Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030381.1| protein NDRG2 [Bos taurus]. 560 e-159
Alignment gi|NP_001095466.1| protein NDRG3 [Bos taurus]. 326 3e-89
Alignment gi|NP_001069163.1| protein NDRG4 [Bos taurus]. 315 4e-86
Alignment gi|NP_001030181.1| protein NDRG1 [Bos taurus]. 313 3e-85
>ref|NP_001030381.1| protein NDRG2 [Bos taurus].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 274/301 (91%), Positives = 278/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAEL+EVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELREVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY
Sbjct: 61 YKSCFQPLFQFADMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ YVLSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS
Sbjct: 121 LNFSTIIGIGVGAGAYVLSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNII HAPNL NIELYWNSYNNRRDLNF RGGD TLK
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIIAHAPNLDNIELYWNSYNNRRDLNFVRGGDTTLK 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 101 bits (251), Expect = 2e-21
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ++ESG L SGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQSSESGTLSSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_001095466.1| protein NDRG3 [Bos taurus].
Length = 375
Score = 326 bits (835), Expect = 3e-89
Identities = 165/314 (52%), Positives = 208/314 (66%), Gaps = 13/314 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEV------AKTHSVETPYGSVTFTVYGTPKPKRPAILTY 283
M ELQ+VQ+TE KPLL + + H +ET +G V T+ G PK RP ILTY
Sbjct: 1 MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETAHGMVHVTIRGLPKGNRPVILTY 60
Query: 284 HDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMI 463
HD+GLN+KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+
Sbjct: 61 HDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEML 120
Query: 464 PCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTG 643
P +L +LN S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+G
Sbjct: 121 PPVLTHLNLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSG 180
Query: 644 LTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER- 820
LT+++ ++IL H F QEEL N +LIQ YR I N N++L+ SYN R+DL ER
Sbjct: 181 LTTNVVDIILSHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRKDLEIERP 240
Query: 821 ------GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPG 982
TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD G PQ+ QPG
Sbjct: 241 ILGQNDNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPG 300
Query: 983 KLTEGLQVLPAGHG 1024
KLTE + G G
Sbjct: 301 KLTEAFKYFLQGMG 314
Score = 49.3 bits (116), Expect = 7e-06
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPS 1160
+AFKYFLQGMGY+ S+ MTRL+RSRT S +S+ G S ++ N G S
Sbjct: 304 EAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIG-SGESAFSRSVASNQSDGTQES 358
>ref|NP_001069163.1| protein NDRG4 [Bos taurus].
Length = 340
Score = 315 bits (808), Expect = 4e-86
Identities = 157/284 (55%), Positives = 194/284 (68%), Gaps = 4/284 (1%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ETPYG + + G+PK RPAILTYHDVGLN+K CF F F DMQEI ++FV HV
Sbjct: 9 HDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHV 68
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG + GA FP GYQ+PS++QLA M+P ++Q+ F YVL+++AL P
Sbjct: 69 DAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFP 128
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
D VEGLVL+NIDPN KGW+DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR
Sbjct: 129 DLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQ 188
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNS 907
I++ N AN++L+WN YN+RRDL+ R G V TL+CPVMLVVGD AP ED VVECNS
Sbjct: 189 ISNVVNQANLQLFWNMYNSRRDLDISRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNS 248
Query: 908 KLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHGLYGLL 1039
KLDPT T+FLK PGKLTE + G G L
Sbjct: 249 KLDPTTTTFLK------------PGKLTEAFKYFLQGMGYIAYL 280
Score = 56.6 bits (135), Expect = 4e-08
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 13/63 (20%)
Frame = +3
Query: 993 KAFKYFLQGMGYMA-------------SSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQ 1133
+AFKYFLQGMGY+A S+ MTRL+RSRTASL SA S+DG+R ++ S+
Sbjct: 265 EAFKYFLQGMGYIAYLKDRRLSGGAVPSASMTRLARSRTASLTSANSVDGSRPQACTHSE 324
Query: 1134 NTE 1142
++E
Sbjct: 325 SSE 327
>ref|NP_001030181.1| protein NDRG1 [Bos taurus].
Length = 384
Score = 313 bits (801), Expect = 3e-85
Identities = 153/310 (49%), Positives = 208/310 (67%), Gaps = 11/310 (3%)
Frame = +2
Query: 128 ELQEVQITEEKPL------LPGQTPEV-AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 286
ELQ+V + E KPL + G E + +ET +GS+ T+ GTPK RP ILTYH
Sbjct: 4 ELQDVDLAEVKPLVEKGETITGLLQEFDVQEQDIETLHGSIHVTLCGTPKGNRPVILTYH 63
Query: 287 DVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 466
D+G+N+K+C+ PLF DMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P
Sbjct: 64 DIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPTGYMYPSMDQLAEMLP 123
Query: 467 CILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 646
+LQ S Y+L+R+AL++P+ VEGLVLIN++P A+GWMDWAA K++G
Sbjct: 124 GVLQQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGW 183
Query: 647 TSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER-- 820
T ++ +M++ HLF +EE+ N E++ YR+ + + N N++L+ N+YN RRDL ER
Sbjct: 184 TQALPDMVVSHLFGKEEMQNNVEVVHAYRHHVMNDMNPGNLQLFINAYNGRRDLEIERPM 243
Query: 821 --GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTE 994
VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD G PQ++QP KL E
Sbjct: 244 PGAHTVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
Query: 995 GLQVLPAGHG 1024
+ G G
Sbjct: 304 AFKYFVQGMG 313
Score = 57.4 bits (137), Expect = 3e-08
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRS 1118
+AFKYF+QGMGYM S+ MTRL RSRTAS +S S++G R RS
Sbjct: 303 EAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLEGARSRS 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,145,027
Number of extensions: 1423528
Number of successful extensions: 5334
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5326
Number of HSP's successfully gapped: 8
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863366.1| PREDICTED: similar to N-myc downstream-regulate... 560 e-159
Alignment gi|XP_863342.1| PREDICTED: similar to N-myc downstream-regulate... 560 e-159
Alignment gi|XP_851185.1| PREDICTED: similar to NDRG2 protein (Syld709613... 550 e-156
Alignment gi|XP_863287.1| PREDICTED: similar to NDRG2 protein (Syld709613... 519 e-147
Alignment gi|XP_863326.1| PREDICTED: similar to NDRG2 protein (Syld709613... 518 e-147
Alignment gi|XP_863311.1| PREDICTED: similar to NDRG2 protein (Syld709613... 507 e-144
Alignment gi|XP_863243.1| PREDICTED: similar to N-myc downstream-regulate... 410 e-114
Alignment gi|XP_853829.1| PREDICTED: similar to NDRG family member 4 [Can... 357 2e-98
Alignment gi|XP_534411.2| PREDICTED: similar to N-myc downstream-regulate... 314 1e-85
Alignment gi|XP_865665.1| PREDICTED: similar to N-myc downstream-regulate... 312 5e-85
>ref|XP_863366.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 7 [Canis familiaris].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 273/301 (90%), Positives = 278/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY
Sbjct: 61 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLN ERGG VTL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNRRDLNLERGGAVTLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|XP_863342.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 6 [Canis familiaris].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 273/301 (90%), Positives = 278/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY
Sbjct: 61 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLN ERGG VTL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNRRDLNLERGGAVTLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|XP_851185.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 1
[Canis familiaris].
Length = 371
Score = 550 bits (1417), Expect = e-156
Identities = 273/315 (86%), Positives = 278/315 (88%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDRGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLN ERGG VTL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNLERGGAVTLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|XP_863287.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 3
[Canis familiaris].
Length = 360
Score = 519 bits (1336), Expect = e-147
Identities = 262/315 (83%), Positives = 267/315 (84%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDRGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLN ERGG VTL+CPVML VVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNLERGGAVTLRCPVML-----------VVECNSKLDPTQTSFLKMADSGGQPQLTQP 289
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 290 GKLTEAFKYFLQGMG 304
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 294 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 353
Query: 1173 H 1175
H
Sbjct: 354 H 354
>ref|XP_863326.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 5
[Canis familiaris].
Length = 360
Score = 518 bits (1335), Expect = e-147
Identities = 262/315 (83%), Positives = 267/315 (84%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDRGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLN ERGG VTL+CPVMLVVGDQAPHEDAV TSFLKMADSG QPQLTQP
Sbjct: 241 RDLNLERGGAVTLRCPVMLVVGDQAPHEDAV-----------TSFLKMADSGGQPQLTQP 289
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 290 GKLTEAFKYFLQGMG 304
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 294 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 353
Query: 1173 H 1175
H
Sbjct: 354 H 354
>ref|XP_863311.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 4
[Canis familiaris].
Length = 355
Score = 507 bits (1306), Expect = e-144
Identities = 257/315 (81%), Positives = 262/315 (83%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDRGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLN ERGG VTL+CPVMLVVGDQAPHEDAV MADSG QPQLTQP
Sbjct: 241 RDLNLERGGAVTLRCPVMLVVGDQAPHEDAV----------------MADSGGQPQLTQP 284
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 285 GKLTEAFKYFLQGMG 299
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 289 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 348
Query: 1173 H 1175
H
Sbjct: 349 H 349
>ref|XP_863243.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 2 [Canis familiaris].
Length = 284
Score = 410 bits (1055), Expect = e-114
Identities = 201/228 (88%), Positives = 206/228 (90%)
Frame = +2
Query: 341 MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXX 520
MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFS+
Sbjct: 1 MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGA 60
Query: 521 XXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEEL 700
Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEEL
Sbjct: 61 GAYILSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEEL 120
Query: 701 SGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPH 880
SGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPH
Sbjct: 121 SGNSELIQKYRNIITHAPNLENIELYWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPH 180
Query: 881 EDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHG 1024
EDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G G
Sbjct: 181 EDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 228
Score = 103 bits (258), Expect = 3e-22
Identities = 52/61 (85%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ +ESG LPSGP G
Sbjct: 218 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPG 277
Query: 1173 H 1175
H
Sbjct: 278 H 278
>ref|XP_853829.1| PREDICTED: similar to NDRG family member 4 [Canis familiaris].
Length = 504
Score = 357 bits (915), Expect = 2e-98
Identities = 179/319 (56%), Positives = 219/319 (68%), Gaps = 18/319 (5%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVA--------------KTHSVETPYGSVTFTVYGTPKP 259
M LQE++ +EKPLLPGQ P K H +ETPYG + + G+PK
Sbjct: 134 MGGLQELRFPQEKPLLPGQEPPQLENSDTFLLAMDTDWKEHDIETPYGLLHVVIRGSPKG 193
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
RPAILTYHDVGLN+K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS
Sbjct: 194 NRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPS 253
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
++QLA M+P ++Q+ F YVL+++AL PD VEGLVL+NIDPN KGW+D
Sbjct: 254 MEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWID 313
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+R
Sbjct: 314 WAATKLSGLTSTLPDTVLTHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSR 373
Query: 800 RDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQ 967
RDL+ R G V TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSG PQ
Sbjct: 374 RDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQ 433
Query: 968 LTQPGKLTEGLQVLPAGHG 1024
+TQPGKLTE + G G
Sbjct: 434 VTQPGKLTEAFKYFLQGMG 452
Score = 66.6 bits (161), Expect = 4e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R ++ S+++E
Sbjct: 442 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSE 491
>ref|XP_534411.2| PREDICTED: similar to N-myc downstream-regulated gene 3 isoform a
isoform 1 [Canis familiaris].
Length = 379
Score = 314 bits (804), Expect = 1e-85
Identities = 159/297 (53%), Positives = 198/297 (66%), Gaps = 9/297 (3%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ET +G V T+ G PK RP ILTYHD+GLN+KSCF F F DMQEI Q+F HV
Sbjct: 24 HDIETTHGVVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHV 83
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG +EGAP FP GYQYP++D+LA+M+P +L +L+ S Y+LSR+AL+HP
Sbjct: 84 DAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHP 143
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++ ++IL H F QEEL N +LIQ YR
Sbjct: 144 ELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLH 203
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFER-------GGDVTLKCPVMLVVGDQAPHEDAVVE 898
I N N++L+ SYN RRDL ER TLKC +LVVGD +P +AVVE
Sbjct: 204 IAQDINQENLQLFLGSYNGRRDLEIERPLLGQNDNKSKTLKCSTLLVVGDSSPAVEAVVE 263
Query: 899 CNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHGL--YGLLLHDSPIPV 1063
CNS+L+P T+ LKMAD G PQ+ QPGKLTE + G G Y L H S PV
Sbjct: 264 CNSRLNPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMGYIPYVQLSHLSTEPV 320
>ref|XP_865665.1| PREDICTED: similar to N-myc downstream-regulated gene 3 isoform a
isoform 3 [Canis familiaris].
Length = 366
Score = 312 bits (799), Expect = 5e-85
Identities = 153/282 (54%), Positives = 192/282 (68%), Gaps = 7/282 (2%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ET +G V T+ G PK RP ILTYHD+GLN+KSCF F F DMQEI Q+F HV
Sbjct: 24 HDIETTHGVVHVTIRGLPKGNRPVILTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHV 83
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG +EGAP FP GYQYP++D+LA+M+P +L +L+ S Y+LSR+AL+HP
Sbjct: 84 DAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLTHLSLKSIIGIGVGAGAYILSRFALNHP 143
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++ ++IL H F QEEL N +LIQ YR
Sbjct: 144 ELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLH 203
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFER-------GGDVTLKCPVMLVVGDQAPHEDAVVE 898
I N N++L+ SYN RRDL ER TLKC +LVVGD +P +AVVE
Sbjct: 204 IAQDINQENLQLFLGSYNGRRDLEIERPLLGQNDNKSKTLKCSTLLVVGDSSPAVEAVVE 263
Query: 899 CNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHG 1024
CNS+L+P T+ LKMAD G PQ+ QPGKLTE + G G
Sbjct: 264 CNSRLNPINTTLLKMADCGGLPQVVQPGKLTEAFKYFLQGMG 305
Score = 49.3 bits (116), Expect = 7e-06
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPS 1160
+AFKYFLQGMGY+ S+ MTRL+RSRT S +S+ G S ++ N G S
Sbjct: 295 EAFKYFLQGMGYIPSASMTRLARSRTHSTSSSIG-SGESAFSRSVTSNQSDGTQES 349
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,330,250
Number of extensions: 1471687
Number of successful extensions: 5712
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5696
Number of HSP's successfully gapped: 22
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963835.1| protein NDRG2 isoform b [Homo sapiens]. 560 e-159
Alignment gi|NP_963832.1| protein NDRG2 isoform b [Homo sapiens]. 560 e-159
Alignment gi|NP_057334.1| protein NDRG2 isoform b [Homo sapiens]. 560 e-159
Alignment gi|NP_963294.1| protein NDRG2 isoform b [Homo sapiens]. 560 e-159
Alignment gi|NP_963834.1| protein NDRG2 isoform a [Homo sapiens]. 550 e-156
Alignment gi|NP_963833.1| protein NDRG2 isoform a [Homo sapiens]. 550 e-156
Alignment gi|NP_963831.1| protein NDRG2 isoform a [Homo sapiens]. 550 e-156
Alignment gi|NP_963293.1| protein NDRG2 isoform a [Homo sapiens]. 550 e-156
Alignment gi|NP_001123959.1| protein NDRG4 isoform 2 [Homo sapiens]. 356 2e-98
Alignment gi|NP_065198.1| protein NDRG4 isoform 1 [Homo sapiens]. 354 8e-98
>ref|NP_963835.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 271/301 (90%), Positives = 279/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC+LQY
Sbjct: 61 YKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLNFERGGD+TL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_963832.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 271/301 (90%), Positives = 279/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC+LQY
Sbjct: 61 YKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLNFERGGD+TL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_057334.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 271/301 (90%), Positives = 279/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC+LQY
Sbjct: 61 YKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLNFERGGD+TL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_963294.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 560 bits (1442), Expect = e-159
Identities = 271/301 (90%), Positives = 279/301 (92%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC+LQY
Sbjct: 61 YKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLNFERGGD+TL+
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLR 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_963834.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 550 bits (1417), Expect = e-156
Identities = 271/315 (86%), Positives = 279/315 (88%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|NP_963833.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 550 bits (1417), Expect = e-156
Identities = 271/315 (86%), Positives = 279/315 (88%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|NP_963831.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 550 bits (1417), Expect = e-156
Identities = 271/315 (86%), Positives = 279/315 (88%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|NP_963293.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 550 bits (1417), Expect = e-156
Identities = 271/315 (86%), Positives = 279/315 (88%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEAAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAILTYHDVGLNYKSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 100 bits (250), Expect = 2e-21
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAAS+DGNR RS LSQ++ESG L SGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQSSESGTLSSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|NP_001123959.1| protein NDRG4 isoform 2 [Homo sapiens].
Length = 391
Score = 356 bits (914), Expect = 2e-98
Identities = 180/320 (56%), Positives = 219/320 (68%), Gaps = 18/320 (5%)
Frame = +2
Query: 119 TMAELQEVQITEEKPLLPGQTPEVA--------------KTHSVETPYGSVTFTVYGTPK 256
TMA LQE++ EEKPLL GQ K H +ETPYG + + G+PK
Sbjct: 20 TMAGLQELRFPEEKPLLRGQDATELESSDAFLLAADTDWKEHDIETPYGLLHVVIRGSPK 79
Query: 257 PKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYP 436
RPAILTYHDVGLN+K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+P
Sbjct: 80 GNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFP 139
Query: 437 SLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWM 616
S++QLA M+P ++Q+ F YVL+++AL PD VEGLVL+NIDPN KGW+
Sbjct: 140 SMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWI 199
Query: 617 DWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNN 796
DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+
Sbjct: 200 DWAATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNS 259
Query: 797 RRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQP 964
RRDL+ R G V TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSG P
Sbjct: 260 RRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLP 319
Query: 965 QLTQPGKLTEGLQVLPAGHG 1024
Q+TQPGKLTE + G G
Sbjct: 320 QVTQPGKLTEAFKYFLQGMG 339
Score = 66.6 bits (161), Expect = 4e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R ++ S+++E
Sbjct: 329 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSE 378
>ref|NP_065198.1| protein NDRG4 isoform 1 [Homo sapiens].
Length = 371
Score = 354 bits (909), Expect = 8e-98
Identities = 179/319 (56%), Positives = 218/319 (68%), Gaps = 18/319 (5%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVA--------------KTHSVETPYGSVTFTVYGTPKP 259
MA LQE++ EEKPLL GQ K H +ETPYG + + G+PK
Sbjct: 1 MAGLQELRFPEEKPLLRGQDATELESSDAFLLAADTDWKEHDIETPYGLLHVVIRGSPKG 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
RPAILTYHDVGLN+K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS
Sbjct: 61 NRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
++QLA M+P ++Q+ F YVL+++AL PD VEGLVL+NIDPN KGW+D
Sbjct: 121 MEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWID 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+R
Sbjct: 181 WAATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSR 240
Query: 800 RDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQ 967
RDL+ R G V TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSG PQ
Sbjct: 241 RDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQ 300
Query: 968 LTQPGKLTEGLQVLPAGHG 1024
+TQPGKLTE + G G
Sbjct: 301 VTQPGKLTEAFKYFLQGMG 319
Score = 66.6 bits (161), Expect = 4e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R ++ S+++E
Sbjct: 309 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSE 358
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,312,521
Number of extensions: 1446006
Number of successful extensions: 5198
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5173
Number of HSP's successfully gapped: 36
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139431.1| protein NDRG2 isoform 2 [Mus musculus]. 554 e-158
Alignment gi|NP_038892.1| protein NDRG2 isoform 1 [Mus musculus]. 545 e-155
Alignment gi|NP_001181935.1| protein NDRG4 isoform A [Mus musculus]. 340 1e-93
Alignment gi|NP_663577.1| protein NDRG4 isoform B [Mus musculus]. 340 1e-93
Alignment gi|NP_851287.1| protein NDRG3 isoform 1 [Mus musculus]. 325 4e-89
Alignment gi|NP_038893.1| protein NDRG3 isoform 2 [Mus musculus]. 325 4e-89
Alignment gi|NP_032707.2| protein NDRG1 [Mus musculus]. 308 7e-84
>ref|NP_001139431.1| protein NDRG2 isoform 2 [Mus musculus].
Length = 357
Score = 554 bits (1428), Expect = e-158
Identities = 269/301 (89%), Positives = 276/301 (91%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPE AKTHSVETPYGSVTFTVYGTPKPKRPAI TYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLF+FGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY
Sbjct: 61 YKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI
Sbjct: 121 LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIP 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
+MILGHLFSQEELSGNSELIQKYR II HAPNL NIELYWNSYNNRRDLNFERGG+ TLK
Sbjct: 181 DMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLK 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 102 bits (254), Expect = 6e-22
Identities = 51/61 (83%), Positives = 55/61 (90%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDG+R RS LSQ++ESG LPSGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|NP_038892.1| protein NDRG2 isoform 1 [Mus musculus].
Length = 371
Score = 545 bits (1403), Expect = e-155
Identities = 269/315 (85%), Positives = 276/315 (87%), Gaps = 14/315 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAK--------------THSVETPYGSVTFTVYGTPKP 259
MAELQEVQITEEKPLLPGQTPE AK THSVETPYGSVTFTVYGTPKP
Sbjct: 1 MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKP 60
Query: 260 KRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 439
KRPAI TYHDVGLNYKSCFQPLF+FGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS
Sbjct: 61 KRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPS 120
Query: 440 LDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMD 619
LDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMD
Sbjct: 121 LDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMD 180
Query: 620 WAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNR 799
WAAHKLTGLTSSI +MILGHLFSQEELSGNSELIQKYR II HAPNL NIELYWNSYNNR
Sbjct: 181 WAAHKLTGLTSSIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNR 240
Query: 800 RDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQP 979
RDLNFERGG+ TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQP
Sbjct: 241 RDLNFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQP 300
Query: 980 GKLTEGLQVLPAGHG 1024
GKLTE + G G
Sbjct: 301 GKLTEAFKYFLQGMG 315
Score = 102 bits (254), Expect = 6e-22
Identities = 51/61 (83%), Positives = 55/61 (90%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDG+R RS LSQ++ESG LPSGP G
Sbjct: 305 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPG 364
Query: 1173 H 1175
H
Sbjct: 365 H 365
>ref|NP_001181935.1| protein NDRG4 isoform A [Mus musculus].
Length = 352
Score = 340 bits (872), Expect = 1e-93
Identities = 164/279 (58%), Positives = 203/279 (72%), Gaps = 4/279 (1%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ETPYG + + G+PK RPAILTYHDVGLN+K CF F F DMQEI ++FV HV
Sbjct: 9 HDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHV 68
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG + GA FP GYQ+PS++QLA M+P ++Q+ F YVL+++AL P
Sbjct: 69 DAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFP 128
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
D VEGLVL+NIDPN KGW+DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR
Sbjct: 129 DLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQ 188
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNS 907
I++ N AN++L+WN YN+RRDL+ R G V TL+CPVMLVVGD AP E+ VVECNS
Sbjct: 189 ISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEEGVVECNS 248
Query: 908 KLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHG 1024
KLDPT T+FLKMADSG PQ+TQPGKLTE + G G
Sbjct: 249 KLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287
Score = 56.2 bits (134), Expect = 5e-08
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 13/63 (20%)
Frame = +3
Query: 993 KAFKYFLQGMGYMA-------------SSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQ 1133
+AFKYFLQGMGY+A S+ MTRL+RSRTASL SA+S+DG+R + S
Sbjct: 277 EAFKYFLQGMGYIAHLKDRRLSGGAVPSASMTRLARSRTASLTSASSVDGSRPQPCAHSD 336
Query: 1134 NTE 1142
++E
Sbjct: 337 SSE 339
>ref|NP_663577.1| protein NDRG4 isoform B [Mus musculus].
Length = 339
Score = 340 bits (872), Expect = 1e-93
Identities = 164/279 (58%), Positives = 203/279 (72%), Gaps = 4/279 (1%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ETPYG + + G+PK RPAILTYHDVGLN+K CF F F DMQEI ++FV HV
Sbjct: 9 HDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHV 68
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG + GA FP GYQ+PS++QLA M+P ++Q+ F YVL+++AL P
Sbjct: 69 DAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFP 128
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
D VEGLVL+NIDPN KGW+DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR
Sbjct: 129 DLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVNNTELVQSYRQQ 188
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNS 907
I++ N AN++L+WN YN+RRDL+ R G V TL+CPVMLVVGD AP E+ VVECNS
Sbjct: 189 ISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEEGVVECNS 248
Query: 908 KLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHG 1024
KLDPT T+FLKMADSG PQ+TQPGKLTE + G G
Sbjct: 249 KLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287
Score = 65.1 bits (157), Expect = 1e-10
Identities = 32/50 (64%), Positives = 41/50 (82%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R + S ++E
Sbjct: 277 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQPCAHSDSSE 326
>ref|NP_851287.1| protein NDRG3 isoform 1 [Mus musculus].
Length = 388
Score = 325 bits (833), Expect = 4e-89
Identities = 167/314 (53%), Positives = 207/314 (65%), Gaps = 13/314 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEV------AKTHSVETPYGSVTFTVYGTPKPKRPAILTY 283
M ELQ+VQ+TE KPLL + + H +ETP+G V T+ G PK RP ILTY
Sbjct: 1 MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGMVHVTIRGLPKGNRPVILTY 60
Query: 284 HDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMI 463
HD+GLN+KSCF F F DMQEI Q+F HVDAPG +E AP FP GYQYP++D+LA+M+
Sbjct: 61 HDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEML 120
Query: 464 PCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTG 643
P +L +L+ S Y+LSR+AL+HP+ VEGLVLINIDP AKGW+DWAA KL+G
Sbjct: 121 PPVLTHLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSG 180
Query: 644 LTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER- 820
T++I ++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 181 FTTNIVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERP 240
Query: 821 ------GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPG 982
TLKC +LVVGD +P +AVVECNS+LDP T+ LKMAD G PQ+ QPG
Sbjct: 241 ILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPG 300
Query: 983 KLTEGLQVLPAGHG 1024
KLTE + G G
Sbjct: 301 KLTEAFKYFLQGMG 314
>ref|NP_038893.1| protein NDRG3 isoform 2 [Mus musculus].
Length = 375
Score = 325 bits (833), Expect = 4e-89
Identities = 167/314 (53%), Positives = 207/314 (65%), Gaps = 13/314 (4%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEV------AKTHSVETPYGSVTFTVYGTPKPKRPAILTY 283
M ELQ+VQ+TE KPLL + + H +ETP+G V T+ G PK RP ILTY
Sbjct: 1 MDELQDVQLTEIKPLLNDKNGTRNFQDFDCQEHDIETPHGMVHVTIRGLPKGNRPVILTY 60
Query: 284 HDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMI 463
HD+GLN+KSCF F F DMQEI Q+F HVDAPG +E AP FP GYQYP++D+LA+M+
Sbjct: 61 HDIGLNHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEML 120
Query: 464 PCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTG 643
P +L +L+ S Y+LSR+AL+HP+ VEGLVLINIDP AKGW+DWAA KL+G
Sbjct: 121 PPVLTHLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSG 180
Query: 644 LTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER- 820
T++I ++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 181 FTTNIVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERP 240
Query: 821 ------GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPG 982
TLKC +LVVGD +P +AVVECNS+LDP T+ LKMAD G PQ+ QPG
Sbjct: 241 ILGQNDNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPG 300
Query: 983 KLTEGLQVLPAGHG 1024
KLTE + G G
Sbjct: 301 KLTEAFKYFLQGMG 314
>ref|NP_032707.2| protein NDRG1 [Mus musculus].
Length = 394
Score = 308 bits (788), Expect = 7e-84
Identities = 151/310 (48%), Positives = 208/310 (67%), Gaps = 11/310 (3%)
Frame = +2
Query: 128 ELQEVQITEEKPL------LPGQTPEV-AKTHSVETPYGSVTFTVYGTPKPKRPAILTYH 286
EL +V + E KPL + G E + +ET +GS+ T+ GTPK RP ILTYH
Sbjct: 4 ELHDVDLAEVKPLVEKGESITGLLQEFDVQEQDIETLHGSLHVTLCGTPKGNRPVILTYH 63
Query: 287 DVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIP 466
D+G+N+K+C+ PLF DMQEI Q+F HVDAPG ++GAP FP+GY YPS+DQLA+M+P
Sbjct: 64 DIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVGYMYPSMDQLAEMLP 123
Query: 467 CILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGL 646
+L S Y+L+R+AL++P+ VEGLVL+N++P A+GWMDWAA K++G
Sbjct: 124 GVLHQFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKISGW 183
Query: 647 TSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER-- 820
T ++ +M++ HLF +EE+ N E++ YR I + N +N+ L+ ++YN+RRDL ER
Sbjct: 184 TQALPDMVVSHLFGKEEIHNNVEVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPM 243
Query: 821 --GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTE 994
VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD G PQ++QP KL E
Sbjct: 244 PGTHTVTLQCPALLVVGDNSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAE 303
Query: 995 GLQVLPAGHG 1024
+ G G
Sbjct: 304 AFKYFVQGMG 313
Score = 58.2 bits (139), Expect = 1e-08
Identities = 28/42 (66%), Positives = 34/42 (80%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRS 1118
+AFKYF+QGMGYM S+ MTRL RSRTAS +S S++G R RS
Sbjct: 303 EAFKYFVQGMGYMPSASMTRLMRSRTASGSSVTSLEGTRSRS 344
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,439,773
Number of extensions: 1197021
Number of successful extensions: 4091
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4077
Number of HSP's successfully gapped: 12
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072151.1| NDRG2 [Sus scrofa]. 574 e-164
Alignment gi|XP_003127009.1| PREDICTED: protein NDRG4-A-like [Sus scrofa]. 355 2e-98
Alignment gi|XP_003355839.1| PREDICTED: protein NDRG4 [Sus scrofa]. 340 7e-94
Alignment gi|XP_001927862.3| PREDICTED: protein NDRG1-like [Sus scrofa]. 308 3e-84
Alignment gi|XP_003134474.2| PREDICTED: protein NDRG3-like, partial [Sus ... 295 4e-80
Alignment gi|XP_003360030.1| PREDICTED: protein NDRG3-like [Sus scrofa]. 265 4e-71
>ref|NP_001072151.1| NDRG2 [Sus scrofa].
Length = 357
Score = 574 bits (1480), Expect = e-164
Identities = 282/301 (93%), Positives = 283/301 (94%)
Frame = +2
Query: 122 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 301
MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN
Sbjct: 1 MAELQEVQITEEKPLLPGQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLN 60
Query: 302 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 481
YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY
Sbjct: 61 YKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQY 120
Query: 482 LNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 661
LNFSS YVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS
Sbjct: 121 LNFSSIIGIGVGAGAYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIS 180
Query: 662 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 841
EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK
Sbjct: 181 EMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLK 240
Query: 842 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGH 1021
CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG QPQLTQPGKLTE + G
Sbjct: 241 CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGM 300
Query: 1022 G 1024
G
Sbjct: 301 G 301
Score = 104 bits (259), Expect = 1e-22
Identities = 52/61 (85%), Positives = 55/61 (90%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTESGNLPSGPRG 1172
+AFKYFLQGMGYMASSCMTRLSRSRTASL SAASIDGNR RS LSQ++ESG LPSGP G
Sbjct: 291 EAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQSSESGTLPSGPPG 350
Query: 1173 H 1175
H
Sbjct: 351 H 351
>ref|XP_003127009.1| PREDICTED: protein NDRG4-A-like [Sus scrofa].
Length = 425
Score = 355 bits (912), Expect = 2e-98
Identities = 180/320 (56%), Positives = 219/320 (68%), Gaps = 18/320 (5%)
Frame = +2
Query: 119 TMAELQEVQITEEKPLLPGQTPEVA--------------KTHSVETPYGSVTFTVYGTPK 256
TMA LQE++ EEKPLL GQ K H +ETPYG + + G+PK
Sbjct: 54 TMAGLQELRFPEEKPLLRGQDAAELENSDTFLLAVDTDWKEHDIETPYGLLHVVIRGSPK 113
Query: 257 PKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYP 436
RPAILTYHDVGLN+K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+P
Sbjct: 114 GNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFP 173
Query: 437 SLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWM 616
S++QLA M+P ++Q+ F YVL+++AL PD VEGLVL+NIDPN KGW+
Sbjct: 174 SMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWI 233
Query: 617 DWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNN 796
DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+
Sbjct: 234 DWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNS 293
Query: 797 RRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQP 964
RRDL+ R G V TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSG P
Sbjct: 294 RRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLP 353
Query: 965 QLTQPGKLTEGLQVLPAGHG 1024
Q+TQPGKLTE + G G
Sbjct: 354 QVTQPGKLTEAFKYFLQGMG 373
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R ++ S+++E
Sbjct: 363 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSE 412
>ref|XP_003355839.1| PREDICTED: protein NDRG4 [Sus scrofa].
Length = 339
Score = 340 bits (873), Expect = 7e-94
Identities = 165/279 (59%), Positives = 202/279 (72%), Gaps = 4/279 (1%)
Frame = +2
Query: 200 HSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHV 379
H +ETPYG + + G+PK RPAILTYHDVGLN+K CF F F DMQEI ++FV HV
Sbjct: 9 HDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITKHFVVCHV 68
Query: 380 DAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHP 559
DAPG + GA FP GYQ+PS++QLA M+P ++Q+ F YVL+++AL P
Sbjct: 69 DAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYIIGIGVGAGAYVLAKFALIFP 128
Query: 560 DTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNI 739
D VEGLVL+NIDPN KGW+DWAA KL+GLTS++ + +L HLFSQEEL N+EL+Q YR
Sbjct: 129 DLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVSNTELVQSYRQQ 188
Query: 740 ITHAPNLANIELYWNSYNNRRDLNFERGGDV----TLKCPVMLVVGDQAPHEDAVVECNS 907
I + N AN++L+WN YN+RRDL+ R G V TL+CPVMLVVGD AP ED VVECNS
Sbjct: 189 IGNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEDGVVECNS 248
Query: 908 KLDPTQTSFLKMADSGSQPQLTQPGKLTEGLQVLPAGHG 1024
KLDPT T+FLKMADSG PQ+TQPGKLTE + G G
Sbjct: 249 KLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMG 287
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/50 (64%), Positives = 43/50 (86%)
Frame = +3
Query: 993 KAFKYFLQGMGYMASSCMTRLSRSRTASLNSAASIDGNRVRSPPLSQNTE 1142
+AFKYFLQGMGYM S+ MTRL+RSRTASL SA+S+DG+R ++ S+++E
Sbjct: 277 EAFKYFLQGMGYMPSASMTRLARSRTASLTSASSVDGSRPQACTHSESSE 326
>ref|XP_001927862.3| PREDICTED: protein NDRG1-like [Sus scrofa].
Length = 390
Score = 308 bits (790), Expect = 3e-84
Identities = 156/324 (48%), Positives = 210/324 (64%), Gaps = 21/324 (6%)
Frame = +2
Query: 128 ELQEVQITEEKPLLP-GQT--------------PEVAKTHSVETPYGSVTFTVYGTPKPK 262
ELQ+V + E KPL+ G+T + +ET +GS+ T+ GTPK
Sbjct: 61 ELQDVDLAEVKPLVEKGETITGLLQEFDVQARLSVSPQEQDIETLHGSIHVTLCGTPKGN 120
Query: 263 RPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 442
RP ILTYHD+G+N+K+C+ PLF DMQEI Q+F HVDAPG ++GA FP GY YPS+
Sbjct: 121 RPVILTYHDIGMNHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSM 180
Query: 443 DQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDW 622
DQLA+M+P +L S Y+L+R+AL++P+ VEGLVLIN++P A+GWMDW
Sbjct: 181 DQLAEMLPGVLHQFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDW 240
Query: 623 AAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRR 802
AA K++G T ++ +M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RR
Sbjct: 241 AASKISGWTQALPDMVVSHLFGKEEMQNNVEVVHTYRQHIINDMNPGNLHLFINAYNSRR 300
Query: 803 DLNFER----GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQPQL 970
DL ER VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD G PQ+
Sbjct: 301 DLEIERPMPGAHTVTLQCPALLVVGDNSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQI 360
Query: 971 TQPGKLTEGLQVLPAGHGL--YGL 1036
+QP KL E + G G YGL
Sbjct: 361 SQPAKLAEAFKYFVQGMGYSEYGL 384
>ref|XP_003134474.2| PREDICTED: protein NDRG3-like, partial [Sus scrofa].
Length = 264
Score = 295 bits (754), Expect = 4e-80
Identities = 143/261 (54%), Positives = 181/261 (69%), Gaps = 7/261 (2%)
Frame = +2
Query: 263 RPAILTYHDVGLNYKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSL 442
RP I+TYHD+GLN+KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++
Sbjct: 1 RPVIMTYHDIGLNHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTM 60
Query: 443 DQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDW 622
D+LA+M+P +L +LN S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DW
Sbjct: 61 DELAEMLPSVLTHLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDW 120
Query: 623 AAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRR 802
AA KL+GLT+++ ++IL H F QEEL N +LIQ YR I N N++L+ +SYN R+
Sbjct: 121 AASKLSGLTTNVVDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRK 180
Query: 803 DLNFER-------GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGSQ 961
DL ER TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD G
Sbjct: 181 DLEIERPILGQNDNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGL 240
Query: 962 PQLTQPGKLTEGLQVLPAGHG 1024
PQ+ QPGKLTE + G G
Sbjct: 241 PQVVQPGKLTEAFKYFLQGMG 261
>ref|XP_003360030.1| PREDICTED: protein NDRG3-like [Sus scrofa].
Length = 369
Score = 265 bits (677), Expect = 4e-71
Identities = 131/261 (50%), Positives = 172/261 (65%), Gaps = 10/261 (3%)
Frame = +2
Query: 140 VQITEEKPLLP---GQTPEVAKTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKS 310
V +T+ + +P G + H +ET +G V T+ G PK RP I+TYHD+GLN+KS
Sbjct: 26 VPVTDHQGRMPTWHGPNAHLNPEHDIETTHGVVHVTIRGLPKGNRPVIMTYHDIGLNHKS 85
Query: 311 CFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNF 490
CF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L +LN
Sbjct: 86 CFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLTHLNL 145
Query: 491 SSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMI 670
S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++ ++I
Sbjct: 146 KSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNVVDII 205
Query: 671 LGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER-------GGD 829
L H F QEEL N +LIQ YR I N N++L+ +SYN R+DL ER
Sbjct: 206 LAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQNDNKS 265
Query: 830 VTLKCPVMLVVGDQAPHEDAV 892
TLKC +LVVGD +P +AV
Sbjct: 266 KTLKCSTLLVVGDNSPAVEAV 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,714,601
Number of extensions: 916904
Number of successful extensions: 3399
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3388
Number of HSP's successfully gapped: 9
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002151
(1206 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 240 1e-60
>gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffold597
Length = 70069
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 303 ataaatcctgtttccagccgctgtttcagtttggggatatgcaagaaatcattcagaact 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25017 ataaatcctgtttccagccgctgtttcagtttggggatatgcaagaaatcattcagaact 24958
Query: 363 ttgtgcgggtccatgtggatgcccctgggatggaagagggggctcccgtgttccctttgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24957 ttgtgcgggtccatgtggatgcccctgggatggaagagggggctcccgtgttccctttgg 24898
Query: 423 g 423
|
Sbjct: 24897 g 24897
Score = 218 bits (110), Expect = 5e-54
Identities = 162/178 (91%), Gaps = 1/178 (0%)
Strand = Plus / Minus
Query: 1030 tggcctcctcctgcatgactcgcctatcccggtctcgcacagcctccctgaacagcgcag 1089
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 20294 tggcctcctcctgcatgactcgcctatcccggtctcgcacagcctccctgaccagcgcag 20235
Query: 1090 cctccattgatggcaaccgggtccgctctccccccttgtcccaaaacaccgagtctggga 1149
|||||||||||||||||||| |||||||| | |||||||||| | || |||||||||||
Sbjct: 20234 cctccattgatggcaaccggtcccgctctcgcaccttgtcccagagcagcgagtctggga 20175
Query: 1150 atcttccttc-gggcccccggggccacccatggaggtccccggttgaatgacctttgt 1206
||||||||| ||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 20174 ctcttccttcagggcccccggggcacaccatggaggtctcctgttgaatgacccttgt 20117
Score = 214 bits (108), Expect = 8e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 195 agactcacagtgtggagacaccttatggctctgtcacttttactgtctatggcaccccca 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25400 agactcacagtgtggagacaccttatggctctgtcacttttactgtctatggcaccccca 25341
Query: 255 agcccaaacgcccagcgatactcacctaccatgatgtgggactcaact 302
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25340 agcccaaacgcccagcgatactcacctaccatgatgtgggactcaact 25293
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 689 caggaagagctgtctggaaattctgagttaatacaaaagtatagaaatatcattacacat 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22815 caggaagagctgtctggaaattctgagttaatacaaaagtatagaaatatcattacacat 22756
Query: 749 gcccccaacctggcaaacattgaattgtactggaacagctacaacaa 795
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22755 gcccccaacctggcaaacattgaattgtactggaacagctacaacaa 22709
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 116 gccaccatggcggagctgcaggaggtgcagatcacggaggagaaaccgctgttgccaggg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26240 gccaccatggcggagctgcaggaggtgcagatcacggaggagaaaccgctgttgccaggg 26181
Query: 176 cagacacccgaggtggccaag 196
|||||||||||||||||||||
Sbjct: 26180 cagacacccgaggtggccaag 26160
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 46 cagacccctgagccaggaggagtgagaaccctgacccctaaccccactgcgtccagccaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 cagacccctgagccaggaggagtgagaaccctgacccctaaccccactgcgtccagccaa 26987
Query: 106 taggagtccag 116
|||||||||||
Sbjct: 26986 taggagtccag 26976
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 423 gatatcagtacccgtctctggaccagcttgcagacatgatcccgtgcatcctacagtact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24717 gatatcagtacccgtctctggaccagcttgcagacatgatcccgtgcatcctacagtact 24658
Query: 483 taaa 486
||||
Sbjct: 24657 taaa 24654
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 487 tttctcctcaataattggaattggtgttggagctggagcctacgtcctctctcgatatgc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696 tttctcctcaataattggaattggtgttggagctggagcctacgtcctctctcgatatgc 23637
Query: 547 t 547
|
Sbjct: 23636 t 23636
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 633 agcttacaggcctcacctcttccatttcggagatgatccttgggcatcttttcagccagg 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23047 agcttacaggcctcacctcttccatttcggagatgatccttgggcatcttttcagccagg 22988
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 841 gtgtcctgtgatgctggtggtaggagaccaagcaccccatgaagatgcagtggt 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21344 gtgtcctgtgatgctggtggtaggagaccaagcaccccatgaagatgcagtggt 21291
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 582 tcatcaacatcgatcccaatgccaagggctggatggactgggcagcccacaag 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23293 tcatcaacatcgatcccaatgccaagggctggatggactgggcagcccacaag 23241
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 892 ggtggaatgcaactcaaaactggaccccacccagacttctttcctcaag 940
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21037 ggtggaatgcaactcaaaactggaccccacccagacttctttcctcaag 20989
Score = 95.6 bits (48), Expect = 5e-17
Identities = 55/56 (98%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 974 cagccaggcaaactgaccgaaggccttcaagtacttcctgcagggcatgggctata 1029
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 20559 cagccaggcaaactgaccga-ggccttcaagtacttcctgcagggcatgggctata 20505
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 796 ccgccgagacctgaactttgagcgcggaggtgatgtcactctcaagt 842
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21951 ccgccgagacctgaactttgagcgcggaggtgatgtcactctcaagt 21905
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 939 agatggctgactctggaagtcagccgcagctgactcag 976
||||||||||||||||| ||||||||||||||||||||
Sbjct: 20742 agatggctgactctggaggtcagccgcagctgactcag 20705
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,484,623
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 15
Length of query: 1206
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1185
Effective length of database: 2,808,413,156
Effective search space: 3327969589860
Effective search space used: 3327969589860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)