Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991368.1| lysosomal-associated transmembrane protein 4A [... 397 e-110
Alignment gi|NP_991371.1| lysosomal-associated transmembrane protein 4B [... 166 6e-41
Alignment gi|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 be... 123 5e-28
Alignment gi|XP_002690106.1| PREDICTED: lysosomal-associated protein tran... 122 6e-28
Alignment gi|NP_001039583.1| lysosomal-associated transmembrane protein 5... 51 3e-06
>ref|NP_991368.1| lysosomal-associated transmembrane protein 4A [Bos taurus].
Length = 233
Score = 397 bits (1021), Expect = e-110
Identities = 195/221 (88%), Positives = 196/221 (88%)
Frame = +3
Query: 174 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 353
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 354 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 533
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 534 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 713
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 714 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 836
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_991371.1| lysosomal-associated transmembrane protein 4B [Bos taurus].
Length = 226
Score = 166 bits (419), Expect = 6e-41
Identities = 87/208 (41%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Frame = +3
Query: 210 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 389
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ + E+ G++
Sbjct: 9 RFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSS--ELGGDF-- 64
Query: 390 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 566
E M D N C+ A+SVLM +I +M YGA + W+IPFFCY++FDF L+ LVA++ L
Sbjct: 65 -EFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAVTVL 123
Query: 567 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 743
Y I+EY+ QL PDFPYK K YLI+CVWNCY+YI
Sbjct: 124 VYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCYRYI 183
Query: 744 NNRNMPEIAVYPAFEAPPQYVLPTYEMA 827
N RN ++ VY +LP Y+ A
Sbjct: 184 NGRNSSDVLVY-VTSNDSTVLLPPYDDA 210
>ref|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 beta-like [Bos
taurus].
Length = 557
Score = 123 bits (308), Expect = 5e-28
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Frame = +3
Query: 210 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 389
R+ ++C C TI+LG WY++VN ++ ++L + P + E+ G++
Sbjct: 369 RYSCSQCKLLC-----TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF-- 419
Query: 390 SERMAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSL 566
E M D N C+ +S LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L
Sbjct: 420 -EFMDDANMCIAIVISFLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTIL 478
Query: 567 TYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYI 743
Y I+EY QL PD PYK K YLI+CVWNCY+Y
Sbjct: 479 VYPNSIQEYTRQLPPDIPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYT 538
Query: 744 NNRNMPEIAVY 776
RN ++ VY
Sbjct: 539 TGRNSSDVLVY 549
>ref|XP_002690106.1| PREDICTED: lysosomal-associated protein transmembrane 4B-like [Bos
taurus].
Length = 185
Score = 122 bits (307), Expect = 6e-28
Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Frame = +3
Query: 258 TIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMAD-NACVLFAVS 434
TI+LG WY++VN ++ ++L + P + E+ G++ E M D N C+ +S
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFS--RSELRGDF---EFMDDANMCIAIVIS 62
Query: 435 VLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQL-PD 611
LM +I +M YGA W+IPFFCYR+FDF L+ LV ++ L Y I+EY QL PD
Sbjct: 63 FLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPD 122
Query: 612 FPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVY 776
PYK K YLI+CVWNCY+Y RN ++ VY
Sbjct: 123 IPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVY 177
>ref|NP_001039583.1| lysosomal-associated transmembrane protein 5 [Bos taurus].
Length = 264
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/116 (26%), Positives = 60/116 (51%)
Frame = +3
Query: 231 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADN 410
C C +VR T L +++++++L+ I +VEV H + + ++ G +E ++
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKA----SCKFSKTGYLRIAELVSS- 66
Query: 411 ACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 578
F + ++FIIS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 ----FLLITMLFIISLSLLVGVVKNREKYLLPFLSLQIMDFLLCLLTLMGSYIELP 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,537,291
Number of extensions: 1293687
Number of successful extensions: 3703
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 5
Length of query: 475
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,174,046
Effective search space: 5230222974
Effective search space used: 5230222974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 397 e-110
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 161 1e-39
Alignment gi|XP_544450.2| PREDICTED: similar to Lysosomal-associated mult... 51 3e-06
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris].
Length = 233
Score = 397 bits (1021), Expect = e-110
Identities = 195/221 (88%), Positives = 196/221 (88%)
Frame = +3
Query: 174 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 353
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 354 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 533
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 534 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 713
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 714 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 836
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris].
Length = 393
Score = 161 bits (408), Expect = 1e-39
Identities = 84/214 (39%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Frame = +3
Query: 210 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 389
RFYS+ CC CCHVRTG I+LG WY+++N ++ ++L + P+ QY ++ S
Sbjct: 176 RFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALADPD-------QY----HFSS 224
Query: 390 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 548
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 225 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTL 284
Query: 549 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 725
VA++ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 285 VAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTFKGYLISCVW 344
Query: 726 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 827
NCY+YIN RN ++ VY +LP Y+ A
Sbjct: 345 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 377
>ref|XP_544450.2| PREDICTED: similar to Lysosomal-associated multitransmembrane
protein (Retinoic acid-inducible E3 protein) (HA1520)
[Canis familiaris].
Length = 262
Score = 50.8 bits (120), Expect = 3e-06
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = +3
Query: 231 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV-NIQYEVIGNYYSSERMAD 407
C C +VR T L +++++++L+ VEV H + V Y + N SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFTEHLVEVVHGKASCKVWRTGYLRLANLISS----- 66
Query: 408 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIK 587
F + +++F+IS L+ G + + +L+PF ++ DF+L L + S LP
Sbjct: 67 -----FLLIIMLFVISLSLLIGVVKNREKYLLPFLSLQIMDFLLCLLTLLGSYIELPAYL 121
Query: 588 EYLDQLPDFPYK 623
++ + P K
Sbjct: 122 KFASRSSRGPSK 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,563,622
Number of extensions: 1313040
Number of successful extensions: 3798
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3790
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 368
Effective length of database: 15,307,552
Effective search space: 5633179136
Effective search space used: 5633179136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055528.1| lysosomal-associated transmembrane protein 4A [... 393 e-109
Alignment gi|NP_060877.3| lysosomal-associated transmembrane protein 4B [... 165 1e-40
Alignment gi|NP_006753.1| lysosomal-associated transmembrane protein 5 [H... 50 4e-06
>ref|NP_055528.1| lysosomal-associated transmembrane protein 4A [Homo sapiens].
Length = 233
Score = 393 bits (1010), Expect = e-109
Identities = 192/221 (86%), Positives = 196/221 (88%)
Frame = +3
Query: 174 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 353
MVSM+FKR+RSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAV
Sbjct: 1 MVSMSFKRNRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAV 60
Query: 354 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 533
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 534 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 713
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 714 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 836
NCVWNCYKYINNRN+PEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|NP_060877.3| lysosomal-associated transmembrane protein 4B [Homo sapiens].
Length = 317
Score = 165 bits (417), Expect = 1e-40
Identities = 87/214 (40%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Frame = +3
Query: 210 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 389
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + P+ QY N+ S
Sbjct: 100 RFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPD-------QY----NFSS 148
Query: 390 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 548
SE D N C+ A+S+LM +I +M YGA + W+IPFFCY++FDF L+ L
Sbjct: 149 SELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNML 208
Query: 549 VAISSLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVW 725
VAI+ L Y I+EY+ QL P+FPY+ K YLI+CVW
Sbjct: 209 VAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVW 268
Query: 726 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMA 827
NCY+YIN RN ++ VY +LP Y+ A
Sbjct: 269 NCYRYINGRNSSDVLVY-VTSNDTTVLLPPYDDA 301
>ref|NP_006753.1| lysosomal-associated transmembrane protein 5 [Homo sapiens].
Length = 262
Score = 50.4 bits (119), Expect = 4e-06
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 231 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 407
C C +VR T L +++++++L+ I +VEV H S + Y I + SS
Sbjct: 12 CCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISS----- 66
Query: 408 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 578
F + ++FIIS L+ G + + +L+PF ++ D++L L + S LP
Sbjct: 67 -----FLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELP 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,747,241
Number of extensions: 1295048
Number of successful extensions: 3663
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3651
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 369
Effective length of database: 14,802,980
Effective search space: 5462299620
Effective search space used: 5462299620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032666.2| lysosomal-associated transmembrane protein 4A [... 434 e-122
Alignment gi|NP_277056.1| lysosomal-associated transmembrane protein 4B [... 163 3e-40
Alignment gi|NP_034816.1| lysosomal-associated transmembrane protein 5 [M... 51 2e-06
>ref|NP_032666.2| lysosomal-associated transmembrane protein 4A [Mus musculus].
Length = 308
Score = 434 bits (1116), Expect = e-122
Identities = 214/258 (82%), Positives = 219/258 (84%)
Frame = +3
Query: 63 EDASFGFGRFERAVWYQPLGGRRLSGARPRTRPTSFPMVSMTFKRSRSDRFYSTRCCGCC 242
EDASFG G R VW +PLG + LSGA RTRP F MVSMTFKRSRSDRFYSTRCCGCC
Sbjct: 39 EDASFGCGHRRRVVWVEPLGRKLLSGAWARTRPARFRMVSMTFKRSRSDRFYSTRCCGCC 98
Query: 243 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYSSERMADNACVL 422
HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNS+PAVNIQYEVIGNYYSSERMADNACVL
Sbjct: 99 HVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYSSERMADNACVL 158
Query: 423 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 602
FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ
Sbjct: 159 FAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQ 218
Query: 603 LPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYKYINNRNMPEIAVYPA 782
LPDFPYK KAYLINCVWNCYKYINNRN+PEIAVYPA
Sbjct: 219 LPDFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVWNCYKYINNRNVPEIAVYPA 278
Query: 783 FEAPPQYVLPTYEMAVKM 836
FE PPQYVLPTYEMAVK+
Sbjct: 279 FETPPQYVLPTYEMAVKI 296
>ref|NP_277056.1| lysosomal-associated transmembrane protein 4B [Mus musculus].
Length = 227
Score = 163 bits (413), Expect = 3e-40
Identities = 86/210 (40%), Positives = 116/210 (55%), Gaps = 4/210 (1%)
Frame = +3
Query: 210 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 389
RFYS CC CCHVRTGTI+LG WY+++N ++ ++L + PN QY G+
Sbjct: 9 RFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPN-------QYHFSGSELG 61
Query: 390 SER--MAD-NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAIS 560
E M D N C+ A+S+LM +I +M YGA W+IPFFCY++FDF L+ LVAI+
Sbjct: 62 GEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAIT 121
Query: 561 SLTYLPRIKEYLDQL-PDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLINCVWNCYK 737
L Y I+EY+ QL P FPY+ K YLI+CVW+CY+
Sbjct: 122 VLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCYR 181
Query: 738 YINNRNMPEIAVYPAFEAPPQYVLPTYEMA 827
YIN RN ++ VY +LP Y+ A
Sbjct: 182 YINGRNSSDVLVY-VTSNDTTVLLPPYDDA 210
>ref|NP_034816.1| lysosomal-associated transmembrane protein 5 [Mus musculus].
Length = 261
Score = 51.2 bits (121), Expect = 2e-06
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +3
Query: 231 CGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPN-SVPAVNIQYEVIGNYYSSERMAD 407
C C ++R TI L +++V+++L+ I VEV S + Y RMAD
Sbjct: 12 CCCFNIRVATIALAIYHIVMSVLLFIEHVVEVARGKVSCRFFKMPYL---------RMAD 62
Query: 408 NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLP 578
+ VL FIIS L++G + + +LIPF ++ DF+L L + S LP
Sbjct: 63 LLSSFLLIGVL-FIISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELP 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,197,166
Number of extensions: 1103158
Number of successful extensions: 3201
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3188
Number of HSP's successfully gapped: 3
Length of query: 475
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 370
Effective length of database: 12,463,779
Effective search space: 4611598230
Effective search space used: 4611598230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125385.1| PREDICTED: lysosomal-associated transmembran... 399 e-111
Alignment gi|XP_003356310.1| PREDICTED: lysosomal-associated transmembran... 52 1e-06
>ref|XP_003125385.1| PREDICTED: lysosomal-associated transmembrane protein 4A-like [Sus
scrofa].
Length = 233
Score = 399 bits (1024), Expect = e-111
Identities = 196/221 (88%), Positives = 196/221 (88%)
Frame = +3
Query: 174 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 353
MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV
Sbjct: 1 MVSMTFKRSRSDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAV 60
Query: 354 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 533
NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF
Sbjct: 61 NIQYEVIGNYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDF 120
Query: 534 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKXXXXXXXXXXXXXXXXXXXXXXXXXKAYLI 713
VLSCLVAISSLTYLPRIKEYLDQLPDFPYK KAYLI
Sbjct: 121 VLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLI 180
Query: 714 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 836
NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM
Sbjct: 181 NCVWNCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKM 221
>ref|XP_003356310.1| PREDICTED: lysosomal-associated transmembrane protein 5-like [Sus
scrofa].
Length = 264
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = +3
Query: 204 SDRFYSTR--CCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIG 377
S R +TR CC C +VR T L +++++++L+ I +VEV H + + ++ G
Sbjct: 2 STRTAATRQTCC-CFNVRIATTALAVYHVIMSVLLFIEHSVEVAHGKA----SCKFSKSG 56
Query: 378 NYYSSERMADNACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAI 557
+E ++ F + ++F+IS L+ G + + +L+PF ++ DF+L L +
Sbjct: 57 YLRIAELISS-----FLLITMLFVISLSLLIGVVKNRERYLLPFLSLQIMDFLLCLLTLL 111
Query: 558 SSLTYLP 578
S LP
Sbjct: 112 GSYIELP 118
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,600,082
Number of extensions: 847260
Number of successful extensions: 2459
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2450
Number of HSP's successfully gapped: 2
Length of query: 475
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 372
Effective length of database: 8,779,541
Effective search space: 3265989252
Effective search space used: 3265989252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002137
(1427 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1108 0.0
Sscrofa_Chr01 220 2e-54
Sscrofa_Chr15 113 3e-22
>Sscrofa_Chr03
|| Length = 144787322
Score = 1108 bits (559), Expect = 0.0
Identities = 594/609 (97%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 798 cagtatgttttgccaacctatgaaatggcagtgaagatgcctgagaaagaacccccgcct 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200539 cagtatgttttgccaacctatgaaatggcagtgaagatgcctgagaaagaacccccgcct 126200598
Query: 858 ccttacatacctgcctgaagaaatgctgcctttgtcaataaaccctataccagcttttcg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200599 ccttacatacctgcctgaagaaatgctgcctttgtcaataaaccctataccagcttttcg 126200658
Query: 918 tcttgtttattttacagaatgctgcaatacagggctcttcaaacttgtttgatataaagt 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200659 tcttgtttattttacagaatgctgcaatacagggctcttcaaacttgtttgatataaagt 126200718
Query: 978 acattttactttaagcatttattttcaa-cactaacaagcttgttggatatctatgaaaa 1036
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 126200719 acattttactttaagcatttattttcaaacactaacaagcttgttggatatctatgaaaa 126200778
Query: 1037 gacttttgttgttttgttcagtatattacattttaatagtttttgaagacaatctaggtt 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200779 gacttttgttgttttgttcagtatattacattttaatagtttttgaagacaatctaggtt 126200838
Query: 1097 aagagcaaaatgccattgtttgcctttgattggggggtgggaagggggcattctccacac 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200839 aagagcaaaatgccattgtttgcctttgattggggggtgggaagggggcattctccacac 126200898
Query: 1157 ataatcttttttaactttgcactttcttcatatcacagtttgtattttggttatttgctg 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200899 ataatcttttttaactttgcactttcttcatatcacagtttgtattttggttatttgctg 126200958
Query: 1217 ccctggatactttcaggaagaatgaagtaaatactcggggtgggcaagtttagtataaga 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126200959 ccctggatactttcaggaagaatgaagtaaatactcggggtgggcaagtttagtataaga 126201018
Query: 1277 tctgaagttttcagctgtgnnnnnnnnnnnnnntatactacattttatcttgactgtggg 1336
||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 126201019 tctgaagttttcagctgtgaaaaaaacaaaaaatatactacattttatcttgactgtggg 126201078
Query: 1337 tgatgatggttgcatgtttctaatttgtacgtgtttccatctttgtgataagatgcttta 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126201079 tgatgatggttgcatgtttctaatttgtacgtgtttccatctttgtgataagatgcttta 126201138
Query: 1397 ataaatctc 1405
|||||||||
Sbjct: 126201139 ataaatctc 126201147
Score = 567 bits (286), Expect = e-159
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 1 gctcggtactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064136 gctcggtactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggc 126064195
Query: 61 ttgaagacgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064196 ttgaagacgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgg 126064255
Query: 121 gcggaaggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064256 gcggaaggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgt 126064315
Query: 181 ccatgactttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064316 ccatgactttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgtt 126064375
Query: 241 gccatgtccgcaccgggacgatcatcctggggacctggtacatggt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126064376 gccatgtccgcaccgggacgatcatcctggggacctggtacatggt 126064421
Score = 567 bits (286), Expect = e-159
Identities = 286/286 (100%)
Strand = Plus / Plus
Query: 1 gctcggtactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183403 gctcggtactcagtgcgcaggtgcgaagcctcttggctggggccctggccgggggctggc 126183462
Query: 61 ttgaagacgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183463 ttgaagacgcgtcgtttggttttggacgctttgagagagccgtctggtatcaaccgctgg 126183522
Query: 121 gcggaaggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183523 gcggaaggcgtttgtcaggggcccggccacgaacgaggcccacgagtttcccgatggtgt 126183582
Query: 181 ccatgactttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183583 ccatgactttcaagcggagccgcagcgaccggttctacagcacccggtgctgcggctgtt 126183642
Query: 241 gccatgtccgcaccgggacgatcatcctggggacctggtacatggt 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126183643 gccatgtccgcaccgggacgatcatcctggggacctggtacatggt 126183688
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 483 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073814 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 126073873
Query: 543 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073874 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 126073933
Query: 603 tta 605
|||
Sbjct: 126073934 tta 126073936
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 483 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195617 tatcaagtgggttggttgattccattcttctgttaccggctttttgacttcgttctcagc 126195676
Query: 543 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195677 tgcctggttgctatcagttctctaacttacttgccaagaatcaaagaatatctggatcaa 126195736
Query: 603 tta 605
|||
Sbjct: 126195737 tta 126195739
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 284 ggtggtcaacctgttgatggcaattttgctgactgttgaggtgacacatccaaactcagt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126191627 ggtggtcaacctgttgatggcaattttgctgactgttgaggtgacacatccaaactcagt 126191686
Query: 344 gccagctgtcaacattcagtatgaagtcattggcaattactattcatctgagagaatggc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126191687 gccagctgtcaacattcagtatgaagtcattggcaattactattcatctgagagaatggc 126191746
Query: 404 ag 405
||
Sbjct: 126191747 ag 126191748
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 700 aggcttatctaatcaactgtgtttggaactgttacaaatacatcaacaacagaaacatgc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126199157 aggcttatctaatcaactgtgtttggaactgttacaaatacatcaacaacagaaacatgc 126199216
Query: 760 cagagattgctgtgtatcctgcctttgaagcacctccacag 800
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 126199217 cagagattgctgtgtatcctgcctttgaagcacctccacag 126199257
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 606 cctgatttcccctataaagacgacctcctggcattggactccagctgcctcctgttcatt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126198381 cctgatttcccctataaagacgacctcctggcattggactccagctgcctcctgttcatt 126198440
Query: 666 gttcttgtgttctttgccttgttcatcatttttaagg 702
|||||||||||||||||||||||||||||||||||||
Sbjct: 126198441 gttcttgtgttctttgccttgttcatcatttttaagg 126198477
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 404 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126073629 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 126073688
Query: 464 ggtttatggagcaatttct 482
|||||||||||||||||||
Sbjct: 126073689 ggtttatggagcaatttct 126073707
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 404 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126195432 agataatgcctgtgttctttttgcggtctctgttcttatgtttataatcagttcaatgct 126195491
Query: 464 ggtttatggagcaatttct 482
|||||||||||||||||||
Sbjct: 126195492 ggtttatggagcaatttct 126195510
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 368 agtcattggcaattactattcatctgagagaatggcag 405
||||||||||||||||||||||||||||||||||||||
Sbjct: 126069908 agtcattggcaattactattcatctgagagaatggcag 126069945
>Sscrofa_Chr01
|| Length = 315321322
Score = 220 bits (111), Expect = 2e-54
Identities = 283/343 (82%), Gaps = 5/343 (1%)
Strand = Plus / Minus
Query: 1067 ttttaatagtttttgaagacaatctaggtta----agagcaaaatgccattgtttgcctt 1122
|||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct: 96345236 ttttaatagtttttgaaggcaatctaggttaggcaagaacaaaatgccattgtttgcctt 96345177
Query: 1123 tgattggggggtgggaagggggcattctccacacataatcttttttaactttgcactttc 1182
|||||||||| |||||||||| ||||| |||||| ||| |||||||||||||||||
Sbjct: 96345176 tgattgggggatgggaaggggatgttctctacacatctccttctttaactttgcactttc 96345117
Query: 1183 ttcatatcacagtttgtattttggttatttgctgccctggatactttcaggaagaatgaa 1242
|| |||| | | |||||||| ||| ||||| ||||||||||||| |||||||||||||||
Sbjct: 96345116 tttatataatactttgtattgtgggtatttactgccctggatacattcaggaagaatgaa 96345057
Query: 1243 gtaaatactcggggtgggcaagtttagtataagatctgaagttttcagctgtgnnnnnnn 1302
|||||| || ||||| | | || |||||||||||| |||| ||||| ||||
Sbjct: 96345056 ttaaatattcagggtgagtgaattcagtataagatctaaagtcttcagttgtg-aaaaca 96344998
Query: 1303 nnnnnnntatactacattttatcttgactgtgggtgatgatggttgcatgtttctaattt 1362
|| | |||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 96344997 gaaaaaatagataacattttatctttaccgtggaggatgatggttgcatgtttctaattg 96344938
Query: 1363 gtacgtgtttccatctttgtgataagatgctttaataaatctc 1405
| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 96344937 gcatatgtttccctctttgtgataagatgctttaataaatctc 96344895
Score = 75.8 bits (38), Expect = 6e-11
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 937 tgctgcaatacagggctcttcaaacttgtttgatataaagta 978
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 96345364 tgctgcaatacagggctcttcaaactcgtttgatataaagta 96345323
>Sscrofa_Chr15
|| Length = 157681621
Score = 113 bits (57), Expect = 3e-22
Identities = 132/156 (84%), Gaps = 2/156 (1%)
Strand = Plus / Plus
Query: 1138 aagggggcattctccacacataatctttttt--aactttgcactttcttcatatcacagt 1195
|||||||||||||| | |||| |||||||| |||||||||||||||| | || | |||
Sbjct: 74436825 aagggggcattctctatacatcttctttttttaaactttgcactttctttacataatagt 74436884
Query: 1196 ttgtattttggttatttgctgccctggatactttcaggaagaatgaagtaaatactcggg 1255
||| || ||| | ||||||||||||||||||||||| ||||||||| |||||| || ||
Sbjct: 74436885 ttgcatgttgagtgtttgctgccctggatactttcagcaagaatgaattaaatattcagg 74436944
Query: 1256 gtgggcaagtttagtataagatctgaagttttcagc 1291
||| | |||| | ||||||||||||||||||||||
Sbjct: 74436945 gtgagtgagttcaatataagatctgaagttttcagc 74436980
Score = 95.6 bits (48), Expect = 6e-17
Identities = 95/109 (87%), Gaps = 5/109 (4%)
Strand = Plus / Plus
Query: 912 ttttcgtcttgtttattttacagaatgctgcaatacagggctcttcaaacttgtttgata 971
||||| ||||||||||||| |||||||||| ||||||||||||||| ||| |||| ||||
Sbjct: 22882993 ttttcatcttgtttattttgcagaatgctgtaatacagggctcttcgaacatgttggata 22883052
Query: 972 taaagtacattttac----tttaagcatttattttc-aacactaacaag 1015
| || |||||||| | ||||||||||||||||| ||||||||||||
Sbjct: 22883053 tcaaatacattttcctttgtttaagcatttattttcaaacactaacaag 22883101
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,412,267
Number of extensions: 357
Number of successful extensions: 357
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 18
Length of query: 1427
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1406
Effective length of database: 2,808,413,156
Effective search space: 3948628897336
Effective search space used: 3948628897336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)