Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071607.1| 60S ribosomal protein L36 [Bos taurus]. 187 5e-48
Alignment gi|XP_002684975.1| PREDICTED: ribosomal protein L36-like [Bos t... 172 2e-43
Alignment gi|XP_587998.2| PREDICTED: ribosomal protein L36-like [Bos taur... 172 2e-43
Alignment gi|XP_002700147.1| PREDICTED: 60S ribosomal protein L36-like [B... 155 4e-38
Alignment gi|XP_600709.2| PREDICTED: 60S ribosomal protein L36-like [Bos ... 155 4e-38
Alignment gi|XP_002695997.1| PREDICTED: 60S ribosomal protein L36-like [B... 96 2e-20
Alignment gi|XP_002702211.1| PREDICTED: 60S ribosomal protein L36-like [B... 96 2e-20
>ref|NP_001071607.1| 60S ribosomal protein L36 [Bos taurus].
Length = 105
Score = 187 bits (476), Expect = 5e-48
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNV KPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_002684975.1| PREDICTED: ribosomal protein L36-like [Bos taurus].
Length = 105
Score = 172 bits (437), Expect = 2e-43
Identities = 86/94 (91%), Positives = 88/94 (93%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MAL YPMAVGLNKGHKVTKN+ KPRHS RRG LTKHTKFVRDMIREVCG APYERRAMEL
Sbjct: 1 MALCYPMAVGLNKGHKVTKNMGKPRHSCRRGHLTKHTKFVRDMIREVCGLAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHI AKR+REELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIHAKREREELSNVL 94
>ref|XP_587998.2| PREDICTED: ribosomal protein L36-like [Bos taurus].
Length = 105
Score = 172 bits (437), Expect = 2e-43
Identities = 86/94 (91%), Positives = 88/94 (93%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MAL YPMAVGLNKGHKVTKN+ KPRHS RRG LTKHTKFVRDMIREVCG APYERRAMEL
Sbjct: 1 MALCYPMAVGLNKGHKVTKNMGKPRHSCRRGHLTKHTKFVRDMIREVCGLAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHI AKR+REELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIHAKREREELSNVL 94
>ref|XP_002700147.1| PREDICTED: 60S ribosomal protein L36-like [Bos taurus].
Length = 130
Score = 155 bits (391), Expect = 4e-38
Identities = 79/104 (75%), Positives = 87/104 (83%)
Frame = +3
Query: 6 FRRGSHWREAAMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 185
F SH R A+AL +PMA+GLNKGHK+TKNVSK RHS RLTKHT+F++DMIREVC
Sbjct: 15 FCLASHCRAVAVALLFPMAIGLNKGHKMTKNVSKLRHSHLLRRLTKHTEFMQDMIREVCS 74
Query: 186 FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNV 317
F PYE RAMELLKVSKDKRALKF KKRV T+IRAKRKREELSNV
Sbjct: 75 FTPYEWRAMELLKVSKDKRALKFTKKRVRTYIRAKRKREELSNV 118
>ref|XP_600709.2| PREDICTED: 60S ribosomal protein L36-like [Bos taurus].
Length = 130
Score = 155 bits (391), Expect = 4e-38
Identities = 79/104 (75%), Positives = 87/104 (83%)
Frame = +3
Query: 6 FRRGSHWREAAMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCG 185
F SH R A+AL +PMA+GLNKGHK+TKNVSK RHS RLTKHT+F++DMIREVC
Sbjct: 15 FCLASHCRAVAVALLFPMAIGLNKGHKMTKNVSKLRHSHLLRRLTKHTEFMQDMIREVCS 74
Query: 186 FAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNV 317
F PYE RAMELLKVSKDKRALKF KKRV T+IRAKRKREELSNV
Sbjct: 75 FTPYEWRAMELLKVSKDKRALKFTKKRVRTYIRAKRKREELSNV 118
>ref|XP_002695997.1| PREDICTED: 60S ribosomal protein L36-like [Bos taurus].
Length = 131
Score = 96.3 bits (238), Expect = 2e-20
Identities = 54/90 (60%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = +3
Query: 54 PMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHT-KFVRDMIREVCGFAPYERRAMELLKVS 230
P GLNKG K TK +++PRHS G L KHT +F +D+I+EV FA E+ A E KVS
Sbjct: 11 PCHHGLNKGQKGTKVMTQPRHSCGLGHLIKHTTEFSQDVIQEVFSFALNEQHATEQFKVS 70
Query: 231 KDKRALKFIKKRVGTHIRAKRKREELSNVL 320
KDK+ALKFI+K +GTHI AKRK ELSNVL
Sbjct: 71 KDKQALKFIQKMLGTHICAKRKARELSNVL 100
>ref|XP_002702211.1| PREDICTED: 60S ribosomal protein L36-like [Bos taurus].
Length = 131
Score = 96.3 bits (238), Expect = 2e-20
Identities = 54/90 (60%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = +3
Query: 54 PMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHT-KFVRDMIREVCGFAPYERRAMELLKVS 230
P GLNKG K TK +++PRHS G L KHT +F +D+I+EV FA E+ A E KVS
Sbjct: 11 PCHHGLNKGQKGTKVMTQPRHSCGLGHLIKHTTEFSQDVIQEVFSFALNEQHATEQFKVS 70
Query: 231 KDKRALKFIKKRVGTHIRAKRKREELSNVL 320
KDK+ALKFI+K +GTHI AKRK ELSNVL
Sbjct: 71 KDKQALKFIQKMLGTHICAKRKARELSNVL 100
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,278,737
Number of extensions: 676683
Number of successful extensions: 1651
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1645
Number of HSP's successfully gapped: 7
Length of query: 221
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 123
Effective length of database: 14,438,750
Effective search space: 1775966250
Effective search space used: 1775966250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533943.2| PREDICTED: similar to ribosomal protein L36 [Ca... 144 9e-35
Alignment gi|XP_547987.2| PREDICTED: similar to ankyrin repeat domain 9 [... 76 2e-14
Alignment gi|XP_544200.2| PREDICTED: similar to ribosomal protein L36 [Ca... 72 3e-13
>ref|XP_533943.2| PREDICTED: similar to ribosomal protein L36 [Canis familiaris].
Length = 87
Score = 144 bits (362), Expect = 9e-35
Identities = 76/94 (80%), Positives = 76/94 (80%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDK KREELSNVL
Sbjct: 61 LKVSKDK------------------KREELSNVL 76
>ref|XP_547987.2| PREDICTED: similar to ankyrin repeat domain 9 [Canis familiaris].
Length = 612
Score = 76.3 bits (186), Expect = 2e-14
Identities = 38/62 (61%), Positives = 47/62 (75%)
Frame = +3
Query: 57 MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 236
MA+G +KGH+ TKN SK H GRLTK TK V++MI+E+CGFA E+ AM LLKVSKD
Sbjct: 1 MAMGPSKGHEATKNTSKQTHRGHSGRLTKRTKTVQEMIQEMCGFALCEQCAMTLLKVSKD 60
Query: 237 KR 242
K+
Sbjct: 61 KQ 62
>ref|XP_544200.2| PREDICTED: similar to ribosomal protein L36 [Canis familiaris].
Length = 107
Score = 72.4 bits (176), Expect(2) = 3e-13
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +3
Query: 192 PYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
P +RRAMELLKVSKDKR L+ IKKRVGTH+RAKR+ EELSNVL
Sbjct: 54 PVQRRAMELLKVSKDKRTLRLIKKRVGTHVRAKRETEELSNVL 96
Score = 20.4 bits (41), Expect(2) = 3e-13
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 152 VCTGHDPGGVR 184
V G DPGGVR
Sbjct: 41 VRAGQDPGGVR 51
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,124,830
Number of extensions: 639394
Number of successful extensions: 1708
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1703
Number of HSP's successfully gapped: 4
Length of query: 221
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 122
Effective length of database: 15,574,240
Effective search space: 1900057280
Effective search space used: 1900057280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056229.2| 60S ribosomal protein L36 [Homo sapiens]. 189 2e-48
Alignment gi|NP_378669.1| 60S ribosomal protein L36 [Homo sapiens]. 189 2e-48
Alignment gi|XP_002344489.1| PREDICTED: 60S ribosomal protein L36-like [H... 157 1e-38
Alignment gi|XP_003403765.1| PREDICTED: 60S ribosomal protein L36-like [H... 146 2e-35
>ref|NP_056229.2| 60S ribosomal protein L36 [Homo sapiens].
Length = 105
Score = 189 bits (480), Expect = 2e-48
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|NP_378669.1| 60S ribosomal protein L36 [Homo sapiens].
Length = 105
Score = 189 bits (480), Expect = 2e-48
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_002344489.1| PREDICTED: 60S ribosomal protein L36-like [Homo sapiens].
Length = 151
Score = 157 bits (396), Expect = 1e-38
Identities = 85/111 (76%), Positives = 88/111 (79%), Gaps = 5/111 (4%)
Frame = +3
Query: 3 AFRRGSHWREAAMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVC 182
AFR G WR AA+ALRYPMA+GLNKGHKVTKNVS PRHS RR LTKHTKFV+DMIREVC
Sbjct: 30 AFRHGCLWRAAAVALRYPMAMGLNKGHKVTKNVSNPRHSCRRRCLTKHTKFVQDMIREVC 89
Query: 183 GFAPYERRAMELLKVSKDKRAL---KFIKKRVGT--HIRAKRKREELSNVL 320
GFAPYE MEL KVSK L KFIKKRVG HI AKRKREELSNVL
Sbjct: 90 GFAPYECHTMELQKVSKAMELLKTSKFIKKRVGARMHIHAKRKREELSNVL 140
>ref|XP_003403765.1| PREDICTED: 60S ribosomal protein L36-like [Homo sapiens].
Length = 122
Score = 146 bits (368), Expect = 2e-35
Identities = 80/103 (77%), Positives = 83/103 (80%), Gaps = 5/103 (4%)
Frame = +3
Query: 27 REAAMALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERR 206
R AA+ALRYPMA+GLNKGHKVTKNVS PRHS RR LTKHTKFV+DMIREVCGFAPYE
Sbjct: 9 RAAAVALRYPMAMGLNKGHKVTKNVSNPRHSCRRRCLTKHTKFVQDMIREVCGFAPYECH 68
Query: 207 AMELLKVSKDKRAL---KFIKKRVGT--HIRAKRKREELSNVL 320
MEL KVSK L KFIKKRVG HI AKRKREELSNVL
Sbjct: 69 TMELQKVSKAMELLKTSKFIKKRVGARMHIHAKRKREELSNVL 111
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,392,083
Number of extensions: 610095
Number of successful extensions: 1609
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1604
Number of HSP's successfully gapped: 4
Length of query: 221
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 122
Effective length of database: 15,033,728
Effective search space: 1834114816
Effective search space used: 1834114816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061200.2| 60S ribosomal protein L36 [Mus musculus]. 189 2e-48
Alignment gi|XP_003084542.1| PREDICTED: 60S ribosomal protein L36-like [M... 187 5e-48
Alignment gi|XP_003086276.1| PREDICTED: 60S ribosomal protein L36-like [M... 187 5e-48
Alignment gi|NP_001182694.1| hypothetical protein LOC622534 [Mus musculus]. 187 5e-48
Alignment gi|XP_001480771.1| PREDICTED: 60S ribosomal protein L36-like [M... 186 1e-47
Alignment gi|XP_003086571.1| PREDICTED: 60S ribosomal protein L36-like [M... 186 1e-47
Alignment gi|XP_488179.4| PREDICTED: 60S ribosomal protein L36-like [Mus ... 186 1e-47
Alignment gi|XP_001004069.1| PREDICTED: 60S ribosomal protein L36-like [M... 186 1e-47
Alignment gi|XP_922368.1| PREDICTED: 60S ribosomal protein L36-like [Mus ... 181 6e-46
Alignment gi|XP_920165.1| PREDICTED: 60S ribosomal protein L36-like [Mus ... 180 7e-46
>ref|NP_061200.2| 60S ribosomal protein L36 [Mus musculus].
Length = 105
Score = 189 bits (480), Expect = 2e-48
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_003084542.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 187 bits (476), Expect = 5e-48
Identities = 93/94 (98%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVS+PRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSEPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_003086276.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 187 bits (476), Expect = 5e-48
Identities = 93/94 (98%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVS+PRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSEPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|NP_001182694.1| hypothetical protein LOC622534 [Mus musculus].
Length = 105
Score = 187 bits (476), Expect = 5e-48
Identities = 93/94 (98%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVS+PRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSEPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_001480771.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 186 bits (473), Expect = 1e-47
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVC FAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCDFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_003086571.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 186 bits (473), Expect = 1e-47
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVC FAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCDFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_488179.4| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 104
Score = 186 bits (472), Expect = 1e-47
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRG LTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGCLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_001004069.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 104
Score = 186 bits (472), Expect = 1e-47
Identities = 93/94 (98%), Positives = 93/94 (98%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRG LTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGCLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_922368.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 181 bits (458), Expect = 6e-46
Identities = 89/94 (94%), Positives = 91/94 (96%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKN+SK RHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNISKLRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKR LKFIKKRVGTHIR KRKREELSN+L
Sbjct: 61 LKVSKDKRTLKFIKKRVGTHIRTKRKREELSNML 94
>ref|XP_920165.1| PREDICTED: 60S ribosomal protein L36-like [Mus musculus].
Length = 105
Score = 180 bits (457), Expect = 7e-46
Identities = 90/94 (95%), Positives = 92/94 (97%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGR T HTKFV+DMIREVCGFAPY+RRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRPTIHTKFVQDMIREVCGFAPYKRRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,615,794
Number of extensions: 501199
Number of successful extensions: 1457
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1456
Number of HSP's successfully gapped: 14
Length of query: 221
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 124
Effective length of database: 12,704,067
Effective search space: 1575304308
Effective search space used: 1575304308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123135.1| PREDICTED: 60S ribosomal protein L36-like is... 189 1e-48
Alignment gi|XP_003354064.1| PREDICTED: 60S ribosomal protein L36-like [S... 189 1e-48
>ref|XP_003123135.1| PREDICTED: 60S ribosomal protein L36-like isoform 1 [Sus scrofa].
Length = 105
Score = 189 bits (480), Expect = 1e-48
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
>ref|XP_003354064.1| PREDICTED: 60S ribosomal protein L36-like [Sus scrofa].
Length = 105
Score = 189 bits (480), Expect = 1e-48
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +3
Query: 39 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 218
MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL
Sbjct: 1 MALRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMEL 60
Query: 219 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 320
LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL
Sbjct: 61 LKVSKDKRALKFIKKRVGTHIRAKRKREELSNVL 94
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,717,153
Number of extensions: 539912
Number of successful extensions: 1054
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1054
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,978,717
Effective search space: 1131318342
Effective search space used: 1131318342
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002170
(665 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 274 6e-71
Sscrofa_Chr18 270 9e-70
Sscrofa_Chr13 266 1e-68
Sscrofa_Chr06 165 4e-38
Sscrofa_Chr08 151 6e-34
Sscrofa_Chr05 103 1e-19
Sscrofa_Chr09 94 1e-16
Sscrofa_Chr14 88 7e-15
>Sscrofa_Chr02
|| Length = 162569375
Score = 274 bits (138), Expect = 6e-71
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 131 gcgcctcaccaagcacaccaagtttgtacgggacatgatccgggaggtgtgcggctttgc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73809416 gcgcctcaccaagcacaccaagtttgtacgggacatgatccgggaggtgtgcggctttgc 73809357
Query: 191 gccttatgagcggcgggccatggagctgctcaaggtctccaaagacaagcgggccctcaa 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73809356 gccttatgagcggcgggccatggagctgctcaaggtctccaaagacaagcgggccctcaa 73809297
Query: 251 gttcatcaagaaaagggt 268
||||||||||||||||||
Sbjct: 73809296 gttcatcaagaaaagggt 73809279
Score = 250 bits (126), Expect = 8e-64
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 266 ggtggggacacatatccgtgccaagaggaagagagaggagctgagcaatgttctagcggc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73809015 ggtggggacacatatccgtgccaagaggaagagagaggagctgagcaatgttctagcggc 73808956
Query: 326 catgaggaaagcagcagccaagaaggactgagccccctcccctctgtgcctaataaagcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73808955 catgaggaaagcagcagccaagaaggactgagccccctcccctctgtgcctaataaagcc 73808896
Query: 386 ttttct 391
||||||
Sbjct: 73808895 ttttct 73808890
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 35 agccatggctctgcgctaccccatggctgtgggcctcaacaagggccataaagtgaccaa 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73810275 agccatggctctgcgctaccccatggctgtgggcctcaacaagggccataaagtgaccaa 73810216
Query: 95 gaacgtgagcaagccgaggcacagccgccgccgcggg 131
|||||||||||||||||||||||||||||||||||||
Sbjct: 73810215 gaacgtgagcaagccgaggcacagccgccgccgcggg 73810179
Score = 65.9 bits (33), Expect = 3e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 4 ccttccgccgcggcagccattggagagaggcag 36
|||||||||||||||||||||||||||||||||
Sbjct: 73810492 ccttccgccgcggcagccattggagagaggcag 73810460
Score = 58.0 bits (29), Expect = 6e-06
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 283 gtgccaagaggaagagagaggagctgagcaatgttctagcggccatgaggaaagcagcag 342
|||||||||||||| | ||| ||||||||||| | || || |||||||||||| ||||||
Sbjct: 119995729 gtgccaagaggaagggggagaagctgagcaatatgctggcagccatgaggaaaccagcag 119995788
Query: 343 ccaag 347
||||
Sbjct: 119995789 tcaag 119995793
>Sscrofa_Chr18
|| Length = 61220071
Score = 270 bits (136), Expect = 9e-70
Identities = 291/341 (85%), Gaps = 10/341 (2%)
Strand = Plus / Minus
Query: 15 ggcagccattggagagaggcagccatggctctgcgctaccccatggctgtgggcctcaac 74
|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 12272605 ggcatccattggagagcagcagccatggctctgcactaccccatggctgtgggcctcaac 12272546
Query: 75 aagggccataaagtgaccaagaacgtgagcaagccgaggcacagccgc---cgcc----- 126
||||||||||| ||||||||||| ||||||||||| |||| |||| | ||||
Sbjct: 12272545 aagggccataaggtgaccaagaatgtgagcaagccaaggcgcagctgttggcgccactac 12272486
Query: 127 -gcgggcgcctcaccaagcacaccaagtttgtacgggacatgatccg-ggaggtgtgcgg 184
|| || |||||| ||||||||||||||| | |||||||| || | |||||||||| |
Sbjct: 12272485 tgcaggtgcctcatcaagcacaccaagttcatgtgggacatgttctgtggaggtgtgcag 12272426
Query: 185 ctttgcgccttatgagcggcgggccatggagctgctcaaggtctccaaagacaagcgggc 244
||| | ||||| ||| || ||||||||||||||||||||||||||| |||||| ||||
Sbjct: 12272425 cttcacaccttagaagcagcaggccatggagctgctcaaggtctccaaggacaagtgggc 12272366
Query: 245 cctcaagttcatcaagaaaagggtggggacacatatccgtgccaagaggaagagagagga 304
|| |||||||||| |||||||||| |||||| | ||| | |||||||||||||||||||
Sbjct: 12272365 ccccaagttcatccagaaaagggtagggacatacatctgcaccaagaggaagagagagga 12272306
Query: 305 gctgagcaatgttctagcggccatgaggaaagcagcagcca 345
||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 12272305 gctgagcaacgttctggcagccatgaggaaagcagcagcca 12272265
Score = 170 bits (86), Expect = 6e-40
Identities = 298/367 (81%), Gaps = 15/367 (4%)
Strand = Plus / Plus
Query: 36 gccatggctctgcgctaccccatggctgtgggcctcaacaagggccataaagtgaccaag 95
|||| ||||||| |||||||| ||||||||||| ||||||||||||| | |||||||||
Sbjct: 10973814 gccacggctctgtgctaccccctggctgtgggcttcaacaagggccacagggtgaccaag 10973873
Query: 96 aacgtgagcaagccgaggcacagccgccgccgcgggcgcctcaccaagcacaccaagtt- 154
|| || |||||||| |||||||||| | |||||||||||||| ||||||| | |||||
Sbjct: 10973874 aatgtaagcaagcccaggcacagcccctgccgcgggcgcctctccaagcatatcaagtgc 10973933
Query: 155 -tgtacgggacatgatccgggaggtgtgcggctttgcgcctta--------tgagcggcg 205
||| |||||||| | | |||||| || |||| || ||||| ||||| ||
Sbjct: 10973934 ctgt---ggacatgacctgagaggtgcgcagcttcgccccttacgagcagctgagcagct 10973990
Query: 206 ggccatggagctgctcaaggtctccaaagacaagcgggccctcaagttcatcaagaaaag 265
|||||||| ||| |||||||||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 10973991 ggccatggggctactcaaggtctccaaggacaagcaggcccacgcgttcatcaagaaaag 10974050
Query: 266 ggtgggg--acacatatccgtgccaagaggaagagagaggagctgagcaatgttctagcg 323
|||| || ||||| ||||| || | ||||| |||||||| ||||| | ||||| ||
Sbjct: 10974051 ggtgaggatacacacatccgcacctaaaggaaaagagaggacctgaggactgttccggcc 10974110
Query: 324 gccatgaggaaagcagcagccaagaaggactgagccccctcccctctgtgcctaataaag 383
||||||||||||||||||||||||||||| | || |||| |||| |||| |||||||
Sbjct: 10974111 accatgaggaaagcagcagccaagaaggacagcgctacctctcctccgtgcataataaaa 10974170
Query: 384 ccttttc 390
|||||||
Sbjct: 10974171 ccttttc 10974177
>Sscrofa_Chr13
|| Length = 218635234
Score = 266 bits (134), Expect = 1e-68
Identities = 302/357 (84%), Gaps = 12/357 (3%)
Strand = Plus / Plus
Query: 34 cagccatggctctgcgctaccccatggctgtgggcctcaacaagggccataaagtgacca 93
|||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct: 100568847 cagccatggctctgtgctaccccatggccatgggcctcaacaagagccataaggtgacca 100568906
Query: 94 agaacgtgagcaagccgaggcacagccgccgccgcgggcgcctcaccaagcacaccaagt 153
||||||||| |||||||||||||||||||||| || | | ||||||||||| | ||||||
Sbjct: 100568907 agaacgtgaacaagccgaggcacagccgccgctgctgtctcctcaccaagctctccaagt 100568966
Query: 154 ttgtacgggacatgatccgggaggtgtgcggctttgcgccttatgagcggcgggccatgg 213
| | |||||||||||| ||| ||| || |||||||||||| |||| || |||
Sbjct: 100568967 tcctgcgggacatgatctgggcagtgcgcagctttgcgccttttgagggg-------tgg 100569019
Query: 214 agctgctcaaggtctccaaagacaagcgggccctcaagttcatcaagaaaagggtgggga 273
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 100569020 agctgctcaaggtctccaagcgcaagcgggccctcaagttcatc---aaaagggtgggga 100569076
Query: 274 cacatatccgtgccaagaggaagagagaggagctgagcaatgttctagcggccatgagga 333
|||| ||||| |||||||||| || |||||||||||||| ||||| ||||||| |||
Sbjct: 100569077 cacacatccgcgccaagagga--agtgaggagctgagcaacgttctggcggccaccaggg 100569134
Query: 334 aagcagcagccaagaaggactgagccccctcccctctgtgcctaataaagccttttc 390
| || |||||||||||||||| | |||| | |||| |||| |||||||||| ||||
Sbjct: 100569135 acgcggcagccaagaaggactaaacccctttccctttgtgtgtaataaagccctttc 100569191
>Sscrofa_Chr06
|| Length = 157765593
Score = 165 bits (83), Expect = 4e-38
Identities = 292/357 (81%), Gaps = 6/357 (1%)
Strand = Plus / Plus
Query: 36 gccatggctctgcgctaccccatggctgtgggcctcaacaagggccataaagtgaccaag 95
||||||||||||| || |||||| |||||||||||| ||||||||| | |||||||||
Sbjct: 104988920 gccatggctctgcactctcccatgcctgtgggcctcagcaagggccacag-gtgaccaag 104988978
Query: 96 aacgtgagcaagccgaggcacagccgccgccgcgggcgcctcaccaagcacaccaagttt 155
||||||||||| | |||||| ||| ||| | |||| |||||| |||||| ||||||
Sbjct: 104988979 aacgtgagcaaactgaggcagagctgcctc---gggcacctcactgagcacagcaagttg 104989035
Query: 156 gtacgggacatgatccgggaggtgtgcggctttgcgccttatgagcggcgggccatggag 215
|| ||||| | |||||||| | ||| ||||| |||||||||| | ||||||| |
Sbjct: 104989036 gtggaggacaggttccgggagctatgcagctttttgccttatgaggtgtgggccataatg 104989095
Query: 216 ctgctcaaggtctccaaagacaagcgg-gccctcaagttcatcaagaaaagggtggggac 274
|| ||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct: 104989096 cttctccaggtctccaaggacaagttgagccctcaagttcatcaagaaaagggtggggac 104989155
Query: 275 acatatccgtgccaagaggaagagagaggagctgagcaatgttc-tagcggccatgagga 333
| | ||| || ||||||||||||| ||| ||||| | ||| | | || ||||| ||||
Sbjct: 104989156 atacatctatggcaagaggaagagaaaggtactgagtagtgtccttggcagccataagga 104989215
Query: 334 aagcagcagccaagaaggactgagccccctcccctctgtgcctaataaagccttttc 390
||| |||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct: 104989216 aaggggcagccaagaaggactgagccctctcctctctgtatataataaagccttttc 104989272
>Sscrofa_Chr08
|| Length = 148491826
Score = 151 bits (76), Expect = 6e-34
Identities = 224/271 (82%), Gaps = 3/271 (1%)
Strand = Plus / Plus
Query: 103 gcaagccgaggcacagccgccgccgcgggcgcctcaccaagcacaccaagtttgtacggg 162
||||||||||||| ||| || | | |||| ||||||||||||||||||| | | | ||
Sbjct: 10946856 gcaagccgaggcagggccaccactgtgggcacctcaccaagcacaccaaggtcatgcagg 10946915
Query: 163 acatgatccgggaggtgtgcggctttgcgccttatgagcggcgggccatggagctgctca 222
|| |||||| |||||||||| ||| | | || ||||||||||||||| |||| |||||
Sbjct: 10946916 acgtgatccaggaggtgtgccacttcgtgactaatgagcggcgggccaaggagaggctca 10946975
Query: 223 aggtctccaaagacaagcgggccctcaagttcatcaagaaaagggtggggacacatatcc 282
|||||||| | |||| | ||||| ||||||||||| ||||||| ||||| ||||| ||||
Sbjct: 10946976 aggtctccgaggacaggtgggcc-tcaagttcatcgagaaaagcgtgggtacacacatcc 10947034
Query: 283 gtgccaagaggaagagagag--gagctgagcaatgttctagcggccatgaggaaagcagc 340
||||||| ||||||||||| |||| |||| | || || || |||||||||||| ||
Sbjct: 10947035 atgccaaggggaagagagagaggagccgagccacgtcctggcactcatgaggaaagcggc 10947094
Query: 341 agccaagaaggactgagccccctcccctctg 371
|||| |||||||||||| |||||||||||||
Sbjct: 10947095 agcctagaaggactgagtcccctcccctctg 10947125
>Sscrofa_Chr05
|| Length = 111506441
Score = 103 bits (52), Expect = 1e-19
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 205 gggccatggagctgctcaaggtctccaaagacaagcgggccctcaagttcatcaagaaaa 264
|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 72371196 gggccatggagctgctcaagatctccaaggacaagctggccctcaagttcatcaagaaaa 72371255
Query: 265 gggt 268
||||
Sbjct: 72371256 gggt 72371259
>Sscrofa_Chr09
|| Length = 153670197
Score = 93.7 bits (47), Expect = 1e-16
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 220 tcaaggtctccaaagacaagcgggccctcaagttcatcaagaaaagggtggggacacata 279
||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||| |
Sbjct: 37043023 tcaaggtctccaaggacaagtgggccctcaagttcaccaggaaaagggtggggacacaca 37042964
Query: 280 tccgtgccaagaggaagag 298
||||| | ||||||||||
Sbjct: 37042963 tccgttgctagaggaagag 37042945
>Sscrofa_Chr14
|| Length = 153851969
Score = 87.7 bits (44), Expect = 7e-15
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 207 gccatggagctgctcaaggtctccaaagacaagcgggccctcaagttcatcaagaaaagg 266
|||||||||||||| ||||||||||| ||||||| ||||||||||| | ||| |||||||
Sbjct: 41930949 gccatggagctgctgaaggtctccaaggacaagcaggccctcaagtgcttcaggaaaagg 41931008
Query: 267 gtggggac 274
||||||||
Sbjct: 41931009 gtggggac 41931016
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,220,208
Number of extensions: 394
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 17
Length of query: 665
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 644
Effective length of database: 2,808,413,156
Effective search space: 1808618072464
Effective search space used: 1808618072464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)