Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos... 301 9e-82
>ref|NP_776437.1| T-cell surface glycoprotein CD3 zeta chain [Bos taurus].
Length = 166
Score = 301 bits (772), Expect = 9e-82
Identities = 148/163 (90%), Positives = 153/163 (93%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKWTA VIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVI+TALFLR KFSRSA+
Sbjct: 1 MKWTAHVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIVTALFLRAKFSRSAN 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
AYQ GQN VYNELN+GRREEYAVLDRRGG DPE GGKPQRKKNP+EVVYNELRKDKMA
Sbjct: 61 APAYQQGQNPVYNELNVGRREEYAVLDRRGGFDPEKGGKPQRKKNPNEVVYNELRKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
EAYSEIGMK +NQRRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 121 EAYSEIGMKSDNQRRRGKGHDGLYQGLSTATKDTYDALHMQAL 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 79,212,801
Number of extensions: 2496645
Number of successful extensions: 9836
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9820
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,107,870
Effective search space: 6743561860
Effective search space used: 6743561860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chai... 137 4e-32
Alignment gi|NP_001003171.1| high affinity immunoglobulin epsilon recepto... 52 2e-06
>ref|XP_854348.1| PREDICTED: similar to T-cell receptor zeta chain isoform 2
precursor [Canis familiaris].
Length = 188
Score = 137 bits (344), Expect = 4e-32
Identities = 74/98 (75%), Positives = 79/98 (80%), Gaps = 8/98 (8%)
Frame = +3
Query: 405 ELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYN--------ELRKDKMAEAYSE 560
ELN+ REEY VLD+R GLDPEMGGK QRK+NP EVVYN L+KDKMAEAYSE
Sbjct: 91 ELNLRGREEYEVLDKRRGLDPEMGGK-QRKRNPQEVVYNCPCPLLCLVLQKDKMAEAYSE 149
Query: 561 IGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
IG+K E RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 150 IGIKSE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 185
>ref|NP_001003171.1| high affinity immunoglobulin epsilon receptor subunit gamma [Canis
lupus familiaris].
Length = 86
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +3
Query: 195 TALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFS-RSADVS 371
+A+V++ +L + Q+ L +P+LCY+LD ILF+YG+++T L+ R K R A V+
Sbjct: 3 SAVVLLLLLLVE------QAAALGEPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAVT 56
Query: 372 AYQSGQNQVYNELNIGRREEYAVL 443
+Y+ + +Y L+ +E Y L
Sbjct: 57 SYEK-PDGIYTGLSTRNQETYETL 79
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 82,404,019
Number of extensions: 2569576
Number of successful extensions: 9858
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9834
Number of HSP's successfully gapped: 2
Length of query: 586
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 478
Effective length of database: 15,274,216
Effective search space: 7301075248
Effective search space used: 7301075248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isof... 276 3e-74
Alignment gi|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isof... 270 3e-72
Alignment gi|NP_004097.1| high affinity immunoglobulin epsilon receptor s... 52 2e-06
>ref|NP_932170.1| T-cell surface glycoprotein CD3 zeta chain isoform 1 precursor
[Homo sapiens].
Length = 164
Score = 276 bits (707), Expect = 3e-74
Identities = 138/163 (84%), Positives = 145/163 (88%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW AL AILQAQ PIT AQSFGLLDPKLCYLLDGILFIYGVI+TALFLR KFSRSAD
Sbjct: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKPQR+KNP E +YNEL+KDKMA
Sbjct: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
EAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 121 EAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 161
>ref|NP_000725.1| T-cell surface glycoprotein CD3 zeta chain isoform 2 precursor
[Homo sapiens].
Length = 163
Score = 270 bits (690), Expect = 3e-72
Identities = 137/163 (84%), Positives = 144/163 (88%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW AL AILQAQ PIT AQSFGLLDPKLCYLLDGILFIYGVI+TALFLR KFSRSAD
Sbjct: 1 MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSAD 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
AYQ GQNQ+YNELN+GRREEY VLD+R G DPEMGGKP R+KNP E +YNEL+KDKMA
Sbjct: 61 APAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKP-RRKNPQEGLYNELQKDKMA 119
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
EAYSEIGMKGE RRRGKGHDGLYQGLSTATKDTYDALHMQ L
Sbjct: 120 EAYSEIGMKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQAL 160
>ref|NP_004097.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Homo sapiens].
Length = 86
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 249 QSFGLLDPKLCYLLDGILFIYGVIITALFLREKFS-RSADVSAYQSGQNQVYNELNIGRR 425
Q+ L +P+LCY+LD ILF+YG+++T L+ R K R A +++Y+ VY L+ +
Sbjct: 15 QAAALGEPQLCYILDAILFLYGIVLTLLYCRLKIQVRKAAITSYEKSDG-VYTGLSTRNQ 73
Query: 426 EEYAVL 443
E Y L
Sbjct: 74 ETYETL 79
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,813,558
Number of extensions: 2510961
Number of successful extensions: 9574
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9548
Number of HSP's successfully gapped: 3
Length of query: 586
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,737,052
Effective search space: 7044310856
Effective search space used: 7044310856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus mu... 244 2e-64
Alignment gi|NP_001106865.1| CD247 antigen isoform eta precursor [Mus mus... 208 9e-54
Alignment gi|NP_001106863.1| CD247 antigen isoform iota precursor [Mus mu... 208 9e-54
Alignment gi|NP_112439.1| CD247 antigen isoform eta precursor [Mus muscul... 208 9e-54
Alignment gi|NP_001106864.2| CD247 antigen isoform theta precursor [Mus m... 204 2e-52
Alignment gi|NP_034315.1| high affinity immunoglobulin epsilon receptor s... 51 3e-06
>ref|NP_001106862.1| CD247 antigen isoform zeta precursor [Mus musculus].
Length = 164
Score = 244 bits (622), Expect = 2e-64
Identities = 122/163 (74%), Positives = 135/163 (82%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW V+ IL +FP AQSFGLLDPKLCYLLDGILFIYGVIITAL+LR KFSRSA+
Sbjct: 1 MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAE 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
+A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L+KDKMA
Sbjct: 61 TAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNALQKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
EAYSEIG KGE RRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 121 EAYSEIGTKGE--RRRGKGHDGLYQGLSTATKDTYDALHMQTL 161
>ref|NP_001106865.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 208 bits (530), Expect = 9e-54
Identities = 104/145 (71%), Positives = 117/145 (80%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW V+ IL +FP AQSFGLLDPKLCYLLDGILFIYGVIITAL+LR KFSRSA+
Sbjct: 1 MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAE 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
+A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L+KDKMA
Sbjct: 61 TAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNALQKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQ 620
EAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 121 EAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106863.1| CD247 antigen isoform iota precursor [Mus musculus].
Length = 177
Score = 208 bits (530), Expect = 9e-54
Identities = 104/145 (71%), Positives = 117/145 (80%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW V+ IL +FP AQSFGLLDPKLCYLLDGILFIYGVIITAL+LR KFSRSA+
Sbjct: 1 MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAE 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
+A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L+KDKMA
Sbjct: 61 TAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNALQKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQ 620
EAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 121 EAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_112439.1| CD247 antigen isoform eta precursor [Mus musculus].
Length = 206
Score = 208 bits (530), Expect = 9e-54
Identities = 104/145 (71%), Positives = 117/145 (80%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW V+ IL +FP AQSFGLLDPKLCYLLDGILFIYGVIITAL+LR KFSRSA+
Sbjct: 1 MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAE 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
+A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L+KDKMA
Sbjct: 61 TAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGKQQRRRNPQEGVYNALQKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQ 620
EAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 121 EAYSEIGTKGE--RRRGKGHDGLYQ 143
>ref|NP_001106864.2| CD247 antigen isoform theta precursor [Mus musculus].
Length = 188
Score = 204 bits (519), Expect = 2e-52
Identities = 104/145 (71%), Positives = 117/145 (80%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKW V+ IL +FP AQSFGLLDPKLCYLLDGILFIYGVIITAL+LR KFSRSA+
Sbjct: 1 MKWKVSVLACILHVRFPGAEAQSFGLLDPKLCYLLDGILFIYGVIITALYLRAKFSRSAE 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
+A NQ+YNELN+GRREEY VL+++ DPEMGGK QR++NP E VYN L+KDKMA
Sbjct: 61 TAANLQDPNQLYNELNLGRREEYDVLEKKRARDPEMGGK-QRRRNPQEGVYNALQKDKMA 119
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQ 620
EAYSEIG KGE RRRGKGHDGLYQ
Sbjct: 120 EAYSEIGTKGE--RRRGKGHDGLYQ 142
>ref|NP_034315.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Mus musculus].
Length = 86
Score = 50.8 bits (120), Expect = 3e-06
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +3
Query: 249 QSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSADVSAYQSGQNQVYNELNIGRRE 428
Q+ L +P+LCY+LD +LF+YG+++T L+ R K A + + VY LN +E
Sbjct: 15 QAAALGEPQLCYILDAVLFLYGIVLTLLYCRLKIQVRKAAIASREKADAVYTGLNTRSQE 74
Query: 429 EYAVL 443
Y L
Sbjct: 75 TYETL 79
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,373,817
Number of extensions: 2101221
Number of successful extensions: 8115
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8049
Number of HSP's successfully gapped: 6
Length of query: 586
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 479
Effective length of database: 12,403,707
Effective search space: 5941375653
Effective search space used: 5941375653
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus... 328 4e-90
Alignment gi|XP_003355138.1| PREDICTED: high affinity immunoglobulin epsi... 52 1e-06
Alignment gi|NP_001001265.1| high affinity immunoglobulin epsilon recepto... 52 1e-06
>ref|NP_999320.2| T-cell surface glycoprotein CD3 zeta chain [Sus scrofa].
Length = 166
Score = 328 bits (842), Expect = 4e-90
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +3
Query: 186 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 365
MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD
Sbjct: 1 MKWTALVIVAILQAQFPITAAQSFGLLDPKLCYLLDGILFIYGVIITALFLREKFSRSAD 60
Query: 366 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 545
VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA
Sbjct: 61 VSAYQSGQNQVYNELNIGRREEYAVLDRRGGLDPEMGGKPQRKKNPHEVVYNELRKDKMA 120
Query: 546 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 674
EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL
Sbjct: 121 EAYSEIGMKGENQRRRGKGHDGLYQGLSTATKDTYDALHMQTL 163
>ref|XP_003355138.1| PREDICTED: high affinity immunoglobulin epsilon receptor subunit
gamma-like [Sus scrofa].
Length = 86
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 249 QSFGLLDPKLCYLLDGILFIYGVIITALFLREKFS-RSADVSAYQSGQNQVYNELNIGRR 425
Q+ L +P+LCY+LD ILF+YG+++T L+ R K R A + +Y+ VY L+ +
Sbjct: 15 QAAALGEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQ 73
Query: 426 EEYAVL 443
E Y L
Sbjct: 74 ETYETL 79
>ref|NP_001001265.1| high affinity immunoglobulin epsilon receptor subunit gamma
precursor [Sus scrofa].
Length = 86
Score = 51.6 bits (122), Expect = 1e-06
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 249 QSFGLLDPKLCYLLDGILFIYGVIITALFLREKFS-RSADVSAYQSGQNQVYNELNIGRR 425
Q+ L +P+LCY+LD ILF+YG+++T L+ R K R A + +Y+ VY L+ +
Sbjct: 15 QAAALGEPQLCYILDAILFLYGIVLTLLYCRLKLQVRKAAIDSYEKSDG-VYTGLSTRNQ 73
Query: 426 EEYAVL 443
E Y L
Sbjct: 74 ETYETL 79
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,137,208
Number of extensions: 1615574
Number of successful extensions: 6492
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6479
Number of HSP's successfully gapped: 3
Length of query: 586
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 482
Effective length of database: 8,754,644
Effective search space: 4219738408
Effective search space used: 4219738408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002162
(1758 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 2091 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 2091 bits (1055), Expect = 0.0
Identities = 1110/1127 (98%), Gaps = 3/1127 (0%)
Strand = Plus / Plus
Query: 618 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259150 cagggactcagcacggccaccaaggacacctatgatgccctccacatgcagaccctgccg 91259209
Query: 678 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259210 cctcgctaacagcactagagatttcaccacccacaggccagacctgcagacacccagatt 91259269
Query: 738 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259270 gttcaagacccaagaaaagcatttacaacccgttttactcttatttctctaccacccaag 91259329
Query: 798 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259330 tattcctctttatgaacaggatgcttccagttgtaacatttggttatattcccattccaa 91259389
Query: 858 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatcctt 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 91259390 actgtcacagagttcttccctggacgctaggagggagtgtgtcccccaggccttatgctt 91259449
Query: 918 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259450 gaggagcccgctgtgagtgcagcatgctgtgttctggtttcccagaggccgtgggccggc 91259509
Query: 978 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259510 ccagctctgtgcagctccaggctctgacctgggagacgggcaccctccttttcacacaca 91259569
Query: 1038 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259570 cagctgggttcaggctaaatccccaaagaaaccccagatgttagtgcacactcatcatct 91259629
Query: 1098 gtattgttctgtcagtactggaatggcttcgcttctgctgtaaatttggcttctgttgtc 1157
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259630 gtattgttctgtcagtattggaatggcttcgcttctgctgtaaatttggcttctgttgtc 91259689
Query: 1158 agcgaaccctctcatttcttggtgactgggccggggaggctgttctgccaccccgtgaag 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259690 agcgaaccctctcatttcttggtgactgggccggggaggctgttctgccaccccgtgaag 91259749
Query: 1218 gatccgggcagaggggaagatgggagttggtagcagccagaggaggctgaagagggaagc 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259750 gatccgggcagaggggaagatgggagttggtagcagccagaggaggctgaagagggaagc 91259809
Query: 1278 agtggtggctcagggatgggagcagggagccagaggcccgggaggggggcaggaaaggan 1337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259810 agtggtggctcagggatgggagcagggagccagaggcccgggaggggggcaggaaaggac 91259869
Query: 1338 nnnnnntgcaatcaagcatatgttccccgttatagaacttgtgtgccagaccctgtgggg 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259870 cccccctgcaatcaagcatatgttccccgttatagaacttgtgtgccagaccctgtgggg 91259929
Query: 1398 accagaagataaagaagcctatctttgcccccgtggagcccacactcacagggcagcaag 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259930 accagaagataaagaagcctatctttgcccccgtggagcccacactcacagggcagcaag 91259989
Query: 1458 ttgtgaagagtctggtgtgagagaatgttaggcacttgctcacctcacactgtgtccaag 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91259990 ttgtgaagagtctggtgtgagagaatgttaggcacttgctcacctcacactgtgtccaag 91260049
Query: 1518 acaaacctgtcacggggagacctccaagggagactcggcaccactcagccccagaaagat 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91260050 acaaacctgtcacggggagacctccaagggagactcggcaccactcagccccagaaagat 91260109
Query: 1578 cccacaggacagtggcatggaagcgccctgggccacttagtgcgacagtgctgtgtgata 1637
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |||
Sbjct: 91260110 cccacaggacagtggcatggaagcgccttggccaacttagtgcgacagtgctgtgtaata 91260169
Query: 1638 aagtgcatgtggccacggatggaaaaccctctctgctccgcttggtctt-atttatactg 1696
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 91260170 aagtgcatgtggccacggatggaaaaccctctctgctccgcttggtcttaatttatactg 91260229
Query: 1697 gnttgctagagcctt-atcttctgcgtaataaa-gcttcagtgcaaa 1741
| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 91260230 gtttgctagagccttaatcttctgcgtaataaaggcttcagtgcaaa 91260276
Score = 482 bits (243), Expect = e-133
Identities = 243/243 (100%)
Strand = Plus / Plus
Query: 1 gaaccgaaagggggagtgtgagtttcttggccctgttggcaggtgccttctcaaaggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91170039 gaaccgaaagggggagtgtgagtttcttggccctgttggcaggtgccttctcaaaggccc 91170098
Query: 61 catcgtcctccacttcctgaggaggcagcagcagaacaaagctagcagagacttcttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91170099 catcgtcctccacttcctgaggaggcagcagcagaacaaagctagcagagacttcttttc 91170158
Query: 121 ttttcttcgtccagccacgactgcctcagcctctgcctcccggcaccatcctggggaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91170159 ttttcttcgtccagccacgactgcctcagcctctgcctcccggcaccatcctggggaagg 91170218
Query: 181 acaagatgaagtggacagcgcttgttatcgtggccatcctgcaggcacagtttccaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91170219 acaagatgaagtggacagcgcttgttatcgtggccatcctgcaggcacagtttccaatta 91170278
Query: 241 cag 243
|||
Sbjct: 91170279 cag 91170281
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 240 acagctgcgcagagcttcggcctgcttgatcccaaactctgctacctgttggatgggatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91251868 acagctgcgcagagcttcggcctgcttgatcccaaactctgctacctgttggatgggatc 91251927
Query: 300 ctcttcatctatggtgtcatcatcactgccctgttcctgagagagaag 347
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91251928 ctcttcatctatggtgtcatcatcactgccctgttcctgagagagaag 91251975
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 405 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91254142 gaactcaatatcggacgaagagaggagtatgcggtcttggatagaagagggggcctggat 91254201
Query: 465 cctgagatggggggaaaaccg 485
|||||||||||||||||||||
Sbjct: 91254202 cctgagatggggggaaaaccg 91254222
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 346 agttcagcaggagcgcggacgtctccgcctaccagtcgggccagaaccaggtctataacg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91253464 agttcagcaggagcgcggacgtctccgcctaccagtcgggccagaaccaggtctataacg 91253523
Score = 105 bits (53), Expect = 8e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 522 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaaggg 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91255633 gagctgcgaaaagacaagatggcagaggcctacagtgagattgggatgaaggg 91255685
Score = 89.7 bits (45), Expect = 5e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 577 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 621
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91257878 agaaccagcggcgaagaggcaaggggcacgatggcctttaccagg 91257922
Score = 75.8 bits (38), Expect = 7e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 485 gcagaggaagaagaatccccatgaagtcgtgtacaatg 522
||||||||||||||||||||||||||||||||||||||
Sbjct: 91254784 gcagaggaagaagaatccccatgaagtcgtgtacaatg 91254821
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,330,570
Number of extensions: 372
Number of successful extensions: 372
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 8
Length of query: 1758
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1736
Effective length of database: 2,808,408,574
Effective search space: 4875397284464
Effective search space used: 4875397284464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)