Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_786973.1| cation-dependent mannose-6-phosphate receptor p... 518 e-147
>ref|NP_786973.1| cation-dependent mannose-6-phosphate receptor precursor [Bos taurus].
Length = 279
Score = 518 bits (1334), Expect = e-147
Identities = 252/278 (90%), Positives = 259/278 (93%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
M P+ SSWRTG +VAVR SWQ EEKTCDLVGEKGKESEKELALLKRL PLFNKS
Sbjct: 2 MSPLHSSWRTGLLLLLLFSVAVRESWQTEEKTCDLVGEKGKESEKELALLKRLTPLFNKS 61
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQ D Y Y+FRVCREAGNHSSGAGLVQINKSNGKETVVGR NET +FNGSNWIM
Sbjct: 62 FESTVGQSPDMYSYVFRVCREAGNHSSGAGLVQINKSNGKETVVGRFNETQIFNGSNWIM 121
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 713
LIYKGGDEYDNHCG+EQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC
Sbjct: 122 LIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 181
Query: 714 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 893
SPEISHLSVGSILLVT ASLVAVYIIGGFLYQRLVVGAKG+EQFPHLAFWQDLGNLVADG
Sbjct: 182 SPEISHLSVGSILLVTLASLVAVYIIGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADG 241
Query: 894 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
CDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 242 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,978,792
Number of extensions: 1486394
Number of successful extensions: 5750
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5707
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534894.1| PREDICTED: similar to Cation-dependent mannose-... 563 e-160
>ref|XP_534894.1| PREDICTED: similar to Cation-dependent mannose-6-phosphate receptor
precursor (CD Man-6-P receptor) (CD-MPR) (46 kDa mannose
6-phosphate receptor) (MPR 46) [Canis familiaris].
Length = 396
Score = 563 bits (1451), Expect = e-160
Identities = 280/335 (83%), Positives = 292/335 (87%)
Frame = +3
Query: 3 FSVPGVELSEAPWGTLALPRALGSGSAAGPLLALSPRRRQIFGRGY*ALATRFARDTMVP 182
F P + P L R G GSAAGP LA SP R++F RG ALA FARDTM P
Sbjct: 62 FRFPEWSTARRPGERWPLTRVPGPGSAAGPSLAPSPSPRRVFSRGSCALAAPFARDTMFP 121
Query: 183 VDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKSFES 362
S WRTG AVAVR SWQ EEKTCDLVGEKG+ESEKELALLKRL+PL+NKSF+S
Sbjct: 122 FFSRWRTGLLLPLLLAVAVRESWQTEEKTCDLVGEKGRESEKELALLKRLQPLYNKSFQS 181
Query: 363 TVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIMLIY 542
TVGQG DTY+YMFRVCREAGN +SGAGLVQINKSNGKETVVGRLNETH+FNGSNWIMLIY
Sbjct: 182 TVGQGPDTYIYMFRVCREAGNRTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIMLIY 241
Query: 543 KGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACSPE 722
KGGDEYDNHCG EQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACSPE
Sbjct: 242 KGGDEYDNHCGMEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACSPE 301
Query: 723 ISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADGCDF 902
SHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKG+EQFPHLAFWQDLGNLVADGCDF
Sbjct: 302 TSHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADGCDF 361
Query: 903 VCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
VCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 362 VCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 396
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,839,397
Number of extensions: 1518184
Number of successful extensions: 5695
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5666
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002346.1| cation-dependent mannose-6-phosphate receptor i... 526 e-149
Alignment gi|NP_001193953.1| cation-dependent mannose-6-phosphate recepto... 276 3e-74
Alignment gi|NP_000867.2| cation-independent mannose-6-phosphate receptor... 51 2e-06
>ref|NP_002346.1| cation-dependent mannose-6-phosphate receptor isoform 1 precursor
[Homo sapiens].
Length = 277
Score = 526 bits (1356), Expect = e-149
Identities = 256/278 (92%), Positives = 265/278 (95%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
M P S WRTG AVAVR SWQ EEKTCDLVGEKGKESEKELAL+KRLKPLFNKS
Sbjct: 1 MFPFYSCWRTGLLLLLL-AVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKS 59
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQGSDTY+Y+FRVCREAGNH+SGAGLVQINKSNGKETVVGRLNETH+FNGSNWIM
Sbjct: 60 FESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIM 119
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 713
LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC
Sbjct: 120 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 179
Query: 714 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 893
SPEISHLSVGSILLVTFASLVAVY++GGFLYQRLVVGAKG+EQFPHLAFWQDLGNLVADG
Sbjct: 180 SPEISHLSVGSILLVTFASLVAVYVVGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADG 239
Query: 894 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
CDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 240 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 277
>ref|NP_001193953.1| cation-dependent mannose-6-phosphate receptor isoform 2 precursor
[Homo sapiens].
Length = 191
Score = 276 bits (706), Expect = 3e-74
Identities = 135/153 (88%), Positives = 140/153 (91%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
M P S WRTG AVAVR SWQ EEKTCDLVGEKGKESEKELAL+KRLKPLFNKS
Sbjct: 1 MFPFYSCWRTGLLLLLL-AVAVRESWQTEEKTCDLVGEKGKESEKELALVKRLKPLFNKS 59
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQGSDTY+Y+FRVCREAGNH+SGAGLVQINKSNGKETVVGRLNETH+FNGSNWIM
Sbjct: 60 FESTVGQGSDTYIYIFRVCREAGNHTSGAGLVQINKSNGKETVVGRLNETHIFNGSNWIM 119
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLAD 632
LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLAD
Sbjct: 120 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLAD 152
Score = 90.1 bits (222), Expect = 3e-18
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = +3
Query: 882 VADGCDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
+ADGCDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 150 LADGCDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 191
>ref|NP_000867.2| cation-independent mannose-6-phosphate receptor precursor [Homo
sapiens].
Length = 2491
Score = 51.2 bits (121), Expect = 2e-06
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 4/167 (2%)
Frame = +3
Query: 258 EEKTCDLVGEKGKESEKELALLKRLKPLFNKSFESTVGQGSDTYMYMFRVCREAGN---H 428
E KTC L GE+ S L PL S + G + Y++ VC E +
Sbjct: 324 ESKTCSLSGEQQDVSID-------LTPLAQSGGSSYISDGKE-YLFYLNVCGETEIQFCN 375
Query: 429 SSGAGLVQINKSNGKET-VVGRLNETHVFNGSNWIMLIYKGGDEYDNHCGKEQRRAVVMI 605
A + Q+ KS+ + GR + + + LIY GGDE + QR +V+
Sbjct: 376 KKQAAVCQVKKSDTSQVKAAGRYHNQTLRYSDGDLTLIYFGGDECSSGF---QRMSVINF 432
Query: 606 SCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACSPEISHLSVGS 746
CN+ T ++ G+V DC Y F D+ AC E L G+
Sbjct: 433 ECNK-TAGNDGKGTPVFTGEV-DCTYFFTWDTEYACVKEKEDLLCGA 477
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,920,926
Number of extensions: 1490487
Number of successful extensions: 5448
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5417
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034879.2| cation-dependent mannose-6-phosphate receptor p... 506 e-143
>ref|NP_034879.2| cation-dependent mannose-6-phosphate receptor precursor [Mus
musculus].
Length = 278
Score = 506 bits (1303), Expect = e-143
Identities = 245/278 (88%), Positives = 256/278 (92%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
M P WRT AVAVR SWQ EEK+CDLVGEK KES+ E+ALL+RL+PLFNKS
Sbjct: 1 MFPFSGCWRTELLLLLLLAVAVRESWQIEEKSCDLVGEKDKESKNEVALLERLRPLFNKS 60
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQGSDTY Y+FRVCREA NHSSGAGLVQINKSN KETVVGR+NETH+FNGSNWIM
Sbjct: 61 FESTVGQGSDTYSYIFRVCREASNHSSGAGLVQINKSNDKETVVGRINETHIFNGSNWIM 120
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 713
LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLA NFNPVSEERGKVQDCFYLFEMDSSLAC
Sbjct: 121 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLAANFNPVSEERGKVQDCFYLFEMDSSLAC 180
Query: 714 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 893
SPE+SHLSVGSILLV FASLVAVYIIGGFLYQRLVVGAKG+EQFPHLAFWQDLGNLVADG
Sbjct: 181 SPEVSHLSVGSILLVIFASLVAVYIIGGFLYQRLVVGAKGMEQFPHLAFWQDLGNLVADG 240
Query: 894 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
CDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 241 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 278
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,274,126
Number of extensions: 1239712
Number of successful extensions: 4493
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4471
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126544.1| PREDICTED: cation-dependent mannose-6-phosph... 552 e-157
Alignment gi|XP_001927646.1| PREDICTED: cation-dependent mannose-6-phosph... 552 e-157
>ref|XP_003126544.1| PREDICTED: cation-dependent mannose-6-phosphate receptor isoform 2
[Sus scrofa].
Length = 278
Score = 552 bits (1423), Expect = e-157
Identities = 270/278 (97%), Positives = 271/278 (97%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
MVPVDSSWRTG AVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS
Sbjct: 1 MVPVDSSWRTGLPLLLLLAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 60
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM
Sbjct: 61 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 120
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 713
LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC
Sbjct: 121 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 180
Query: 714 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 893
SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG
Sbjct: 181 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 240
Query: 894 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
CDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 241 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 278
>ref|XP_001927646.1| PREDICTED: cation-dependent mannose-6-phosphate receptor isoform 1
[Sus scrofa].
Length = 278
Score = 552 bits (1423), Expect = e-157
Identities = 270/278 (97%), Positives = 271/278 (97%)
Frame = +3
Query: 174 MVPVDSSWRTGXXXXXXXAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 353
MVPVDSSWRTG AVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS
Sbjct: 1 MVPVDSSWRTGLPLLLLLAVAVRGSWQAEEKTCDLVGEKGKESEKELALLKRLKPLFNKS 60
Query: 354 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 533
FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM
Sbjct: 61 FESTVGQGSDTYMYMFRVCREAGNHSSGAGLVQINKSNGKETVVGRLNETHVFNGSNWIM 120
Query: 534 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 713
LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC
Sbjct: 121 LIYKGGDEYDNHCGKEQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLAC 180
Query: 714 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 893
SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG
Sbjct: 181 SPEISHLSVGSILLVTFASLVAVYIIGGFLYQRLVVGAKGIEQFPHLAFWQDLGNLVADG 240
Query: 894 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDEHLLPM 1007
CDFVCRSKPRNVPAAYRGVGDDQLGEESEERD+HLLPM
Sbjct: 241 CDFVCRSKPRNVPAAYRGVGDDQLGEESEERDDHLLPM 278
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,595,532
Number of extensions: 957196
Number of successful extensions: 3806
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002142
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 432 e-118
>Sscrofa_Chr05
|| Length = 111506441
Score = 432 bits (218), Expect = e-118
Identities = 246/254 (96%), Gaps = 1/254 (0%)
Strand = Plus / Minus
Query: 888 gatggttgtgactttgtgtgccgatctaaaccccgaaatgtgcctgctgcataccgtggt 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65380264 gatggttgtgactttgtgtgccgatctaaaccccgaaatgtgcctgctgcataccgtggt 65380205
Query: 948 gtgggggatgaccagctgggggaggagtcagaagaaagggatgaacatttattaccgatg 1007
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 65380204 gtgggggatgaccagctgggggaggagtcagaagaaagggatgaccatttattaccgatg 65380145
Query: 1008 tgattgcactttaaacgtccagcttcttcagcccccaaa-caaagcatcctcagccagat 1066
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65380144 tgattgcactttaaacgtccagcttcttcagcccccaaaccaaagcatcctcagccagat 65380085
Query: 1067 ttcttaagcagtctccactccagtctctcatcttacccttaaaatggcccctgctttccg 1126
|||||||||||||||||||||||||||||||||||||||||| || || | ||||||||
Sbjct: 65380084 ttcttaagcagtctccactccagtctctcatcttacccttaatattgctcttgctttcca 65380025
Query: 1127 gttggcttttggtt 1140
||| ||||||||||
Sbjct: 65380024 gtttgcttttggtt 65380011
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 173 gatggtccccgtcgacagctcctggaggactggtctgcccctgctgctgctcctggccgt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65385107 gatggtccccgtcgacagctcctggaggactggtctgcccctgctgctgctcctggccgt 65385048
Query: 233 ggcagtgagagggtcctggcaggcagaagaaaaaacatgcgacctggtgggagaaaaggg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65385047 ggcagtgagagggtcctggcaggcagaagaaaaaacatgcgacctggtgggagaaaaggg 65384988
Query: 293 taaagagtccgagaaagagttggctctactgaagaggctgaaaccactgtttaacaaaag 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65384987 taaagagtccgagaaagagttggctctactgaagaggctgaaaccactgtttaacaaaag 65384928
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 351 agctttgagagcaccgtgggccagggctcagacacgtatatgtacatgttccgggtgtgc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65384190 agctttgagagcaccgtgggccagggctcagacacgtatatgtacatgttccgggtgtgc 65384131
Query: 411 cgagaagctggcaaccacagctctggggcaggcctggtgcagatcaacaaaagtaatggg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65384130 cgagaagctggcaaccacagctctggggcaggcctggtgcagatcaacaaaagtaatggg 65384071
Query: 471 aaggagacagtagtggggagactcaacgagactcacgtcttcaatggaagtaa 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65384070 aaggagacagtagtggggagactcaacgagactcacgtcttcaatggaagtaa 65384018
Score = 331 bits (167), Expect = 5e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 7 cggttcccggagtggagctcagcgaggcgccctgggggacgctggctctgccacgagctc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65390395 cggttcccggagtggagctcagcgaggcgccctgggggacgctggctctgccacgagctc 65390336
Query: 67 tgggatcggggtctgcagccggccccttgctggctctgtctcccaggcgcaggcagatat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65390335 tgggatcggggtctgcagccggccccttgctggctctgtctcccaggcgcaggcagatat 65390276
Query: 127 tcggccggggatactgagctttggctactcgctttgcccgtgacacg 173
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65390275 tcggccggggatactgagctttggctactcgctttgcccgtgacacg 65390229
Score = 258 bits (130), Expect = 6e-66
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 629 ggacaatttcaaccctgtgtctgaggagcgaggcaaagtccaagactgtttctacctctt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65382284 ggacaatttcaaccctgtgtctgaggagcgaggcaaagtccaagactgtttctacctctt 65382225
Query: 689 tgagatggacagcagcctggcatgttccccggagatctcccacctcagcgtgggttctat 748
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 65382224 tgagatggacagcagcctggcatgttccccagagatctcccacctcagcgtgggttctat 65382165
Query: 749 cttacttgttacgt 762
||||||||||||||
Sbjct: 65382164 cttacttgttacgt 65382151
Score = 254 bits (128), Expect = 9e-65
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 761 gtttgcatcactggtcgctgtctatatcatcggggggttcctgtaccagcgactggtggt 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65380856 gtttgcatcactggtcgctgtctatatcatcggggggttcctgtaccagcgactggtggt 65380797
Query: 821 gggagccaaaggaatagagcagtttccccacttagccttctggcaggatcttggcaacct 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65380796 gggagccaaaggaatagagcagtttccccacttagccttctggcaggatcttggcaacct 65380737
Query: 881 ggtcgcag 888
||||||||
Sbjct: 65380736 ggtcgcag 65380729
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 520 gtaattggatcatgctcatctataaagggggtgatgaatatgacaatcactgtggcaagg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65382695 gtaattggatcatgctcatctataaagggggtgatgaatatgacaatcactgtggcaagg 65382636
Query: 580 agcagcgccgggcagtggtgatgatctcctgcaaccgacacaccctagcgg 630
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65382635 agcagcgccgggcagtggtgatgatctcctgcaaccgacacaccctagcgg 65382585
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,259,589
Number of extensions: 225
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 7
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)