    R+ +    I++FVLDEAD M+ ++GF DQ   I + L 
Sbjct: 273  TKQ----IIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALP 328

Query: 630  SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 809
            S  Q++L SAT    V +  ++ + DP  I ++KEELTL  IRQ+Y+     + K   LC
Sbjct: 329  SGCQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALC 388

Query: 810  DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 989
            ++Y  +TI QA+IF  TRR   WLT +M      VS + G++   +R  I++ FR G  +
Sbjct: 389  NIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLRGELTVDQRAAIIQRFRDGKEK 448

Query: 990  VLITTDLLARGIDVQQVSLVINYDLPTNR------ENYIHXXXXXXXXXXXXVAINMVTE 1151
            VLITT++ ARGIDV+QV++V+N+DLP N+      E Y+H            +A NM+  
Sbjct: 449  VLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEV 508

Query: 1152 EDKRTLRDIETFYNTSIEEM 1211
            +    L  I+  +N++I+++
Sbjct: 509  DKLPLLMKIQDHFNSNIKQL 528


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,415,666
Number of extensions: 1017098
Number of successful extensions: 2941
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 2794
Number of HSP's successfully gapped: 57
Length of query: 478
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 375
Effective length of database: 8,779,541
Effective search space: 3292327875
Effective search space used: 3292327875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002127
         (1436 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         563   e-158
Sscrofa_Chr12                                                         444   e-122
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   408   e-111
Sscrofa_Chr13                                                          76   6e-11

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  563 bits (284), Expect = e-158
 Identities = 887/1082 (81%), Gaps = 22/1082 (2%)
 Strand = Plus / Minus

                                                                             
Query: 171       tttgagaagccctctgccatccagcagcgagccattcttccttgtatcaagggttatgat 230
                 ||||||||| ||||||||||||||||||  | ||||||| ||||||||||||||||| ||
Sbjct: 109746602 tttgagaagtcctctgccatccagcagcctgtcattctttcttgtatcaagggttattat 109746543

                                                                             
Query: 231       gtgatcgctcaagcccaatctgggactgggaaaact---gccactttcgccatatcaatt 287
                 ||||||   |||||| || || ||||||  ||||     |||||||| || || ||||||
Sbjct: 109746542 gtgatcatgcaagccaaacctaggactgaaaaaaaaaaggccacttttgctatgtcaatt 109746483

                                                                             
Query: 288       ctgcagcagattgaattggatctaaaggccacccaggccttggtcctggcacccactaga 347
                 |||||  || ||||| | |||||||||| ||||| ||||||| ||   |||| |||||| 
Sbjct: 109746482 ctgcaataggttgaactagatctaaaggtcaccctggccttgttct--gcactcactagg 109746425

                                                                             
Query: 348       gagttggctcagcagatacagaaggtggttatggcattaggagattacatgggtgcttcc 407
                 |  |||||||||||||||  ||||||  | |||||||||| |  |||||||||||| |||
Sbjct: 109746424 g--ttggctcagcagatatggaaggtaataatggcattagaattttacatgggtgcctcc 109746367

                                                                             
Query: 408       tgccat----gcctgcattggtgg-taccaatgtgcgtgctgaggtgcagaagctacaga 462
                  ||||     |||||||||||  | || |||||||| |||||||||| ||||||| || |
Sbjct: 109746366 agccagccacgcctgcattgggagatatcaatgtgcatgctgaggtgtagaagctgcaca 109746307

                                                                             
Query: 463       tggaagctccccacatcatcgtgggtaccccaggccgtgtgtttgatatgcttaacagga 522
                 ||||| ||||||| | ||||||||||||| |||| | |||||||  |||||||| | |||
Sbjct: 109746306 tggaatctccccataccatcgtgggtaccacaggtcatgtgtttagtatgcttagctgga 109746247

                                                                             
Query: 523       gatacttgtctcccaaatacatcaagatgtttgtattggatgaagctgatgagatgttaa 582
                 ||||  ||||||||||||||||||||||||||||| ||||| |||||||||| ||  |||
Sbjct: 109746246 gatatctgtctcccaaatacatcaagatgtttgtactggataaagctgatgaaatactaa 109746187

                                                                             
Query: 583       gccgagggttcaaggaccagatctatgacatattccaaaagctcaatagcaacacccagg 642
                 ||| | ||||||||||||||||||||||||||||||||||||| ||||  ||||||||| 
Sbjct: 109746186 gccaaaggttcaaggaccagatctatgacatattccaaaagcttaatattaacacccagc 109746127

                                                                             
Query: 643       tggttttgctgtcagctacaatgccttctgatgtgctggaagtgaccaagaagttcatgc 702
                 | ||| |||| |||||| |||||||||   |||     || ||||||| |||| ||| | 
Sbjct: 109746126 ttgttctgctatcagctgcaatgccttacaatgcatctgaggtgaccaggaaggtcaaga 109746067

                                                                             
Query: 703       gggacccaattcgaatccttgtcaagaaggaagagctgaccctggagggtattcgccaat 762
                 |||||||||||  ||   |||||||||||||| || ||||||| ||||||||  ||||||
Sbjct: 109746066 gggacccaattttaacttttgtcaagaaggaaaagttgaccctagagggtatctgccaat 109746007

                                                                             
Query: 763       tctacatcaatgtggaacgcgaggagtggaagctggacaccctgtgtgacttgtacgaaa 822
                 || |||| || |||||||  ||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 109746006 tccacattaaggtggaacaagaggactggaagctggacacactgtgtgacttgtatgaaa 109745947

                                                                             
Query: 823       ccctgaccatcacccaggcagtcatcttcatcaacacccgaaggaaggtcgactggctca 882
                 ||| | | ||||||||||||||||||||||| |||||| |||||||||| ||  ||||||
Sbjct: 109745946 ccccggctatcacccaggcagtcatcttcattaacacctgaaggaaggttga--ggctca 109745889

                                                                             
Query: 883       cggagaagatgcacgcccgagacttcaccgtctctgctatgcacggggacatggaccaga 942
                 | |  |||||||| ||| |||||||||| |||||| | |||||| | || |||||  | |
Sbjct: 109745888 ctggaaagatgcatgcctgagacttcactgtctctaccatgcacagagatatggattaaa 109745829

                                                                             
Query: 943       aaga-----acgcgacgtcatcatgagggagttccgctcgggctccagcagagtgttgat 997
                 || |     | | || |  || ||||||||||||| ||| ||||| |||||||| |||||
Sbjct: 109745828 aaaaaaaagatgagatgcaattatgagggagttccactctggctctagcagagtattgat 109745769

                                                                             
Query: 998       taccacggatctgctggccagaggcatcgacgtgcagcaggtttccttagtcatcaacta 1057
                 |||||| || || |||||| |||||||  |||||||  |||||||||||||||| ||  |
Sbjct: 109745768 taccactgacctactggcctgaggcattaacgtgcaagaggtttccttagtcataaatca 109745709

                                                                             
Query: 1058      tgaccttcccaccaacagggaaaactacatccacaggatcggtcgtggcggacgttttgg 1117
                 ||||| ||||||||||||| |||||||||||||||| || |||| ||  ||| | |||||
Sbjct: 109745708 tgaccatcccaccaacaggaaaaactacatccacagaattggtcctgctggatgctttgg 109745649

                                                                             
Query: 1118      ccgtaagggtgtggctattaacatggtgacagaagaagacaagaggactctccgggacat 1177
                 |  |||| ||||| |||||| ||| |||||   ||||||||| |||||  |  | |||||
Sbjct: 109745648 ctataagagtgtgactattatcatagtgac---agaagacaaaaggaccttttgagacat 109745592

                                                                             
Query: 1178      tgagaccttctacaacacctccatcgaggagatgcccctcaatgttgctgacctcatctg 1237
                   |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 109745591 caagaccttctacaacacctccattgaggagatgcccctcaatgttgctgccctcatctg 109745532

                   
Query: 1238      ag 1239
                 ||
Sbjct: 109745531 ag 109745530



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                           
Query: 1379      aataaatgtcactttttgagacaaaagaaggaacaatgaccattttagacaccctttt 1436
                 |||||||||||||| ||| | ||||||||||||| |||| ||||||||||||| ||||
Sbjct: 109745414 aataaatgtcacttattgggtcaaaagaaggaaccatgaacattttagacaccgtttt 109745357


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  444 bits (224), Expect = e-122
 Identities = 248/256 (96%)
 Strand = Plus / Minus

                                                                            
Query: 1091     caggatcggtcgtggcggacgttttggccgtaagggtgtggctattaacatggtgacaga 1150
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55300669 caggatcggtcgtggcggacgttttggccgtaagggtgtggctattaacatggtgacaga 55300610

                                                                            
Query: 1151     agaagacaagaggactctccgggacattgagaccttctacaacacctccatcgaggagat 1210
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55300609 agaagacaagaggactctccgggacattgagaccttctacaacacctccatcgaggagat 55300550

                                                                            
Query: 1211     gcccctcaatgttgctgacctcatctgaggcgctgctctgctctcccagccccagccagg 1270
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55300549 gcccctcaatgttgctgacctcatctgaggcgctgctctgctctcccagccccagccagg 55300490

                                                                            
Query: 1271     gatccgacctgtccttgaggggggctgaggacaagcacagggggggaaggaagggaacca 1330
                |||||||||||||||||||||||||||||||  ||||   ||||||| |||||||| |||
Sbjct: 55300489 gatccgacctgtccttgaggggggctgaggaacagcagcaggggggagggaagggagcca 55300430

                                
Query: 1331     aggaatggacatcttg 1346
                ||| ||||||||||||
Sbjct: 55300429 agggatggacatcttg 55300414



 Score =  333 bits (168), Expect = 2e-88
 Identities = 171/172 (99%)
 Strand = Plus / Minus

                                                                            
Query: 360      cagatacagaaggtggttatggcattaggagattacatgggtgcttcctgccatgcctgc 419
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 55302460 cagatacagaaggtggttatggcattaggagactacatgggtgcttcctgccatgcctgc 55302401

                                                                            
Query: 420      attggtggtaccaatgtgcgtgctgaggtgcagaagctacagatggaagctccccacatc 479
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55302400 attggtggtaccaatgtgcgtgctgaggtgcagaagctacagatggaagctccccacatc 55302341

                                                                    
Query: 480      atcgtgggtaccccaggccgtgtgtttgatatgcttaacaggagatacttgt 531
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55302340 atcgtgggtaccccaggccgtgtgtttgatatgcttaacaggagatacttgt 55302289



 Score =  291 bits (147), Expect = 5e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                            
Query: 640      aggtggttttgctgtcagctacaatgccttctgatgtgctggaagtgaccaagaagttca 699
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301705 aggtggttttgctgtcagctacaatgccttctgatgtgctggaagtgaccaagaagttca 55301646

                                                                            
Query: 700      tgcgggacccaattcgaatccttgtcaagaaggaagagctgaccctggagggtattcgcc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301645 tgcgggacccaattcgaatccttgtcaagaaggaagagctgaccctggagggtattcgcc 55301586

                                           
Query: 760      aattctacatcaatgtggaacgcgagg 786
                |||||||||||||||||||||||||||
Sbjct: 55301585 aattctacatcaatgtggaacgcgagg 55301559



 Score =  280 bits (141), Expect = 2e-72
 Identities = 141/141 (100%)
 Strand = Plus / Minus

                                                                            
Query: 222      ggttatgatgtgatcgctcaagcccaatctgggactgggaaaactgccactttcgccata 281
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55303481 ggttatgatgtgatcgctcaagcccaatctgggactgggaaaactgccactttcgccata 55303422

                                                                            
Query: 282      tcaattctgcagcagattgaattggatctaaaggccacccaggccttggtcctggcaccc 341
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55303421 tcaattctgcagcagattgaattggatctaaaggccacccaggccttggtcctggcaccc 55303362

                                     
Query: 342      actagagagttggctcagcag 362
                |||||||||||||||||||||
Sbjct: 55303361 actagagagttggctcagcag 55303341



 Score =  278 bits (140), Expect = 8e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                            
Query: 784      aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301484 aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 55301425

                                                                            
Query: 844      tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301424 tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 55301365

                                    
Query: 904      acttcaccgtctctgctatg 923
                ||||||||||||||||||||
Sbjct: 55301364 acttcaccgtctctgctatg 55301345



 Score =  272 bits (137), Expect = 5e-70
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                            
Query: 88       agagtaactggaatgagattgttgacagctttgatgacatgaacctctcggagtccctcc 147
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55304055 agagtaactggaatgagattgttgacagctttgatgacatgaacctctcggagtccctcc 55303996

                                                                            
Query: 148      tccgtggcatctatgcctatggttttgagaagccctctgccatccagcagcgagccattc 207
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55303995 tccgtggcatctatgcctatggttttgagaagccctctgccatccagcagcgagccattc 55303936

                                 
Query: 208      ttccttgtatcaagggt 224
                |||||||||||||||||
Sbjct: 55303935 ttccttgtatcaagggt 55303919



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                            
Query: 532      ctcccaaatacatcaagatgtttgtattggatgaagctgatgagatgttaagccgagggt 591
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301965 ctcccaaatacatcaagatgtttgtattggatgaagctgatgagatgttaagccgagggt 55301906

                                                                     
Query: 592      tcaaggaccagatctatgacatattccaaaagctcaatagcaacacccaggtg 644
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301905 tcaaggaccagatctatgacatattccaaaagctcaatagcaacacccaggtg 55301853



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 923      gcacggggacatggaccagaaagaacgcgacgtcatcatgagggagttccgctcgggctc 982
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301210 gcacggggacatggaccagaaagaacgcgacgtcatcatgagggagttccgctcgggctc 55301151

                                                
Query: 983      cagcagagtgttgattaccacggatctgctgg 1014
                ||||||||||||||||||||||||||||||||
Sbjct: 55301150 cagcagagtgttgattaccacggatctgctgg 55301119



 Score =  163 bits (82), Expect = 3e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1013     ggccagaggcatcgacgtgcagcaggtttccttagtcatcaactatgaccttcccaccaa 1072
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55300844 ggccagaggcatcgacgtgcagcaggtttccttagtcatcaactatgaccttcccaccaa 55300785

                                      
Query: 1073     cagggaaaactacatccacagg 1094
                ||||||||||||||||||||||
Sbjct: 55300784 cagggaaaactacatccacagg 55300763



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                          
Query: 1379     aataaatgtcactttttgagacaaaagaaggaacaatgaccattttagacaccctttt 1436
                |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 55300382 aataaatgtcactttttgaggcaaaagaaggaaccatgaccattttagacaccctttt 55300325



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                  
Query: 40       gatccagagacaatggccccgatgggatggagcccgaaggcgtcatcgag 89
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55304372 gatccagagacaatggccccgatgggatggagcccgaaggcgtcatcgag 55304323



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                       
Query: 2        ctagtttctaaggatcatgtctgcgagtcaggattcccg 40
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 55305777 ctagtttctaaggatcatgtctgcgagtcaggattcccg 55305739


>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
          Length = 22458

 Score =  408 bits (206), Expect = e-111
 Identities = 206/206 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1091  caggatcggtcgtggcggacgttttggccgtaagggtgtggctattaacatggtgacaga 1150
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 caggatcggtcgtggcggacgttttggccgtaagggtgtggctattaacatggtgacaga 12015

                                                                         
Query: 1151  agaagacaagaggactctccgggacattgagaccttctacaacacctccatcgaggagat 1210
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 agaagacaagaggactctccgggacattgagaccttctacaacacctccatcgaggagat 12075

                                                                         
Query: 1211  gcccctcaatgttgctgacctcatctgaggcgctgctctgctctcccagccccagccagg 1270
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 gcccctcaatgttgctgacctcatctgaggcgctgctctgctctcccagccccagccagg 12135

                                       
Query: 1271  gatccgacctgtccttgaggggggct 1296
             ||||||||||||||||||||||||||
Sbjct: 12136 gatccgacctgtccttgaggggggct 12161



 Score =  333 bits (168), Expect = 2e-88
 Identities = 171/172 (99%)
 Strand = Plus / Plus

                                                                         
Query: 360   cagatacagaaggtggttatggcattaggagattacatgggtgcttcctgccatgcctgc 419
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10000 cagatacagaaggtggttatggcattaggagactacatgggtgcttcctgccatgcctgc 10059

                                                                         
Query: 420   attggtggtaccaatgtgcgtgctgaggtgcagaagctacagatggaagctccccacatc 479
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10060 attggtggtaccaatgtgcgtgctgaggtgcagaagctacagatggaagctccccacatc 10119

                                                                 
Query: 480   atcgtgggtaccccaggccgtgtgtttgatatgcttaacaggagatacttgt 531
             ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10120 atcgtgggtaccccaggccgtgtgtttgatatgcttaacaggagatacttgt 10171



 Score =  280 bits (141), Expect = 2e-72
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                        
Query: 222  ggttatgatgtgatcgctcaagcccaatctgggactgggaaaactgccactttcgccata 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8979 ggttatgatgtgatcgctcaagcccaatctgggactgggaaaactgccactttcgccata 9038

                                                                        
Query: 282  tcaattctgcagcagattgaattggatctaaaggccacccaggccttggtcctggcaccc 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9039 tcaattctgcagcagattgaattggatctaaaggccacccaggccttggtcctggcaccc 9098

                                 
Query: 342  actagagagttggctcagcag 362
            |||||||||||||||||||||
Sbjct: 9099 actagagagttggctcagcag 9119



 Score =  278 bits (140), Expect = 8e-72
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                         
Query: 784   aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 843
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 11123

                                                                         
Query: 844   tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 903
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11124 tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 11183

                                 
Query: 904   acttcaccgtctctgctatg 923
             ||||||||||||||||||||
Sbjct: 11184 acttcaccgtctctgctatg 11203



 Score =  272 bits (137), Expect = 5e-70
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                        
Query: 88   agagtaactggaatgagattgttgacagctttgatgacatgaacctctcggagtccctcc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8405 agagtaactggaatgagattgttgacagctttgatgacatgaacctctcggagtccctcc 8464

                                                                        
Query: 148  tccgtggcatctatgcctatggttttgagaagccctctgccatccagcagcgagccattc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8465 tccgtggcatctatgcctatggttttgagaagccctctgccatccagcagcgagccattc 8524

                             
Query: 208  ttccttgtatcaagggt 224
            |||||||||||||||||
Sbjct: 8525 ttccttgtatcaagggt 8541



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                         
Query: 532   ctcccaaatacatcaagatgtttgtattggatgaagctgatgagatgttaagccgagggt 591
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10497 ctcccaaatacatcaagatgtttgtattggatgaagctgatgagatgttaagccgagggt 10556

                                                                  
Query: 592   tcaaggaccagatctatgacatattccaaaagctcaatagcaacacccaggtg 644
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10557 tcaaggaccagatctatgacatattccaaaagctcaatagcaacacccaggtg 10609



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                         
Query: 923   gcacggggacatggaccagaaagaacgcgacgtcatcatgagggagttccgctcgggctc 982
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11415 gcacggggacatggaccagaaagaacgcgacgtcatcatgagggagttccgctcgggctc 11474

                                             
Query: 983   cagcagagtgttgattaccacggatctgctgg 1014
             ||||||||||||||||||||||||||||||||
Sbjct: 11475 cagcagagtgttgattaccacggatctgctgg 11506



 Score =  165 bits (83), Expect = 8e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                         
Query: 640   aggtggttttgctgtcagctacaatgccttctgatgtgctggaagtgaccaagaagttca 699
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10757 aggtggttttgctgtcagctacaatgccttctgatgtgctggaagtgaccaagaagttca 10816

                                    
Query: 700   tgcgggacccaattcgaatcctt 722
             |||||||||||||||||||||||
Sbjct: 10817 tgcgggacccaattcgaatcctt 10839



 Score =  163 bits (82), Expect = 3e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1013  ggccagaggcatcgacgtgcagcaggtttccttagtcatcaactatgaccttcccaccaa 1072
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11781 ggccagaggcatcgacgtgcagcaggtttccttagtcatcaactatgaccttcccaccaa 11840

                                   
Query: 1073  cagggaaaactacatccacagg 1094
             ||||||||||||||||||||||
Sbjct: 11841 cagggaaaactacatccacagg 11862



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                               
Query: 737   gctgaccctggagggtattcgccaattctacatcaatgtggaacgcgagg 786
             ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10940 gctgaccctggagggtattcgccaattctacatcaatgtggaacgcgagg 10989



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                  
Query: 1384  atgtcactttttgagacaaaagaaggaacaatgaccattttagacaccctttt 1436
             ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 12262 atgtcactttttgaggcaaaagaaggaaccatgaccattttagacaccctttt 12314


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 107/130 (82%)
 Strand = Plus / Plus

                                                                             
Query: 88        agagtaactggaatgagattgttgacagctttgatgacatgaacctctcggagtccctcc 147
                 |||| |||||||||||||||||||| | |||||| || |||||  |   |||||| || |
Sbjct: 133974459 agagcaactggaatgagattgttgataactttgacgatatgaatttaaaggagtctcttc 133974518

                                                                             
Query: 148       tccgtggcatctatgcctatggttttgagaagccctctgccatccagcagcgagccattc 207
                 | || ||||||||||| || |||||||||||||| || || || |||||| |||| ||| 
Sbjct: 133974519 ttcggggcatctatgcttacggttttgagaagccatcagctattcagcagagagctatta 133974578

                           
Query: 208       ttccttgtat 217
                 ||||||||||
Sbjct: 133974579 ttccttgtat 133974588



 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                             
Query: 543       atcaagatgtttgtattggatgaagctgatgagatgttaagccgagggttcaaggaccag 602
                 ||||| |||||||| ||||||||||| ||||| ||| | ||||||||||| ||||| || 
Sbjct: 133976062 atcaaaatgtttgttttggatgaagcagatgaaatgctgagccgagggtttaaggatcaa 133976121

                                     
Query: 603       atctatgacatattccaaaa 622
                 |||||||| || ||||||||
Sbjct: 133976122 atctatgagattttccaaaa 133976141



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                             
Query: 1125      ggtgtggctattaacatggtgacagaagaagacaagaggactctccgggacattgagacc 1184
                 ||||||||||| ||| | || || |||||||||||||||| ||| || ||||||||||| 
Sbjct: 133978912 ggtgtggctataaactttgttactgaagaagacaagaggattcttcgtgacattgagact 133978971

                         
Query: 1185      ttctacaa 1192
                 ||||||||
Sbjct: 133978972 ttctacaa 133978979


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,270,856
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 31
Length of query: 1436
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1415
Effective length of database: 2,808,413,156
Effective search space: 3973904615740
Effective search space used: 3973904615740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)