Animal-Genome cDNA 20110601C-002129


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068647.1| mannose-P-dolichol utilization defect 1 prot...   403   e-112
Alignment   gi|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos tauru...   133   2e-39
Alignment   gi|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taur...   131   1e-38
Alignment   gi|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos tau...   105   1e-28
Alignment   gi|NP_001095348.1| PQ-loop repeat-containing protein 3 [Bos tau...    61   3e-09

>ref|NP_001068647.1| mannose-P-dolichol utilization defect 1 protein [Bos taurus].
          Length = 246

 Score =  403 bits (1036), Expect = e-112
 Identities = 206/237 (86%), Positives = 215/237 (90%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MAAEVDGPLKRVLVP+LLPEKCYDQIFVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1    MAAEVDGPLKRVLVPLLLPEKCYDQIFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT+TIAFLV
Sbjct: 61   QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITIAFLV 120

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            LHYRGQTV+GVAFL C+                    QASN+P+VVVGRL+QAATNYRNG
Sbjct: 121  LHYRGQTVKGVAFLVCYALVLLVLLSPLTPQAVVTLLQASNMPSVVVGRLLQAATNYRNG 180

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQ+LFYWNA
Sbjct: 181  HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQVLFYWNA 237


>ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus].
          Length = 406

 Score =  133 bits (335), Expect(2) = 2e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus].
          Length = 407

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus].
          Length = 411

 Score =  105 bits (262), Expect(2) = 1e-28
 Identities = 59/120 (49%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335



 Score = 41.2 bits (95), Expect(2) = 1e-28
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261


>ref|NP_001095348.1| PQ-loop repeat-containing protein 3 [Bos taurus].
          Length = 201

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
 Frame = +3

Query: 1077 VKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTI 1256
            +KLPQ+  +LGA+S+ G+SL S++LEL      + Y     +P  ++ E   L+ Q + +
Sbjct: 19   LKLPQISAVLGARSSRGISLPSLLLELAGFLVFLRYQCYYEYPLLTYLEFPILIAQDLIL 78

Query: 1257 AFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV--VGRLIQAA 1430
               V H+ G   R V ++                        A N+   +    +  Q  
Sbjct: 79   LLCVFHFNGDVRRAVPYI-----IICVSAWFILTLQQWILDLAMNLCTFISAASKFAQLQ 133

Query: 1431 TNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFY 1610
              +++  +G +SA+T  L      ARI T++  T D  +   FV+    N  I A +L Y
Sbjct: 134  YLWKSRDSGAMSALTWTLASYTCAARIMTTLMTTNDLTILTRFVIMLALNIWITATILHY 193


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 80,424,808
Number of extensions: 2377055
Number of successful extensions: 8067
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8031
Number of HSP's successfully gapped: 10
Length of query: 669
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 560
Effective length of database: 14,074,782
Effective search space: 7881877920
Effective search space used: 7881877920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_546595.1| PREDICTED: similar to Mannose-P-dolichol utiliz...   388   e-107
Alignment   gi|XP_851852.1| PREDICTED: similar to eukaryotic translation in...   133   2e-39
Alignment   gi|XP_536623.2| PREDICTED: similar to eukaryotic translation in...   133   2e-39
Alignment   gi|XP_864504.1| PREDICTED: similar to eukaryotic translation in...   133   2e-39
Alignment   gi|XP_545242.2| PREDICTED: similar to eukaryotic translation in...   131   1e-38
Alignment   gi|XP_860687.1| PREDICTED: similar to eukaryotic translation in...   131   1e-38
Alignment   gi|XP_860499.1| PREDICTED: similar to eukaryotic translation in...   131   1e-38
Alignment   gi|XP_860391.1| PREDICTED: similar to eukaryotic translation in...   131   1e-38
Alignment   gi|XP_860790.1| PREDICTED: similar to eukaryotic translation in...   131   1e-38
Alignment   gi|XP_860819.1| PREDICTED: similar to eukaryotic translation in...   131   1e-38

>ref|XP_546595.1| PREDICTED: similar to Mannose-P-dolichol utilization defect 1 protein
            (Suppressor of Lec15 and Lec35 glycosylation mutation
            homolog) (SL15) [Canis familiaris].
          Length = 246

 Score =  388 bits (997), Expect = e-107
 Identities = 200/237 (84%), Positives = 209/237 (88%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MAAE +G LKR LVP+LLPEKCYDQIFVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1    MAAEEEGLLKRALVPLLLPEKCYDQIFVQWDLLHVPCLKILLSKSLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFKIL AKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFL+ QTVTI FLV
Sbjct: 61   QVFKILKAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLLFQTVTICFLV 120

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            LHYRGQT++GV FLAC+                    QASNVPAVVVGRLIQAATNY+NG
Sbjct: 121  LHYRGQTMKGVTFLACYALVLLALLSPLTPQAVITLLQASNVPAVVVGRLIQAATNYQNG 180

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQLL+YWNA
Sbjct: 181  HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLYYWNA 237


>ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris].
          Length = 406

 Score =  133 bits (335), Expect(2) = 2e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris].
          Length = 390

 Score =  133 bits (335), Expect(2) = 2e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 240 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 286

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 287 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 314

Query: 533 ALS 541
            L+
Sbjct: 315 LLA 317



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 215 PIRILVKKEELTLEGIRQFYINVERE 240


>ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 4 [Canis familiaris].
          Length = 351

 Score =  133 bits (335), Expect(2) = 2e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 201 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 247

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 248 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 275

Query: 533 ALS 541
            L+
Sbjct: 276 LLA 278



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 176 PIRILVKKEELTLEGIRQFYINVERE 201


>ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 2 [Canis familiaris].
          Length = 407

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 12 [Canis familiaris].
          Length = 362

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 7 [Canis familiaris].
          Length = 362

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 4 [Canis familiaris].
          Length = 360

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|XP_860790.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 15 [Canis familiaris].
          Length = 334

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 184 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 230

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 231 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 258

Query: 533 ALS 541
            L+
Sbjct: 259 LLA 261



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 159 PIRILVKKEELTLEGIKQFYINVERE 184


>ref|XP_860819.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 16 [Canis familiaris].
          Length = 312

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 162 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 208

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 209 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 236

Query: 533 ALS 541
            L+
Sbjct: 237 LLA 239



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 137 PIRILVKKEELTLEGIKQFYINVERE 162


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,111,247
Number of extensions: 2451076
Number of successful extensions: 7951
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 7941
Number of HSP's successfully gapped: 61
Length of query: 669
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 560
Effective length of database: 15,240,880
Effective search space: 8534892800
Effective search space used: 8534892800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004861.2| mannose-P-dolichol utilization defect 1 protein...   401   e-111
Alignment   gi|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Ho...   133   2e-39
Alignment   gi|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 ...   133   2e-39
Alignment   gi|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapien...   131   1e-38
Alignment   gi|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapie...   105   1e-28
Alignment   gi|NP_689604.1| PQ-loop repeat-containing protein 3 precursor [...    54   7e-07
Alignment   gi|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens].      42   5e-06

>ref|NP_004861.2| mannose-P-dolichol utilization defect 1 protein [Homo sapiens].
          Length = 247

 Score =  401 bits (1031), Expect = e-111
 Identities = 205/237 (86%), Positives = 213/237 (89%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MAAE DGPLKR+LVPILLPEKCYDQ+FVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1    MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT+TI FLV
Sbjct: 61   QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLV 120

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            +HYRGQTV+GVAFLAC+                    QASNVPAVVVGRL+QAATNY NG
Sbjct: 121  MHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNG 180

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVFLLFGGSLARIFTSIQETGDPL+AGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 181  HTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNA 237


>ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens].
          Length = 406

 Score =  133 bits (335), Expect(2) = 2e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 [Homo sapiens].
          Length = 347

 Score =  133 bits (334), Expect(2) = 2e-39
 Identities = 75/122 (61%), Positives = 76/122 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 AL 538
            L
Sbjct: 331 LL 332



 Score = 49.7 bits (117), Expect(2) = 2e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens].
          Length = 407

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens].
          Length = 411

 Score =  105 bits (262), Expect(2) = 1e-28
 Identities = 59/120 (49%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335



 Score = 41.2 bits (95), Expect(2) = 1e-28
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261


>ref|NP_689604.1| PQ-loop repeat-containing protein 3 precursor [Homo sapiens].
          Length = 202

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 2/189 (1%)
 Frame = +3

Query: 1050 LGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEAL 1229
            LG+ A    +KLPQ+  +L A+SA GLSL S++LEL      + Y     +P  ++ E  
Sbjct: 14   LGVCAA---LKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP 70

Query: 1230 FLMLQTVTIAFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV- 1406
             L+ Q V +   + H+ G   +   ++A                       A N+   + 
Sbjct: 71   ILIAQDVILLLCIFHFNGNVKQATPYIA-----VLVSSWFILALQKWIIDLAMNLCTFIS 125

Query: 1407 -VGRLIQAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNG 1583
               +  Q    ++   +G +SA+T  L       RI T++  T D  +   FV+    N 
Sbjct: 126  AASKFAQLQCLWKTRDSGTVSALTWSLSSYTCATRIITTLMTTNDFTILLRFVIMLALNI 185

Query: 1584 LIAAQLLFY 1610
             +   +L Y
Sbjct: 186  WVTVTVLRY 194


>ref|NP_037396.3| ATP-dependent RNA helicase DDX25 [Homo sapiens].
          Length = 483

 Score = 41.6 bits (96), Expect(2) = 5e-06
 Identities = 30/117 (25%), Positives = 45/117 (38%)
 Frame = +2

Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
           K   LC++Y ++TI QA+IF  TRR   WLT +M      VS +                
Sbjct: 325 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLL---------------- 368

Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                         G++  ++R  I++ FR G  +VLITT+
Sbjct: 369 -----------------------------SGELTVEQRASIIQRFRDGKEKVLITTN 396



 Score = 28.5 bits (62), Expect(2) = 5e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYI 83
           P  I ++KEELTL  IRQ+Y+
Sbjct: 297 PNVIKLRKEELTLNNIRQYYV 317


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,367,278
Number of extensions: 2398998
Number of successful extensions: 7702
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7681
Number of HSP's successfully gapped: 15
Length of query: 669
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 560
Effective length of database: 14,704,088
Effective search space: 8234289280
Effective search space used: 8234289280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_036030.2| mannose-P-dolichol utilization defect 1 protein...   385   e-107
Alignment   gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu...   133   1e-39
Alignment   gi|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 ...   133   1e-39
Alignment   gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M...   131   1e-38
Alignment   gi|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c...   131   1e-38
Alignment   gi|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b...   131   1e-38
Alignment   gi|NP_619610.1| eukaryotic initiation factor 4A-III [Mus muscul...   105   1e-28
Alignment   gi|NP_001136206.1| predicted gene, EG668137 [Mus musculus].          102   1e-27
Alignment   gi|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-...   103   3e-27
Alignment   gi|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-...   103   3e-27

>ref|NP_036030.2| mannose-P-dolichol utilization defect 1 protein [Mus musculus].
          Length = 247

 Score =  385 bits (988), Expect = e-107
 Identities = 194/237 (81%), Positives = 208/237 (87%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MA E DGP K +LVPILLPEKCYDQ+FVQWDLLHVPCLKILLSK LGLGIVAGSLLVKLP
Sbjct: 1    MAGEADGPFKGLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFK+LGAKSAEGLSLQSVMLELVALTGT+VYSITNNFPFSSWGEALFL LQTV I FLV
Sbjct: 61   QVFKLLGAKSAEGLSLQSVMLELVALTGTVVYSITNNFPFSSWGEALFLTLQTVAICFLV 120

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            +HYRG+TV+GVAFLAC+                    QASNVPAVVVG+L+QAATNYRNG
Sbjct: 121  MHYRGETVKGVAFLACYAMVLLALLSPLTPLAVVTLLQASNVPAVVVGKLLQAATNYRNG 180

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVF+LFGGSLARIFTS+QETGDPL+AG FVVSSLCNGLIAAQ+LFYWNA
Sbjct: 181  HTGQLSAITVFMLFGGSLARIFTSVQETGDPLMAGVFVVSSLCNGLIAAQVLFYWNA 237


>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
          Length = 406

 Score =  133 bits (335), Expect(2) = 1e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 1e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus].
          Length = 364

 Score =  133 bits (335), Expect(2) = 1e-39
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 1e-39
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
          Length = 407

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus].
          Length = 362

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|NP_001116509.1| eukaryotic initiation factor 4A-II isoform b [Mus musculus].
          Length = 312

 Score =  131 bits (330), Expect(2) = 1e-38
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 162 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 208

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 209 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 236

Query: 533 ALS 541
            L+
Sbjct: 237 LLA 239



 Score = 48.5 bits (114), Expect(2) = 1e-38
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 137 PIRILVKKEELTLEGIKQFYINVERE 162


>ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus].
          Length = 411

 Score =  105 bits (262), Expect(2) = 1e-28
 Identities = 59/120 (49%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335



 Score = 41.2 bits (95), Expect(2) = 1e-28
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261


>ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus].
          Length = 411

 Score =  102 bits (253), Expect(2) = 1e-27
 Identities = 58/120 (48%), Positives = 67/120 (55%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF  T+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335



 Score = 41.2 bits (95), Expect(2) = 1e-27
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261


>ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
          Length = 411

 Score =  103 bits (257), Expect(2) = 3e-27
 Identities = 58/120 (48%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HG+M QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGNMPQKERESIMKEFRSGASRVLISTD 335



 Score = 38.1 bits (87), Expect(2) = 3e-27
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PI I VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PICILVKRDELTLEGIKQFFVAVERE 261


>ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
          Length = 411

 Score =  103 bits (257), Expect(2) = 3e-27
 Identities = 58/120 (48%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HG+M QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGNMPQKERESIMKEFRSGASRVLISTD 335



 Score = 38.1 bits (87), Expect(2) = 3e-27
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PI I VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PICILVKRDELTLEGIKQFFVAVERE 261


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,428,141
Number of extensions: 1986044
Number of successful extensions: 6219
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6191
Number of HSP's successfully gapped: 25
Length of query: 669
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 561
Effective length of database: 12,373,671
Effective search space: 6941629431
Effective search space used: 6941629431
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001038084.1| mannose-P-dolichol utilization defect 1 [Sus...   417   e-116
Alignment   gi|XP_003361284.1| PREDICTED: mannose-P-dolichol utilization de...   339   4e-93
Alignment   gi|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrof...   133   9e-40
Alignment   gi|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scro...   131   8e-39
Alignment   gi|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-I...   131   8e-39
Alignment   gi|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I...   133   2e-36
Alignment   gi|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scr...   105   7e-29
Alignment   gi|XP_003125428.1| PREDICTED: PQ-loop repeat-containing protein...    58   2e-08
Alignment   gi|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-...    41   4e-06
Alignment   gi|XP_003130839.2| PREDICTED: ATP-dependent RNA helicase DDX25-...    41   5e-06

>ref|NP_001038084.1| mannose-P-dolichol utilization defect 1 [Sus scrofa].
          Length = 247

 Score =  417 bits (1071), Expect = e-116
 Identities = 216/237 (91%), Positives = 217/237 (91%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP
Sbjct: 1    MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV
Sbjct: 61   QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 120

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            LHYRGQTVRGVAFLAC+                    QASNVPAVVVGRLIQAATNYRNG
Sbjct: 121  LHYRGQTVRGVAFLACYAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNG 180

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 181  HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 237


>ref|XP_003361284.1| PREDICTED: mannose-P-dolichol utilization defect 1 protein-like [Sus
            scrofa].
          Length = 214

 Score =  339 bits (869), Expect = 4e-93
 Identities = 183/237 (77%), Positives = 183/237 (77%)
 Frame = +3

Query: 909  MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 1088
            MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP
Sbjct: 1    MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLP 60

Query: 1089 QVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLV 1268
            QVFKILG                                  SWGEALFLMLQTVTIAFLV
Sbjct: 61   QVFKILG---------------------------------XSWGEALFLMLQTVTIAFLV 87

Query: 1269 LHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVVVGRLIQAATNYRNG 1448
            LHYRGQTVRGVAFLACH                    QASNVPAVVVGRLIQAATNYRNG
Sbjct: 88   LHYRGQTVRGVAFLACHAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNG 147

Query: 1449 HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 1619
            HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA
Sbjct: 148  HTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNA 204


>ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa].
          Length = 406

 Score =  133 bits (335), Expect(2) = 9e-40
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 256 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 302

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 303 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 330

Query: 533 ALS 541
            L+
Sbjct: 331 LLA 333



 Score = 49.7 bits (117), Expect(2) = 9e-40
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGIRQFYINV+RE
Sbjct: 231 PIRILVKKEELTLEGIRQFYINVERE 256


>ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa].
          Length = 407

 Score =  131 bits (330), Expect(2) = 8e-39
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 257 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 303

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 304 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 331

Query: 533 ALS 541
            L+
Sbjct: 332 LLA 334



 Score = 48.5 bits (114), Expect(2) = 8e-39
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 232 PIRILVKKEELTLEGIKQFYINVERE 257


>ref|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Sus scrofa].
          Length = 323

 Score =  131 bits (330), Expect(2) = 8e-39
 Identities = 73/123 (59%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIF+NTRRKVDWLTEKMHARDFTVSA+             
Sbjct: 218 EEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL------------- 264

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 265 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 292

Query: 533 ALS 541
            L+
Sbjct: 293 LLA 295



 Score = 48.5 bits (114), Expect(2) = 8e-39
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VKKEELTLEGI+QFYINV+RE
Sbjct: 193 PIRILVKKEELTLEGIKQFYINVERE 218


>ref|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Sus scrofa].
          Length = 413

 Score =  133 bits (335), Expect(2) = 2e-36
 Identities = 75/123 (60%), Positives = 77/123 (62%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM             
Sbjct: 263 EEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM------------- 309

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDMDQKERDVIMREFRSGSSRVLITTD
Sbjct: 310 --------------------------------HGDMDQKERDVIMREFRSGSSRVLITTD 337

Query: 533 ALS 541
            L+
Sbjct: 338 LLA 340



 Score = 38.5 bits (88), Expect(2) = 2e-36
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI      LTLEGIRQFYINV+RE
Sbjct: 238 PIRILXXXXXLTLEGIRQFYINVERE 263


>ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa].
          Length = 411

 Score =  105 bits (262), Expect(2) = 7e-29
 Identities = 59/120 (49%), Positives = 68/120 (56%)
 Frame = +2

Query: 173 QEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFP 352
           +EWK DTLCDLY+TLTITQAVIF NT+RKVDWLTEKM   +FTVS+M             
Sbjct: 261 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM------------- 307

Query: 353 ARGGLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                           HGDM QKER+ IM+EFRSG+SRVLI+TD
Sbjct: 308 --------------------------------HGDMPQKERESIMKEFRSGASRVLISTD 335



 Score = 41.2 bits (95), Expect(2) = 7e-29
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYINVKRE 98
           PIRI VK++ELTLEGI+QF++ V+RE
Sbjct: 236 PIRILVKRDELTLEGIKQFFVAVERE 261


>ref|XP_003125428.1| PREDICTED: PQ-loop repeat-containing protein 3-like [Sus scrofa].
          Length = 202

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
 Frame = +3

Query: 1068 SLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQT 1247
            S  +KLPQ+  +L A+SA G+SL S++LEL      + Y     +P  ++ E   L+ Q 
Sbjct: 17   SAALKLPQISSVLRAQSARGISLPSLLLELAGFLVFLRYQSYYEYPLLTYLEYPILLTQD 76

Query: 1248 VTIAFLVLHYRGQTVRGVAFLACHXXXXXXXXXXXXXXXXXXXXQASNVPAVV--VGRLI 1421
            + +   + H+ G   R   ++A                       A N    +    +  
Sbjct: 77   LVLLLCIFHFSGHVERAAFYIALFVSAWFVLSLRKWIMDL-----AMNFCTFISAASKFA 131

Query: 1422 QAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQL 1601
            Q    ++   +G +SA+T  L       RI T++  T D  +   FVV+   N  + A +
Sbjct: 132  QLQYLWKTRDSGAVSALTWSLASYSCAVRIITTLMTTNDLTILTRFVVTLALNIWVTATI 191

Query: 1602 LFY 1610
            L Y
Sbjct: 192  LRY 194


>ref|XP_003130102.2| PREDICTED: ATP-dependent RNA helicase DDX25-like [Sus scrofa].
          Length = 541

 Score = 41.2 bits (95), Expect(2) = 4e-06
 Identities = 30/117 (25%), Positives = 43/117 (36%)
 Frame = +2

Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
           K   LC++Y  +TI QA+IF  TRR   WLT +M      VS +                
Sbjct: 383 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLL---------------- 426

Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                         G++   +R  I++ FR G  +VLITT+
Sbjct: 427 -----------------------------RGELTVDQRAAIIQRFRDGKEKVLITTN 454



 Score = 28.5 bits (62), Expect(2) = 4e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYI 83
           P  I ++KEELTL  IRQ+Y+
Sbjct: 355 PNVIKLRKEELTLNNIRQYYV 375


>ref|XP_003130839.2| PREDICTED: ATP-dependent RNA helicase DDX25-like [Sus scrofa].
          Length = 428

 Score = 40.8 bits (94), Expect(2) = 5e-06
 Identities = 30/117 (25%), Positives = 43/117 (36%)
 Frame = +2

Query: 182 KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMVSARRHRCARGFPARG 361
           K   LC++Y  +TI QA+IF  TRR   WLT +M      VS +                
Sbjct: 270 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLL---------------- 313

Query: 362 GLSQAYFPSQFSLNQHTYLLTAAFCFLL*HGDMDQKERDVIMREFRSGSSRVLITTD 532
                                         G++   +R  I++ FR G  +VLITT+
Sbjct: 314 -----------------------------SGELTVDQRAAIIQRFRDGKEKVLITTN 341



 Score = 28.5 bits (62), Expect(2) = 5e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 21  PIRIPVKKEELTLEGIRQFYI 83
           P  I ++KEELTL  IRQ+Y+
Sbjct: 242 PNVIKLRKEELTLNNIRQYYV 262


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,965,436
Number of extensions: 1538449
Number of successful extensions: 5175
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5159
Number of HSP's successfully gapped: 21
Length of query: 669
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 563
Effective length of database: 8,704,850
Effective search space: 4900830550
Effective search space used: 4900830550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002129
         (2008 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1001   0.0  
gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   819   0.0  
Sscrofa_Chr04                                                         674   0.0  
Sscrofa_Chr08                                                         125   1e-25

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1001 bits (505), Expect = 0.0
 Identities = 527/533 (98%), Gaps = 1/533 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1        accaagaagttcatgcgggacc-aattcgaatccctgtcaagaaggaagagctgaccctg 59
                |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 55301658 accaagaagttcatgcgggacccaattcgaatccttgtcaagaaggaagagctgaccctg 55301599

                                                                            
Query: 60       gagggtattcgccaattctacatcaatgtgaagcgcgaggtggggcccagtgcaggaggc 119
                |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 55301598 gagggtattcgccaattctacatcaatgtggaacgcgaggtggggcccagtgcaggaggc 55301539

                                                                            
Query: 120      gggcctggcaggaaggcggggggatagcccctgactgatttctcccccacccccaggagt 179
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301538 gggcctggcaggaaggcggggggatagcccctgactgatttctcccccacccccaggagt 55301479

                                                                            
Query: 180      ggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcagtcatct 239
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301478 ggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcagtcatct 55301419

                                                                            
Query: 240      tcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgagacttca 299
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301418 tcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgagacttca 55301359

                                                                            
Query: 300      ccgtctctgctatggtgagcgcccgccgccaccgctgcgcccgcggtttcccagcaagag 359
                ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 55301358 ccgtctctgctatggtgagcgcccgccgccaccgctgcggccgtggtttcccagcaagag 55301299

                                                                            
Query: 360      gggggctgtcacaggcctacttccccagccagttctcgctgaaccagcacacctacctgc 419
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301298 gggggctgtcacaggcctacttccccagccagttctcgctgaaccagcacacctacctgc 55301239

                                                                            
Query: 420      taacagccgccttctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacg 479
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301238 taacagccgccttctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacg 55301179

                                                                     
Query: 480      tcatcatgagggagttccgctcgggctccagcagagtgttgattaccacggat 532
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55301178 tcatcatgagggagttccgctcgggctccagcagagtgttgattaccacggat 55301126



 Score =  950 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Minus

                                                                            
Query: 533      gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 592
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295682 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 55295623

                                                                            
Query: 593      gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 652
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295622 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 55295563

                                                                            
Query: 653      caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 712
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295562 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 55295503

                                                                            
Query: 713      cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 772
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295502 cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 55295443

                                                                            
Query: 773      tgggatggcgtaaatagcggggaactggggaggtcctgacttatcgcgagaagacaggag 832
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295442 tgggatggcgtaaatagcggggaactggggaggtcctgacttatcgcgagaagacaggag 55295383

                                                                            
Query: 833      gcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgactggcgg 892
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295382 gcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgactggcgg 55295323

                                                                            
Query: 893      aagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgcc 952
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295322 aagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgcc 55295263

                                                                           
Query: 953      gattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg 1011
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55295262 gattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg 55295204



 Score =  789 bits (398), Expect = 0.0
 Identities = 461/478 (96%), Gaps = 3/478 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1525     aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 1584
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292071 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 55292012

                                                                            
Query: 1585     tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 1644
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292011 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 55291952

                                                                            
Query: 1645     agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 1704
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55291951 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 55291892

                                                                            
Query: 1705     ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 1764
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 55291891 ccacatgaatcacttgctggtgtgacgtaaccattccccattctgcaactttcgtggaaa 55291832

                                                                            
Query: 1765     tgcttggttgacccagatccttaaaaaggatggggtagagattttcaggctattttgcca 1824
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 55291831 tgcttggttgacccagatccttagaaaggatggggtagagattttcaggctattttgcca 55291772

                                                                            
Query: 1825     cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 1884
                ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55291771 cttaatgtgtgcagccctgtgtatatactgttgattcagtgatttggctgagattctccc 55291712

                                                                            
Query: 1885     tttagca-gaactcccagctatttacttattctggggcaaaagtcttaccctggccttcc 1943
                ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 55291711 tttagcaggaactcccagctatttacttattct-gggcaaaagtcttaccctgtccttcc 55291653

                                                                          
Query: 1944     ttccttcccttctgaccctaaaagaacaaacccgaacagggaaagggacttgtggctg 2001
                 | ||||||||||||||||| | ||   | || |||||| | ||||||||||||||||
Sbjct: 55291652 gt-cttcccttctgaccctagaggacagagcctgaacagtggaagggacttgtggctg 55291596



 Score =  266 bits (134), Expect = 4e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1077     gtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgagtctc 1136
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293268 gtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgagtctc 55293209

                                                                            
Query: 1137     cagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcaccaac 1196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293208 cagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcaccaac 55293149

                              
Query: 1197     aacttccccttcag 1210
                ||||||||||||||
Sbjct: 55293148 aacttccccttcag 55293135



 Score =  232 bits (117), Expect = 6e-58
 Identities = 120/121 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1295     aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 1354
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 55292609 aggtgtggctttcctagcttgctatgctgtgctcctgctgatgctgctttcaccactgac 55292550

                                                                            
Query: 1355     gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 1414
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292549 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 55292490

                 
Query: 1415     g 1415
                |
Sbjct: 55292489 g 55292489



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1415     gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 1474
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292314 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 55292255

                                                                     
Query: 1475     agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 1527
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292254 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 55292202



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1208     cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 1267
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55292815 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 55292756

                                                
Query: 1268     cctgcactacagaggacagactgtgagaggtg 1299
                ||||||||||||||||||||||||||||||||
Sbjct: 55292755 cctgcactacagaggacagactgtgagaggtg 55292724



 Score =  133 bits (67), Expect = 4e-28
 Identities = 67/67 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1011     gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 1070
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55293520 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 55293461

                       
Query: 1071     cttctgg 1077
                |||||||
Sbjct: 55293460 cttctgg 55293454


>gb|GL893964.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2677
          Length = 22458

 Score =  819 bits (413), Expect = 0.0
 Identities = 463/477 (97%), Gaps = 2/477 (0%)
 Strand = Plus / Plus

                                                                         
Query: 1525  aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 1584
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20405 aggaaactggagaccctctcctggctggaacctttgtagtctcttccctctgcaatggcc 20464

                                                                         
Query: 1585  tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 1644
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20465 tcatcgctgcccagctcctcttctattggaatgcaaagcctccccacaagaagaaaaagg 20524

                                                                         
Query: 1645  agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 1704
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20525 agcattagagtccagctggctactggcgtttccattccccacccaacctcggggtccttc 20584

                                                                         
Query: 1705  ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 1764
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20585 ccacatgaatcacttgctggtgtgacctaaccattccccattctgcaactttcgtggaaa 20644

                                                                         
Query: 1765  tgcttggttgacccagatccttaaaaaggatggggtagagattttcaggctattttgcca 1824
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20645 tgcttggttgacccagatccttagaaaggatggggtagagattttcaggctattttgcca 20704

                                                                         
Query: 1825  cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 1884
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20705 cttaatgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccc 20764

                                                                         
Query: 1885  tttagcagaactcccagctatttacttattctggggcaaaagtcttaccctggccttcct 1944
             |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| 
Sbjct: 20765 tttagcagaactcccagctatttacttattct-gggcaaaagtcttaccctgtccttccg 20823

                                                                      
Query: 1945  tccttcccttctgaccctaaaagaacaaacccgaacagggaaagggacttgtggctg 2001
             | ||||||||||||||||| | ||   | || |||||| | ||||||||||||||||
Sbjct: 20824 t-cttcccttctgaccctagaggacagagcctgaacagtggaagggacttgtggctg 20879



 Score =  561 bits (283), Expect = e-157
 Identities = 295/299 (98%)
 Strand = Plus / Plus

                                                                         
Query: 50    gctgaccctggagggtattcgccaattctacatcaatgtgaagcgcgaggtggggcccag 109
             |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 10940 gctgaccctggagggtattcgccaattctacatcaatgtggaacgcgaggtggggcccag 10999

                                                                         
Query: 110   tgcaggaggcgggcctggcaggaaggcggggggatagcccctgactgatttctcccccac 169
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11000 tgcaggaggcgggcctggcaggaaggcggggggatagcccctgactgatttctcccccac 11059

                                                                         
Query: 170   ccccaggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccag 229
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11060 ccccaggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccag 11119

                                                                         
Query: 230   gcagtcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcc 289
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11120 gcagtcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcc 11179

                                                                        
Query: 290   cgagacttcaccgtctctgctatggtgagcgcccgccgccaccgctgcgcccgcggttt 348
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 11180 cgagacttcaccgtctctgctatggtgagcgcccgccgccaccgctgcggccgtggttt 11238



 Score =  553 bits (279), Expect = e-154
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                         
Query: 533   gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16714 gctctttctccctcaacttcgagcactgtaaagtcagatggaagaagacaagatggcgcc 16773

                                                                         
Query: 593   gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 652
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16774 gagcaggaggagcggagaaatgcaggagaataaatcctgctgccgaaacggaagcttaaa 16833

                                                                         
Query: 653   caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 712
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16834 caaagatgcgaaagctggaactgcgcaggcgtacagctttggcaagctttaaaactccag 16893

                                                                         
Query: 713   cagcagggagggcgcgtccagaaaacgcggtcctgggacgggacctactttccgctaagg 772
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 16894 cagcagggagggcgcgtccagaaaacgcggtcctgggatgggacctactttccgctaagg 16953

                                                        
Query: 773   tgggatggcgtaaatagcggggaactggggaggtcctgactta 815
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16954 tgggatggcgtaaatagcggggaactggggaggtcctgactta 16996



 Score =  367 bits (185), Expect = 2e-98
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                         
Query: 827   caggaggcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgac 886
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17097 caggaggcggagagctcggagtgcgcatgcgcaccgcgaatcaatggcggtctgcgcgac 17156

                                                                         
Query: 887   tggcggaagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgtt 946
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17157 tggcggaagctagctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgtt 17216

                                                                         
Query: 947   ggtgccgattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgct 1006
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17217 ggtgccgattcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgct 17276

                  
Query: 1007  tcacg 1011
             |||||
Sbjct: 17277 tcacg 17281



 Score =  319 bits (161), Expect = 3e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                         
Query: 372   aggcctacttccccagccagttctcgctgaaccagcacacctacctgctaacagccgcct 431
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11339 aggcctacttccccagccagttctcgctgaaccagcacacctacctgctaacagccgcct 11398

                                                                         
Query: 432   tctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacgtcatcatgaggg 491
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11399 tctgtttcctgttgtagcacggggacatggaccagaaagaacgcgacgtcatcatgaggg 11458

                                                      
Query: 492   agttccgctcgggctccagcagagtgttgattaccacggat 532
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11459 agttccgctcgggctccagcagagtgttgattaccacggat 11499



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1295  aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 1354
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19867 aggtgtggctttcctagcttgccatgctgtgctcctgctgatgctgctttcaccactgac 19926

                                                                         
Query: 1355  gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 1414
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19927 gcccctggctctagtgaccctgctccaggcttccaacgtgcctgctgttgtggtgggaag 19986

              
Query: 1415  g 1415
             |
Sbjct: 19987 g 19987



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1415  gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 1474
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20162 gctgatccaggcagccaccaactaccgcaatgggcacacgggccagctctcagccatcac 20221

                                                                  
Query: 1475  agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 1527
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20222 agtctttctgctctttgggggctccctggcccgcatcttcacctccattcagg 20274



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1208  cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 1267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19661 cagctcttggggtgaagccctgttcctgatgctccagacagtcaccatcgccttcctggt 19720

                                             
Query: 1268  cctgcactacagaggacagactgtgagaggtg 1299
             ||||||||||||||||||||||||||||||||
Sbjct: 19721 cctgcactacagaggacagactgtgagaggtg 19752



 Score =  133 bits (67), Expect = 4e-28
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                         
Query: 1011  gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 1070
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18876 gttccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctca 18935

                    
Query: 1071  cttctgg 1077
             |||||||
Sbjct: 18936 cttctgg 18942



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                              
Query: 1077  gtaaaactgccccaagtgtttaaaatcctggga 1109
             |||||||||||||||||||||||||||||||||
Sbjct: 19209 gtaaaactgccccaagtgtttaaaatcctggga 19241


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  674 bits (340), Expect = 0.0
 Identities = 836/999 (83%), Gaps = 28/999 (2%)
 Strand = Plus / Plus

                                                                             
Query: 956       tcttttacctgagaaatgctacgaccaaattttcgtccagtgggacttgcttcacg---t 1012
                 ||||||||||||||||||||| |||  ||||||| |||| ||||||||||||||||   |
Sbjct: 103785619 tcttttacctgagaaatgctatgactgaattttcatccactgggacttgcttcacgaagt 103785678

                                                                             
Query: 1013      tccctgcctcaagattctcctcagcaaatgcctggggctgggcattgtggctggctcact 1072
                 ||| ||||||  ||||||||| ||| | ||||||||| ||| |||||| |||||||||||
Sbjct: 103785679 tccttgcctccggattctcctgagccagtgcctggggttggccattgtagctggctcact 103785738

                                                                             
Query: 1073      tctggtaaaactgccccaagtgtttaaaatcctgggagccaagagtgctgaagggctgag 1132
                 ||||| ||||| ||||||||||||||||||||||||||||||||| |  |||||| || |
Sbjct: 103785739 tctggaaaaaccgccccaagtgtttaaaatcctgggagccaagagcgg-gaagggttgtg 103785797

                                                                             
Query: 1133      tctccagtcggtaatgctggagctggtggcactgactgggaccatggtctacagcatcac 1192
                 ||| | |||||| |||||||||||||||||| ||||  ||||| |||||| |||||||||
Sbjct: 103785798 tctaccgtcggtgatgctggagctggtggcaatgacccggaccttggtctgcagcatcac 103785857

                                                                             
Query: 1193      caacaacttccccttcagctcttggggtgaagccctgttcctgatgctccagacagtcac 1252
                 |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||
Sbjct: 103785858 caacaacttccccttcagctcttggggacaagccctgttcctgatgctccagagagtcac 103785917

                                                                             
Query: 1253      catcgccttcctggtcctgcactacagaggacagactgtgagaggtgtggctttcctagc 1312
                 |||| || |||||||||||||||  |||||||||||||||| ||||| ||||||||||||
Sbjct: 103785918 catcaccctcctggtcctgcacttgagaggacagactgtgaaaggtggggctttcctagc 103785977

                                                                             
Query: 1313      ttgccatgctgtgctcctgctgatgctgctttcaccactgacgcccctggctctagtgac 1372
                  ||| ||||| || |||| |||||||||||| |||||||||||||||||||| ||| |||
Sbjct: 103785978 gtgctatgctctggtcctcctgatgctgcttccaccactgacgcccctggctgtagagac 103786037

                                                                             
Query: 1373      cctgctccaggcttccaacgtgcctgctgttgtggtgggaaggctgatccaggcagccac 1432
                 || ||||||||| ||||||   |||||||| ||| ||||||||||||| || ||||||||
Sbjct: 103786038 cccgctccaggcctccaacacacctgctgtggtgatgggaaggctgattcaagcagccac 103786097

                                                                             
Query: 1433      caactaccgcaatgggcacacgggccagctctcagccatcacagtctttctgctctttgg 1492
                 | |  |||  ||  |||  || ||||||| |  ||||||| |||||||||||||||||||
Sbjct: 103786098 cgaagaccagaacaggcgtacaggccagcacggagccatcgcagtctttctgctctttgg 103786157

                                                                             
Query: 1493      gggctccctggcccgcatcttcacctccattcaggaaactggagaccctctcctggctgg 1552
                 |||||||||||||||  |||||||||||||||| ||||| |||||||| |||  ||||||
Sbjct: 103786158 gggctccctggcccgagtcttcacctccattcatgaaaccggagaccccctcacggctgg 103786217

                                                                             
Query: 1553      aacctttgtagtctcttccctctgcaatggcctcatcgctgcccagctcctcttctattg 1612
                 |||||||| ||||||| |||||||||  |||||| | |||||||||||||||||||  ||
Sbjct: 103786218 aacctttgcagtctctcccctctgcagcggcctcgttgctgcccagctcctcttctgctg 103786277

                                                                             
Query: 1613      gaatgcaaagcctccccacaagaagaaaaaggagcattagagtccagctggctactg--- 1669
                 |||||||||| |||||| ||||||||| |||||||| | ||||  |||||||| |||   
Sbjct: 103786278 gaatgcaaaggctcccctcaagaagaagaaggagcagtggagttgagctggctcctggag 103786337

                                                                             
Query: 1670      --------gcgtttccattccccacccaacctcggggtccttcccacatgaatcacttgc 1721
                         | |||||| ||| ||||||| ||  |||| ||||||||  |||| |  ||||
Sbjct: 103786338 taccttccgtgtttcccttcaccacccagccctgggggccttcccatctgaaccggttgc 103786397

                                                                             
Query: 1722      tggtgtgac--ctaaccattccccattc---------tgcaactttcgtggaaatgcttg 1770
                 | |||||||   |||| ||||||| |||         ||| ||||  ||| |||||| ||
Sbjct: 103786398 tagtgtgacttttaacgattcccccttcttctgtagttgctacttgagtgcaaatgcctg 103786457

                                                                             
Query: 1771      gttgacccagatccttaaaaagga-tggggtagagattttcaggctattttgccacttaa 1829
                 |||||| |||||||||| ||||||  |||| | ||||||||||||||||||| || ||||
Sbjct: 103786458 gttgactcagatccttagaaaggacaggggcacagattttcaggctattttgacatttaa 103786517

                                                                             
Query: 1830      tgtgtgcagccctgagtatatactgttgattcagtgatttggctgagattctccctttag 1889
                 ||||| ||| |||| |||||  || ||||| || | |||||||||||||||| |||| | 
Sbjct: 103786518 tgtgtacagtcctgtgtataccctattgatgcaattatttggctgagattcttccttcaa 103786577

                                                        
Query: 1890      cagaactcccagctatttacttattctggggcaaaagtc 1928
                 ||||| | |||||| ||||| |||||| |||||||||||
Sbjct: 103786578 cagaatttccagctctttacctattct-gggcaaaagtc 103786615



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                             
Query: 898       agctttgcaatatggcggctgaggtagatgggccgctcaaacgggtgttggtgccgattc 957
                 |||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||
Sbjct: 103785430 agctttgcaatatggcggctgaagtagatgggccgctcaaacaggtgctggtgctgattc 103785489

                    
Query: 958       ttt 960
                 |||
Sbjct: 103785490 ttt 103785492


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/134 (87%), Gaps = 2/134 (1%)
 Strand = Plus / Minus

                                                                             
Query: 174       aggagtggaagctggacaccctgtgtgacttgtacgaaaccctgaccatcacccaggcag 233
                 |||| |||||||||||||| |||||||||||||| ||||||| | | |||||||||||||
Sbjct: 109745985 aggactggaagctggacacactgtgtgacttgtatgaaaccccggctatcacccaggcag 109745926

                                                                             
Query: 234       tcatcttcatcaacacccgaaggaaggtcgactggctcacggagaagatgcacgcccgag 293
                 |||||||||| |||||| |||||||||| ||  ||||||| |  |||||||| ||| |||
Sbjct: 109745925 tcatcttcattaacacctgaaggaaggttga--ggctcactggaaagatgcatgcctgag 109745868

                               
Query: 294       acttcaccgtctct 307
                 ||||||| ||||||
Sbjct: 109745867 acttcactgtctct 109745854



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                            
Query: 566      tcagatggaagaagacaagatggcgccgagcaggaggagcggagaaatgcaggagaataa 625
                |||| ||||||||| ||| | || ||| || |||| |||||||||||||| |||| ||||
Sbjct: 29675926 tcagctggaagaaggcaaaacggtgcccagaaggaagagcggagaaatgcgggaggataa 29675985

                           
Query: 626      atcctgctgcc 636
                |||||||||||
Sbjct: 29675986 atcctgctgcc 29675996


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,016,035
Number of extensions: 679
Number of successful extensions: 679
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 24
Length of query: 2008
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1986
Effective length of database: 2,808,408,574
Effective search space: 5577499427964
Effective search space used: 5577499427964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)