Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068647.1| mannose-P-dolichol utilization defect 1 prot... 403 e-112
Alignment gi|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos tauru... 133 2e-39
Alignment gi|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taur... 131 1e-38
Alignment gi|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos tau... 105 1e-28
Alignment gi|NP_001095348.1| PQ-loop repeat-containing protein 3 [Bos tau... 61 3e-09
>ref|NP_001068647.1| mannose-P-dolichol utilization defect 1 protein [Bos taurus].
Length = 246
Score = 403 bits (1036), Expect = e-112
Identities = 206/237 (86%), Positives = 215/237 (90%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MAAEVDGPLKRVLVP+LLPEKCYDQIFVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1 MAAEVDGPLKRVLVPLLLPEKCYDQIFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT+TIAFLV
Sbjct: 61 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITIAFLV 120
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
LHYRGQTV+GVAFL C+ QASN+P+VVVGRL+QAATNYRNG
Sbjct: 121 LHYRGQTVKGVAFLVCYALVLLVLLSPLTPQAVVTLLQASNMPSVVVGRLLQAATNYRNG 180
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQ+LFYWNA
Sbjct: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQVLFYWNA 237
>ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus].
Length = 406
Score = 133 bits (335), Expect(2) = 2e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus].
Length = 407
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus].
Length = 411
Score = 105 bits (262), Expect(2) = 1e-28
Identities = 59/120 (49%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 41.2 bits (95), Expect(2) = 1e-28
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261
>ref|NP_001095348.1| PQ-loop repeat-containing protein 3 [Bos taurus].
Length = 201
Score = 61.2 bits (147), Expect = 3e-09
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Frame = +3
Query: 1077 VKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTI 1256
+KLPQ+ +LGA+S+ G+SL S++LEL + Y +P ++ E L+ Q + +
Sbjct: 19 LKLPQISAVLGARSSRGISLPSLLLELAGFLVFLRYQCYYEYPLLTYLEFPILIAQDLIL 78
Query: 1257 AFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV--VGRLIQAA 1430
V H+ G R V ++ A N+ + + Q
Sbjct: 79 LLCVFHFNGDVRRAVPYI-----IICVSAWFILTLQQWILDLAMNLCTFISAASKFAQLQ 133
Query: 1431 TNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFY 1610
+++ +G +SA+T L ARI T++ T D + FV+ N I A +L Y
Sbjct: 134 YLWKSRDSGAMSALTWTLASYTCAARIMTTLMTTNDLTILTRFVIMLALNIWITATILHY 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 80,424,808
Number of extensions: 2377055
Number of successful extensions: 8067
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8031
Number of HSP's successfully gapped: 10
Length of query: 669
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 560
Effective length of database: 14,074,782
Effective search space: 7881877920
Effective search space used: 7881877920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546595.1| PREDICTED: similar to Mannose-P-dolichol utiliz... 388 e-107
Alignment gi|XP_851852.1| PREDICTED: similar to eukaryotic translation in... 133 2e-39
Alignment gi|XP_536623.2| PREDICTED: similar to eukaryotic translation in... 133 2e-39
Alignment gi|XP_864504.1| PREDICTED: similar to eukaryotic translation in... 133 2e-39
Alignment gi|XP_545242.2| PREDICTED: similar to eukaryotic translation in... 131 1e-38
Alignment gi|XP_860687.1| PREDICTED: similar to eukaryotic translation in... 131 1e-38
Alignment gi|XP_860499.1| PREDICTED: similar to eukaryotic translation in... 131 1e-38
Alignment gi|XP_860391.1| PREDICTED: similar to eukaryotic translation in... 131 1e-38
Alignment gi|XP_860790.1| PREDICTED: similar to eukaryotic translation in... 131 1e-38
Alignment gi|XP_860819.1| PREDICTED: similar to eukaryotic translation in... 131 1e-38
>ref|XP_546595.1| PREDICTED: similar to Mannose-P-dolichol utilization defect 1 protein
(Suppressor of Lec15 and Lec35 glycosylation mutation
homolog) (SL15) [Canis familiaris].
Length = 246
Score = 388 bits (997), Expect = e-107
Identities = 200/237 (84%), Positives = 209/237 (88%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MAAE +G LKR LVP+LLPEKCYDQIFVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1 MAAEEEGLLKRALVPLLLPEKCYDQIFVQWDLLHVPCLKILLSKSLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFKIL AKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFL+ QTVTI FLV
Sbjct: 61 QVFKILKAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLLFQTVTICFLV 120
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
LHYRGQT++GV FLAC+ QASNVPAVVVGRLIQAATNY+NG
Sbjct: 121 LHYRGQTMKGVTFLACYALVLLALLSPLTPQAVITLLQASNVPAVVVGRLIQAATNYQNG 180
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQLL+YWNA
Sbjct: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLYYWNA 237
>ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
isoform 1 isoform 2 [Canis familiaris].
Length = 406
Score = 133 bits (335), Expect(2) = 2e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
isoform 1 isoform 1 [Canis familiaris].
Length = 390
Score = 133 bits (335), Expect(2) = 2e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 240 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 286
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 287 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 314
Query: 533 ALS 541
L+
Sbjct: 315 LLA 317
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 215 PIRILVKKEELTLEGIRQFYINVERE 240
>ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
isoform 1 isoform 4 [Canis familiaris].
Length = 351
Score = 133 bits (335), Expect(2) = 2e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 201 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 247
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 248 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 275
Query: 533 ALS 541
L+
Sbjct: 276 LLA 278
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 176 PIRILVKKEELTLEGIRQFYINVERE 201
>ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 2 [Canis familiaris].
Length = 407
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 12 [Canis familiaris].
Length = 362
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 7 [Canis familiaris].
Length = 362
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 4 [Canis familiaris].
Length = 360
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|XP_860790.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 15 [Canis familiaris].
Length = 334
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 184 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 230
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 231 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 258
Query: 533 ALS 541
L+
Sbjct: 259 LLA 261
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 159 PIRILVKKEELTLEGIKQFYINVERE 184
>ref|XP_860819.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 16 [Canis familiaris].
Length = 312
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 162 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 208
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 209 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 236
Query: 533 ALS 541
L+
Sbjct: 237 LLA 239
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 137 PIRILVKKEELTLEGIKQFYINVERE 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,111,247
Number of extensions: 2451076
Number of successful extensions: 7951
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 7941
Number of HSP's successfully gapped: 61
Length of query: 669
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 560
Effective length of database: 15,240,880
Effective search space: 8534892800
Effective search space used: 8534892800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004861.2| mannose-P-dolichol utilization defect 1 protein... 401 e-111
Alignment gi|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Ho... 133 2e-39
Alignment gi|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 ... 133 2e-39
Alignment gi|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapien... 131 1e-38
Alignment gi|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapie... 105 1e-28
Alignment gi|NP_689604.1| PQ-loop repeat-containing protein 3 precursor [... 54 7e-07
Alignment gi|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens]. 42 5e-06
>ref|NP_004861.2| mannose-P-dolichol utilization defect 1 protein [Homo sapiens].
Length = 247
Score = 401 bits (1031), Expect = e-111
Identities = 205/237 (86%), Positives = 213/237 (89%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MAAE DGPLKR+LVPILLPEKCYDQ+FVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1 MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT+TI FLV
Sbjct: 61 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 120
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
+HYRGQTV+GVAFLAC+ QASNVPAVVVGRL+QAATNY NG
Sbjct: 121 MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG 180
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNA 237
>ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens].
Length = 406
Score = 133 bits (335), Expect(2) = 2e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 [Homo sapiens].
Length = 347
Score = 133 bits (334), Expect(2) = 2e-39
Identities = 75/122 (61%), Positives = 76/122 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 AL 538
L
Sbjct: 331 LL 332
Score = 49.7 bits (117), Expect(2) = 2e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens].
Length = 407
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens].
Length = 411
Score = 105 bits (262), Expect(2) = 1e-28
Identities = 59/120 (49%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 41.2 bits (95), Expect(2) = 1e-28
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261
>ref|NP_689604.1| PQ-loop repeat-containing protein 3 precursor [Homo sapiens].
Length = 202
Score = 53.5 bits (127), Expect = 7e-07
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 2/189 (1%)
Frame = +3
Query: 1050 LGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEAL 1229
LG+ A +KLPQ+ +L A+SA GLSL S++LEL + Y +P ++ E
Sbjct: 14 LGVCAA---LKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP 70
Query: 1230 FLMLQTVTIAFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV- 1406
L+ Q V + + H+ G + ++A A N+ +
Sbjct: 71 ILIAQDVILLLCIFHFNGNVKQATPYIA-----VLVSSWFILALQKWIIDLAMNLCTFIS 125
Query: 1407 -VGRLIQAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNG 1583
+ Q ++ +G +SA+T L RI T++ T D + FV+ N
Sbjct: 126 AASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLALNI 185
Query: 1584 LIAAQLLFY 1610
+ +L Y
Sbjct: 186 WVTVTVLRY 194
>ref|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens].
Length = 483
Score = 41.6 bits (96), Expect(2) = 5e-06
Identities = 30/117 (25%), Positives = 45/117 (38%)
Frame = +2
Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
K LC++Y ++TI QA+IF TRR WLT +M VS +
Sbjct: 325 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLL---------------- 368
Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
G++ ++R I++ FR G +VLITT+
Sbjct: 369 -----------------------------SGELTVEQRASIIQRFRDGKEKVLITTN 396
Score = 28.5 bits (62), Expect(2) = 5e-06
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYI 83
P I ++KEELTL IRQ+Y+
Sbjct: 297 PNVIKLRKEELTLNNIRQYYV 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,367,278
Number of extensions: 2398998
Number of successful extensions: 7702
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7681
Number of HSP's successfully gapped: 15
Length of query: 669
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 560
Effective length of database: 14,704,088
Effective search space: 8234289280
Effective search space used: 8234289280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036030.2| mannose-P-dolichol utilization defect 1 protein... 385 e-107
Alignment gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu... 133 1e-39
Alignment gi|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 ... 133 1e-39
Alignment gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M... 131 1e-38
Alignment gi|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c... 131 1e-38
Alignment gi|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b... 131 1e-38
Alignment gi|NP_619610.1| eukaryotic initiation factor 4A-III [Mus muscul... 105 1e-28
Alignment gi|NP_001136206.1| predicted gene, EG668137 [Mus musculus]. 102 1e-27
Alignment gi|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-... 103 3e-27
Alignment gi|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-... 103 3e-27
>ref|NP_036030.2| mannose-P-dolichol utilization defect 1 protein [Mus musculus].
Length = 247
Score = 385 bits (988), Expect = e-107
Identities = 194/237 (81%), Positives = 208/237 (87%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MA E DGP K +LVPILLPEKCYDQ+FVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1 MAGEADGPFKGLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFK+LGAKSAEGLSLQSVMLELVALTGT+VYSITNNFPFSSWGEALFL LQTV I FLV
Sbjct: 61 QVFKLLGAKSAEGLSLQSVMLELVALTGTVVYSITNNFPFSSWGEALFLTLQTVAICFLV 120
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
+HYRG+TV+GVAFLAC+ QASNVPAVVVG+L+QAATNYRNG
Sbjct: 121 MHYRGETVKGVAFLACYAMVLLALLSPLTPLAVVTLLQASNVPAVVVGKLLQAATNYRNG 180
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVF+LFGGSLARIFTS+QETGDPL+AG FVVSSLCNGLIAAQ+LFYWNA
Sbjct: 181 HTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLIAAQVLFYWNA 237
>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
Length = 406
Score = 133 bits (335), Expect(2) = 1e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 1e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus].
Length = 364
Score = 133 bits (335), Expect(2) = 1e-39
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 1e-39
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
Length = 407
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus].
Length = 362
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b [Mus musculus].
Length = 312
Score = 131 bits (330), Expect(2) = 1e-38
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 162 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 208
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 209 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 236
Query: 533 ALS 541
L+
Sbjct: 237 LLA 239
Score = 48.5 bits (114), Expect(2) = 1e-38
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 137 PIRILVKKEELTLEGIKQFYINVERE 162
>ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus].
Length = 411
Score = 105 bits (262), Expect(2) = 1e-28
Identities = 59/120 (49%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 41.2 bits (95), Expect(2) = 1e-28
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261
>ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus].
Length = 411
Score = 102 bits (253), Expect(2) = 1e-27
Identities = 58/120 (48%), Positives = 67/120 (55%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF T+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 41.2 bits (95), Expect(2) = 1e-27
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261
>ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
Length = 411
Score = 103 bits (257), Expect(2) = 3e-27
Identities = 58/120 (48%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HG+M QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGNMPQKERESIMKEFRSGASRVLISTD 335
Score = 38.1 bits (87), Expect(2) = 3e-27
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PI I VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PICILVKRDELTLEGIKQFFVAVERE 261
>ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
Length = 411
Score = 103 bits (257), Expect(2) = 3e-27
Identities = 58/120 (48%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HG+M QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGNMPQKERESIMKEFRSGASRVLISTD 335
Score = 38.1 bits (87), Expect(2) = 3e-27
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PI I VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PICILVKRDELTLEGIKQFFVAVERE 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,428,141
Number of extensions: 1986044
Number of successful extensions: 6219
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6191
Number of HSP's successfully gapped: 25
Length of query: 669
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 561
Effective length of database: 12,373,671
Effective search space: 6941629431
Effective search space used: 6941629431
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038084.1| mannose-P-dolichol utilization defect 1 [Sus... 417 e-116
Alignment gi|XP_003361284.1| PREDICTED: mannose-P-dolichol utilization de... 339 4e-93
Alignment gi|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrof... 133 9e-40
Alignment gi|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scro... 131 8e-39
Alignment gi|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-I... 131 8e-39
Alignment gi|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I... 133 2e-36
Alignment gi|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scr... 105 7e-29
Alignment gi|XP_003125428.1| PREDICTED: PQ-loop repeat-containing protein... 58 2e-08
Alignment gi|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-... 41 4e-06
Alignment gi|XP_003130839.2| PREDICTED: ATP-dependent RNA helicase DDX25-... 41 5e-06
>ref|NP_001038084.1| mannose-P-dolichol utilization defect 1 [Sus scrofa].
Length = 247
Score = 417 bits (1071), Expect = e-116
Identities = 216/237 (91%), Positives = 217/237 (91%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP
Sbjct: 1 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV
Sbjct: 61 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 120
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
LHYRGQTVRGVAFLAC+ QASNVPAVVVGRLIQAATNYRNG
Sbjct: 121 LHYRGQTVRGVAFLACYAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNG 180
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 181 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 237
>ref|XP_003361284.1| PREDICTED: mannose-P-dolichol utilization defect 1 protein-like [Sus
scrofa].
Length = 214
Score = 339 bits (869), Expect = 4e-93
Identities = 183/237 (77%), Positives = 183/237 (77%)
Frame = +3
Query: 909 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP
Sbjct: 1 MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 60
Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
QVFKILG SWGEALFLMLQTVTIAFLV
Sbjct: 61 QVFKILG---------------------------------XSWGEALFLMLQTVTIAFLV 87
Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
LHYRGQTVRGVAFLACH QASNVPAVVVGRLIQAATNYRNG
Sbjct: 88 LHYRGQTVRGVAFLACHAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNG 147
Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 148 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 204
>ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa].
Length = 406
Score = 133 bits (335), Expect(2) = 9e-40
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 533 ALS 541
L+
Sbjct: 331 LLA 333
Score = 49.7 bits (117), Expect(2) = 9e-40
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256
>ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa].
Length = 407
Score = 131 bits (330), Expect(2) = 8e-39
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 533 ALS 541
L+
Sbjct: 332 LLA 334
Score = 48.5 bits (114), Expect(2) = 8e-39
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257
>ref|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Sus scrofa].
Length = 323
Score = 131 bits (330), Expect(2) = 8e-39
Identities = 73/123 (59%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+
Sbjct: 218 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 264
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 265 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 292
Query: 533 ALS 541
L+
Sbjct: 293 LLA 295
Score = 48.5 bits (114), Expect(2) = 8e-39
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 193 PIRILVKKEELTLEGIKQFYINVERE 218
>ref|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Sus scrofa].
Length = 413
Score = 133 bits (335), Expect(2) = 2e-36
Identities = 75/123 (60%), Positives = 77/123 (62%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM
Sbjct: 263 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 309
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 310 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 337
Query: 533 ALS 541
L+
Sbjct: 338 LLA 340
Score = 38.5 bits (88), Expect(2) = 2e-36
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI LTLEGIRQFYINV+RE
Sbjct: 238 PIRILXXXXXLTLEGIRQFYINVERE 263
>ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa].
Length = 411
Score = 105 bits (262), Expect(2) = 7e-29
Identities = 59/120 (49%), Positives = 68/120 (56%)
Frame = +2
Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
+EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM +FTVS+M
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307
Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335
Score = 41.2 bits (95), Expect(2) = 7e-29
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYINVKRE 98
PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261
>ref|XP_003125428.1| PREDICTED: PQ-loop repeat-containing protein 3-like [Sus scrofa].
Length = 202
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
Frame = +3
Query: 1068 SLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT 1247
S +KLPQ+ +L A+SA G+SL S++LEL + Y +P ++ E L+ Q
Sbjct: 17 SAALKLPQISSVLRAQSARGISLPSLLLELAGFLVFLRYQSYYEYPLLTYLEYPILLTQD 76
Query: 1248 VTIAFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV--VGRLI 1421
+ + + H+ G R ++A A N + +
Sbjct: 77 LVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDL-----AMNFCTFISAASKFA 131
Query: 1422 QAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQL 1601
Q ++ +G +SA+T L RI T++ T D + FVV+ N + A +
Sbjct: 132 QLQYLWKTRDSGAVSALTWSLASYSCAVRIITTLMTTNDLTILTRFVVTLALNIWVTATI 191
Query: 1602 LFY 1610
L Y
Sbjct: 192 LRY 194
>ref|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-like [Sus scrofa].
Length = 541
Score = 41.2 bits (95), Expect(2) = 4e-06
Identities = 30/117 (25%), Positives = 43/117 (36%)
Frame = +2
Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
K LC++Y +TI QA+IF TRR WLT +M VS +
Sbjct: 383 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLL---------------- 426
Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
G++ +R I++ FR G +VLITT+
Sbjct: 427 -----------------------------RGELTVDQRAAIIQRFRDGKEKVLITTN 454
Score = 28.5 bits (62), Expect(2) = 4e-06
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYI 83
P I ++KEELTL IRQ+Y+
Sbjct: 355 PNVIKLRKEELTLNNIRQYYV 375
>ref|XP_003130839.2| PREDICTED: ATP-dependent RNA helicase DDX25-like [Sus scrofa].
Length = 428
Score = 40.8 bits (94), Expect(2) = 5e-06
Identities = 30/117 (25%), Positives = 43/117 (36%)
Frame = +2
Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
K LC++Y +TI QA+IF TRR WLT +M VS +
Sbjct: 270 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLL---------------- 313
Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
G++ +R I++ FR G +VLITT+
Sbjct: 314 -----------------------------SGELTVDQRAAIIQRFRDGKEKVLITTN 341
Score = 28.5 bits (62), Expect(2) = 5e-06
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 21 PIRIPVKKEELTLEGIRQFYI 83
P I ++KEELTL IRQ+Y+
Sbjct: 242 PNVIKLRKEELTLNNIRQYYV 262
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,965,436
Number of extensions: 1538449
Number of successful extensions: 5175
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5159
Number of HSP's successfully gapped: 21
Length of query: 669
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 563
Effective length of database: 8,704,850
Effective search space: 4900830550
Effective search space used: 4900830550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002129
(2008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1001 0.0
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 819 0.0
Sscrofa_Chr04 674 0.0
Sscrofa_Chr08 125 1e-25
>Sscrofa_Chr12
|| Length = 63588571
Score = 1001 bits (505), Expect = 0.0
Identities = 527/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 1 accaagaagttcatgcgggacc-aattcgaatccctgtcaagaaggaagagctgaccctg 59
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 55301658 accaagaagttcatgcgggacccaattcgaatccttgtcaagaaggaagagctgaccctg 55301599
Query: 60 gagggtattcgccaattctacatcaatgtgaagcgcgaggtggggcccagtgcaggaggc 119
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 55301598 gagggtattcgccaattctacatcaatgtggaacgcgaggtggggcccagtgcaggaggc 55301539
Query: 120 gggcctggcaggaaggcggggggatagcccctgactgatttctcccccacccccaggagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301538 gggcctggcaggaaggcggggggatagcccctgactgatttctcccccacccccaggagt 55301479
Query: 180 ggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcagtcatct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301478 ggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcagtcatct 55301419
Query: 240 tcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgagacttca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301418 tcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgagacttca 55301359
Query: 300 ccgtctctgctatggtgagcgcccgccgccaccgctgcgcccgcggtttcccagcaagag 359
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 55301358 ccgtctctgctatggtgagcgcccgccgccaccgctgcggccgtggtttcccagcaagag 55301299
Query: 360 gggggctgtcacaggcctacttccccagccagttctcgctgaaccagcacacctacctgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301298 gggggctgtcacaggcctacttccccagccagttctcgctgaaccagcacacctacctgc 55301239
Query: 420 taacagccgccttctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301238 taacagccgccttctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacg 55301179
Query: 480 tcatcatgagggagttccgctcgggctccagcagagtgttgattaccacggat 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301178 tcatcatgagggagttccgctcgggctccagcagagtgttgattaccacggat 55301126
Score = 950 bits (479), Expect = 0.0
Identities = 479/479 (100%)
Strand = Plus / Minus
Query: 533 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295682 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 55295623
Query: 593 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295622 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 55295563
Query: 653 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295562 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 55295503
Query: 713 cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295502 cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 55295443
Query: 773 tgggatggcgtaaatagcggggaactggggaggtcctgacttatcgcgagaagacaggag 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295442 tgggatggcgtaaatagcggggaactggggaggtcctgacttatcgcgagaagacaggag 55295383
Query: 833 gcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgactggcgg 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295382 gcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgactggcgg 55295323
Query: 893 aagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgcc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295322 aagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgcc 55295263
Query: 953 gattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295262 gattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg 55295204
Score = 789 bits (398), Expect = 0.0
Identities = 461/478 (96%), Gaps = 3/478 (0%)
Strand = Plus / Minus
Query: 1525 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292071 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 55292012
Query: 1585 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292011 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 55291952
Query: 1645 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55291951 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 55291892
Query: 1705 ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 1764
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 55291891 ccacatgaatcacttgctggtgtgacgtaaccattccccattctgcaactttcgtggaaa 55291832
Query: 1765 tgcttggttgacccagatccttaaaaaggatggggtagagattttcaggctattttgcca 1824
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 55291831 tgcttggttgacccagatccttagaaaggatggggtagagattttcaggctattttgcca 55291772
Query: 1825 cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 1884
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55291771 cttaatgtgtgcagccctgtgtatatactgttgattcagtgatttggctgagattctccc 55291712
Query: 1885 tttagca-gaactcccagctatttacttattctggggcaaaagtcttaccctggccttcc 1943
||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 55291711 tttagcaggaactcccagctatttacttattct-gggcaaaagtcttaccctgtccttcc 55291653
Query: 1944 ttccttcccttctgaccctaaaagaacaaacccgaacagggaaagggacttgtggctg 2001
| ||||||||||||||||| | || | || |||||| | ||||||||||||||||
Sbjct: 55291652 gt-cttcccttctgaccctagaggacagagcctgaacagtggaagggacttgtggctg 55291596
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1077 gtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgagtctc 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293268 gtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgagtctc 55293209
Query: 1137 cagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcaccaac 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293208 cagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcaccaac 55293149
Query: 1197 aacttccccttcag 1210
||||||||||||||
Sbjct: 55293148 aacttccccttcag 55293135
Score = 232 bits (117), Expect = 6e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 1295 aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 1354
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 55292609 aggtgtggctttcctagcttgctatgctgtgctcctgctgatgctgctttcaccactgac 55292550
Query: 1355 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292549 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 55292490
Query: 1415 g 1415
|
Sbjct: 55292489 g 55292489
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 1415 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292314 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 55292255
Query: 1475 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 1527
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292254 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 55292202
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1208 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292815 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 55292756
Query: 1268 cctgcactacagaggacagactgtgagaggtg 1299
||||||||||||||||||||||||||||||||
Sbjct: 55292755 cctgcactacagaggacagactgtgagaggtg 55292724
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1011 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293520 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 55293461
Query: 1071 cttctgg 1077
|||||||
Sbjct: 55293460 cttctgg 55293454
>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
Length = 22458
Score = 819 bits (413), Expect = 0.0
Identities = 463/477 (97%), Gaps = 2/477 (0%)
Strand = Plus / Plus
Query: 1525 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20405 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 20464
Query: 1585 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20465 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 20524
Query: 1645 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 20584
Query: 1705 ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20585 ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 20644
Query: 1765 tgcttggttgacccagatccttaaaaaggatggggtagagattttcaggctattttgcca 1824
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20645 tgcttggttgacccagatccttagaaaggatggggtagagattttcaggctattttgcca 20704
Query: 1825 cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20705 cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 20764
Query: 1885 tttagcagaactcccagctatttacttattctggggcaaaagtcttaccctggccttcct 1944
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 20765 tttagcagaactcccagctatttacttattct-gggcaaaagtcttaccctgtccttccg 20823
Query: 1945 tccttcccttctgaccctaaaagaacaaacccgaacagggaaagggacttgtggctg 2001
| ||||||||||||||||| | || | || |||||| | ||||||||||||||||
Sbjct: 20824 t-cttcccttctgaccctagaggacagagcctgaacagtggaagggacttgtggctg 20879
Score = 561 bits (283), Expect = e-157
Identities = 295/299 (98%)
Strand = Plus / Plus
Query: 50 gctgaccctggagggtattcgccaattctacatcaatgtgaagcgcgaggtggggcccag 109
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 10940 gctgaccctggagggtattcgccaattctacatcaatgtggaacgcgaggtggggcccag 10999
Query: 110 tgcaggaggcgggcctggcaggaaggcggggggatagcccctgactgatttctcccccac 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11000 tgcaggaggcgggcctggcaggaaggcggggggatagcccctgactgatttctcccccac 11059
Query: 170 ccccaggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccag 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11060 ccccaggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccag 11119
Query: 230 gcagtcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11120 gcagtcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcc 11179
Query: 290 cgagacttcaccgtctctgctatggtgagcgcccgccgccaccgctgcgcccgcggttt 348
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 11180 cgagacttcaccgtctctgctatggtgagcgcccgccgccaccgctgcggccgtggttt 11238
Score = 553 bits (279), Expect = e-154
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 533 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16714 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 16773
Query: 593 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16774 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 16833
Query: 653 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16834 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 16893
Query: 713 cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 772
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16894 cagcagggagggcgcgtccagaaaacgcggtcctgggatgggacctactttccgctaagg 16953
Query: 773 tgggatggcgtaaatagcggggaactggggaggtcctgactta 815
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16954 tgggatggcgtaaatagcggggaactggggaggtcctgactta 16996
Score = 367 bits (185), Expect = 2e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 827 caggaggcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgac 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17097 caggaggcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgac 17156
Query: 887 tggcggaagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgtt 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17157 tggcggaagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgtt 17216
Query: 947 ggtgccgattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgct 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17217 ggtgccgattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgct 17276
Query: 1007 tcacg 1011
|||||
Sbjct: 17277 tcacg 17281
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 372 aggcctacttccccagccagttctcgctgaaccagcacacctacctgctaacagccgcct 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11339 aggcctacttccccagccagttctcgctgaaccagcacacctacctgctaacagccgcct 11398
Query: 432 tctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacgtcatcatgaggg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 tctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacgtcatcatgaggg 11458
Query: 492 agttccgctcgggctccagcagagtgttgattaccacggat 532
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 11459 agttccgctcgggctccagcagagtgttgattaccacggat 11499
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1295 aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19867 aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 19926
Query: 1355 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19927 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 19986
Query: 1415 g 1415
|
Sbjct: 19987 g 19987
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1415 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20162 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 20221
Query: 1475 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 1527
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20222 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 20274
Score = 182 bits (92), Expect = 5e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1208 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19661 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 19720
Query: 1268 cctgcactacagaggacagactgtgagaggtg 1299
||||||||||||||||||||||||||||||||
Sbjct: 19721 cctgcactacagaggacagactgtgagaggtg 19752
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1011 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18876 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 18935
Query: 1071 cttctgg 1077
|||||||
Sbjct: 18936 cttctgg 18942
Score = 65.9 bits (33), Expect = 8e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1077 gtaaaactgccccaagtgtttaaaatcctggga 1109
|||||||||||||||||||||||||||||||||
Sbjct: 19209 gtaaaactgccccaagtgtttaaaatcctggga 19241
>Sscrofa_Chr04
|| Length = 143465943
Score = 674 bits (340), Expect = 0.0
Identities = 836/999 (83%), Gaps = 28/999 (2%)
Strand = Plus / Plus
Query: 956 tcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg---t 1012
||||||||||||||||||||| ||| ||||||| |||| |||||||||||||||| |
Sbjct: 103785619 tcttttacctgagaaatgctatgactgaattttcatccactgggacttgcttcacgaagt 103785678
Query: 1013 tccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctcact 1072
||| |||||| ||||||||| ||| | ||||||||| ||| |||||| |||||||||||
Sbjct: 103785679 tccttgcctccggattctcctgagccagtgcctggggttggccattgtagctggctcact 103785738
Query: 1073 tctggtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgag 1132
||||| ||||| ||||||||||||||||||||||||||||||||| | |||||| || |
Sbjct: 103785739 tctggaaaaaccgccccaagtgtttaaaatcctgggagccaagagcgg-gaagggttgtg 103785797
Query: 1133 tctccagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcac 1192
||| | |||||| |||||||||||||||||| |||| ||||| |||||| |||||||||
Sbjct: 103785798 tctaccgtcggtgatgctggagctggtggcaatgacccggaccttggtctgcagcatcac 103785857
Query: 1193 caacaacttccccttcagctcttggggtgaagccctgttcctgatgctccagacagtcac 1252
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 103785858 caacaacttccccttcagctcttggggacaagccctgttcctgatgctccagagagtcac 103785917
Query: 1253 catcgccttcctggtcctgcactacagaggacagactgtgagaggtgtggctttcctagc 1312
|||| || ||||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 103785918 catcaccctcctggtcctgcacttgagaggacagactgtgaaaggtggggctttcctagc 103785977
Query: 1313 ttgccatgctgtgctcctgctgatgctgctttcaccactgacgcccctggctctagtgac 1372
||| ||||| || |||| |||||||||||| |||||||||||||||||||| ||| |||
Sbjct: 103785978 gtgctatgctctggtcctcctgatgctgcttccaccactgacgcccctggctgtagagac 103786037
Query: 1373 cctgctccaggcttccaacgtgcctgctgttgtggtgggaaggctgatccaggcagccac 1432
|| ||||||||| |||||| |||||||| ||| ||||||||||||| || ||||||||
Sbjct: 103786038 cccgctccaggcctccaacacacctgctgtggtgatgggaaggctgattcaagcagccac 103786097
Query: 1433 caactaccgcaatgggcacacgggccagctctcagccatcacagtctttctgctctttgg 1492
| | ||| || ||| || ||||||| | ||||||| |||||||||||||||||||
Sbjct: 103786098 cgaagaccagaacaggcgtacaggccagcacggagccatcgcagtctttctgctctttgg 103786157
Query: 1493 gggctccctggcccgcatcttcacctccattcaggaaactggagaccctctcctggctgg 1552
||||||||||||||| |||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct: 103786158 gggctccctggcccgagtcttcacctccattcatgaaaccggagaccccctcacggctgg 103786217
Query: 1553 aacctttgtagtctcttccctctgcaatggcctcatcgctgcccagctcctcttctattg 1612
|||||||| ||||||| ||||||||| |||||| | ||||||||||||||||||| ||
Sbjct: 103786218 aacctttgcagtctctcccctctgcagcggcctcgttgctgcccagctcctcttctgctg 103786277
Query: 1613 gaatgcaaagcctccccacaagaagaaaaaggagcattagagtccagctggctactg--- 1669
|||||||||| |||||| ||||||||| |||||||| | |||| |||||||| |||
Sbjct: 103786278 gaatgcaaaggctcccctcaagaagaagaaggagcagtggagttgagctggctcctggag 103786337
Query: 1670 --------gcgtttccattccccacccaacctcggggtccttcccacatgaatcacttgc 1721
| |||||| ||| ||||||| || |||| |||||||| |||| | ||||
Sbjct: 103786338 taccttccgtgtttcccttcaccacccagccctgggggccttcccatctgaaccggttgc 103786397
Query: 1722 tggtgtgac--ctaaccattccccattc---------tgcaactttcgtggaaatgcttg 1770
| ||||||| |||| ||||||| ||| ||| |||| ||| |||||| ||
Sbjct: 103786398 tagtgtgacttttaacgattcccccttcttctgtagttgctacttgagtgcaaatgcctg 103786457
Query: 1771 gttgacccagatccttaaaaagga-tggggtagagattttcaggctattttgccacttaa 1829
|||||| |||||||||| |||||| |||| | ||||||||||||||||||| || ||||
Sbjct: 103786458 gttgactcagatccttagaaaggacaggggcacagattttcaggctattttgacatttaa 103786517
Query: 1830 tgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccctttag 1889
||||| ||| |||| ||||| || ||||| || | |||||||||||||||| |||| |
Sbjct: 103786518 tgtgtacagtcctgtgtataccctattgatgcaattatttggctgagattcttccttcaa 103786577
Query: 1890 cagaactcccagctatttacttattctggggcaaaagtc 1928
||||| | |||||| ||||| |||||| |||||||||||
Sbjct: 103786578 cagaatttccagctctttacctattct-gggcaaaagtc 103786615
Score = 93.7 bits (47), Expect = 4e-16
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 898 agctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgccgattc 957
|||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||
Sbjct: 103785430 agctttgcaatatggcggctgaagtagatgggccgctcaaacaggtgctggtgctgattc 103785489
Query: 958 ttt 960
|||
Sbjct: 103785490 ttt 103785492
>Sscrofa_Chr08
|| Length = 148491826
Score = 125 bits (63), Expect = 1e-25
Identities = 117/134 (87%), Gaps = 2/134 (1%)
Strand = Plus / Minus
Query: 174 aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 233
|||| |||||||||||||| |||||||||||||| ||||||| | | |||||||||||||
Sbjct: 109745985 aggactggaagctggacacactgtgtgacttgtatgaaaccccggctatcacccaggcag 109745926
Query: 234 tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 293
|||||||||| |||||| |||||||||| || ||||||| | |||||||| ||| |||
Sbjct: 109745925 tcatcttcattaacacctgaaggaaggttga--ggctcactggaaagatgcatgcctgag 109745868
Query: 294 acttcaccgtctct 307
||||||| ||||||
Sbjct: 109745867 acttcactgtctct 109745854
Score = 61.9 bits (31), Expect = 1e-06
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 566 tcagatggaagaagacaagatggcgccgagcaggaggagcggagaaatgcaggagaataa 625
|||| ||||||||| ||| | || ||| || |||| |||||||||||||| |||| ||||
Sbjct: 29675926 tcagctggaagaaggcaaaacggtgcccagaaggaagagcggagaaatgcgggaggataa 29675985
Query: 626 atcctgctgcc 636
|||||||||||
Sbjct: 29675986 atcctgctgcc 29675996
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,016,035
Number of extensions: 679
Number of successful extensions: 679
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 24
Length of query: 2008
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1986
Effective length of database: 2,808,408,574
Effective search space: 5577499427964
Effective search space used: 5577499427964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)