Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991368.1| lysosomal-associated transmembrane protein 4A [... 391 e-109
Alignment gi|NP_991371.1| lysosomal-associated transmembrane protein 4B [... 165 5e-41
Alignment gi|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 be... 123 3e-28
Alignment gi|XP_002690106.1| PREDICTED: lysosomal-associated protein tran... 122 4e-28
Alignment gi|NP_001039583.1| lysosomal-associated transmembrane protein 5... 51 2e-06
>ref|NP_991368.1| lysosomal-associated transmembrane protein 4A [Bos taurus].
Length = 233
Score = 391 bits (1004), Expect = e-109
Identities = 193/221 (87%), Positives = 194/221 (87%)
Frame = +3
Query: 168 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 347
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 348 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 527
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 528 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 707
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 708 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTL*MAVKM 830
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPT MAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_991371.1| lysosomal-associated transmembrane protein 4B [Bos taurus].
Length = 226
Score = 165 bits (418), Expect = 5e-41
Identities = 83/191 (43%), Positives = 114/191 (59%), Gaps = 2/191 (1%)
Frame = +3
Query: 204 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 383
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ + E+ G++
Sbjct: 9 RFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSS--ELGGDF-- 64
Query: 384 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 560
E M D N C+ A+SVLM +I +M YGA + W+IPFFCY++FDF L+ LVA++ L
Sbjct: 65 -EFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVL 123
Query: 561 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 737
Y I+EY+ QL PDFPYK K YLI+CVWNCY+YI
Sbjct: 124 VYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCYRYI 183
Query: 738 NNRNMPEIAVY 770
N RN ++ VY
Sbjct: 184 NGRNSSDVLVY 194
>ref|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 beta-like [Bos
taurus].
Length = 557
Score = 123 bits (308), Expect = 3e-28
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Frame = +3
Query: 204 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 383
R+ ++C C TI+LG WY++VN ++ ++L + P + E+ G++
Sbjct: 369 RYSCSQCKLLC-----TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF-- 419
Query: 384 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 560
E M D N C+ +S LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L
Sbjct: 420 -EFMDDANMCIAIVISFLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTIL 478
Query: 561 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 737
Y I+EY QL PD PYK K YLI+CVWNCY+Y
Sbjct: 479 VYPNSIQEYTRQLPPDIPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYT 538
Query: 738 NNRNMPEIAVY 770
RN ++ VY
Sbjct: 539 TGRNSSDVLVY 549
>ref|XP_002690106.1| PREDICTED: lysosomal-associated protein transmembrane 4B-like [Bos
taurus].
Length = 185
Score = 122 bits (307), Expect = 4e-28
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 252 TIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMAD-NACVLFAVS 428
TI+LG WY++VN ++ ++L + P + E+ G++ E M D N C+ +S
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF---EFMDDANMCIAIVIS 62
Query: 429 VLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL-PD 605
LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L Y I+EY QL PD
Sbjct: 63 FLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPD 122
Query: 606 FPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVY 770
PYK K YLI+CVWNCY+Y RN ++ VY
Sbjct: 123 IPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVY 177
>ref|NP_001039583.1| lysosomal-associated transmembrane protein 5 [Bos taurus].
Length = 264
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/116 (26%), Positives = 60/116 (51%)
Frame = +3
Query: 225 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADN 404
C C +VR T L +++++++L+ I +VEV H + + ++ G +E ++
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKA----SCKFSKTGYLRIAELVSS- 66
Query: 405 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 572
F + ++FIIS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 ----FLLITMLFIISLSLLVGVVKNREKYLLPFLSLQIMDFLLCLLTLMGSYIELP 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,205,862
Number of extensions: 947958
Number of successful extensions: 2972
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2958
Number of HSP's successfully gapped: 5
Length of query: 332
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,273,310
Effective search space: 3268587990
Effective search space used: 3268587990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 391 e-109
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 161 1e-39
Alignment gi|XP_544450.2| PREDICTED: similar to Lysosomal-associated mult... 51 2e-06
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris].
Length = 233
Score = 391 bits (1004), Expect = e-109
Identities = 193/221 (87%), Positives = 194/221 (87%)
Frame = +3
Query: 168 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 347
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 348 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 527
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 528 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 707
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 708 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTL*MAVKM 830
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPT MAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris].
Length = 393
Score = 161 bits (407), Expect = 1e-39
Identities = 80/197 (40%), Positives = 113/197 (57%), Gaps = 8/197 (4%)
Frame = +3
Query: 204 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 383
RFYS+ CC CCHVRTG I+LG WY+++N ++ ++L + P+ QY ++ S
Sbjct: 176 RFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALADPD-------QY----HFSS 224
Query: 384 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 542
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 225 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTL 284
Query: 543 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 719
VA++ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 285 VAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTFKGYLISCVW 344
Query: 720 NCYKYINNRNMPEIAVY 770
NCY+YIN RN ++ VY
Sbjct: 345 NCYRYINGRNSSDVLVY 361
>ref|XP_544450.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) (HA1520)
[Canis familiaris].
Length = 262
Score = 50.8 bits (120), Expect = 2e-06
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +3
Query: 225 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV-NIQYEVIGNYYSSERMAD 401
C C +VR T L +++++++L+ VEV H + V Y + N SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFTEHLVEVVHGKASCKVWRTGYLRLANLISS----- 66
Query: 402 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIK 581
F + +++F+IS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 -----FLLIIMLFVISLSLLIGVVKNREKYLLPFLSLQIMDFLLCLLTLLGSYIELPAYL 121
Query: 582 EYLDQLPDFPYK 617
++ + P K
Sbjct: 122 KFASRSSRGPSK 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,690,407
Number of extensions: 968720
Number of successful extensions: 3124
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3116
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,440,896
Effective search space: 3535965184
Effective search space used: 3535965184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055528.1| lysosomal-associated transmembrane protein 4A [... 387 e-107
Alignment gi|NP_060877.3| lysosomal-associated transmembrane protein 4B [... 164 9e-41
Alignment gi|NP_006753.1| lysosomal-associated transmembrane protein 5 [H... 50 2e-06
>ref|NP_055528.1| lysosomal-associated transmembrane protein 4A [Homo sapiens].
Length = 233
Score = 387 bits (993), Expect = e-107
Identities = 190/221 (85%), Positives = 194/221 (87%)
Frame = +3
Query: 168 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 347
MVSM+FKR+RSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 348 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 527
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 528 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 707
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 708 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTL*MAVKM 830
NCVWNCYKYINNRN+PEIAVYPAFEAPPQYVLPT MAVKM
Sbjct: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_060877.3| lysosomal-associated transmembrane protein 4B [Homo sapiens].
Length = 317
Score = 164 bits (416), Expect = 9e-41
Identities = 83/197 (42%), Positives = 113/197 (57%), Gaps = 8/197 (4%)
Frame = +3
Query: 204 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 383
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ QY N+ S
Sbjct: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148
Query: 384 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 542
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208
Query: 543 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 719
VAI+ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268
Query: 720 NCYKYINNRNMPEIAVY 770
NCY+YIN RN ++ VY
Sbjct: 269 NCYRYINGRNSSDVLVY 285
>ref|NP_006753.1| lysosomal-associated transmembrane protein 5 [Homo sapiens].
Length = 262
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 225 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 401
C C +VR T L +++++++L+ I +VEV H S + Y I + SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----- 66
Query: 402 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 572
F + ++FIIS L+ G + + +L+PF ++ D++L L + S LP
Sbjct: 67 -----FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELP 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,106,524
Number of extensions: 954462
Number of successful extensions: 2912
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2900
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,901,872
Effective search space: 3412528688
Effective search space used: 3412528688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032666.2| lysosomal-associated transmembrane protein 4A [... 427 e-120
Alignment gi|NP_277056.1| lysosomal-associated transmembrane protein 4B [... 163 2e-40
Alignment gi|NP_034816.1| lysosomal-associated transmembrane protein 5 [M... 51 1e-06
>ref|NP_032666.2| lysosomal-associated transmembrane protein 4A [Mus musculus].
Length = 308
Score = 427 bits (1099), Expect = e-120
Identities = 212/258 (82%), Positives = 217/258 (84%)
Frame = +3
Query: 57 EDASFGFGRFERAVWYQPLGGRRLSGARPRTRPTSFPMVSMTFKRSRSDRFYSTRCCGCC 236
EDASFG G R VW +PLG + LSGA RTRP F MVSMTFKRSRSDRFYSTRCCGCC
Sbjct: 39 EDASFGCGHRRRVVWVEPLGRKLLSGAWARTRPARFRMVSMTFKRSRSDRFYSTRCCGCC 98
Query: 237 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADNACVL 416
HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAVNIQYEVIGNYYSSERMADNACVL
Sbjct: 99 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVL 158
Query: 417 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 596
FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ
Sbjct: 159 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 218
Query: 597 LPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPA 776
LPDFPYK KAYLINCVWNCYKYINNRN+PEIAVYPA
Sbjct: 219 LPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAVYPA 278
Query: 777 FEAPPQYVLPTL*MAVKM 830
FE PPQYVLPT MAVK+
Sbjct: 279 FETPPQYVLPTYEMAVKI 296
>ref|NP_277056.1| lysosomal-associated transmembrane protein 4B [Mus musculus].
Length = 227
Score = 163 bits (412), Expect = 2e-40
Identities = 82/193 (42%), Positives = 110/193 (56%), Gaps = 4/193 (2%)
Frame = +3
Query: 204 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 383
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + PN QY G+
Sbjct: 9 RFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPN-------QYHFSGSELG 61
Query: 384 SER--MAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 554
E M D N C+ A+S+LM +I +M YGA W+IPFFCY++FDF L+ LVAI+
Sbjct: 62 GEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAIT 121
Query: 555 SLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYK 731
L Y I+EY+ QL P FPY+ K YLI+CVW+CY+
Sbjct: 122 VLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYR 181
Query: 732 YINNRNMPEIAVY 770
YIN RN ++ VY
Sbjct: 182 YINGRNSSDVLVY 194
>ref|NP_034816.1| lysosomal-associated transmembrane protein 5 [Mus musculus].
Length = 261
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +3
Query: 225 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 401
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 402 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 572
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,625,274
Number of extensions: 809083
Number of successful extensions: 2477
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2464
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,553,887
Effective search space: 2887394010
Effective search space used: 2887394010
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125385.1| PREDICTED: lysosomal-associated transmembran... 392 e-109
Alignment gi|XP_003356310.1| PREDICTED: lysosomal-associated transmembran... 52 7e-07
>ref|XP_003125385.1| PREDICTED: lysosomal-associated transmembrane protein 4A-like [Sus
scrofa].
Length = 233
Score = 392 bits (1007), Expect = e-109
Identities = 194/221 (87%), Positives = 194/221 (87%)
Frame = +3
Query: 168 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 347
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 60
Query: 348 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 527
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 528 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 707
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 708 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTL*MAVKM 830
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPT MAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_003356310.1| PREDICTED: lysosomal-associated transmembrane protein 5-like [Sus
scrofa].
Length = 264
Score = 51.6 bits (122), Expect = 7e-07
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = +3
Query: 198 SDRFYSTR--CCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIG 371
S R +TR CC C +VR T L +++++++L+ I +VEV H + + ++ G
Sbjct: 2 STRTAATRQTCC-CFNVRIATTALAVYHVIMSVLLFIEHSVEVAHGKA----SCKFSKSG 56
Query: 372 NYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAI 551
+E ++ F + ++F+IS L+ G + + +L+PF ++ DF+L L +
Sbjct: 57 YLRIAELISS-----FLLITMLFVISLSLLIGVVKNRERYLLPFLSLQIMDFLLCLLTLL 111
Query: 552 SSLTYLP 572
S LP
Sbjct: 112 GSYIELP 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,271,885
Number of extensions: 605743
Number of successful extensions: 1949
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1941
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,879,129
Effective search space: 2068837057
Effective search space used: 2068837057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002135
(998 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 555 e-155
Sscrofa_Chr15 90 3e-15
Sscrofa_Chr01 68 1e-08
>Sscrofa_Chr03
|| Length = 144787322
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Plus
Query: 1 tactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggcttgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064142 tactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggcttgaag 126064201
Query: 61 acgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgggcggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064202 acgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgggcggaa 126064261
Query: 121 ggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgtccatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064262 ggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgtccatga 126064321
Query: 181 ctttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgttgccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064322 ctttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgttgccatg 126064381
Query: 241 tccgcaccgggacgatcatcctggggacctggtacatggt 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064382 tccgcaccgggacgatcatcctggggacctggtacatggt 126064421
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Plus
Query: 1 tactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggcttgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183409 tactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggcttgaag 126183468
Query: 61 acgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgggcggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183469 acgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgggcggaa 126183528
Query: 121 ggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgtccatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183529 ggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgtccatga 126183588
Query: 181 ctttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgttgccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183589 ctttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgttgccatg 126183648
Query: 241 tccgcaccgggacgatcatcctggggacctggtacatggt 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183649 tccgcaccgggacgatcatcctggggacctggtacatggt 126183688
Score = 331 bits (167), Expect = 4e-88
Identities = 203/210 (96%), Gaps = 5/210 (2%)
Strand = Plus / Plus
Query: 792 cagtatgttttgccaaccctatgaa-tggcagtgaagatgcctgagaaagaacccccgcc 850
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 126200539 cagtatgttttgccaacc-tatgaaatggcagtgaagatgcctgagaaagaacccccgcc 126200597
Query: 851 tccttacatacctgcctgaagaaatgctgccttttgtcat--aaccctataccagctttt 908
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 126200598 tccttacatacctgcctgaagaaatgctgccttt-gtcaataaaccctataccagctttt 126200656
Query: 909 cgtcttgtttattttacagaatgctgcaatacagggctcttcaaacctgtttgatataaa 968
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 126200657 cgtcttgtttattttacagaatgctgcaatacagggctcttcaaacttgtttgatataaa 126200716
Query: 969 gtacattttactttaagcatttattttcaa 998
||||||||||||||||||||||||||||||
Sbjct: 126200717 gtacattttactttaagcatttattttcaa 126200746
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 477 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073814 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 126073873
Query: 537 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073874 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 126073933
Query: 597 tta 599
|||
Sbjct: 126073934 tta 126073936
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 477 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195617 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 126195676
Query: 537 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195677 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 126195736
Query: 597 tta 599
|||
Sbjct: 126195737 tta 126195739
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 278 ggtggtcaacctgttgatggcaattttgctgactgttgaggtgacacatccaaactcagt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126191627 ggtggtcaacctgttgatggcaattttgctgactgttgaggtgacacatccaaactcagt 126191686
Query: 338 gccagctgtcaacattcagtatgaagtcattggcaattactattcatctgagagaatggc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126191687 gccagctgtcaacattcagtatgaagtcattggcaattactattcatctgagagaatggc 126191746
Query: 398 ag 399
||
Sbjct: 126191747 ag 126191748
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 694 aggcttatctaatcaactgtgtttggaactgttacaaatacatcaacaacagaaacatgc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126199157 aggcttatctaatcaactgtgtttggaactgttacaaatacatcaacaacagaaacatgc 126199216
Query: 754 cagagattgctgtgtatcctgcctttgaagcacctccacag 794
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 126199217 cagagattgctgtgtatcctgcctttgaagcacctccacag 126199257
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 600 cctgatttcccctataaagacgacctcctggcattggactccagctgcctcctgttcatt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126198381 cctgatttcccctataaagacgacctcctggcattggactccagctgcctcctgttcatt 126198440
Query: 660 gttcttgtgttctttgccttgttcatcatttttaagg 696
|||||||||||||||||||||||||||||||||||||
Sbjct: 126198441 gttcttgtgttctttgccttgttcatcatttttaagg 126198477
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 398 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073629 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 126073688
Query: 458 ggtttatggagcaatttct 476
|||||||||||||||||||
Sbjct: 126073689 ggtttatggagcaatttct 126073707
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 398 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195432 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 126195491
Query: 458 ggtttatggagcaatttct 476
|||||||||||||||||||
Sbjct: 126195492 ggtttatggagcaatttct 126195510
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 362 agtcattggcaattactattcatctgagagaatggcag 399
||||||||||||||||||||||||||||||||||||||
Sbjct: 126069908 agtcattggcaattactattcatctgagagaatggcag 126069945
>Sscrofa_Chr15
|| Length = 157681621
Score = 89.7 bits (45), Expect = 3e-15
Identities = 85/98 (86%), Gaps = 4/98 (4%)
Strand = Plus / Plus
Query: 905 ttttcgtcttgtttattttacagaatgctgcaatacagggctcttcaaacctgtttgata 964
||||| ||||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||
Sbjct: 22882993 ttttcatcttgtttattttgcagaatgctgtaatacagggctcttcgaacatgttggata 22883052
Query: 965 taaagtacattttac----tttaagcatttattttcaa 998
| || |||||||| | |||||||||||||||||||
Sbjct: 22883053 tcaaatacattttcctttgtttaagcatttattttcaa 22883090
>Sscrofa_Chr01
|| Length = 315321322
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 930 tgctgcaatacagggctcttcaaacctgtttgatataaagta 971
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 96345364 tgctgcaatacagggctcttcaaactcgtttgatataaagta 96345323
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,766,356
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 13
Length of query: 998
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 977
Effective length of database: 2,808,413,156
Effective search space: 2743819653412
Effective search space used: 2743819653412
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)