Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos... 203 2e-52
>ref|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos taurus].
Length = 166
Score = 203 bits (517), Expect = 2e-52
Identities = 97/110 (88%), Positives = 102/110 (92%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ AYQ GQN VYNELN+GRREEYAVLDRRGG DPE GGKPQRKKNP+EVVYNE
Sbjct: 54 KFSRSANAPAYQQGQNPVYNELNVGRREEYAVLDRRGGFDPEKGGKPQRKKNPNEVVYNE 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
LRKDKMAEAYSEIGMK +NQRRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 114 LRKDKMAEAYSEIGMKSDNQRRRGKGHDGLYQGLSTATKDTYDALHMQAL 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,114,458
Number of extensions: 1695451
Number of successful extensions: 6941
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6929
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,240,222
Effective search space: 3987262160
Effective search space used: 3987262160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chai... 137 3e-32
>ref|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chain isoform 2
precursor [Canis familiaris].
Length = 188
Score = 137 bits (344), Expect = 3e-32
Identities = 74/98 (75%), Positives = 79/98 (80%), Gaps = 8/98 (8%)
Frame = +2
Query: 206 ELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYN--------ELRKDKMAEAYSE 361
ELN+ REEY VLD+R GLDPEMGGK QRK+NP EVVYN L+KDKMAEAYSE
Sbjct: 91 ELNLRGREEYEVLDKRRGLDPEMGGK-QRKRNPQEVVYNCPCPLLCLVLQKDKMAEAYSE 149
Query: 362 IGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
IG+K E RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 150 IGIKSE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 185
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,322,072
Number of extensions: 1751475
Number of successful extensions: 7105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7089
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 279
Effective length of database: 15,374,224
Effective search space: 4289408496
Effective search space used: 4289408496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isof... 189 4e-48
Alignment gi|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isof... 182 4e-46
>ref|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isoform 1 precursor
[Homo sapiens].
Length = 164
Score = 189 bits (480), Expect = 4e-48
Identities = 93/115 (80%), Positives = 101/115 (87%)
Frame = +2
Query: 131 LSFSLQFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHE 310
L ++FSRSAD AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKPQR+KNP E
Sbjct: 49 LFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQE 108
Query: 311 VVYNELRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
+YNEL+KDKMAEAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 109 GLYNELQKDKMAEAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 161
>ref|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isoform 2 precursor
[Homo sapiens].
Length = 163
Score = 182 bits (463), Expect = 4e-46
Identities = 92/115 (80%), Positives = 100/115 (86%)
Frame = +2
Query: 131 LSFSLQFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHE 310
L ++FSRSAD AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKP R+KNP E
Sbjct: 49 LFLRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQE 107
Query: 311 VVYNELRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
+YNEL+KDKMAEAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 108 GLYNELQKDKMAEAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,102,727
Number of extensions: 1697278
Number of successful extensions: 6795
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6781
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 280
Effective length of database: 14,868,908
Effective search space: 4163294240
Effective search space used: 4163294240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus mu... 166 4e-41
Alignment gi|NP_001106865.1| CD247 antigen isoform eta precursor [Mus mus... 130 2e-30
Alignment gi|NP_001106863.1| CD247 antigen isoform iota precursor [Mus mu... 130 2e-30
Alignment gi|NP_112439.1| CD247 antigen isoform eta precursor [Mus muscul... 130 2e-30
Alignment gi|NP_001106864.2| CD247 antigen isoform theta precursor [Mus m... 126 4e-29
>ref|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus musculus].
Length = 164
Score = 166 bits (419), Expect = 4e-41
Identities = 82/110 (74%), Positives = 93/110 (84%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN
Sbjct: 54 KFSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNA 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
L+KDKMAEAYSEIG KGE RRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 114 LQKDKMAEAYSEIGTKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQTL 161
>ref|NP_001106865.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 130 bits (327), Expect = 2e-30
Identities = 64/92 (69%), Positives = 75/92 (81%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN
Sbjct: 54 KFSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNA 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 421
L+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 114 LQKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106863.1| CD247 antigen isoform iota precursor [Mus musculus].
Length = 177
Score = 130 bits (327), Expect = 2e-30
Identities = 64/92 (69%), Positives = 75/92 (81%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN
Sbjct: 54 KFSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNA 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 421
L+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 114 LQKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_112439.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 130 bits (327), Expect = 2e-30
Identities = 64/92 (69%), Positives = 75/92 (81%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN
Sbjct: 54 KFSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNA 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 421
L+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 114 LQKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106864.2| CD247 antigen isoform theta precursor [Mus musculus].
Length = 188
Score = 126 bits (316), Expect = 4e-29
Identities = 64/92 (69%), Positives = 75/92 (81%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSA+ +A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN
Sbjct: 54 KFSRSAETAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGK-QRRRNPQEGVYNA 112
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQ 421
L+KDKMAEAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 113 LQKDKMAEAYSEIGTKGE--RRRGKGHDGLYQ 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,730,851
Number of extensions: 1409372
Number of successful extensions: 5481
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5436
Number of HSP's successfully gapped: 5
Length of query: 384
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 281
Effective length of database: 12,523,851
Effective search space: 3519202131
Effective search space used: 3519202131
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus... 225 4e-59
>ref|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus scrofa].
Length = 166
Score = 225 bits (573), Expect = 4e-59
Identities = 109/110 (99%), Positives = 110/110 (100%)
Frame = +2
Query: 146 QFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 325
+FSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE
Sbjct: 54 KFSRSADVSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNE 113
Query: 326 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 475
LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 114 LRKDKMAEAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,713,993
Number of extensions: 1100950
Number of successful extensions: 4641
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4634
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 283
Effective length of database: 8,829,335
Effective search space: 2498701805
Effective search space used: 2498701805
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002161
(1154 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1380 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1380 bits (696), Expect = 0.0
Identities = 711/716 (99%)
Strand = Plus / Plus
Query: 419 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259150 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 91259209
Query: 479 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259210 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 91259269
Query: 539 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259270 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 91259329
Query: 599 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259330 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 91259389
Query: 659 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatgctt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259390 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatgctt 91259449
Query: 719 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259450 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 91259509
Query: 779 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259510 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 91259569
Query: 839 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259570 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 91259629
Query: 899 gtattgttctgtcagtattggaatggcttcgcttctgctgtaaatttggcttctgttgtc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259630 gtattgttctgtcagtattggaatggcttcgcttctgctgtaaatttggcttctgttgtc 91259689
Query: 959 agcgaaccctctcatttcttggtgactgggccggggaggctgttctgccaccccgtgaag 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259690 agcgaaccctctcatttcttggtgactgggccggggaggctgttctgccaccccgtgaag 91259749
Query: 1019 gatccgggcagaggggaagatgggagttggtagcagccagaggaagctgaagagggaagc 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 91259750 gatccgggcagaggggaagatgggagttggtagcagccagaggaggctgaagagggaagc 91259809
Query: 1079 agtggtggctcagggatgggagcagggagccaaaagcccggggagggggcaggaaa 1134
|||||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct: 91259810 agtggtggctcagggatgggagcagggagccagaggcccgggaggggggcaggaaa 91259865
Score = 400 bits (202), Expect = e-109
Identities = 205/206 (99%)
Strand = Plus / Plus
Query: 1 ggacggtagagctgagaaaacgggcggccaggctgctggctcctcaagggccgggctggg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 91253318 ggacggtagagctgagaaaaggggcggccaggctgctggctcctcaagggccgggctggg 91253377
Query: 61 gcaggcagggcgcgctccgctggccgtcgaggagcggagggaggctgcccgcacggagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91253378 gcaggcagggcgcgctccgctggccgtcgaggagcggagggaggctgcccgcacggagta 91253437
Query: 121 acgcgctttcctttccttctccctccagttcagcaggagcgcggacgtctccgcctacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91253438 acgcgctttcctttccttctccctccagttcagcaggagcgcggacgtctccgcctacca 91253497
Query: 181 gtcgggccagaaccaggtctataacg 206
||||||||||||||||||||||||||
Sbjct: 91253498 gtcgggccagaaccaggtctataacg 91253523
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 206 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91254142 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 91254201
Query: 266 cctgagatggggggaaaaccg 286
|||||||||||||||||||||
Sbjct: 91254202 cctgagatggggggaaaaccg 91254222
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 323 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaaggg 375
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91255633 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaaggg 91255685
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 378 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 422
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Sbjct: 91257878 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 91257922
Score = 75.8 bits (38), Expect = 5e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 286 gcagaggaagaagaatccccatgaagtcgtgtacaatg 323
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Sbjct: 91254784 gcagaggaagaagaatccccatgaagtcgtgtacaatg 91254821
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,038,987
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 6
Length of query: 1154
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1133
Effective length of database: 2,808,413,156
Effective search space: 3181932105748
Effective search space used: 3181932105748
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)