Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035050.1| toll-interacting protein [Bos taurus]. 382 e-106
>ref|NP_001035050.1| toll-interacting protein [Bos taurus].
Length = 273
Score = 382 bits (982), Expect = e-106
Identities = 196/273 (71%), Positives = 205/273 (75%)
Frame = +3
Query: 147 MATTVSTQRGPVYLGELPQDFLRITPXXXXXXXXXXXXXXXXXXXXXXXXXVGRLSITVV 326
MATTVSTQRGPVY+GELPQDFLRITP VGRL +TVV
Sbjct: 1 MATTVSTQRGPVYIGELPQDFLRITPTQQQQQIQLDAQAAQQLQYGGALGTVGRLIVTVV 60
Query: 327 QAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 506
QAKLAKNYG+TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF
Sbjct: 61 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 120
Query: 507 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMVNLVMSYTSXXXXXX 686
DERAFSMDDRIAWTHVTIPE+LKQGKV DEWYSLSGRQGDDKEGM+NLV+SYTS
Sbjct: 121 DERAFSMDDRIAWTHVTIPEALKQGKVVDEWYSLSGRQGDDKEGMINLVLSYTSLPAAMM 180
Query: 687 XXXXXXXXXXXXYQQGVGYXXXXXXXXXXXXXXXXXXXXXXXSAQPRCSEEDLKAMQDMF 866
YQQGVGY SAQPRCSEEDLKA+QDMF
Sbjct: 181 MPPQPVVLMPTVYQQGVGYVPITGMPTVCSPGVVPVALPPAVSAQPRCSEEDLKAIQDMF 240
Query: 867 PNVDREVIRSVLEAQRGSKDAAINSLLQMGEES 965
PN+DREVIRSVLEAQRGS+DAAINSLLQMGEES
Sbjct: 241 PNMDREVIRSVLEAQRGSRDAAINSLLQMGEES 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,738,004
Number of extensions: 937084
Number of successful extensions: 6504
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6442
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540778.2| PREDICTED: similar to toll interacting protein ... 382 e-106
Alignment gi|XP_862541.1| PREDICTED: similar to toll interacting protein ... 365 e-101
>ref|XP_540778.2| PREDICTED: similar to toll interacting protein isoform 1 [Canis
familiaris].
Length = 274
Score = 382 bits (981), Expect = e-106
Identities = 199/274 (72%), Positives = 205/274 (74%), Gaps = 1/274 (0%)
Frame = +3
Query: 147 MATTVSTQRGPVYLGELPQDFLRITPXXXXXXXXXXXXXXXXXXXXXXXXXVGRLSITVV 326
MATTVSTQRGPVY+GELPQDFLRITP VGRLSITVV
Sbjct: 1 MATTVSTQRGPVYVGELPQDFLRITPTAAQQQVQLDAQAAQQLQYGGAVGTVGRLSITVV 60
Query: 327 QAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 506
QAKLAKNYG+TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF
Sbjct: 61 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 120
Query: 507 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMVNLVMSYTSXXXXXX 686
DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGM+NLVMSYTS
Sbjct: 121 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMINLVMSYTSLPATVM 180
Query: 687 XXXXXXXXXXXXYQQGVGY-XXXXXXXXXXXXXXXXXXXXXXXSAQPRCSEEDLKAMQDM 863
YQQGVGY S QPRCSEEDLKA+QDM
Sbjct: 181 MPPQPVVLMPTVYQQGVGYVPITGVPAVCSPGVVPVALPPAAVSTQPRCSEEDLKAIQDM 240
Query: 864 FPNVDREVIRSVLEAQRGSKDAAINSLLQMGEES 965
FPN+DREVIRSVLEAQRG +DAAINSLLQMGEES
Sbjct: 241 FPNMDREVIRSVLEAQRGDRDAAINSLLQMGEES 274
>ref|XP_862541.1| PREDICTED: similar to toll interacting protein isoform 2 [Canis
familiaris].
Length = 272
Score = 365 bits (938), Expect = e-101
Identities = 193/273 (70%), Positives = 199/273 (72%)
Frame = +3
Query: 147 MATTVSTQRGPVYLGELPQDFLRITPXXXXXXXXXXXXXXXXXXXXXXXXXVGRLSITVV 326
MATTVSTQRGPVY+GELPQDFLRITP VGRLSITVV
Sbjct: 1 MATTVSTQRGPVYVGELPQDFLRITPTAAQQQVQLDAQAAQQLQYGGAVGTVGRLSITVV 60
Query: 327 QAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 506
QAKLAKNYG+TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF
Sbjct: 61 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 120
Query: 507 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMVNLVMSYTSXXXXXX 686
DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGM+NLVMSYT
Sbjct: 121 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMINLVMSYT-LPTGSC 179
Query: 687 XXXXXXXXXXXXYQQGVGYXXXXXXXXXXXXXXXXXXXXXXXSAQPRCSEEDLKAMQDMF 866
G G S QPRCSEEDLKA+QDMF
Sbjct: 180 VFPTDRNFAHQMKAVGNGDVRGGVPAVCSPGVVPVALPPAAVSTQPRCSEEDLKAIQDMF 239
Query: 867 PNVDREVIRSVLEAQRGSKDAAINSLLQMGEES 965
PN+DREVIRSVLEAQRG +DAAINSLLQMGEES
Sbjct: 240 PNMDREVIRSVLEAQRGDRDAAINSLLQMGEES 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,382,584
Number of extensions: 969706
Number of successful extensions: 6929
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6862
Number of HSP's successfully gapped: 3
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061882.2| toll-interacting protein [Homo sapiens]. 371 e-103
>ref|NP_061882.2| toll-interacting protein [Homo sapiens].
Length = 274
Score = 371 bits (952), Expect = e-103
Identities = 191/273 (69%), Positives = 203/273 (74%), Gaps = 1/273 (0%)
Frame = +3
Query: 147 MATTVSTQRGPVYLGELPQDFLRITPXXXXXXXXXXXXXXXXXXXXXXXXXVGRLSITVV 326
MATTVSTQRGPVY+GELPQDFLRITP VGRL+ITVV
Sbjct: 1 MATTVSTQRGPVYIGELPQDFLRITPTQQQRQVQLDAQAAQQLQYGGAVGTVGRLNITVV 60
Query: 327 QAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 506
QAKLAKNYG+TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVI CTVPPGVDSFYLEIF
Sbjct: 61 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIHCTVPPGVDSFYLEIF 120
Query: 507 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMVNLVMSYTSXXXXXX 686
DERAFSMDDRIAWTH+TIPESL+QGKVED+WYSLSGRQGDDKEGM+NLVMSY
Sbjct: 121 DERAFSMDDRIAWTHITIPESLRQGKVEDKWYSLSGRQGDDKEGMINLVMSYALLPAAMV 180
Query: 687 XXXXXXXXXXXXYQQGVGY-XXXXXXXXXXXXXXXXXXXXXXXSAQPRCSEEDLKAMQDM 863
YQQGVGY +AQPRCSEEDLKA+QDM
Sbjct: 181 MPPQPVVLMPTVYQQGVGYVPITGMPAVCSPGMVPVALPPAAVNAQPRCSEEDLKAIQDM 240
Query: 864 FPNVDREVIRSVLEAQRGSKDAAINSLLQMGEE 962
FPN+D+EVIRSVLEAQRG+KDAAINSLLQMGEE
Sbjct: 241 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,271,573
Number of extensions: 923235
Number of successful extensions: 6032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5979
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076253.1| toll-interacting protein [Mus musculus]. 380 e-105
>ref|NP_076253.1| toll-interacting protein [Mus musculus].
Length = 274
Score = 380 bits (976), Expect = e-105
Identities = 197/274 (71%), Positives = 206/274 (75%), Gaps = 1/274 (0%)
Frame = +3
Query: 147 MATTVSTQRGPVYLGELPQDFLRITPXXXXXXXXXXXXXXXXXXXXXXXXXVGRLSITVV 326
MATTVSTQRGPVY+GELPQDFLRITP VGRLSITVV
Sbjct: 1 MATTVSTQRGPVYIGELPQDFLRITPTQQQQQIQLDAQAAQQLQYGGTVGTVGRLSITVV 60
Query: 327 QAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 506
QAKLAKNYG+TRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF
Sbjct: 61 QAKLAKNYGMTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKVIQCTVPPGVDSFYLEIF 120
Query: 507 DERAFSMDDRIAWTHVTIPESLKQGKVEDEWYSLSGRQGDDKEGMVNLVMSYTSXXXXXX 686
DERAFSMDDRIAWTH+TIPESLKQG+VEDEWYSLSGRQGDDKEGM+NLVMSYTS
Sbjct: 121 DERAFSMDDRIAWTHITIPESLKQGQVEDEWYSLSGRQGDDKEGMINLVMSYTSLPAAMM 180
Query: 687 XXXXXXXXXXXXYQQGVGYXXXXXXXXXXXXXXXXXXXXXXXSA-QPRCSEEDLKAMQDM 863
YQQGVGY A QPRC+EEDLKA+QDM
Sbjct: 181 MPPQPVVLMPTVYQQGVGYVPIAGMPAVCSPGMVPMAMPPPAVAPQPRCNEEDLKAIQDM 240
Query: 864 FPNVDREVIRSVLEAQRGSKDAAINSLLQMGEES 965
FPN+DREVIRSVLEAQRG+KDAAINSLLQMGEES
Sbjct: 241 FPNMDREVIRSVLEAQRGNKDAAINSLLQMGEES 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,020,862
Number of extensions: 752875
Number of successful extensions: 4833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4758
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362209.1| PREDICTED: hypothetical protein LOC100625123... 112 5e-25
>ref|XP_003362209.1| PREDICTED: hypothetical protein LOC100625123 [Sus scrofa].
Length = 903
Score = 112 bits (279), Expect = 5e-25
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +3
Query: 300 VGRLSITVVQAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKV 455
VGRLSITVVQAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKV
Sbjct: 492 VGRLSITVVQAKLAKNYGVTRMDPYCRLRLGYAVYETPTAHNGAKNPRWNKV 543
Score = 50.8 bits (120), Expect = 1e-06
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +3
Query: 822 PRCSEEDLKAMQDMFPNVDREVIRSVLEAQRGSKD 926
P + E + DMFPNVDREVIRSVLEAQRGSKD
Sbjct: 830 PGPAAESARRSADMFPNVDREVIRSVLEAQRGSKD 864
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,451,954
Number of extensions: 610271
Number of successful extensions: 4341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4271
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002146
(1165 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896446.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 280 2e-72
>gb|GL896446.1| Sus scrofa unplaced genomic scaffold chrU_scaffold786
Length = 27070
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 327 caggccaagttggcgaagaactacggcgtgacccgcatggacccgtactgccgactgcgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21164 caggccaagttggcgaagaactacggcgtgacccgcatggacccgtactgccgactgcgc 21223
Query: 387 ctgggctacgccgtgtacgagacgcccacggcccacaacggcgccaagaacccgcgctgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21224 ctgggctacgccgtgtacgagacgcccacggcccacaacggcgccaagaacccgcgctgg 21283
Query: 447 aataaggtgatccagtgcacg 467
|||||||||||||||||||||
Sbjct: 21284 aataaggtgatccagtgcacg 21304
Score = 165 bits (83), Expect = 7e-38
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 984 tgttgcctccggcctggccgctgggcaccctccccgggagccccgtcccagcagatgccc 1043
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24267 tgttgcctccggcctggccgctggccaccctccccgggagccccgtcccagcagatgccc 24326
Query: 1044 gtgaacgcgcccccgcccctcggccgt 1070
|||||||||||||||||||||||||||
Sbjct: 24327 gtgaacgcgcccccgcccctcggccgt 24353
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 249 ctggacgcgcaggcggcacagcagctgcagttcggggggacgctgggcaccgtgggccgt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19396 ctggacgcgcaggcggcacagcagctgcagttcggggggacgctgggcaccgtgggccgt 19455
Query: 309 ctcagcatcaccgtggtgcagg 330
||||||||||||||||||||||
Sbjct: 19456 ctcagcatcaccgtggtgcagg 19477
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 849 gccatgcaggacatgttccccaacgtggaccgcgaggtgatccgctccgtgctggaggcc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24085 gccatgcaggacatgttccccaacgtggaccgcgaggtgatccgctccgtgctggaggcc 24144
Query: 909 cagcgggggagcaaggacgccg 930
||||||||||||||||||||||
Sbjct: 24145 cagcgggggagcaaggacgccg 24166
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 678 gccgtggtgatgccgcctcagcctgtggtcctgatgcccacagtgtaccagcagggggtc 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22255 gccgtggtgatgccgcctcagcctgtggtcctgatgcccacagtgtaccagcagggggtc 22314
Query: 738 ggcta 742
|||||
Sbjct: 22315 ggcta 22319
Score = 60.0 bits (30), Expect = 3e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 179 ggtgtacctcggggagctcccgcaggactt 208
||||||||||||||||||||||||||||||
Sbjct: 19176 ggtgtacctcggggagctcccgcaggactt 19205
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,586,168
Number of extensions: 111
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 6
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)