Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit be... 681 0.0
Alignment gi|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit be... 338 e-103
>ref|NP_001029811.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
precursor [Bos taurus].
Length = 432
Score = 681 bits (1758), Expect(2) = 0.0
Identities = 347/356 (97%), Positives = 351/356 (98%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MAAPV AQARKLLRDL RPPLLAARSQVVQLT RRWLNLQEYQSKKLMSDNGVKVQRFF
Sbjct: 1 MAAPVGAQARKLLRDLVLRPPLLAARSQVVQLTSRRWLNLQEYQSKKLMSDNGVKVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP+VVGQLAKQM
Sbjct: 61 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPKVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 615
IGYNLATKQTPKEGVKV KVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV
Sbjct: 121 IGYNLATKQTPKEGVKVKKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 180
Query: 616 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 795
AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL+NQAADQIKKLYNLFLKIDATQV
Sbjct: 181 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLKNQAADQIKKLYNLFLKIDATQV 240
Query: 796 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 975
EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAA+YDLKYIGLD
Sbjct: 241 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAARYDLKYIGLD 300
Query: 976 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKV+
Sbjct: 301 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVE 356
Score = 82.8 bits (203), Expect(2) = 0.0
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 356 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 396
>ref|NP_001068961.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Bos
taurus].
Length = 463
Score = 338 bits (867), Expect(2) = e-103
Identities = 176/326 (53%), Positives = 228/326 (69%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
+Q +R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAG
Sbjct: 45 IQHQQQRNLSLHEYLSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAG 104
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 105 GRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPR 164
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS GGV+IE+VAA PE I KE IDI+EGIK QA R+A+
Sbjct: 165 REYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQ 224
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 882
+GF + + AA+ + KLY+ FLK DAT VE+NP E +G V+C DAKINFD N+ +R
Sbjct: 225 KMGFPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 284
Query: 883 QKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPAN 1062
QK IF + D ++ + + +AAK DL YIGLDGNI C VNGAGLAMAT DII L+GG PAN
Sbjct: 285 QKKIFDLQDWTQEDERDKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPAN 344
Query: 1063 FLDLGGGVKESQVYQAFKLLTADPKV 1140
FLD+GGG QV +AFKL+T+D KV
Sbjct: 345 FLDVGGGATVHQVTEAFKLITSDKKV 370
Score = 57.8 bits (138), Expect(2) = e-103
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +3
Query: 1143 AILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
+ILVNIFGGI+ C +IA GI A ++LE+K+P+VVRL+GT
Sbjct: 372 SILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVRLQGT 411
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,069,169
Number of extensions: 1199142
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-... 666 0.0
Alignment gi|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-... 344 e-105
>ref|XP_533767.1| PREDICTED: similar to Succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaG
chain) (SCS-betaG) (GTP-specific succinyl-CoA synthetase
beta subunit) [Canis familiaris].
Length = 432
Score = 666 bits (1719), Expect(2) = 0.0
Identities = 337/356 (94%), Positives = 347/356 (97%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MA+P AA+AR LLR+L RPPLLAAR Q VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF
Sbjct: 1 MASPAAARARTLLRELVLRPPLLAARWQAVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAK+LNAKE VLKAQILAGGRGKGVFSSGLKGGVHLTKDP+VVGQLAKQM
Sbjct: 61 VADTANEALEAAKKLNAKEFVLKAQILAGGRGKGVFSSGLKGGVHLTKDPQVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 615
IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMD+SCNGPVLVGSPQGGVDIEEV
Sbjct: 121 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDQSCNGPVLVGSPQGGVDIEEV 180
Query: 616 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 795
AASNPELIFKEQIDI+EGIKDSQAQRMAENLGFLGPL+NQAADQIKKLYNLFLKIDATQV
Sbjct: 181 AASNPELIFKEQIDIMEGIKDSQAQRMAENLGFLGPLKNQAADQIKKLYNLFLKIDATQV 240
Query: 796 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 975
EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD
Sbjct: 241 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 300
Query: 976 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
GNIACFVNGAGLAMATCDII L GGKPANFLDLGGGVKE+QVYQAFKLLTADPKV+
Sbjct: 301 GNIACFVNGAGLAMATCDIILLKGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVE 356
Score = 79.0 bits (193), Expect(2) = 0.0
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIF GIVNCAIIANGITKAC+ELELKVPLVVRLEGT
Sbjct: 356 EAILVNIFAGIVNCAIIANGITKACQELELKVPLVVRLEGT 396
>ref|XP_542566.2| PREDICTED: similar to Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaA
chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
beta subunit) [Canis familiaris].
Length = 437
Score = 344 bits (882), Expect(2) = e-105
Identities = 179/326 (54%), Positives = 229/326 (70%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
+Q +R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAG
Sbjct: 19 IQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAVAKKLGSKDVVIKAQVLAG 78
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 79 GRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPR 138
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+
Sbjct: 139 REYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQ 198
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 882
+GF + + AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +R
Sbjct: 199 KMGFPSNIVDSAAENMVKLYNLFLKYDATMVEINPMVEDSDGTVLCMDAKINFDSNSAYR 258
Query: 883 QKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPAN 1062
QK IF + D ++ + E AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PAN
Sbjct: 259 QKKIFDLQDWTQEDEREKGAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPAN 318
Query: 1063 FLDLGGGVKESQVYQAFKLLTADPKV 1140
FLD+GGG QV +AFKL+T+D KV
Sbjct: 319 FLDVGGGATVHQVTEAFKLITSDKKV 344
Score = 58.9 bits (141), Expect(2) = e-105
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = +3
Query: 1143 AILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
AILVNIFGGI+ C +IA GI A ++LE+K+P+VVRL+GT
Sbjct: 346 AILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVRLQGT 385
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,180,758
Number of extensions: 1250527
Number of successful extensions: 4137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4118
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit be... 661 0.0
Alignment gi|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta,... 661 0.0
Alignment gi|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta,... 338 e-103
>ref|NP_001171070.1| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
1 precursor [Homo sapiens].
Length = 440
Score = 661 bits (1705), Expect(2) = 0.0
Identities = 337/356 (94%), Positives = 345/356 (96%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MA+PVAAQA KLLR LA RP LAA SQ VQLT RRWLNLQEYQSKKLMSDNGV+VQRFF
Sbjct: 1 MASPVAAQAGKLLRALALRPRFLAAGSQAVQLTSRRWLNLQEYQSKKLMSDNGVRVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVF+SGLKGGVHLTKDP VVGQLAKQM
Sbjct: 61 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPNVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 615
IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV
Sbjct: 121 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 180
Query: 616 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 795
AASNPELIFKEQIDI EGIKDSQAQRMAENLGF+GPL++QAADQI KLYNLFLKIDATQV
Sbjct: 181 AASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQAADQITKLYNLFLKIDATQV 240
Query: 796 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 975
EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD
Sbjct: 241 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 300
Query: 976 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKE+QVYQAFKLLTADPKV+
Sbjct: 301 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVE 356
Score = 82.8 bits (203), Expect(2) = 0.0
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 356 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 396
>ref|NP_003839.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform
2 precursor [Homo sapiens].
Length = 432
Score = 661 bits (1705), Expect(2) = 0.0
Identities = 337/356 (94%), Positives = 345/356 (96%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MA+PVAAQA KLLR LA RP LAA SQ VQLT RRWLNLQEYQSKKLMSDNGV+VQRFF
Sbjct: 1 MASPVAAQAGKLLRALALRPRFLAAGSQAVQLTSRRWLNLQEYQSKKLMSDNGVRVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVF+SGLKGGVHLTKDP VVGQLAKQM
Sbjct: 61 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPNVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 615
IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV
Sbjct: 121 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 180
Query: 616 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 795
AASNPELIFKEQIDI EGIKDSQAQRMAENLGF+GPL++QAADQI KLYNLFLKIDATQV
Sbjct: 181 AASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQAADQITKLYNLFLKIDATQV 240
Query: 796 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 975
EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD
Sbjct: 241 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 300
Query: 976 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKE+QVYQAFKLLTADPKV+
Sbjct: 301 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYQAFKLLTADPKVE 356
Score = 82.8 bits (203), Expect(2) = 0.0
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 356 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 396
>ref|NP_003841.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
precursor [Homo sapiens].
Length = 463
Score = 338 bits (866), Expect(2) = e-103
Identities = 176/326 (53%), Positives = 229/326 (70%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
VQ +R L+L EY S +L+ + GV V + +VA + +EA AK+L +K++V+KAQ+LAG
Sbjct: 45 VQQQQQRNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAG 104
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 105 GRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPR 164
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS GGV+IE+VAA +PE I KE IDI EGIK QA ++A+
Sbjct: 165 REYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQ 224
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 882
+GF + AA+ + KLY+LFLK DAT +E+NP E +G V+C DAKINFD N+ +R
Sbjct: 225 KMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYR 284
Query: 883 QKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPAN 1062
QK IF + D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PAN
Sbjct: 285 QKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPAN 344
Query: 1063 FLDLGGGVKESQVYQAFKLLTADPKV 1140
FLD+GGG QV +AFKL+T+D KV
Sbjct: 345 FLDVGGGATVHQVTEAFKLITSDKKV 370
Score = 58.5 bits (140), Expect(2) = e-103
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = +3
Query: 1143 AILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
AILVNIFGGI+ C +IA GI A ++LE+K+P+VVRL+GT
Sbjct: 372 AILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGT 411
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,249,410
Number of extensions: 1225137
Number of successful extensions: 4055
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4047
Number of HSP's successfully gapped: 6
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta,... 630 0.0
Alignment gi|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta,... 350 e-107
>ref|NP_035637.2| succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
precursor [Mus musculus].
Length = 433
Score = 630 bits (1624), Expect(2) = 0.0
Identities = 324/358 (90%), Positives = 343/358 (95%), Gaps = 2/358 (0%)
Frame = +1
Query: 76 MAAPVA--AQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQR 249
MA+PVA AQA KLLR+ A RP LLA RSQ LTPRRWLNLQEYQSKKLMS++GV+VQR
Sbjct: 1 MASPVAIAAQAGKLLRERALRP-LLAVRSQAGHLTPRRWLNLQEYQSKKLMSEHGVRVQR 59
Query: 250 FFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK 429
FFVA+TA EALEAAKRLNAKEIVLKAQILAGGRGKGVF+SGLKGGVHLTKDP+VVG+LA+
Sbjct: 60 FFVANTAKEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLKGGVHLTKDPKVVGELAQ 119
Query: 430 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIE 609
QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS NGPV+VGSPQGGVDIE
Sbjct: 120 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSHNGPVIVGSPQGGVDIE 179
Query: 610 EVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDAT 789
EVAAS+PELIFKEQIDI EGIKDSQAQRMAENLGFLG L+NQAADQI KLY+LFLKIDAT
Sbjct: 180 EVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLGSLKNQAADQITKLYHLFLKIDAT 239
Query: 790 QVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIG 969
QVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAA+YDLKYIG
Sbjct: 240 QVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAARYDLKYIG 299
Query: 970 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKE+QVY+AFKLLT+DPKV+
Sbjct: 300 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQVYEAFKLLTSDPKVE 357
Score = 82.8 bits (203), Expect(2) = 0.0
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 357 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 397
>ref|NP_035636.1| succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
precursor [Mus musculus].
Length = 463
Score = 350 bits (898), Expect(2) = e-107
Identities = 181/327 (55%), Positives = 234/327 (71%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
VQ +R L+L EY S +L+ + GV V + FVA +++EA AK+L +K++V+KAQ+LAG
Sbjct: 45 VQQQQQRTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAYAIAKKLGSKDVVIKAQVLAG 104
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F+SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 105 GRGKGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPR 164
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS QGGV+IE+VAA NPE I KE IDI+EGIK QA +A+
Sbjct: 165 REYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQ 224
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 882
+GF + + AA+ + KLYNLFLK DAT VE+NP E +G+V+C DAKINFD N+ +R
Sbjct: 225 KMGFPSNIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYR 284
Query: 883 QKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPAN 1062
QK IF + D S+ + + EAA D+ YIGLDG+I C VNGAGLAMAT DII L+GG PAN
Sbjct: 285 QKKIFDLQDWSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPAN 344
Query: 1063 FLDLGGGVKESQVYQAFKLLTADPKVK 1143
FLD+GGG QV +AFKL+T+D KV+
Sbjct: 345 FLDVGGGATVQQVTEAFKLITSDKKVQ 371
Score = 58.2 bits (139), Expect(2) = e-107
Identities = 25/41 (60%), Positives = 35/41 (85%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
+AILVNIFGGI+ C +IA GI A ++LE+++P+VVRL+GT
Sbjct: 371 QAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGT 411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,205,658
Number of extensions: 1025507
Number of successful extensions: 3206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3198
Number of HSP's successfully gapped: 4
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming]... 696 0.0
Alignment gi|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming]... 343 e-105
Alignment gi|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming]... 278 2e-93
Alignment gi|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming]... 216 3e-56
Alignment gi|XP_003358543.1| PREDICTED: succinyl-CoA ligase [GDP-forming]... 146 3e-35
>ref|XP_003132357.2| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
mitochondrial isoform 1 [Sus scrofa].
Length = 432
Score = 696 bits (1797), Expect(2) = 0.0
Identities = 355/356 (99%), Positives = 356/356 (100%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF
Sbjct: 1 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM
Sbjct: 61 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 615
IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV
Sbjct: 121 IGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEV 180
Query: 616 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 795
AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV
Sbjct: 181 AASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQV 240
Query: 796 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 975
EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD
Sbjct: 241 EVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLD 300
Query: 976 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVK 1143
GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKV+
Sbjct: 301 GNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVE 356
Score = 82.8 bits (203), Expect(2) = 0.0
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 356 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 396
>ref|XP_003131022.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
mitochondrial [Sus scrofa].
Length = 463
Score = 343 bits (880), Expect(2) = e-105
Identities = 178/326 (54%), Positives = 230/326 (70%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
+Q +R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAG
Sbjct: 45 IQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAG 104
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 105 GRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPR 164
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+
Sbjct: 165 REYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQ 224
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFR 882
+GF + + AA+ + KLYNLFLK DAT VE+NP E +G V+C DAKINFD N+ +R
Sbjct: 225 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYR 284
Query: 883 QKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPAN 1062
QK IF + D ++ + + +AAK +L YIGLDGNI C VNGAGLAMAT DII L+GG PAN
Sbjct: 285 QKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPAN 344
Query: 1063 FLDLGGGVKESQVYQAFKLLTADPKV 1140
FLD+GGG QV +AFKL+T+D KV
Sbjct: 345 FLDVGGGATVHQVTEAFKLITSDKKV 370
Score = 57.8 bits (138), Expect(2) = e-105
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = +3
Query: 1143 AILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
+ILVNIFGGI+ C +IA GI A ++LE+K+P+VVRL+GT
Sbjct: 372 SILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPIVVRLQGT 411
>ref|XP_003358541.1| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
mitochondrial isoform 2 [Sus scrofa].
Length = 351
Score = 278 bits (712), Expect(2) = 2e-93
Identities = 136/138 (98%), Positives = 138/138 (100%)
Frame = +1
Query: 730 NQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD 909
N+AADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD
Sbjct: 138 NKAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDD 197
Query: 910 KSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK 1089
KSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK
Sbjct: 198 KSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVK 257
Query: 1090 ESQVYQAFKLLTADPKVK 1143
ESQVYQAFKLLTADPKV+
Sbjct: 258 ESQVYQAFKLLTADPKVE 275
Score = 82.8 bits (203), Expect(2) = 2e-93
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +3
Query: 1140 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 1262
EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT
Sbjct: 275 EAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGT 315
Score = 270 bits (689), Expect = 2e-72
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF
Sbjct: 1 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 60
Query: 256 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 435
VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM
Sbjct: 61 VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQM 120
Query: 436 IGYNLATKQTPKEGVKVNK 492
IGYNLATKQTPKEGVKVNK
Sbjct: 121 IGYNLATKQTPKEGVKVNK 139
>ref|XP_003357891.1| PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta,
mitochondrial-like, partial [Sus scrofa].
Length = 267
Score = 216 bits (549), Expect = 3e-56
Identities = 114/222 (51%), Positives = 151/222 (68%)
Frame = +1
Query: 163 VQLTPRRWLNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAG 342
+Q +R L+L EY S +L+ + GV + + VA + +EA AK+L +K++V+KAQ+LAG
Sbjct: 45 IQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAYAIAKKLGSKDVVIKAQVLAG 104
Query: 343 GRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDIS 522
GRGKG F SGLKGGV + PE ++ QMIG L TKQT ++G N+V+V E
Sbjct: 105 GRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPR 164
Query: 523 RETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAE 702
RE Y AI M+RS GPVL+GS QGGV+IE+VAA PE I KE IDI+EGIK QA R+A+
Sbjct: 165 REYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQ 224
Query: 703 NLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEG 828
+GF + + AA+ + KLYNLFLK DAT VE+NP E +G
Sbjct: 225 KMGFPPSIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDG 266
>ref|XP_003358543.1| PREDICTED: succinyl-CoA ligase [GDP-forming] subunit beta,
mitochondrial-like, partial [Sus scrofa].
Length = 75
Score = 146 bits (368), Expect = 3e-35
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +1
Query: 76 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 255
MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF
Sbjct: 1 MAAPVAAQARKLLRDLAFRPPLLAARSQVVQLTPRRWLNLQEYQSKKLMSDNGVKVQRFF 60
Query: 256 VADTANEALEAAKRL 300
VADTANEALEAAKRL
Sbjct: 61 VADTANEALEAAKRL 75
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,031,702
Number of extensions: 773025
Number of successful extensions: 2694
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2689
Number of HSP's successfully gapped: 9
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002177
(1264 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 325 3e-86
Sscrofa_Chr09 105 6e-20
>Sscrofa_Chr13
|| Length = 218635234
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 831 agttgtctgttttgatgccaagataaactttgatgacaatgcagaattccgacagaagga 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875297 agttgtctgttttgatgccaagataaactttgatgacaatgcagaattccgacagaagga 53875238
Query: 891 tatatttgctatggacgacaaatcagagaatgagcccattgaaaatgaagctgcgaagta 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875237 tatatttgctatggacgacaaatcagagaatgagcccattgaaaatgaagctgcgaagta 53875178
Query: 951 tgatctaaaatacataggactggatgggaacatcgcctgctttg 994
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53875177 tgatctaaaatacataggactggatgggaacatcgcctgctttg 53875134
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 491 aggtgatggtagctgaagcattggacatttccagggaaacctacctggccattcttatgg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53892858 aggtgatggtagctgaagcattggacatttccagggaaacctacctggccattcttatgg 53892799
Query: 551 accggtcttgcaatggtcccgtattggtgggcagccctcagggaggtgtcgacattgaag 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53892798 accggtcttgcaatggtcccgtattggtgggcagccctcagggaggtgtcgacattgaag 53892739
Query: 611 aagtggcagcttcaaacccagaacttatttttaagg 646
||||||||||||||||||||||||||||||||||||
Sbjct: 53892738 aagtggcagcttcaaacccagaacttatttttaagg 53892703
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 994 gtaaatggggctggacttgccatggctacctgtgacatcattttcttgaatggtgggaag 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53872708 gtaaatggggctggacttgccatggctacctgtgacatcattttcttgaatggtgggaag 53872649
Query: 1054 ccagccaacttcttggatcttggaggtggtgtaaaggaatctcaggtttatcaagcattc 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53872648 ccagccaacttcttggatcttggaggtggtgtaaaggaatctcaggtttatcaagcattc 53872589
Query: 1114 aaactgctcacagccgatcctaaggt 1139
||||||||||||||||||||||||||
Sbjct: 53872588 aaactgctcacagccgatcctaaggt 53872563
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 158 aggtggttcaattaacccccagaagatggctgaacctgcaggaataccagagcaagaaac 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975685 aggtggttcaattaacccccagaagatggctgaacctgcaggaataccagagcaagaaac 53975626
Query: 218 tgatgtctgacaatggagtgaaagttcaaagattttttgtagcagacactgccaatgaag 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975625 tgatgtctgacaatggagtgaaagttcaaagattttttgtagcagacactgccaatgaag 53975566
Query: 278 ctctcgaggctgctaagagactaa 301
||||||||||||||||||||||||
Sbjct: 53975565 ctctcgaggctgctaagagactaa 53975542
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1139 tgaagccatcctagtgaatatttttggtggaatcgtcaactgtgccatcattgccaatgg 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53693274 tgaagccatcctagtgaatatttttggtggaatcgtcaactgtgccatcattgccaatgg 53693215
Query: 1199 gatcaccaaagcatgccgggagctggaactcaaggtgcctctggtggtccggcttgaagg 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53693214 gatcaccaaagcatgccgggagctggaactcaaggtgcctctggtggtccggcttgaagg 53693155
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 55 acgccgggtttcctggttaagatggcggcccccgtggcagctcaggcccggaaacttctg 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54030511 acgccgggtttcctggttaagatggcggcccccgtggcagctcaggcccggaaacttctg 54030452
Query: 115 agagacctggcgttccggcccccgctcttggcggctaggtcccaggtg 162
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54030451 agagacctggcgttccggcccccgctcttggcggctaggtcccaggtg 54030404
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 302 atgcaaaagaaattgttttaaaagcccagatcttagctggaggaagaggaaaaggtgtct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53900565 atgcaaaagaaattgttttaaaagcccagatcttagctggaggaagaggaaaaggtgtct 53900506
Query: 362 tcagtagcggtttgaaaggaggtgttcatttaacaaaaga 401
||||||||||||||||||||||||||||||||||||||||
Sbjct: 53900505 tcagtagcggtttgaaaggaggtgttcatttaacaaaaga 53900466
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 734 aggctgcagatcaaattaagaagctttataatctcttcctgaaaatcgatgctactcagg 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53884650 aggctgcagatcaaattaagaagctttataatctcttcctgaaaatcgatgctactcagg 53884591
Query: 794 tggaagtgaatccctttggtgaaactccagaaggacaag 832
|||||||||||||||||||||||||||||||||||||||
Sbjct: 53884590 tggaagtgaatccctttggtgaaactccagaaggacaag 53884552
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 644 aggagcaaattgacattattgaaggaataaaggacagccaggctcagcggatggcagaaa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53890905 aggagcaaattgacattattgaaggaataaaggacagccaggctcagcggatggcagaaa 53890846
Query: 704 atctaggcttcctcgggcctttgcaaaaccagg 736
|||||||||||||||||||||||||||||||||
Sbjct: 53890845 atctaggcttcctcgggcctttgcaaaaccagg 53890813
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 402 ccctgaagttgtgggtcagttggctaaacagatgattgggtataatctagcaacaaaaca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53899557 ccctgaagttgtgggtcagttggctaaacagatgattgggtataatctagcaacaaaaca 53899498
Query: 462 aactccaaaagaaggtgtgaaagttaacaaggt 494
|||||||||||||||||||||||||||||||||
Sbjct: 53899497 aactccaaaagaaggtgtgaaagttaacaaggt 53899465
>Sscrofa_Chr09
|| Length = 153670197
Score = 105 bits (53), Expect = 6e-20
Identities = 62/65 (95%)
Strand = Plus / Minus
Query: 806 cctttggtgaaactccagaaggacaagttgtctgttttgatgccaagataaactttgatg 865
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
Sbjct: 40180791 cctttggtgaaactccagaaggacaaggtgtctgttttcatgccaagataaactttgagg 40180732
Query: 866 acaat 870
|||||
Sbjct: 40180731 acaat 40180727
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,152,738
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 11
Length of query: 1264
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1243
Effective length of database: 2,808,413,156
Effective search space: 3490857552908
Effective search space used: 3490857552908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)