Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos... 203 2e-52
>ref|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos taurus].
Length = 166
Score = 203 bits (516), Expect = 2e-52
Identities = 97/109 (88%), Positives = 101/109 (92%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ AYQ GQN VYNELN+GRREEYAVLDRRGG DPE GGKPQRKKNP+EVVYNEL
Sbjct: 55 FSRSANAPAYQQGQNPVYNELNVGRREEYAVLDRRGGFDPEKGGKPQRKKNPNEVVYNEL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
RKDKMAEAYSEIGMK +NQRRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 115 RKDKMAEAYSEIGMKSDNQRRRGKGHDGLYQGLSTATKDTYDALHMQAL 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,992,800
Number of extensions: 1488142
Number of successful extensions: 5622
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5614
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chai... 137 2e-32
>ref|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chain isoform 2
precursor [Canis familiaris].
Length = 188
Score = 137 bits (344), Expect = 2e-32
Identities = 74/98 (75%), Positives = 79/98 (80%), Gaps = 8/98 (8%)
Frame = +1
Query: 106 ELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYN--------ELRKDKMAEAYSE 261
ELN+ REEY VLD+R GLDPEMGGK QRK+NP EVVYN L+KDKMAEAYSE
Sbjct: 91 ELNLRGREEYEVLDKRRGLDPEMGGK-QRKRNPQEVVYNCPCPLLCLVLQKDKMAEAYSE 149
Query: 262 IGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
IG+K E RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 150 IGIKSE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,976,230
Number of extensions: 1537152
Number of successful extensions: 5739
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5733
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isof... 188 8e-48
Alignment gi|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isof... 181 8e-46
>ref|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isoform 1 precursor
[Homo sapiens].
Length = 164
Score = 188 bits (477), Expect = 8e-48
Identities = 92/109 (84%), Positives = 98/109 (89%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSAD AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKPQR+KNP E +YNEL
Sbjct: 55 FSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNEL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
+KDKMAEAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 115 QKDKMAEAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 161
>ref|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isoform 2 precursor
[Homo sapiens].
Length = 163
Score = 181 bits (460), Expect = 8e-46
Identities = 91/109 (83%), Positives = 97/109 (88%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSAD AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKP R+KNP E +YNEL
Sbjct: 55 FSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNEL 113
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
+KDKMAEAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 114 QKDKMAEAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,952,761
Number of extensions: 1493955
Number of successful extensions: 5583
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5572
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus mu... 165 5e-41
Alignment gi|NP_001106865.1| CD247 antigen isoform eta precursor [Mus mus... 130 2e-30
Alignment gi|NP_001106863.1| CD247 antigen isoform iota precursor [Mus mu... 130 2e-30
Alignment gi|NP_112439.1| CD247 antigen isoform eta precursor [Mus muscul... 130 2e-30
Alignment gi|NP_001106864.2| CD247 antigen isoform theta precursor [Mus m... 125 4e-29
>ref|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus musculus].
Length = 164
Score = 165 bits (418), Expect = 5e-41
Identities = 82/109 (75%), Positives = 92/109 (84%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L
Sbjct: 55 FSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNAL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
+KDKMAEAYSEIG KGE RRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 115 QKDKMAEAYSEIGTKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQTL 161
>ref|NP_001106865.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 130 bits (326), Expect = 2e-30
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L
Sbjct: 55 FSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNAL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 321
+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 115 QKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106863.1| CD247 antigen isoform iota precursor [Mus musculus].
Length = 177
Score = 130 bits (326), Expect = 2e-30
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L
Sbjct: 55 FSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNAL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 321
+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 115 QKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_112439.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 130 bits (326), Expect = 2e-30
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L
Sbjct: 55 FSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNAL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 321
+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 115 QKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106864.2| CD247 antigen isoform theta precursor [Mus musculus].
Length = 188
Score = 125 bits (315), Expect = 4e-29
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L
Sbjct: 55 FSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGK-QRRRNPQEGVYNAL 113
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 321
+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 114 QKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,486,156
Number of extensions: 1249403
Number of successful extensions: 4577
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4537
Number of HSP's successfully gapped: 5
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus... 224 5e-59
>ref|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus scrofa].
Length = 166
Score = 224 bits (572), Expect = 5e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Frame = +1
Query: 49 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 228
FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL
Sbjct: 55 FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNEL 114
Query: 229 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 375
RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 115 RKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,367,958
Number of extensions: 963607
Number of successful extensions: 3801
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3798
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002159
(1045 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1215 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1215 bits (613), Expect = 0.0
Identities = 697/721 (96%), Gaps = 3/721 (0%)
Strand = Plus / Plus
Query: 319 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259150 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 91259209
Query: 379 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259210 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 91259269
Query: 439 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259270 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 91259329
Query: 499 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259330 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 91259389
Query: 559 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatgctt 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259390 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatgctt 91259449
Query: 619 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259450 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 91259509
Query: 679 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259510 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 91259569
Query: 739 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259570 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 91259629
Query: 799 gtattgttctgtcagtattggaatggcttcgcttctgctgtaaatttggcttctgttgtc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259630 gtattgttctgtcagtattggaatggcttcgcttctgctgtaaatttggcttctgttgtc 91259689
Query: 859 agcgaaccctctcatttcttggtgactgggccggggaaggctgttctgccccccgttgaa 918
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 91259690 agcgaaccctctcatttcttggtgactgggccgggg-aggctgttctgccaccccgtgaa 91259748
Query: 919 ggatccgggcaaaggggaaaatgggaattggtaccaccccaagaaggctaaaaagggaa- 977
||||||||||| ||||||| |||||| |||||| || || || ||||| || ||||||
Sbjct: 91259749 ggatccgggcagaggggaagatgggagttggtagcagccagaggaggctgaagagggaag 91259808
Query: 978 caatggtggctccaggaatgggacccgggagcccaaagcccgggaagggggcaggaaagg 1037
|| |||||||| |||| |||||| | ||||||| | |||||||| ||||||||||||||
Sbjct: 91259809 cagtggtggct-cagggatgggagcagggagccagaggcccgggaggggggcaggaaagg 91259867
Query: 1038 a 1038
|
Sbjct: 91259868 a 91259868
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 106 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91254142 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 91254201
Query: 166 cctgagatggggggaaaaccg 186
|||||||||||||||||||||
Sbjct: 91254202 cctgagatggggggaaaaccg 91254222
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 48 gttcagcaggagcgcggacgtctccgcctaccagtcgggccagaaccaggtctataacg 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91253465 gttcagcaggagcgcggacgtctccgcctaccagtcgggccagaaccaggtctataacg 91253523
Score = 113 bits (57), Expect = 2e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 223 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaagggtgag 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91255633 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaagggtgag 91255689
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 1 aactgcggccggtgcccgcgcccccgctgtggccgcacttgaaccctg 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91253260 aactgcggccggtgcccgcgcccccgctgtggccgcacttgaaccctg 91253307
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 278 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 322
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91257878 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 91257922
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 186 gcagaggaagaagaatccccatgaagtcgtgtacaatg 223
||||||||||||||||||||||||||||||||||||||
Sbjct: 91254784 gcagaggaagaagaatccccatgaagtcgtgtacaatg 91254821
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,565,823
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 7
Length of query: 1045
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1024
Effective length of database: 2,808,413,156
Effective search space: 2875815071744
Effective search space used: 2875815071744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)