Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 541 e-154
Alignment gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri... 155 1e-37
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 121 2e-27
Alignment gi|NP_776718.1| lambda-crystallin homolog [Bos taurus]. 100 7e-21
>ref|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Bos taurus].
Length = 314
Score = 541 bits (1393), Expect = e-154
Identities = 273/314 (86%), Positives = 290/314 (92%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ VR KKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFVRSMSSSSSAAASAKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DIL KS+KGIEESLRKVAKKKFA+NPK DEFV KTLSSISTSTDAASVVHSTDLVVEAI
Sbjct: 61 DILEKSRKGIEESLRKVAKKKFAKNPKGADEFVAKTLSSISTSTDAASVVHSTDLVVEAI 120
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENL++K+ELFKRLDKFAAEHTIFASNTSSLQITSLAN+TTRQDRFAGLHFFNPVPLMKL
Sbjct: 121 VENLQMKNELFKRLDKFAAEHTIFASNTSSLQITSLANSTTRQDRFAGLHFFNPVPLMKL 180
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 871
VEV+KTPMTSQKT ESL+DFS+ LGKHPV+CKDTPGFIVNRLLVPYL+EAVRL ERG+AS
Sbjct: 181 VEVIKTPMTSQKTFESLLDFSRALGKHPVACKDTPGFIVNRLLVPYLMEAVRLCERGEAS 240
Query: 872 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 1051
KEDID AMKLGAGYPMGPFELLDYVGLDTTKFI+DGWHEMDS+NPLFQP P++NKLVAE
Sbjct: 241 KEDIDMAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEMDSKNPLFQPCPSLNKLVAEK 300
Query: 1052 KFGKKTGEGFYKYK 1093
KFGKK+GEGFYKYK
Sbjct: 301 KFGKKSGEGFYKYK 314
>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
Length = 773
Score = 155 bits (392), Expect = 1e-37
Identities = 92/290 (31%), Positives = 154/290 (53%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
VK + V+G GLMGAGIAQV+ G +L D T L + ++ + + L KKK +
Sbjct: 371 VKQLAVVGAGLMGAGIAQVSVDKGLQTILKDTTLPALGRGQQQVFKGLNDKVKKKTLTSF 430
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
+ F S++ D D+V+EA+ E+L +K + K + +H +FAS
Sbjct: 431 ERDAMF-----SNLIGQLDYRGF-EKADMVIEAVFEDLNLKHRVLKEAEAVIPDHCVFAS 484
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I +A + R ++ G+H+F+PV M+L+E++ T TS+ T S VD GK
Sbjct: 485 NTSALPIGEIATVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTTASAVDVGLRQGK 544
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 949
+ KD PGF R L P + E +R+ + G K ++D ++ G+P+G L+D G
Sbjct: 545 VIIVVKDGPGFYTTRCLTPMMSEVIRILQEGVGPK-NLD-SLTTSFGFPVGAATLVDEGG 602
Query: 950 LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*G 1099
+D K + + +M + + +++++ G+K+G+GFY Y+ G
Sbjct: 603 VDVAKHVAENLGKMFGERFAGGSLEVLMQMISKGFLGRKSGKGFYIYQEG 652
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 121 bits (303), Expect = 2e-27
Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 16/303 (5%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAEN 406
+ V V+G G MG GI A V+ V+ + L + K I L K A K + + +
Sbjct: 297 ISSVGVLGLGTMGRGIVISFAKAQIPVIAVESDKKQLETASKIITSILEKEASKMQQSGH 356
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
P +G + ++TS S V DLV+EA+ E++ +K +F L +
Sbjct: 357 PWSGPK------PRLTTSMKELSGV---DLVIEAVYEDMNLKKHVFAELSAVCKPEALLC 407
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
+NTS+L I +A+++ R G HFF+P +MKL+EV+ + +S T+ ++++ SK +
Sbjct: 408 TNTSALDIDEIASSSDRPHLVIGTHFFSPAHVMKLLEVIPSRFSSPTTIATVMNLSKKIK 467
Query: 767 KHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 946
K V + GF+ NR+L Y + L E G + E+ID ++ G+ MGPF + D
Sbjct: 468 KIGVVVGNCFGFVGNRMLRSYYDQTYFLLEEG-SKPEEIDEVLE-EFGFKMGPFRVSDLA 525
Query: 947 GLDTTKFIIDGWHEMDSQ---NPLFQPS------------PAMNKLVAENKFGKKTGEGF 1081
GLD GW Q P P P + L +FG+KTG+G+
Sbjct: 526 GLDI------GWKSRKGQGLTGPTLPPGSSARKRGGRRYCPIPDMLCESGRFGQKTGKGW 579
Query: 1082 YKY 1090
Y Y
Sbjct: 580 YLY 582
>ref|NP_776718.1| lambda-crystallin homolog [Bos taurus].
Length = 321
Score = 99.8 bits (247), Expect = 7e-21
Identities = 79/241 (32%), Positives = 112/241 (46%), Gaps = 8/241 (3%)
Frame = +2
Query: 239 VTVIGGGLMGAGIAQVAAATGHTVVLVD----QTEDILAKSKKGIEESLRKVAKKKFAEN 406
V V+G GL+G A + A+ G V L D Q D L SLRK K
Sbjct: 12 VAVVGSGLIGRSWAMLFASAGFRVKLFDIEPRQVTDALV--------SLRKEMKMLELSG 63
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
G+ E+ LS IS +D V V E + ENL++K +LF +LDK A +H I +
Sbjct: 64 YLKGELGAEEQLSLISGCSDLREAVEGALHVQECVPENLELKRKLFAQLDKIADDHVILS 123
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
S++S L + L + H NP + LVE+V P T+ T++ + +G
Sbjct: 124 SSSSCLLPSKLFAGLAHVKQCLVAHPVNPPYYVPLVELVPHPETAPATVDRTYALMRRVG 183
Query: 767 KHPVS-CKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFEL 934
+ PV ++ GF +NRL + EA RL E G S D+D M G G +GP E
Sbjct: 184 QSPVRLLREIDGFALNRLQYAVIAEAWRLVEEGVVSPGDLDLVMSDGLGLRYAFIGPLET 243
Query: 935 L 937
+
Sbjct: 244 M 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,076,442
Number of extensions: 1652863
Number of successful extensions: 5115
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5104
Number of HSP's successfully gapped: 4
Length of query: 598
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 490
Effective length of database: 14,107,870
Effective search space: 6912856300
Effective search space used: 6912856300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl... 548 e-156
Alignment gi|XP_863185.1| PREDICTED: similar to Short chain 3-hydroxyacyl... 223 4e-58
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 151 2e-36
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 150 5e-36
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 123 7e-28
Alignment gi|XP_543175.2| PREDICTED: similar to crystallin, lamda 1 isofo... 92 1e-18
Alignment gi|XP_860418.1| PREDICTED: similar to crystallin, lamda 1 isofo... 89 1e-17
>ref|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl-CoA dehydrogenase,
mitochondrial precursor (HCDH) (Medium and short chain
L-3-hydroxyacyl-coenzyme A dehydrogenase) isoform 1
[Canis familiaris].
Length = 312
Score = 548 bits (1411), Expect = e-156
Identities = 275/314 (87%), Positives = 295/314 (93%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ VR KKI+VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFVRSVSSSSTASA--KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 58
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESLR+VAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI
Sbjct: 59 DILAKSKKGIEESLRRVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 118
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENLK K+ELFKRLDKFA+EHTIFASNTSSLQIT++ANATTRQDRFAGLHFFNPVPLMKL
Sbjct: 119 VENLKAKNELFKRLDKFASEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPLMKL 178
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 871
VEV+KTPMTSQKT ESL+DF+K LGKHPVSCKDTPGFIVNRLL+PYL+EA+RLYERGDAS
Sbjct: 179 VEVIKTPMTSQKTYESLIDFTKVLGKHPVSCKDTPGFIVNRLLIPYLMEAIRLYERGDAS 238
Query: 872 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 1051
KEDIDTAMKLGAGYP+GPFELLDYVGLDTTKFI+DGW+EMD +NPLFQP P++NKLVAEN
Sbjct: 239 KEDIDTAMKLGAGYPLGPFELLDYVGLDTTKFIMDGWYEMDPKNPLFQPIPSLNKLVAEN 298
Query: 1052 KFGKKTGEGFYKYK 1093
KFGKK+GEG+YKYK
Sbjct: 299 KFGKKSGEGYYKYK 312
>ref|XP_863185.1| PREDICTED: similar to Short chain 3-hydroxyacyl-CoA dehydrogenase,
mitochondrial precursor (HCDH) (Medium and short chain
L-3-hydroxyacyl-coenzyme A dehydrogenase) isoform 2
[Canis familiaris].
Length = 148
Score = 223 bits (569), Expect = 4e-58
Identities = 121/141 (85%), Positives = 126/141 (89%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ VR KKI+VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFVRSVSSSSTASA--KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 58
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESLR+VAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI
Sbjct: 59 DILAKSKKGIEESLRRVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 118
Query: 512 VENLKVKSELFKRLDKFAAEH 574
VENLK K+ELFKRLDKFA+E+
Sbjct: 119 VENLKAKNELFKRLDKFASEY 139
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 2
[Canis familiaris].
Length = 762
Score = 151 bits (381), Expect = 2e-36
Identities = 93/290 (32%), Positives = 152/290 (52%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
VK + ++G GLMGAGIAQV+ G +L D T L + ++ + + L KKK
Sbjct: 361 VKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKK----- 415
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
A F ++ S T D+V+EA+ E+L +K + K ++ H +FAS
Sbjct: 416 -ALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPGHCVFAS 474
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I +A A+ R ++ G+H+F+PV M+L+E++ T TS+ T S V GK
Sbjct: 475 NTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLKQGK 534
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 949
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 535 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKK-LD-SLTTSFGFPVGAATLVDEVG 592
Query: 950 LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*G 1099
+D K + + + + + ++V+ G+K+G+GFY Y+ G
Sbjct: 593 VDVAKHVSEDLGKAFGERFEGGNIELLKEMVSRGFLGRKSGKGFYIYQEG 642
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 3
[Canis familiaris].
Length = 761
Score = 150 bits (378), Expect = 5e-36
Identities = 92/290 (31%), Positives = 152/290 (52%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
V+ + ++G GLMGAGIAQV+ G +L D T L + ++ + + L KKK
Sbjct: 360 VRDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKK----- 414
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
A F ++ S T D+V+EA+ E+L +K + K ++ H +FAS
Sbjct: 415 -ALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPGHCVFAS 473
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I +A A+ R ++ G+H+F+PV M+L+E++ T TS+ T S V GK
Sbjct: 474 NTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLKQGK 533
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 949
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 534 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKK-LD-SLTTSFGFPVGAATLVDEVG 591
Query: 950 LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*G 1099
+D K + + + + + ++V+ G+K+G+GFY Y+ G
Sbjct: 592 VDVAKHVSEDLGKAFGERFEGGNIELLKEMVSRGFLGRKSGKGFYIYQEG 641
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 123 bits (308), Expect = 7e-28
Identities = 89/303 (29%), Positives = 141/303 (46%), Gaps = 16/303 (5%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAEN 406
+ V V+G G MG GI A V+ V+ + L + I L K A K + + +
Sbjct: 297 ISSVGVVGLGTMGRGIVVSLAKAKIPVIAVESDKKQLETADMIITTLLEKEASKMQRSSH 356
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
P G + T + + DLV+EA+ E + +K +F L
Sbjct: 357 PSLGPK---------PRLTTSMKELGGVDLVIEAVFEEINLKKRVFAELSAICKPEAFLC 407
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
+NTS+L I +A++T R G HFF+P +MKL+E++ + +S T+ ++++ SK +
Sbjct: 408 TNTSALDIDEIASSTDRPHLVIGTHFFSPAHVMKLLEIIPSQYSSPTTIATVMNLSKKIK 467
Query: 767 KHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 946
K V + GF+ NR+L PY + L E G + E+ID ++ G+ MGPF + D
Sbjct: 468 KIGVVVGNCFGFVGNRMLKPYYNQTYFLLEEG-SRPEEIDQVLE-EFGFKMGPFRVSDLA 525
Query: 947 GLDTTKFIIDGWHEMDSQN------PLFQPS---------PAMNKLVAENKFGKKTGEGF 1081
GLD GW Q P P+ P + L +FG+KTG+G+
Sbjct: 526 GLDV------GWKSRQGQGLTGPMVPSGTPARKRGNRRYCPIPDLLCESGRFGQKTGKGW 579
Query: 1082 YKY 1090
Y+Y
Sbjct: 580 YQY 582
>ref|XP_543175.2| PREDICTED: similar to crystallin, lamda 1 isoform 1 [Canis
familiaris].
Length = 319
Score = 92.4 bits (228), Expect = 1e-18
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 4/237 (1%)
Frame = +2
Query: 239 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAG 418
V ++G GL+G A + A+ G V L D + + + E++RK K G
Sbjct: 9 VLILGSGLIGRSWAMLFASGGFKVKLYDIEQQQVTNAL----ETIRKEMKILEQSGSLRG 64
Query: 419 DEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTS 598
E+ LS IS ++ + V + E + ENL++K ++F +LD+ + + +S+TS
Sbjct: 65 SLSSEEQLSLISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTS 124
Query: 599 SLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPV 778
L + L + +H NP + LVE+V P T+ T++ + +G+ PV
Sbjct: 125 CLLPSKLFAGLAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQSPV 184
Query: 779 S-CKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFELL 937
K+ GF +NRL + EA RL E G S D+D M G G +GP E +
Sbjct: 185 RIMKEIEGFALNRLQYAIIGEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETM 241
>ref|XP_860418.1| PREDICTED: similar to crystallin, lamda 1 isoform 3 [Canis
familiaris].
Length = 331
Score = 89.4 bits (220), Expect = 1e-17
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 4/232 (1%)
Frame = +2
Query: 254 GGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE 433
GGL+G A + A+ G V L D + + + E++RK K G E
Sbjct: 26 GGLIGRSWAMLFASGGFKVKLYDIEQQQVTNAL----ETIRKEMKILEQSGSLRGSLSSE 81
Query: 434 KTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQIT 613
+ LS IS ++ + V + E + ENL++K ++F +LD+ + + +S+TS L +
Sbjct: 82 EQLSLISGCSNIQAAVEGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLPS 141
Query: 614 SLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVS-CKD 790
L + +H NP + LVE+V P T+ T++ + +G+ PV K+
Sbjct: 142 KLFAGLAHVKQCLVVHPVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQSPVRIMKE 201
Query: 791 TPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFELL 937
GF +NRL + EA RL E G S D+D M G G +GP E +
Sbjct: 202 IEGFALNRLQYAIIGEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETM 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,760,330
Number of extensions: 1695238
Number of successful extensions: 4980
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4967
Number of HSP's successfully gapped: 7
Length of query: 598
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 489
Effective length of database: 15,240,880
Effective search space: 7452790320
Effective search space used: 7452790320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 562 e-160
Alignment gi|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 551 e-157
Alignment gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri... 158 1e-38
Alignment gi|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [H... 130 3e-30
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 130 3e-30
Alignment gi|NP_057058.2| lambda-crystallin homolog [Homo sapiens]. 92 1e-18
>ref|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 314
Score = 562 bits (1449), Expect = e-160
Identities = 282/314 (89%), Positives = 297/314 (94%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ +R KKI+VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLS+I+TSTDAASVVHSTDLVVEAI
Sbjct: 61 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI 120
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENLKVK+ELFKRLDKFAAEHTIFASNTSSLQITS+ANATTRQDRFAGLHFFNPVP+MKL
Sbjct: 121 VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKL 180
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 871
VEV+KTPMTSQKT ESLVDFSK LGKHPVSCKDTPGFIVNRLLVPYL+EA+RLYERGDAS
Sbjct: 181 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDAS 240
Query: 872 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 1051
KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFI+DGWHEMD++NPL QPSP++NKLVAEN
Sbjct: 241 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAEN 300
Query: 1052 KFGKKTGEGFYKYK 1093
KFGKKTGEGFYKYK
Sbjct: 301 KFGKKTGEGFYKYK 314
>ref|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 331
Score = 551 bits (1421), Expect = e-157
Identities = 282/331 (85%), Positives = 297/331 (89%), Gaps = 17/331 (5%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ +R KKI+VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLS+I+TSTDAASVVHSTDLVVEAI
Sbjct: 61 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAI 120
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENLKVK+ELFKRLDKFAAEHTIFASNTSSLQITS+ANATTRQDRFAGLHFFNPVP+MKL
Sbjct: 121 VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKL 180
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYER---- 859
VEV+KTPMTSQKT ESLVDFSK LGKHPVSCKDTPGFIVNRLLVPYL+EA+RLYER
Sbjct: 181 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERDFQT 240
Query: 860 -------------GDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQ 1000
GDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFI+DGWHEMD++
Sbjct: 241 CGDSNSGLGFSLKGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAE 300
Query: 1001 NPLFQPSPAMNKLVAENKFGKKTGEGFYKYK 1093
NPL QPSP++NKLVAENKFGKKTGEGFYKYK
Sbjct: 301 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 331
>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
sapiens].
Length = 763
Score = 158 bits (400), Expect = 1e-38
Identities = 95/291 (32%), Positives = 155/291 (53%), Gaps = 1/291 (0%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
VKH+ ++G GLMGAGIAQV+ G +L D T L + ++ + + L KKK
Sbjct: 361 VKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKK----- 415
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
A F ++ S T D+V+EA+ E+L +K + K ++ +H IFAS
Sbjct: 416 -ALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFAS 474
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I+ +A + R ++ G+H+F+PV M+L+E++ T TS+ T S V GK
Sbjct: 475 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGK 534
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 946
+ KD PGF R L P + E +R+ + G D K D ++ G+P+G L+D V
Sbjct: 535 VIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLD---SLTTSFGFPVGAATLVDEV 591
Query: 947 GLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*G 1099
G+D K + + ++ + + ++V++ G+K+G+GFY Y+ G
Sbjct: 592 GVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQEG 642
>ref|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [Homo sapiens].
Length = 627
Score = 130 bits (328), Expect = 3e-30
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAEN 406
V V V+G G MG GI A V+ VD ++ LA + K I L K A K + + +
Sbjct: 201 VSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASKMQQSGH 260
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
P +G + T + + DLV+EA+ E + +K ++F L
Sbjct: 261 PWSGPK---------PRLTSSVKELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLC 311
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
+NTS+L + +A++T R G HFF+P +MKL+EV+ + +S T+ ++++ SK +
Sbjct: 312 TNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIK 371
Query: 767 KHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 946
K V + GF+ NR+L PY +A L E G + E++D ++ G+ MGPF + D
Sbjct: 372 KIGVVVGNCFGFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLE-EFGFKMGPFRVSDLA 429
Query: 947 GLDTTKFIIDGWHEMDSQ---NPLFQPS------------PAMNKLVAENKFGKKTGEGF 1081
GLD GW Q P P P + L +FG+KTG+G+
Sbjct: 430 GLDV------GWKSRKGQGLTGPTLLPGTPARKRGNRRYCPIPDVLCELGRFGQKTGKGW 483
Query: 1082 YKY 1090
Y+Y
Sbjct: 484 YQY 486
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 130 bits (328), Expect = 3e-30
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAEN 406
V V V+G G MG GI A V+ VD ++ LA + K I L K A K + + +
Sbjct: 297 VSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASKMQQSGH 356
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
P +G + T + + DLV+EA+ E + +K ++F L
Sbjct: 357 PWSGPK---------PRLTSSVKELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLC 407
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
+NTS+L + +A++T R G HFF+P +MKL+EV+ + +S T+ ++++ SK +
Sbjct: 408 TNTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIK 467
Query: 767 KHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 946
K V + GF+ NR+L PY +A L E G + E++D ++ G+ MGPF + D
Sbjct: 468 KIGVVVGNCFGFVGNRMLNPYYNQAYFLLEEG-SKPEEVDQVLE-EFGFKMGPFRVSDLA 525
Query: 947 GLDTTKFIIDGWHEMDSQ---NPLFQPS------------PAMNKLVAENKFGKKTGEGF 1081
GLD GW Q P P P + L +FG+KTG+G+
Sbjct: 526 GLDV------GWKSRKGQGLTGPTLLPGTPARKRGNRRYCPIPDVLCELGRFGQKTGKGW 579
Query: 1082 YKY 1090
Y+Y
Sbjct: 580 YQY 582
>ref|NP_057058.2| lambda-crystallin homolog [Homo sapiens].
Length = 319
Score = 92.4 bits (228), Expect = 1e-18
Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 4/237 (1%)
Frame = +2
Query: 239 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAG 418
V ++G G++G A + A+ G V L D I + + E++RK K G
Sbjct: 9 VVIVGSGVIGRSWAMLFASGGFQVKLYD----IEQQQIRNALENIRKEMKLLEQAGSLKG 64
Query: 419 DEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTS 598
VE+ LS IS + V + E + E+L++K ++F +LD + I +S+TS
Sbjct: 65 SLSVEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTS 124
Query: 599 SLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPV 778
L + L + H NP + LVE+V P T+ T++ K +G+ P+
Sbjct: 125 CLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPM 184
Query: 779 SC-KDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFELL 937
K+ GF++NRL + EA RL E G S D+D M G G +GP E +
Sbjct: 185 RVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETM 241
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,745,776
Number of extensions: 1693655
Number of successful extensions: 4991
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4982
Number of HSP's successfully gapped: 6
Length of query: 598
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 490
Effective length of database: 14,737,052
Effective search space: 7221155480
Effective search space used: 7221155480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 547 e-155
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 153 4e-37
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 141 1e-33
Alignment gi|NP_084280.2| lambda-crystallin homolog [Mus musculus]. 96 9e-20
>ref|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 547 bits (1409), Expect = e-155
Identities = 273/314 (86%), Positives = 292/314 (92%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAF TRQ +R KKIL+KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFVTRQFLRSMSSSSSASAAAKKILIKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESL+++AKKKF ENPKAGDEFVEKTLS +STSTDAASVVHSTDLVVEAI
Sbjct: 61 DILAKSKKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAI 120
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENLK+K+ELF+RLDKFAAEHTIFASNTSSLQIT++ANATTRQDRFAGLHFFNPVP+MKL
Sbjct: 121 VENLKLKNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKL 180
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 871
VEV+KTPMTSQKT ESLVDF KTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRL+ERGDAS
Sbjct: 181 VEVIKTPMTSQKTFESLVDFCKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLHERGDAS 240
Query: 872 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 1051
KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFI+DGWHEM+ +NPLFQPSP+MN LVA+
Sbjct: 241 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEMEPENPLFQPSPSMNNLVAQK 300
Query: 1052 KFGKKTGEGFYKYK 1093
K GKKTGEGFYKYK
Sbjct: 301 KLGKKTGEGFYKYK 314
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 153 bits (387), Expect = 4e-37
Identities = 95/292 (32%), Positives = 155/292 (53%), Gaps = 1/292 (0%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
V+ + ++G GLMGAGIAQV+ G +L D T L + ++ + + L KKK +
Sbjct: 361 VQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQQQVFKGLNDKVKKKALTSF 420
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
+ F S++ D D+V+EA+ E+L VK ++ K ++ EH IFAS
Sbjct: 421 ERDSIF-----SNLIGQLDYKGF-EKADMVIEAVFEDLGVKHKVLKEVESVTPEHCIFAS 474
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I +A + R ++ G+H+F+PV M+L+E++ T TS+ T S V GK
Sbjct: 475 NTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLRQGK 534
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERG-DASKEDIDTAMKLGAGYPMGPFELLDYV 946
+ KD PGF R L P + E +R+ + G D K D A+ G G+P+G L D V
Sbjct: 535 VIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLD---ALTTGFGFPVGAATLADEV 591
Query: 947 GLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*GA 1102
G+D + + + + + + ++V++ G+K+G+GFY Y+ G+
Sbjct: 592 GVDVAQHVAEDLGKAFGERFGGGSVELLKQMVSKGFLGRKSGKGFYIYQEGS 643
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 141 bits (356), Expect = 1e-33
Identities = 100/302 (33%), Positives = 147/302 (48%), Gaps = 15/302 (4%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
V V V+G G MG GIA A G VV V+ L +KK I +L K A K +
Sbjct: 295 VSSVGVLGLGTMGRGIAISFARVGIPVVAVESDPKQLDTAKKIITSTLEKEASKSGQASA 354
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
K F S+ST S S DLV+EA+ E++ +K ++F L +
Sbjct: 355 KPNLRF--------SSSTKELS---SVDLVIEAVFEDMNLKKKVFAELSALCKPGAFLCT 403
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L + +A++T R G HFF+P +M+L+EV+ + +S T+ +++ SK +GK
Sbjct: 404 NTSALDVDDIASSTDRPQLVIGTHFFSPAHIMRLLEVIPSRYSSPTTIATVMSLSKRIGK 463
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 949
V + GF+ NR+L PY + L E G + ED+D ++ G+ MGPF + D G
Sbjct: 464 IGVVVGNCYGFVGNRMLAPYYNQGYFLIEEG-SKPEDVDGVLE-EFGFRMGPFRVSDLAG 521
Query: 950 LDTTKFIIDGWHEMDSQ---NPLFQP------------SPAMNKLVAENKFGKKTGEGFY 1084
LD GW Q P P SP + L +FG+KTG+G+Y
Sbjct: 522 LDV------GWKVRKGQGLTGPSLPPGTPTRKRGNTRYSPIADMLCEAGRFGQKTGKGWY 575
Query: 1085 KY 1090
+Y
Sbjct: 576 QY 577
>ref|NP_084280.2| lambda-crystallin homolog [Mus musculus].
Length = 319
Score = 95.9 bits (237), Expect = 9e-20
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 4/237 (1%)
Frame = +2
Query: 239 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAG 418
V ++G GL+G A + A+ G V L D + + + E++RK K G
Sbjct: 9 VVIVGSGLIGRSWAMLFASGGFKVKLYDIEQQQITDAL----ENIRKEMKSLEQSGSLKG 64
Query: 419 DEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTS 598
E+ LS IS + A V + E + ENL++K ++F +LD+ + I +S++S
Sbjct: 65 SLSAERQLSLISGCGNLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSS 124
Query: 599 SLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPV 778
L + L + + H NP + LVE+V P T+ T++ K +G+ PV
Sbjct: 125 CLLPSKLFSGLAHVKQCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIGQSPV 184
Query: 779 S-CKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFELL 937
K+ GF++NRL + EA RL E S D+D M G G +GP E +
Sbjct: 185 RVLKEIDGFVLNRLQYAVISEAWRLVEEEIVSPSDLDLVMSDGLGMRYAFIGPLETM 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,119,293
Number of extensions: 1440756
Number of successful extensions: 4268
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4261
Number of HSP's successfully gapped: 4
Length of query: 598
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 491
Effective length of database: 12,403,707
Effective search space: 6090220137
Effective search space used: 6090220137
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 586 e-167
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 155 7e-38
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 125 1e-28
Alignment gi|XP_003132612.2| PREDICTED: peroxisomal bifunctional enzyme-l... 109 6e-24
Alignment gi|NP_999046.1| lambda-crystallin homolog [Sus scrofa]. 91 3e-18
>ref|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Sus
scrofa].
Length = 314
Score = 586 bits (1510), Expect = e-167
Identities = 302/314 (96%), Positives = 302/314 (96%)
Frame = +2
Query: 152 MAFATRQLVRXXXXXXXXXXXXKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 331
MAFATRQLVR KKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE
Sbjct: 1 MAFATRQLVRSLSSSSTAAASAKKILVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 60
Query: 332 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 511
DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI
Sbjct: 61 DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAI 120
Query: 512 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 691
VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL
Sbjct: 121 VENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKL 180
Query: 692 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 871
VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS
Sbjct: 181 VEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDAS 240
Query: 872 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 1051
KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN
Sbjct: 241 KEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAEN 300
Query: 1052 KFGKKTGEGFYKYK 1093
KFGKKTGEGFYKYK
Sbjct: 301 KFGKKTGEGFYKYK 314
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 155 bits (392), Expect = 7e-38
Identities = 89/290 (30%), Positives = 156/290 (53%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 409
VKH+ ++G GLMGAGIAQV+ +L D + L + ++ + + L +KK
Sbjct: 361 VKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 415
Query: 410 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 589
A F +L S T D+V+EA+ E L +K ++ K ++ +H +FAS
Sbjct: 416 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 474
Query: 590 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 769
NTS+L I+ +A + R ++ G+H+F+PV M+L+E++ T TS+ + S V+ GK
Sbjct: 475 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAVEVGLKQGK 534
Query: 770 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 949
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 535 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-SLTTSFGFPVGAATLMDEVG 592
Query: 950 LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK*G 1099
+D K + + ++ + + +++++ G+K+G+GFY Y+ G
Sbjct: 593 MDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFYVYQEG 642
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 125 bits (313), Expect = 1e-28
Identities = 94/303 (31%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Frame = +2
Query: 230 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAEN 406
+ V ++G G MG GIA A V+ V+ + L + K I L K A K + + +
Sbjct: 297 ISSVGILGLGTMGRGIAVSFAKAKIPVIAVEPDKKQLENANKIITSLLEKEASKMQQSGH 356
Query: 407 PKAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFA 586
P +G + ++TS S V DLV+EA+ E + +K ++F L
Sbjct: 357 PWSGPK------PRLTTSMKELSGV---DLVIEAVFEEMNLKKQVFAELSAVCKPQAFLC 407
Query: 587 SNTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLG 766
+NTS+L I +A++T R G HFF+P +MKL+EV+ + +S T+ ++++ SK +
Sbjct: 408 TNTSALDIDEIASSTNRPHLVIGTHFFSPAHVMKLLEVIPSRYSSPTTIATVMNLSKKIK 467
Query: 767 KHPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYV 946
K V + GF+ NR+L PY + L E G + E+ID ++ G+ MGPF + D
Sbjct: 468 KIGVVVGNCFGFVGNRMLKPYYDQTYFLLEDG-SMPEEIDQVLE-EFGFRMGPFRVSDLA 525
Query: 947 GLDTTKFIIDGWHEMDSQ---NPLFQPS------------PAMNKLVAENKFGKKTGEGF 1081
GLD GW Q P P P + L +FG+KTG+G+
Sbjct: 526 GLDI------GWKSRKGQGLTGPALPPGTSARKRGNQRYCPVPDMLCELGRFGQKTGKGW 579
Query: 1082 YKY 1090
Y Y
Sbjct: 580 YLY 582
>ref|XP_003132612.2| PREDICTED: peroxisomal bifunctional enzyme-like [Sus scrofa].
Length = 367
Score = 109 bits (272), Expect = 6e-24
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 16/305 (5%)
Frame = +2
Query: 263 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKK-KFAENPKAGDEFVEKT 439
MG GIA A V+ V+ + L + K I L K A K + + +P +G +
Sbjct: 1 MGRGIAVSFAKAKIPVIAVEPDKKQLENANKIITSLLEKEASKMQQSGHPWSGPK----- 55
Query: 440 LSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSL 619
++TS S V DLV+EA+ E + +K ++F L +NTS+L I +
Sbjct: 56 -PRLTTSMKELSGV---DLVIEAVFEEMNLKKQVFAELSAVCKPQAFLCTNTSALDIDEI 111
Query: 620 ANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPG 799
A++T R G HFF+P +MKL+EV+ + +S T+ ++++ SK + K V + G
Sbjct: 112 ASSTNRPHLVIGTHFFSPAHVMKLLEVIPSRYSSPTTIATVMNLSKKIKKIGVVVGNCFG 171
Query: 800 FIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDG 979
F+ NR+L PY + L E G + E+ID ++ G+ MGPF + D GLD G
Sbjct: 172 FVGNRMLKPYYDQTYFLLEDG-SMPEEIDQVLE-EFGFRMGPFRVSDLAGLDI------G 223
Query: 980 WHEMDSQ---NPLFQPS------------PAMNKLVAENKFGKKTGEGFYKYK*GAASLA 1114
W Q P P P + L +FG+KT E + K +
Sbjct: 224 WKSRKGQGLTGPALPPGTSARKRGNQRYCPVPDMLCELGRFGQKT-ESYSLVKMSPSCHP 282
Query: 1115 PRGSP 1129
+G P
Sbjct: 283 SKGDP 287
>ref|NP_999046.1| lambda-crystallin homolog [Sus scrofa].
Length = 322
Score = 90.5 bits (223), Expect = 3e-18
Identities = 80/275 (29%), Positives = 123/275 (44%), Gaps = 5/275 (1%)
Frame = +2
Query: 239 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAG 418
V V+G GL+G A + A+ G V L D I + G +++RK K G
Sbjct: 12 VAVVGSGLIGRSWAMLFASGGFRVKLYD----IEQQQVTGALDTIRKEMKLLEQSGALKG 67
Query: 419 DEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTS 598
E+ L+ IS +D V T + E + ENL++K +LF +LD+ + + +S++S
Sbjct: 68 SLGAEEQLALISGCSDLREAVEGTVHIQECVPENLELKQQLFAQLDQIVDGNVVLSSSSS 127
Query: 599 SLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPV 778
L + L + H NP + LVE+V P T+ T+ + +G+ PV
Sbjct: 128 CLLPSKLFAGLVHVRQCLVAHPVNPPYHVPLVELVPHPETAPATMARTYALMRQIGQSPV 187
Query: 779 S-CKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFELLDYV 946
K+ GF +NRL + EA RL E S D+D M G G +GP E + ++
Sbjct: 188 RILKEVDGFALNRLQYALIGEAWRLVEARIVSPGDLDLVMSDGLGLRYAFIGPLETM-HL 246
Query: 947 GLDTTKFIIDGWHE-MDSQNPLFQPSPAMNKLVAE 1048
+ D + E M F P P + VAE
Sbjct: 247 NAEGMLSYCDRYREGMKRVLKTFGPIPEFSGAVAE 281
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,183,758
Number of extensions: 1056858
Number of successful extensions: 3239
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3231
Number of HSP's successfully gapped: 5
Length of query: 598
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 493
Effective length of database: 8,729,747
Effective search space: 4303765271
Effective search space used: 4303765271
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002173
(1794 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1524 0.0
Sscrofa_Chr10 84 3e-13
>Sscrofa_Chr08
|| Length = 148491826
Score = 1524 bits (769), Expect = 0.0
Identities = 792/802 (98%)
Strand = Plus / Minus
Query: 977 gggtggcatgaaatggattcacagaaccccctgtttcagcccagcccagccatgaataag 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213683 gggtggcatgaaatggattcacagaaccccctgtttcagcccagcccagccatgaataag 122213624
Query: 1037 ctggtagcggagaataagtttggcaagaagactggagaaggattttacaaatacaaatga 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213623 ctggtagcggagaataagtttggcaagaagactggagaaggattttacaaatacaaatga 122213564
Query: 1097 ggcgcagcttctctggctcctagaggaagccccgtaagcacataccagcagctccccaag 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213563 ggcgcagcttctctggctcctagaggaagccccgtaagcacataccagcagctccccaag 122213504
Query: 1157 tgccctcgggaatgctctttggccagacgttccccacacagcatgatctgttcagtgtgc 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213503 tgccctcgggaatgctctttggccagacgttccccacacagcatgatctgttcagtgtgc 122213444
Query: 1217 attttgattgtaatctatctgaactaattacactagttacagtaatagcagatttctcca 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213443 attttgattgtaatctatctgaactaattacactagttacagtaatagcagatttctcca 122213384
Query: 1277 ttgagaacaaattctcttagtctgttcatttctgtgtattttcccaaaagctttaacacc 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213383 ttgagaacaaattctcttagtctgttcatttctgtgtattttcccaaaagctttaacacc 122213324
Query: 1337 cttggtgccttggaacgaacatttcttccgaaccttcgtttttgtaacgttgcctgaagt 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213323 cttggtgccttggaacgaacatttcttccgaaccttcgtttttgtaacgttgcctgaagt 122213264
Query: 1397 cactcacttgtaaagggaagacacttcctgaaagcatctcatgttcattgctgccacacg 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213263 cactcacttgtaaagggaagacacttcctgaaagcatctcatgttcattgctgccacacg 122213204
Query: 1457 gcagagtctcaagccactgacacgtcatggtgtgtctgaagggctgtgcgagcagcacct 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213203 gcagagtctcaagccactgacacgtcatggtgtgtctgaagggctgtgcgagcagcacct 122213144
Query: 1517 gcattgcctttaccagaatgttagctgcctgcagctcccagccttacgccacgttttggg 1576
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122213143 gcatcgcctttaccagaatgttcgctgcctgcagctcccagccttacgccacgttttggg 122213084
Query: 1577 tacgatgtcagctgttgggtctcgattcaactcatcctcaagacactgcttctgggtcag 1636
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213083 tacgatgtcagctgtcgggtctcgattcaactcatcctcaagacactgcttctgggtcag 122213024
Query: 1637 tgggaatatccccatgtgcttggttgtgggaagaggtttcactcacgtccaaaatctgca 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122213023 tgggaatatccccatgtgcttggttgtgggaagaggtttcactcacgtccaaaatctgca 122212964
Query: 1697 tagtgtccgtccatctctctcnnnnnnncatgagaaatcattgctacaatttgagtctaa 1756
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 122212963 tagtgtccgtccatctctctctttttttcatgagaaatcattgctacaatttgagtctaa 122212904
Query: 1757 taaaatgcagtctttaaatctg 1778
||||||||||||||||||||||
Sbjct: 122212903 taaaatgcagtctttaaatctg 122212882
Score = 565 bits (285), Expect = e-158
Identities = 285/285 (100%)
Strand = Plus / Minus
Query: 1 gtcgtcggagacgcacagccacgcccagggcgcgcggaccttgggtttcctgggtgtcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265894 gtcgtcggagacgcacagccacgcccagggcgcgcggaccttgggtttcctgggtgtcca 122265835
Query: 61 agcccaggggtcgtcttgctactcttgcctcagccgcctgcggttaccttctccgcccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265834 agcccaggggtcgtcttgctactcttgcctcagccgcctgcggttaccttctccgcccgg 122265775
Query: 121 tcttgttgctgtcgccgccttcgtctgcaccatggctttcgcaaccaggcagctcgtgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265774 tcttgttgctgtcgccgccttcgtctgcaccatggctttcgcaaccaggcagctcgtgcg 122265715
Query: 181 ctccttgtcctcctcgtccaccgccgcggcctcggcgaagaaaatcctcgtcaagcacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265714 ctccttgtcctcctcgtccaccgccgcggcctcggcgaagaaaatcctcgtcaagcacgt 122265655
Query: 241 gacggtcatcggcggcgggctgatgggcgcaggcattgcccaggt 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265654 gacggtcatcggcggcgggctgatgggcgcaggcattgcccaggt 122265610
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 411 aggctggcgatgaattcgtggagaagaccctgagcagcatatccaccagcacggacgcag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122235261 aggctggcgatgaattcgtggagaagaccctgagcagcatatccaccagcacggacgcag 122235202
Query: 471 catccgtggtccacagcacagacctggtggtggaggccatcgtggagaacctgaaggtga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122235201 catccgtggtccacagcacagacctggtggtggaggccatcgtggagaacctgaaggtga 122235142
Query: 531 agagcgagctcttcaagaggctggacaagtttgctgctga 570
||||||||||||||||||||||||||||||||||||||||
Sbjct: 122235141 agagcgagctcttcaagaggctggacaagtttgctgctga 122235102
Score = 262 bits (132), Expect = 6e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 282 aggttgctgcagcaactggccacacggtagtgttggtagatcaaacagaggacatcctag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122242396 aggttgctgcagcaactggccacacggtagtgttggtagatcaaacagaggacatcctag 122242337
Query: 342 caaaatctaaaaagggaattgaggaaagccttcggaaagtggccaagaagaagtttgcgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122242336 caaaatctaaaaagggaattgaggaaagccttcggaaagtggccaagaagaagtttgcgg 122242277
Query: 402 aaaaccccaagg 413
||||||||||||
Sbjct: 122242276 aaaaccccaagg 122242265
Score = 258 bits (130), Expect = 9e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 571 acacacaatctttgccagcaacacttcctctttgcagatcacaagcctagccaatgccac 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122231056 acacacaatctttgccagcaacacttcctctttgcagatcacaagcctagccaatgccac 122230997
Query: 631 caccagacaggaccgatttgccgggctccatttcttcaacccagtgcccttgatgaaact 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122230996 caccagacaggaccgatttgccgggctccatttcttcaacccagtgcccttgatgaaact 122230937
Query: 691 tgtggaggtc 700
||||||||||
Sbjct: 122230936 tgtggaggtc 122230927
Score = 238 bits (120), Expect = 9e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 859 aggtgacgcatccaaggaagacattgatactgctatgaagctgggtgctgggtaccccat 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122214742 aggtgacgcatccaaggaagacattgatactgctatgaagctgggtgctgggtaccccat 122214683
Query: 919 gggcccatttgaacttctcgattatgttggactggatactaccaagttcatcatagatgg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122214682 gggcccatttgaacttctcgattatgttggactggatactaccaagttcatcatagatgg 122214623
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 696 aggtcgtcaaaacaccaatgaccagccagaagacattggaatctctggtagacttcagca 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122227543 aggtcgtcaaaacaccaatgaccagccagaagacattggaatctctggtagacttcagca 122227484
Query: 756 aaaccctgggaaagcatcctgtttcttgcaagg 788
|||||||||||||||||||||||||||||||||
Sbjct: 122227483 aaaccctgggaaagcatcctgtttcttgcaagg 122227451
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 786 aggacactcctgggtttatcgtgaaccgtctcctggtgccgtacctcatagaagcagtca 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122221780 aggacactcctgggtttatcgtgaaccgtctcctggtgccgtacctcatagaagcagtca 122221721
Query: 846 ggctgtacgaacgaggt 862
|||||||||||||||||
Sbjct: 122221720 ggctgtacgaacgaggt 122221704
>Sscrofa_Chr10
|| Length = 79102373
Score = 83.8 bits (42), Expect = 3e-13
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 1729 agaaatcattgctacaatttgagtctaataaaatgcagtctttaaatctg 1778
||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 55412702 agaaatcattgctacaaattgactctaataaaatgcagtctttaaatctg 55412751
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,813,065
Number of extensions: 257
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 9
Length of query: 1794
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1772
Effective length of database: 2,808,408,574
Effective search space: 4976499993128
Effective search space used: 4976499993128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)