Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030381.1| protein NDRG2 [Bos taurus]. 503 e-142
Alignment gi|NP_001095466.1| protein NDRG3 [Bos taurus]. 296 3e-80
Alignment gi|NP_001069163.1| protein NDRG4 [Bos taurus]. 290 3e-78
Alignment gi|NP_001030181.1| protein NDRG1 [Bos taurus]. 290 3e-78
>ref|NP_001030381.1| protein NDRG2 [Bos taurus].
Length = 357
Score = 503 bits (1294), Expect = e-142
Identities = 254/319 (79%), Positives = 259/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFADMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ YVLSRYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCILQYLNFSTIIGIGVGAGAYVLSRYALTHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNII HAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIIAHAPNLDNIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNF RGGD TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFVRGGDTTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 339 SESGTLSSGPPGHTMEVSC 357
>ref|NP_001095466.1| protein NDRG3 [Bos taurus].
Length = 375
Score = 296 bits (759), Expect = 3e-80
Identities = 145/256 (56%), Positives = 182/256 (71%), Gaps = 7/256 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L
Sbjct: 66 NHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLT 125
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+LN S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++
Sbjct: 126 HLNLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNV 185
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ SYN R+DL ER
Sbjct: 186 VDIILSHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRKDLEIERPILGQN 245
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 246 DNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEA 305
Query: 797 FKYFLQGMGYMASSCM 844
FKYFLQGMGY+ S+ M
Sbjct: 306 FKYFLQGMGYIPSASM 321
>ref|NP_001069163.1| protein NDRG4 [Bos taurus].
Length = 340
Score = 290 bits (742), Expect = 3e-78
Identities = 144/249 (57%), Positives = 178/249 (71%), Gaps = 4/249 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 42 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 101
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 102 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 161
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I++ N AN++L+WN YN+RRDL+ R G V
Sbjct: 162 PDTVLSHLFSQEELVSNTELVQSYRQQISNVVNQANLQLFWNMYNSRRDLDISRPGTVPN 221
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLK PGKLTEAFKY
Sbjct: 222 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLK------------PGKLTEAFKY 269
Query: 806 FLQGMGYMA 832
FLQGMGY+A
Sbjct: 270 FLQGMGYIA 278
>ref|NP_001030181.1| protein NDRG1 [Bos taurus].
Length = 384
Score = 290 bits (742), Expect = 3e-78
Identities = 136/253 (53%), Positives = 183/253 (72%), Gaps = 4/253 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K+C+ PLF DMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P +LQ
Sbjct: 68 NHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPTGYMYPSMDQLAEMLPGVLQ 127
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
S Y+L+R+AL++P+ VEGLVLIN++P A+GWMDWAA K++G T ++
Sbjct: 128 QFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGWTQAL 187
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER----GG 625
+M++ HLF +EE+ N E++ YR+ + + N N++L+ N+YN RRDL ER
Sbjct: 188 PDMVVSHLFGKEEMQNNVEVVHAYRHHVMNDMNPGNLQLFINAYNGRRDLEIERPMPGAH 247
Query: 626 DVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL EAFKY
Sbjct: 248 TVTLQCPALLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKY 307
Query: 806 FLQGMGYMASSCM 844
F+QGMGYM S+ M
Sbjct: 308 FVQGMGYMPSASM 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,712,747
Number of extensions: 2253227
Number of successful extensions: 7334
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7320
Number of HSP's successfully gapped: 4
Length of query: 557
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 450
Effective length of database: 14,140,958
Effective search space: 6363431100
Effective search space used: 6363431100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863366.1| PREDICTED: similar to N-myc downstream-regulate... 506 e-143
Alignment gi|XP_863342.1| PREDICTED: similar to N-myc downstream-regulate... 506 e-143
Alignment gi|XP_851185.1| PREDICTED: similar to NDRG2 protein (Syld709613... 506 e-143
Alignment gi|XP_863243.1| PREDICTED: similar to N-myc downstream-regulate... 479 e-135
Alignment gi|XP_863287.1| PREDICTED: similar to NDRG2 protein (Syld709613... 474 e-134
Alignment gi|XP_863326.1| PREDICTED: similar to NDRG2 protein (Syld709613... 474 e-133
Alignment gi|XP_863311.1| PREDICTED: similar to NDRG2 protein (Syld709613... 463 e-130
Alignment gi|XP_853829.1| PREDICTED: similar to NDRG family member 4 [Can... 325 8e-89
Alignment gi|XP_865665.1| PREDICTED: similar to N-myc downstream-regulate... 295 7e-80
Alignment gi|XP_534411.2| PREDICTED: similar to N-myc downstream-regulate... 292 6e-79
>ref|XP_863366.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 7 [Canis familiaris].
Length = 357
Score = 506 bits (1302), Expect = e-143
Identities = 254/319 (79%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 339 SESGTLPSGPPGHTMEVSC 357
>ref|XP_863342.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 6 [Canis familiaris].
Length = 357
Score = 506 bits (1302), Expect = e-143
Identities = 254/319 (79%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 339 SESGTLPSGPPGHTMEVSC 357
>ref|XP_851185.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 1
[Canis familiaris].
Length = 371
Score = 506 bits (1302), Expect = e-143
Identities = 254/319 (79%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 292
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 293 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 352
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 353 SESGTLPSGPPGHTMEVSC 371
>ref|XP_863243.1| PREDICTED: similar to N-myc downstream-regulated gene 2 isoform b
isoform 2 [Canis familiaris].
Length = 284
Score = 479 bits (1232), Expect = e-135
Identities = 237/284 (83%), Positives = 241/284 (84%)
Frame = +2
Query: 140 MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXX 319
MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFS+
Sbjct: 1 MQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGA 60
Query: 320 XXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEEL 499
Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEEL
Sbjct: 61 GAYILSRYALTHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEEL 120
Query: 500 SGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPH 679
SGNSELIQKYRNIITHAPNL NIELYWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPH
Sbjct: 121 SGNSELIQKYRNIITHAPNLENIELYWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPH 180
Query: 680 EDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXX 859
EDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCM
Sbjct: 181 EDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSR 240
Query: 860 XXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEVSC 991
IDGN GTLPSGPPGHTMEVSC
Sbjct: 241 SRTASLTSAASIDGNRSRSRTLSQGSESGTLPSGPPGHTMEVSC 284
>ref|XP_863287.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 3
[Canis familiaris].
Length = 360
Score = 474 bits (1221), Expect = e-134
Identities = 243/319 (76%), Positives = 250/319 (78%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVML VVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNLERGGAVTLRCPVML-----------VVECNSKLDPTQTSFLKMADSG 281
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 282 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 341
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 342 SESGTLPSGPPGHTMEVSC 360
>ref|XP_863326.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 5
[Canis familiaris].
Length = 360
Score = 474 bits (1220), Expect = e-133
Identities = 243/319 (76%), Positives = 250/319 (78%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPHEDAV TSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPHEDAV-----------TSFLKMADSG 281
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 282 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 341
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 342 SESGTLPSGPPGHTMEVSC 360
>ref|XP_863311.1| PREDICTED: similar to NDRG2 protein (Syld709613 protein) isoform 4
[Canis familiaris].
Length = 355
Score = 463 bits (1191), Expect = e-130
Identities = 238/319 (74%), Positives = 245/319 (76%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFS+ Y+LSRYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALTHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLENIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLN ERGG VTL+CPVMLVVGDQAPHEDAV MADSG
Sbjct: 233 YWNSYNNRRDLNLERGGAVTLRCPVMLVVGDQAPHEDAV----------------MADSG 276
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 277 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQG 336
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 337 SESGTLPSGPPGHTMEVSC 355
>ref|XP_853829.1| PREDICTED: similar to NDRG family member 4 [Canis familiaris].
Length = 504
Score = 325 bits (833), Expect = 8e-89
Identities = 166/302 (54%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 207 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 266
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 267 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 326
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+RRDL+ R G V
Sbjct: 327 PDTVLTHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 386
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 387 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 446
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 447 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQACTHSESSEGLGQVNHTMEV 502
Query: 986 SC 991
SC
Sbjct: 503 SC 504
>ref|XP_865665.1| PREDICTED: similar to N-myc downstream-regulated gene 3 isoform a
isoform 3 [Canis familiaris].
Length = 366
Score = 295 bits (756), Expect = 7e-80
Identities = 145/256 (56%), Positives = 182/256 (71%), Gaps = 7/256 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L
Sbjct: 57 NHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLT 116
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+L+ S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++
Sbjct: 117 HLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNV 176
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 177 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPLLGQN 236
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 237 DNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGKLTEA 296
Query: 797 FKYFLQGMGYMASSCM 844
FKYFLQGMGY+ S+ M
Sbjct: 297 FKYFLQGMGYIPSASM 312
>ref|XP_534411.2| PREDICTED: similar to N-myc downstream-regulated gene 3 isoform a
isoform 1 [Canis familiaris].
Length = 379
Score = 292 bits (748), Expect = 6e-79
Identities = 143/251 (56%), Positives = 179/251 (71%), Gaps = 7/251 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L
Sbjct: 57 NHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPTGYQYPTMDELAEMLPPVLT 116
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+L+ S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++
Sbjct: 117 HLSLKSIIGIGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNV 176
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 177 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPLLGQN 236
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 237 DNKSKTLKCSTLLVVGDSSPAVEAVVECNSRLNPINTTLLKMADCGGLPQVVQPGKLTEA 296
Query: 797 FKYFLQGMGYM 829
FKYFLQGMGY+
Sbjct: 297 FKYFLQGMGYI 307
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,836,719
Number of extensions: 2326576
Number of successful extensions: 7558
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7530
Number of HSP's successfully gapped: 12
Length of query: 557
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 449
Effective length of database: 15,274,216
Effective search space: 6858122984
Effective search space used: 6858122984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963835.1| protein NDRG2 isoform b [Homo sapiens]. 502 e-142
Alignment gi|NP_963834.1| protein NDRG2 isoform a [Homo sapiens]. 502 e-142
Alignment gi|NP_963833.1| protein NDRG2 isoform a [Homo sapiens]. 502 e-142
Alignment gi|NP_963832.1| protein NDRG2 isoform b [Homo sapiens]. 502 e-142
Alignment gi|NP_963831.1| protein NDRG2 isoform a [Homo sapiens]. 502 e-142
Alignment gi|NP_057334.1| protein NDRG2 isoform b [Homo sapiens]. 502 e-142
Alignment gi|NP_963294.1| protein NDRG2 isoform b [Homo sapiens]. 502 e-142
Alignment gi|NP_963293.1| protein NDRG2 isoform a [Homo sapiens]. 502 e-142
Alignment gi|NP_001123959.1| protein NDRG4 isoform 2 [Homo sapiens]. 327 3e-89
Alignment gi|NP_065198.1| protein NDRG4 isoform 1 [Homo sapiens]. 327 3e-89
>ref|NP_963835.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 339 SESGTLSSGPPGHTMEVSC 357
>ref|NP_963834.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 292
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 293 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 352
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 353 SESGTLSSGPPGHTMEVSC 371
>ref|NP_963833.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 292
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 293 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 352
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 353 SESGTLSSGPPGHTMEVSC 371
>ref|NP_963832.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 339 SESGTLSSGPPGHTMEVSC 357
>ref|NP_963831.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 292
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 293 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 352
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 353 SESGTLSSGPPGHTMEVSC 371
>ref|NP_057334.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 339 SESGTLSSGPPGHTMEVSC 357
>ref|NP_963294.1| protein NDRG2 isoform b [Homo sapiens].
Length = 357
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 339 SESGTLSSGPPGHTMEVSC 357
>ref|NP_963293.1| protein NDRG2 isoform a [Homo sapiens].
Length = 371
Score = 502 bits (1293), Expect = e-142
Identities = 250/319 (78%), Positives = 261/319 (81%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQF DMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 57 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFEDMQEIIQNFVRVHVDAPGMEEGAPVF 112
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPC+LQYLNFS+ Y+L+RYAL+HPDTVEGLVLINID
Sbjct: 113 PLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINID 172
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSI EMILGHLFSQEELSGNSELIQKYRNIITHAPNL NIEL
Sbjct: 173 PNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNSELIQKYRNIITHAPNLDNIEL 232
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGD+TL+CPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 233 YWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 292
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM +DGN
Sbjct: 293 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASVDGNRSRSRTLSQS 352
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTL SGPPGHTMEVSC
Sbjct: 353 SESGTLSSGPPGHTMEVSC 371
>ref|NP_001123959.1| protein NDRG4 isoform 2 [Homo sapiens].
Length = 391
Score = 327 bits (837), Expect = 3e-89
Identities = 166/302 (54%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 94 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 153
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 154 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWAATKLSGLTSTL 213
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+RRDL+ R G V
Sbjct: 214 PDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 273
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 274 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 333
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 334 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQACTHSESSEGLGQVNHTMEV 389
Query: 986 SC 991
SC
Sbjct: 390 SC 391
>ref|NP_065198.1| protein NDRG4 isoform 1 [Homo sapiens].
Length = 371
Score = 327 bits (837), Expect = 3e-89
Identities = 166/302 (54%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 74 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 133
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 134 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLVNIDPNGKGWIDWAATKLSGLTSTL 193
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+RRDL+ R G V
Sbjct: 194 PDTVLSHLFSQEELVNNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 253
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 254 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 313
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 314 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQACTHSESSEGLGQVNHTMEV 369
Query: 986 SC 991
SC
Sbjct: 370 SC 371
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,378,224
Number of extensions: 2277267
Number of successful extensions: 7451
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 7410
Number of HSP's successfully gapped: 19
Length of query: 557
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 449
Effective length of database: 14,737,052
Effective search space: 6616936348
Effective search space used: 6616936348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139431.1| protein NDRG2 isoform 2 [Mus musculus]. 499 e-141
Alignment gi|NP_038892.1| protein NDRG2 isoform 1 [Mus musculus]. 499 e-141
Alignment gi|NP_663577.1| protein NDRG4 isoform B [Mus musculus]. 326 4e-89
Alignment gi|NP_001181935.1| protein NDRG4 isoform A [Mus musculus]. 317 1e-86
Alignment gi|NP_038893.1| protein NDRG3 isoform 2 [Mus musculus]. 293 4e-79
Alignment gi|NP_851287.1| protein NDRG3 isoform 1 [Mus musculus]. 290 3e-78
Alignment gi|NP_032707.2| protein NDRG1 [Mus musculus]. 288 1e-77
>ref|NP_001139431.1| protein NDRG2 isoform 2 [Mus musculus].
Length = 357
Score = 499 bits (1286), Expect = e-141
Identities = 245/296 (82%), Positives = 252/296 (85%)
Frame = +2
Query: 104 KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL 283
KSCFQPLF+FGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL
Sbjct: 62 KSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL 121
Query: 284 NFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISE 463
NFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI +
Sbjct: 122 NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPD 181
Query: 464 MILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLKC 643
MILGHLFSQEELSGNSELIQKYR II HAPNL NIELYWNSYNNRRDLNFERGG+ TLKC
Sbjct: 182 MILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKC 241
Query: 644 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 823
PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG
Sbjct: 242 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 301
Query: 824 YMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEVSC 991
YMASSCM IDG+ GTLPSGPPGHTMEVSC
Sbjct: 302 YMASSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPGHTMEVSC 357
>ref|NP_038892.1| protein NDRG2 isoform 1 [Mus musculus].
Length = 371
Score = 499 bits (1286), Expect = e-141
Identities = 245/296 (82%), Positives = 252/296 (85%)
Frame = +2
Query: 104 KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL 283
KSCFQPLF+FGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL
Sbjct: 76 KSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYL 135
Query: 284 NFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSISE 463
NFS+ Y+LSRYAL+HPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI +
Sbjct: 136 NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPD 195
Query: 464 MILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDVTLKC 643
MILGHLFSQEELSGNSELIQKYR II HAPNL NIELYWNSYNNRRDLNFERGG+ TLKC
Sbjct: 196 MILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKC 255
Query: 644 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 823
PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG
Sbjct: 256 PVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMG 315
Query: 824 YMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEVSC 991
YMASSCM IDG+ GTLPSGPPGHTMEVSC
Sbjct: 316 YMASSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPGHTMEVSC 371
>ref|NP_663577.1| protein NDRG4 isoform B [Mus musculus].
Length = 339
Score = 326 bits (835), Expect = 4e-89
Identities = 165/302 (54%), Positives = 204/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 42 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 101
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 102 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 161
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I++ N AN++L+WN YN+RRDL+ R G V
Sbjct: 162 PDTVLSHLFSQEELVNNTELVQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 221
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP E+ VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 222 AKTLRCPVMLVVGDNAPAEEGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 281
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 282 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQPCAHSDSSEGMGQVNHTMEV 337
Query: 986 SC 991
SC
Sbjct: 338 SC 339
>ref|NP_001181935.1| protein NDRG4 isoform A [Mus musculus].
Length = 352
Score = 317 bits (813), Expect = 1e-86
Identities = 153/249 (61%), Positives = 189/249 (75%), Gaps = 4/249 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 42 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 101
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 102 HFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 161
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I++ N AN++L+WN YN+RRDL+ R G V
Sbjct: 162 PDTVLSHLFSQEELVNNTELVQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 221
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP E+ VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 222 AKTLRCPVMLVVGDNAPAEEGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 281
Query: 806 FLQGMGYMA 832
FLQGMGY+A
Sbjct: 282 FLQGMGYIA 290
>ref|NP_038893.1| protein NDRG3 isoform 2 [Mus musculus].
Length = 375
Score = 293 bits (749), Expect = 4e-79
Identities = 146/256 (57%), Positives = 180/256 (70%), Gaps = 7/256 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +E AP FP GYQYP++D+LA+M+P +L
Sbjct: 66 NHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEMLPPVLT 125
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+L+ S Y+LSR+AL+HP+ VEGLVLINIDP AKGW+DWAA KL+G T++I
Sbjct: 126 HLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGFTTNI 185
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 186 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGQN 245
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+LDP T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 246 DNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEA 305
Query: 797 FKYFLQGMGYMASSCM 844
FKYFLQGMGY+ S+ M
Sbjct: 306 FKYFLQGMGYIPSASM 321
>ref|NP_851287.1| protein NDRG3 isoform 1 [Mus musculus].
Length = 388
Score = 290 bits (741), Expect = 3e-78
Identities = 144/251 (57%), Positives = 177/251 (70%), Gaps = 7/251 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +E AP FP GYQYP++D+LA+M+P +L
Sbjct: 66 NHKSCFNTFFNFEDMQEITQHFAVCHVDAPGQQEAAPSFPTGYQYPTMDELAEMLPPVLT 125
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+L+ S Y+LSR+AL+HP+ VEGLVLINIDP AKGW+DWAA KL+G T++I
Sbjct: 126 HLSMKSIIGIGVGAGAYILSRFALNHPELVEGLVLINIDPCAKGWIDWAASKLSGFTTNI 185
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ SYN RRDL ER
Sbjct: 186 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLGSYNGRRDLEIERPILGQN 245
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+LDP T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 246 DNRLKTLKCSTLLVVGDNSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPGKLTEA 305
Query: 797 FKYFLQGMGYM 829
FKYFLQGMGY+
Sbjct: 306 FKYFLQGMGYI 316
>ref|NP_032707.2| protein NDRG1 [Mus musculus].
Length = 394
Score = 288 bits (736), Expect = 1e-77
Identities = 135/253 (53%), Positives = 184/253 (72%), Gaps = 4/253 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K+C+ PLF DMQEI Q+F HVDAPG ++GAP FP+GY YPS+DQLA+M+P +L
Sbjct: 68 NHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAPSFPVGYMYPSMDQLAEMLPGVLH 127
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
S Y+L+R+AL++P+ VEGLVL+N++P A+GWMDWAA K++G T ++
Sbjct: 128 QFGLKSVIGMGTGAGAYILTRFALNNPEMVEGLVLMNVNPCAEGWMDWAASKISGWTQAL 187
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER----GG 625
+M++ HLF +EE+ N E++ YR I + N +N+ L+ ++YN+RRDL ER
Sbjct: 188 PDMVVSHLFGKEEIHNNVEVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPGTH 247
Query: 626 DVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL EAFKY
Sbjct: 248 TVTLQCPALLVVGDNSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKY 307
Query: 806 FLQGMGYMASSCM 844
F+QGMGYM S+ M
Sbjct: 308 FVQGMGYMPSASM 320
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,807,729
Number of extensions: 1883788
Number of successful extensions: 5773
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5756
Number of HSP's successfully gapped: 7
Length of query: 557
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 451
Effective length of database: 12,433,743
Effective search space: 5607618093
Effective search space used: 5607618093
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001072151.1| NDRG2 [Sus scrofa]. 519 e-147
Alignment gi|XP_003127009.1| PREDICTED: protein NDRG4-A-like [Sus scrofa]. 326 3e-89
Alignment gi|XP_003355839.1| PREDICTED: protein NDRG4 [Sus scrofa]. 326 3e-89
Alignment gi|XP_003134474.2| PREDICTED: protein NDRG3-like, partial [Sus ... 294 1e-79
Alignment gi|XP_001927862.3| PREDICTED: protein NDRG1-like [Sus scrofa]. 283 3e-76
Alignment gi|XP_003360030.1| PREDICTED: protein NDRG3-like [Sus scrofa]. 220 2e-57
>ref|NP_001072151.1| NDRG2 [Sus scrofa].
Length = 357
Score = 519 bits (1336), Expect = e-147
Identities = 262/319 (82%), Positives = 265/319 (83%)
Frame = +2
Query: 35 TPEPGGVRTLTPNPTASSQ*ESNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 214
TP+P LT + + KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF
Sbjct: 43 TPKPKRPAILTYHDVGLNY----KSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVF 98
Query: 215 PLGYQYPSLDQLADMIPCILQYLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINID 394
PLGYQYPSLDQLADMIPCILQYLNFSS YVLSRYALSHPDTVEGLVLINID
Sbjct: 99 PLGYQYPSLDQLADMIPCILQYLNFSSIIGIGVGAGAYVLSRYALSHPDTVEGLVLINID 158
Query: 395 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 574
PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL
Sbjct: 159 PNAKGWMDWAAHKLTGLTSSISEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIEL 218
Query: 575 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 754
YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG
Sbjct: 219 YWNSYNNRRDLNFERGGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSG 278
Query: 755 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXX 934
GQPQLTQPGKLTEAFKYFLQGMGYMASSCM IDGN
Sbjct: 279 GQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGNRSRSRTLSQS 338
Query: 935 XXXGTLPSGPPGHTMEVSC 991
GTLPSGPPGHTMEVSC
Sbjct: 339 SESGTLPSGPPGHTMEVSC 357
>ref|XP_003127009.1| PREDICTED: protein NDRG4-A-like [Sus scrofa].
Length = 425
Score = 326 bits (835), Expect = 3e-89
Identities = 166/302 (54%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 128 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 187
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 188 HFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 247
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+RRDL+ R G V
Sbjct: 248 PDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 307
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 308 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 367
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 368 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQACTHSESSEGLGQVNHTMEV 423
Query: 986 SC 991
SC
Sbjct: 424 SC 425
>ref|XP_003355839.1| PREDICTED: protein NDRG4 [Sus scrofa].
Length = 339
Score = 326 bits (835), Expect = 3e-89
Identities = 166/302 (54%), Positives = 203/302 (67%), Gaps = 4/302 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K CF F F DMQEI ++FV HVDAPG + GA FP GYQ+PS++QLA M+P ++Q
Sbjct: 42 NHKLCFNTFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQ 101
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+ F YVL+++AL PD VEGLVL+NIDPN KGW+DWAA KL+GLTS++
Sbjct: 102 HFGFKYIIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTL 161
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFERGGDV-- 631
+ +L HLFSQEEL N+EL+Q YR I + N AN++L+WN YN+RRDL+ R G V
Sbjct: 162 PDTVLSHLFSQEELVSNTELVQSYRQQIGNVVNQANLQLFWNMYNSRRDLDINRPGTVPN 221
Query: 632 --TLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
TL+CPVMLVVGD AP ED VVECNSKLDPT T+FLKMADSGG PQ+TQPGKLTEAFKY
Sbjct: 222 AKTLRCPVMLVVGDNAPAEDGVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKY 281
Query: 806 FLQGMGYMASSCMXXXXXXXXXXXXXXXXIDGNXXXXXXXXXXXXXGTLPSGPPGHTMEV 985
FLQGMGYM S+ M +DG+ + G HTMEV
Sbjct: 282 FLQGMGYMPSASMTRLARSRTASLTSASSVDGS----RPQACTHSESSEGLGQVNHTMEV 337
Query: 986 SC 991
SC
Sbjct: 338 SC 339
>ref|XP_003134474.2| PREDICTED: protein NDRG3-like, partial [Sus scrofa].
Length = 264
Score = 294 bits (752), Expect = 1e-79
Identities = 143/250 (57%), Positives = 179/250 (71%), Gaps = 7/250 (2%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L
Sbjct: 13 NHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLT 72
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+LN S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++
Sbjct: 73 HLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNV 132
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ +SYN R+DL ER
Sbjct: 133 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQN 192
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEA 796
TLKC +LVVGD +P +AVVECNS+L+P T+ LKMAD GG PQ+ QPGKLTEA
Sbjct: 193 DNKSKTLKCSTLLVVGDNSPAVEAVVECNSRLNPVNTTLLKMADCGGLPQVVQPGKLTEA 252
Query: 797 FKYFLQGMGY 826
FKYFLQGMGY
Sbjct: 253 FKYFLQGMGY 262
>ref|XP_001927862.3| PREDICTED: protein NDRG1-like [Sus scrofa].
Length = 390
Score = 283 bits (723), Expect = 3e-76
Identities = 133/247 (53%), Positives = 177/247 (71%), Gaps = 4/247 (1%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++K+C+ PLF DMQEI Q+F HVDAPG ++GA FP GY YPS+DQLA+M+P +L
Sbjct: 133 NHKTCYNPLFNSEDMQEITQHFAVCHVDAPGQQDGAASFPAGYMYPSMDQLAEMLPGVLH 192
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
S Y+L+R+AL++P+ VEGLVLIN++P A+GWMDWAA K++G T ++
Sbjct: 193 QFGLKSIIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKISGWTQAL 252
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER----GG 625
+M++ HLF +EE+ N E++ YR I + N N+ L+ N+YN+RRDL ER
Sbjct: 253 PDMVVSHLFGKEEMQNNVEVVHTYRQHIINDMNPGNLHLFINAYNSRRDLEIERPMPGAH 312
Query: 626 DVTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKY 805
VTL+CP +LVVGD +P DAVVECNSKLDPT+T+ LKMAD GG PQ++QP KL EAFKY
Sbjct: 313 TVTLQCPALLVVGDNSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKY 372
Query: 806 FLQGMGY 826
F+QGMGY
Sbjct: 373 FVQGMGY 379
>ref|XP_003360030.1| PREDICTED: protein NDRG3-like [Sus scrofa].
Length = 369
Score = 220 bits (560), Expect = 2e-57
Identities = 108/205 (52%), Positives = 140/205 (68%), Gaps = 7/205 (3%)
Frame = +2
Query: 98 SNKSCFQPLFQFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQ 277
++KSCF F F DMQEI Q+F HVDAPG +EGAP FP GYQYP++D+LA+M+P +L
Sbjct: 82 NHKSCFNAFFNFEDMQEITQHFAVCHVDAPGQQEGAPSFPSGYQYPTMDELAEMLPSVLT 141
Query: 278 YLNFSSXXXXXXXXXXYVLSRYALSHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSI 457
+LN S Y+LSR+AL+HP+ VEGLVLIN+DP AKGW+DWAA KL+GLT+++
Sbjct: 142 HLNLKSIIGVGVGAGAYILSRFALNHPELVEGLVLINVDPCAKGWIDWAASKLSGLTTNV 201
Query: 458 SEMILGHLFSQEELSGNSELIQKYRNIITHAPNLANIELYWNSYNNRRDLNFER------ 619
++IL H F QEEL N +LIQ YR I N N++L+ +SYN R+DL ER
Sbjct: 202 VDIILAHHFGQEELQANLDLIQTYRLHIAQDINQENLQLFLSSYNGRKDLEIERPILGQN 261
Query: 620 -GGDVTLKCPVMLVVGDQAPHEDAV 691
TLKC +LVVGD +P +AV
Sbjct: 262 DNKSKTLKCSTLLVVGDNSPAVEAV 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,344,499
Number of extensions: 1460539
Number of successful extensions: 4727
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4702
Number of HSP's successfully gapped: 6
Length of query: 557
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 453
Effective length of database: 8,754,644
Effective search space: 3965853732
Effective search space used: 3965853732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002153
(1672 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1616 0.0
>gb|GL896236.1| Sus scrofa unplaced genomic scaffold chrU_scaffold597
Length = 70069
Score = 1616 bits (815), Expect = 0.0
Identities = 839/843 (99%), Gaps = 3/843 (0%)
Strand = Plus / Minus
Query: 828 tggcctcctcctgcatgactcgcctatcccggtctcgcacagcctccctgaccagcgcag 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20294 tggcctcctcctgcatgactcgcctatcccggtctcgcacagcctccctgaccagcgcag 20235
Query: 888 cctccattgatggcaaccggtcccgctctcgcaccttgtcccagagcagcgagtctggga 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20234 cctccattgatggcaaccggtcccgctctcgcaccttgtcccagagcagcgagtctggga 20175
Query: 948 ctcttccttcagggcccccggggcacaccatggaggtctcctgttgaatgacccttgttg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20174 ctcttccttcagggcccccggggcacaccatggaggtctcctgttgaatgacccttgttg 20115
Query: 1008 ccctggtgtgggacccagccctcacctcccccagcactaacctgggaggtgcctagggcg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20114 ccctggtgtgggacccagccctcacctcccccagcactaacctgggaggtgcctagggcg 20055
Query: 1068 ctgggccagagggagcaagggaagatgggcaaatcatatggggagatgaccttgatctct 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20054 ctgggccagagggagcaagggaagatgggcaaatcatatggggagatgaccttgatctct 19995
Query: 1128 gattgctaccctaaccttgacctctaacctgtgattctcctcagctcctgggagagatgt 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19994 gattgctaccctaaccttgacctctaacctgtgattctcctcagctcctgggagagatgt 19935
Query: 1188 cctaatatctcttagggacccaggcccctaaatgatccctctccttcatcttggtgttaa 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19934 cctaatatctcttagggacccaggcccctaaatgatccctctccttcatcttggtgttaa 19875
Query: 1248 ggtggagaaggcacgtatctcttctccctaatctaggtgtctgtcgctaagggataaggg 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874 ggtggagaaggcacgtatctcttctccctaatctaggtgtctgtcgctaagggataaggg 19815
Query: 1308 gttgctgtagttgtccgtggtgtctccactggatgctctctccttatcccatatcgcaag 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19814 gttgctgtagttgtccgtggtgtctccactggatgctctctccttatcccatatcgcaag 19755
Query: 1368 ggtagggggcttggggctggcaccactcaccaaagctgatagggcttctcatgaaccctt 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19754 ggtagggggcttggggctggcaccactcaccaaagctgatagggcttctcatgaaccctt 19695
Query: 1428 cagacctctgaagggtatgggcctacacgaatgtgtgccggggagacttgctgctggctt 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19694 cagacctctgaagggtatgggcctacacgaatgtgtgccggggagacttgctgctggctt 19635
Query: 1488 agtggtcctcaggatgtgacagaaacattcggtgtggaaatggaagttggaatgggaggt 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19634 agtggtcctcaggatgtgacagaaacattcggtgtggaaatggaagttggaatgggaggt 19575
Query: 1548 ggtgggcagtgaacaagtgtgagggaaggattggagctgggcagtaggaaggggcctggg 1607
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 19574 ggtgggcagtgaacaagtgtgagggaaggattggagctgggcagtgggaaggggcctggg 19515
Query: 1608 gcca-tggctgcactaac-ttggtagctgcctagac-gtgtgtgtctagagtgggagggg 1664
|||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 19514 gccattggctgcactaactttggtagctgcctagacagtgtgtgtctagagtgggagggg 19455
Query: 1665 gga 1667
|||
Sbjct: 19454 gga 19452
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 102 ataaatcctgtttccagccgctgtttcagtttggggatatgcaagaaatcattcagaact 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25017 ataaatcctgtttccagccgctgtttcagtttggggatatgcaagaaatcattcagaact 24958
Query: 162 ttgtgcgggtccatgtggatgcccctgggatggaagagggggctcccgtgttccctttgg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24957 ttgtgcgggtccatgtggatgcccctgggatggaagagggggctcccgtgttccctttgg 24898
Query: 222 g 222
|
Sbjct: 24897 g 24897
Score = 212 bits (107), Expect = 5e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 488 caggaagagctgtctggaaattctgagttaatacaaaagtatagaaatatcattacacat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22815 caggaagagctgtctggaaattctgagttaatacaaaagtatagaaatatcattacacat 22756
Query: 548 gcccccaacctggcaaacattgaattgtactggaacagctacaacaa 594
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22755 gcccccaacctggcaaacattgaattgtactggaacagctacaacaa 22709
Score = 139 bits (70), Expect = 6e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 32 cagacccctgagccaggaggagtgagaaccctgacccctaaccccactgcgtccagccaa 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 cagacccctgagccaggaggagtgagaaccctgacccctaaccccactgcgtccagccaa 26987
Query: 92 taggagtcca 101
||||||||||
Sbjct: 26986 taggagtcca 26977
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 222 gatatcagtacccgtctctggaccagcttgcagacatgatcccgtgcatcctacagtact 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24717 gatatcagtacccgtctctggaccagcttgcagacatgatcccgtgcatcctacagtact 24658
Query: 282 taaa 285
||||
Sbjct: 24657 taaa 24654
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 286 tttctcctcaataattggaattggtgttggagctggagcctacgtcctctctcgatatgc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23696 tttctcctcaataattggaattggtgttggagctggagcctacgtcctctctcgatatgc 23637
Query: 346 t 346
|
Sbjct: 23636 t 23636
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 432 agcttacaggcctcacctcttccatttcggagatgatccttgggcatcttttcagccagg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23047 agcttacaggcctcacctcttccatttcggagatgatccttgggcatcttttcagccagg 22988
Score = 109 bits (55), Expect = 5e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 773 cagccaggcaaactgaccgaggccttcaagtacttcctgcagggcatgggctata 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20559 cagccaggcaaactgaccgaggccttcaagtacttcctgcagggcatgggctata 20505
Score = 105 bits (53), Expect = 8e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 381 tcatcaacatcgatcccaatgccaagggctggatggactgggcagcccacaag 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23293 tcatcaacatcgatcccaatgccaagggctggatggactgggcagcccacaag 23241
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 644 cctgtgatgctggtggtaggagaccaagcaccccatgaagatgcagtggt 693
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21340 cctgtgatgctggtggtaggagaccaagcaccccatgaagatgcagtggt 21291
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 691 ggtggaatgcaactcaaaactggaccccacccagacttctttcctcaag 739
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21037 ggtggaatgcaactcaaaactggaccccacccagacttctttcctcaag 20989
Score = 93.7 bits (47), Expect = 3e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 595 ccgccgagacctgaactttgagcgcggaggtgatgtcactctcaagt 641
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21951 ccgccgagacctgaactttgagcgcggaggtgatgtcactctcaagt 21905
Score = 75.8 bits (38), Expect = 7e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 738 agatggctgactctggaggtcagccgcagctgactcag 775
||||||||||||||||||||||||||||||||||||||
Sbjct: 20742 agatggctgactctggaggtcagccgcagctgactcag 20705
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,776,596
Number of extensions: 333
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 13
Length of query: 1672
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1650
Effective length of database: 2,808,408,574
Effective search space: 4633874147100
Effective search space used: 4633874147100
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)