Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013022.1| squalene synthase [Bos taurus]. 809 0.0
>ref|NP_001013022.1| squalene synthase [Bos taurus].
Length = 417
Score = 809 bits (2090), Expect = 0.0
Identities = 395/417 (94%), Positives = 410/417 (98%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKM+QDSLSSSLKTCYKYLNQTSRSFAAVIQA
Sbjct: 1 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMRHAVCIFYLVLRALDTLEDDMTISIE+K+PLLHNFH +LYE DWRFTESKEKDRQ
Sbjct: 61 LDGEMRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VIVDVC+KMGFGMAEFL+K VTSEREWDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASELEDPL+GEDTERANSMGLFLQKTNIIRDYLEDQ+EGREFWPQE WSKYV
Sbjct: 181 IGLSRLFSASELEDPLIGEDTERANSMGLFLQKTNIIRDYLEDQREGREFWPQETWSKYV 240
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
KKLGDFAKPEN+DLAVQCLNEL+T+TLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL
Sbjct: 241 KKLGDFAKPENIDLAVQCLNELITNTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 300
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIP+SDP S KT+
Sbjct: 301 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTQ 360
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQL+SRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
Sbjct: 361 QIISTIRTQNLPNCQLVSRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 80,144,469
Number of extensions: 2294870
Number of successful extensions: 8824
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8804
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,074,782
Effective search space: 7628531844
Effective search space used: 7628531844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534557.2| PREDICTED: similar to Farnesyl-diphosphate farn... 792 0.0
Alignment gi|XP_856603.1| PREDICTED: similar to Farnesyl-diphosphate farn... 702 0.0
Alignment gi|XP_856645.1| PREDICTED: similar to Farnesyl-diphosphate farn... 628 e-180
>ref|XP_534557.2| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 1 [Canis familiaris].
Length = 417
Score = 792 bits (2045), Expect = 0.0
Identities = 386/417 (92%), Positives = 404/417 (96%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLG PEEFYNLLRFQMGGRRKVIPKM+QDSLSSSLKTCYKYLNQTSRSFAAVI+A
Sbjct: 1 MEFVKCLGRPEEFYNLLRFQMGGRRKVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIEA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMRHAVCIFYLVLRALDTLEDDMTIS+EKK+PLLHNFH +LYE DWR+ ESKEKDRQ
Sbjct: 61 LDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSYLYEPDWRYMESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGFGMAEFL+KHVTSE+EWDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKHVTSEQEWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASELEDPLVGED E ANSMGLFLQKTNIIRDYLEDQ+EGREFWPQEVWSKYV
Sbjct: 181 IGLSRLFSASELEDPLVGEDIECANSMGLFLQKTNIIRDYLEDQREGREFWPQEVWSKYV 240
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
KKLGDFAKP+N+D AVQCLNEL+T+ LHHIP VITYLSRLRNQS+FNFCAIPQVMAIATL
Sbjct: 241 KKLGDFAKPQNIDSAVQCLNELITNALHHIPHVITYLSRLRNQSVFNFCAIPQVMAIATL 300
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKG+VKIRKGQAVTLMMDATNMPAVKAII+QYMEEIYHRIP SDP S KTR
Sbjct: 301 AACYNNQQVFKGIVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPSSDPSSGKTR 360
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
Sbjct: 361 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
>ref|XP_856603.1| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 3 [Canis familiaris].
Length = 385
Score = 702 bits (1811), Expect = 0.0
Identities = 353/417 (84%), Positives = 369/417 (88%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLG PEEFYNLLRFQMGGRRKVIPKM+QDSLSSSLKTCYKYLNQTSRSFAAVI+A
Sbjct: 1 MEFVKCLGRPEEFYNLLRFQMGGRRKVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIEA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMRHAVCIFYLVLRALDTLEDDMTIS+EKK+PLLHNFH +LYE DWR+ ESKEKDRQ
Sbjct: 61 LDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSYLYEPDWRYMESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGFGMAEFL+KHVTSE+EWDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKHVTSEQEWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASELEDPLVGED E ANSMGLFLQKTN
Sbjct: 181 IGLSRLFSASELEDPLVGEDIECANSMGLFLQKTNY------------------------ 216
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
N+D AVQCLNEL+T+ LHHIP VITYLSRLRNQS+FNFCAIPQVMAIATL
Sbjct: 217 --------DGNIDSAVQCLNELITNALHHIPHVITYLSRLRNQSVFNFCAIPQVMAIATL 268
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKG+VKIRKGQAVTLMMDATNMPAVKAII+QYMEEIYHRIP SDP S KTR
Sbjct: 269 AACYNNQQVFKGIVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPSSDPSSGKTR 328
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
Sbjct: 329 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 385
>ref|XP_856645.1| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 4 [Canis familiaris].
Length = 358
Score = 628 bits (1619), Expect = e-180
Identities = 323/417 (77%), Positives = 340/417 (81%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLG PEEFYNLLRFQMGGRRKVIPKM+QDSLSSSLKTCYKYLNQTSRSFAAVI+A
Sbjct: 1 MEFVKCLGRPEEFYNLLRFQMGGRRKVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIEA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMRHAVCIFYLVLRALDTLEDDMTIS+EKK+PLLHNFH +LYE DWR+ ESKEKDRQ
Sbjct: 61 LDGEMRHAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSYLYEPDWRYMESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGFGMAEFL+KHVTSE+EWDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKHVTSEQEWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASELEDPLVGED E ANSMGLFLQKTNIIRDYLEDQ+EGREFWPQEV +
Sbjct: 181 IGLSRLFSASELEDPLVGEDIECANSMGLFLQKTNIIRDYLEDQREGREFWPQEVMA--- 237
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
+ T + NQ +F
Sbjct: 238 --------------------------------IATLAACYNNQQVF-------------- 251
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
KG+VKIRKGQAVTLMMDATNMPAVKAII+QYMEEIYHRIP SDP S KTR
Sbjct: 252 ----------KGIVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPSSDPSSGKTR 301
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
Sbjct: 302 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 83,647,588
Number of extensions: 2379498
Number of successful extensions: 9408
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9389
Number of HSP's successfully gapped: 5
Length of query: 651
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 542
Effective length of database: 15,240,880
Effective search space: 8260556960
Effective search space used: 8260556960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004453.3| squalene synthase [Homo sapiens]. 789 0.0
>ref|NP_004453.3| squalene synthase [Homo sapiens].
Length = 417
Score = 789 bits (2037), Expect = 0.0
Identities = 382/417 (91%), Positives = 405/417 (97%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLGHPEEFYNL+RF++GG+RKV+PKM+QDSLSSSLKTCYKYLNQTSRSFAAVIQA
Sbjct: 1 MEFVKCLGHPEEFYNLVRFRIGGKRKVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMR+AVCIFYLVLRALDTLEDDMTIS+EKK+PLLHNFH LY+ DWRF ESKEKDRQ
Sbjct: 61 LDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VI D+CR+MG GMAEFL+KHVTSE+EWDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASE EDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQ GREFWPQEVWS+YV
Sbjct: 181 IGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYV 240
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
KKLGDFAKPEN+DLAVQCLNEL+T+ LHHIPDVITYLSRLRNQS+FNFCAIPQVMAIATL
Sbjct: 241 KKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL 300
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKG VKIRKGQAVTLMMDATNMPAVKAII+QYMEEIYHRIPDSDP S+KTR
Sbjct: 301 AACYNNQQVFKGAVKIRKGQAVTLMMDATNMPAVKAIIYQYMEEIYHRIPDSDPSSSKTR 360
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYL+TLSQVTEDYVQTGEH
Sbjct: 361 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTGEH 417
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 82,112,510
Number of extensions: 2335187
Number of successful extensions: 8712
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8688
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 542
Effective length of database: 14,704,088
Effective search space: 7969615696
Effective search space used: 7969615696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034321.2| squalene synthase [Mus musculus]. 746 0.0
>ref|NP_034321.2| squalene synthase [Mus musculus].
Length = 416
Score = 746 bits (1925), Expect = 0.0
Identities = 359/413 (86%), Positives = 394/413 (95%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLGHPEEFYNLLRF+MGGRR IPKM+QDSLSSSLKTCYKYLNQTSRSFAAVIQA
Sbjct: 1 MEFVKCLGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDG++RHA+C+FYLVLRALDT+EDDM+IS+EKKIPLL NFH LY+ +WRFTESKEKDRQ
Sbjct: 61 LDGDIRHAICVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTI+LEFRNLAEKYQ VI D+C +MG GMAEF++K VTS+++WDKYCHYVAGLVG
Sbjct: 121 VLEDFPTISLEFRNLAEKYQTVIDDICHRMGCGMAEFVDKDVTSKQDWDKYCHYVAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASE EDP+VGED E ANSMGLFLQKTNIIRDYLEDQQEGR+FWPQEVW +Y+
Sbjct: 181 IGLSRLFSASEFEDPIVGEDIECANSMGLFLQKTNIIRDYLEDQQEGRKFWPQEVWGRYI 240
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
KKL DFAKPENVD+AVQCLNEL+T+TL HIPDV+TYLSRLRNQS+FNFCAIPQVMAIATL
Sbjct: 241 KKLEDFAKPENVDVAVQCLNELITNTLQHIPDVLTYLSRLRNQSVFNFCAIPQVMAIATL 300
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAII+QY+EEIYHRIP+SDP S+KT+
Sbjct: 301 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIYQYIEEIYHRIPNSDPSSSKTK 360
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQ 1342
Q+IS IRTQNLPNCQLISRSHYSPIYLSF+MLLAALSWQYLSTLSQVTEDYVQ
Sbjct: 361 QVISKIRTQNLPNCQLISRSHYSPIYLSFIMLLAALSWQYLSTLSQVTEDYVQ 413
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 69,590,560
Number of extensions: 1955909
Number of successful extensions: 7001
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6993
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 543
Effective length of database: 12,373,671
Effective search space: 6718903353
Effective search space used: 6718903353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161120.1| squalene synthase [Sus scrofa]. 840 0.0
>ref|NP_001161120.1| squalene synthase [Sus scrofa].
Length = 417
Score = 840 bits (2170), Expect = 0.0
Identities = 416/417 (99%), Positives = 416/417 (99%)
Frame = +2
Query: 104 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 283
MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA
Sbjct: 1 MEFVKCLGHPEEFYNLLRFQMGGRRKVIPKMNQDSLSSSLKTCYKYLNQTSRSFAAVIQA 60
Query: 284 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 463
LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ
Sbjct: 61 LDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKIPLLHNFHLHLYESDWRFTESKEKDRQ 120
Query: 464 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYVAGLVG 643
VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHY AGLVG
Sbjct: 121 VLEDFPTIALEFRNLAEKYQVVIVDVCRKMGFGMAEFLNKHVTSEREWDKYCHYDAGLVG 180
Query: 644 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 823
IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV
Sbjct: 181 IGLSRLFSASELEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWSKYV 240
Query: 824 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 1003
KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL
Sbjct: 241 KKLGDFAKPENVDLAVQCLNELVTSTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATL 300
Query: 1004 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 1183
AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR
Sbjct: 301 AACYNNQQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPDSDPYSAKTR 360
Query: 1184 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 1354
QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH
Sbjct: 361 QIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,636,904
Number of extensions: 1476501
Number of successful extensions: 5450
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5437
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 546
Effective length of database: 8,729,747
Effective search space: 4766441862
Effective search space used: 4766441862
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002179
(1954 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1580 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1580 bits (797), Expect = 0.0
Identities = 803/805 (99%)
Strand = Plus / Plus
Query: 1134 agatttatcacagaatccccgactcggacccttattcggccaaaacaaggcagatcatct 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198601 agatttatcacagaatccccgactcggacccttattcggccaaaacaaggcagatcatct 16198660
Query: 1194 ccaccatcaggacacagaatcttcccaattgtcagctgatctcccgaagccactactcac 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198661 ccaccatcaggacacagaatcttcccaattgtcagctgatctcccgaagccactactcac 16198720
Query: 1254 ccatttacctgtcattcgtcatgctgctggcggccctgagctggcagtatctgagcaccc 1313
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16198721 ccatttacctgtcattcgtcatgctgctggcggccctgagctggcagtacctgagcaccc 16198780
Query: 1314 tgtcgcaggtcacagaggactacgttcagaccggggagcactgaccgggggctggggact 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198781 tgtcgcaggtcacagaggactacgttcagaccggggagcactgaccgggggctggggact 16198840
Query: 1374 gagggcgccaggaccaccgacctcttcagggatggatgtgggcgtccaccctcctcactc 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198841 gagggcgccaggaccaccgacctcttcagggatggatgtgggcgtccaccctcctcactc 16198900
Query: 1434 ctgcaacaactcatgggcctggccctgtagaagctgtgctgtgggattaagaagattcaa 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198901 ctgcaacaactcatgggcctggccctgtagaagctgtgctgtgggattaagaagattcaa 16198960
Query: 1494 gggaaaggaccctttggctctggctgtgtgggggctgcaggttggagagtggctgcttct 1553
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 16198961 gggaaaggaccctttggctctggctgtgtgggggctgcaggtcggagagtggctgcttct 16199020
Query: 1554 ggaactctggggagatggctcttagtgtgaacacagctggaattataattaaatgtattt 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199021 ggaactctggggagatggctcttagtgtgaacacagctggaattataattaaatgtattt 16199080
Query: 1614 aatttgaagcatcttttgaatgcctatcctagtagaatgcaaagtagattttcttccttg 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199081 aatttgaagcatcttttgaatgcctatcctagtagaatgcaaagtagattttcttccttg 16199140
Query: 1674 ttggggtcctgtttttctcatcattttgtttcctccagtggacttgaatgtggtaggtgg 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199141 ttggggtcctgtttttctcatcattttgtttcctccagtggacttgaatgtggtaggtgg 16199200
Query: 1734 gaatgtggaaattccaggaaatatccccatgtttgctaagaatgcagactgctttctgca 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199201 gaatgtggaaattccaggaaatatccccatgtttgctaagaatgcagactgctttctgca 16199260
Query: 1794 catgggggctaggaagaaactgctgggtggtggtggcatcgtttcctcgtgtaaagaaaa 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199261 catgggggctaggaagaaactgctgggtggtggtggcatcgtttcctcgtgtaaagaaaa 16199320
Query: 1854 ggagcttaggtttcagaagaaaatggcaggattgcctttggccctatcatttttgagatt 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16199321 ggagcttaggtttcagaagaaaatggcaggattgcctttggccctatcatttttgagatt 16199380
Query: 1914 tttgtaataaaggactgaattactc 1938
|||||||||||||||||||||||||
Sbjct: 16199381 tttgtaataaaggactgaattactc 16199405
Score = 391 bits (197), Expect = e-105
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 7 ctccttcgcttaatgcttggttaagtgcggaccggtgccagcccgaggtatcctcgaggt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16164867 ctccttcgcttaatgcttggttaagtgcggaccggtgccagcccgaggtatcctcgaggt 16164926
Query: 67 gagaccagatttcggatagttggccgctgccagcagcatggagttcgtgaagtgcctggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16164927 gagaccagatttcggatagttggccgctgccagcagcatggagttcgtgaagtgcctggg 16164986
Query: 127 gcaccccgaggagttctacaatctgctgcgcttccagatggggggccggcggaaggtgat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16164987 gcaccccgaggagttctacaatctgctgcgcttccagatggggggccggcggaaggtgat 16165046
Query: 187 acccaagatgaatcagg 203
|||||||||||||||||
Sbjct: 16165047 acccaagatgaatcagg 16165063
Score = 381 bits (192), Expect = e-102
Identities = 195/196 (99%)
Strand = Plus / Plus
Query: 612 agtactgtcactacgttgctgggctggtgggaattggcctttcccgtctattctcggcct 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181301 agtactgtcactacgttgctgggctggtgggaattggcctttcccgtctattctcggcct 16181360
Query: 672 cagagttagaagatcccttggtgggtgaagacacagagcgtgccaactccatgggcctgt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181361 cagagttagaagatcccttggtgggtgaagacacagagcgtgccaactccatgggcctgt 16181420
Query: 732 tcctgcagaaaacaaacatcatccgtgattatctggaagaccagcaagaaggaagagagt 791
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 16181421 tcctgcagaaaacaaacatcatccgtgattatctggaagatcagcaagaaggaagagagt 16181480
Query: 792 tttggcctcaagaggt 807
||||||||||||||||
Sbjct: 16181481 tttggcctcaagaggt 16181496
Score = 367 bits (185), Expect = 2e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 300 gccatgcagtgtgcatattttatctggttctccgagctctggacactctggaagatgaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173205 gccatgcagtgtgcatattttatctggttctccgagctctggacactctggaagatgaca 16173264
Query: 360 tgaccatcagtatagagaagaagatccccctgttacacaacttccacttgcacctttatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173265 tgaccatcagtatagagaagaagatccccctgttacacaacttccacttgcacctttatg 16173324
Query: 420 agtctgactggcggttcactgagagcaaagagaaggaccgacaagtcctggaggactttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173325 agtctgactggcggttcactgagagcaaagagaaggaccgacaagtcctggaggactttc 16173384
Query: 480 caacg 484
|||||
Sbjct: 16173385 caacg 16173389
Score = 359 bits (181), Expect = 4e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 804 aggtttggagcaagtatgttaagaagttgggtgactttgcaaagccagagaacgtggact 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187381 aggtttggagcaagtatgttaagaagttgggtgactttgcaaagccagagaacgtggact 16187440
Query: 864 tggccgtgcagtgcctgaacgagctagtcaccagtacactgcaccacatccccgacgtca 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187441 tggccgtgcagtgcctgaacgagctagtcaccagtacactgcaccacatccccgacgtca 16187500
Query: 924 tcacgtacctttcacgacttagaaaccagagcatatttaacttctgtgctatcccacagg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187501 tcacgtacctttcacgacttagaaaccagagcatatttaacttctgtgctatcccacagg 16187560
Query: 984 t 984
|
Sbjct: 16187561 t 16187561
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 981 aggtcatggccattgctactttggctgcctgttataataatcagcaggtgttcaaagggg 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190378 aggtcatggccattgctactttggctgcctgttataataatcagcaggtgttcaaagggg 16190437
Query: 1041 tggtgaagattcgaaaagggcaagcagtcaccctgatgatggatgccaccaacatgccag 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190438 tggtgaagattcgaaaagggcaagcagtcaccctgatgatggatgccaccaacatgccag 16190497
Query: 1101 ctgtcaaagccataatacaccagtacatggaagag 1135
|||||||||||||||||||||||||||||||||||
Sbjct: 16190498 ctgtcaaagccataatacaccagtacatggaagag 16190532
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 484 gattgccctcgagtttagaaatctggctgagaaatatcaagtggtgatagttgacgtttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16177974 gattgccctcgagtttagaaatctggctgagaaatatcaagtggtgatagttgacgtttg 16178033
Query: 544 ccggaagatgggattcgggatggcagagtttttgaataagcacgtgacatcagaacggga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16178034 ccggaagatgggattcgggatggcagagtttttgaataagcacgtgacatcagaacggga 16178093
Query: 604 gtgggacaag 613
||||||||||
Sbjct: 16178094 gtgggacaag 16178103
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 200 caggactcgctcagcagcagtttgaaaacttgctacaagtatctgaatcagaccagtcgc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16172104 caggactcgctcagcagcagtttgaaaacttgctacaagtatctgaatcagaccagtcgc 16172163
Query: 260 agtttcgcagccgttatccaggccctggatggggaaatgcg 300
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 16172164 agtttcgcagccgttatccaggccctggatggggaaatgcg 16172204
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,309,433
Number of extensions: 366
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 8
Length of query: 1954
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1932
Effective length of database: 2,808,408,574
Effective search space: 5425845364968
Effective search space used: 5425845364968
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)