Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013022.1| squalene synthase [Bos taurus]. 632 0.0
>ref|NP_001013022.1| squalene synthase [Bos taurus].
Length = 417
Score = 632 bits (1630), Expect(2) = 0.0
Identities = 308/346 (89%), Positives = 329/346 (95%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIE+
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIER 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
K+PLLHNFH +LYE DWRFTESKEKDRQVLEDFPTI+LEFRNLAEKYQ VIVDVC+KMGF
Sbjct: 93 KVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDVCQKMGF 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFL+K VTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPL+GEDTERANSMGLFLQ
Sbjct: 153 GMAEFLDKRVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLIGEDTERANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQ+EGREFWPQE WSKYVKKLGDFAKPEN+DLAVQCLNEL+T+TLHHIPD
Sbjct: 213 KTNIIRDYLEDQREGREFWPQETWSKYVKKLGDFAKPENIDLAVQCLNELITNTLHHIPD 272
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
VITYLSRLRNQSIFNFCAIPQVM IATLAACYNNQQ F+GV KI KG AVTLMMDAT+MP
Sbjct: 273 VITYLSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMP 332
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIP+SDP S +T++IISTIR NLPNCQL+S
Sbjct: 333 AVKAIIHQYMEEIYHRIPNSDPCSTKTQQIISTIRTQNLPNCQLVS 378
Score = 63.5 bits (153), Expect(2) = 0.0
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED V TGEH
Sbjct: 380 SHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,095,424
Number of extensions: 2292814
Number of successful extensions: 11271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11203
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 446
Effective length of database: 14,140,958
Effective search space: 6306867268
Effective search space used: 6306867268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534557.2| PREDICTED: similar to Farnesyl-diphosphate farn... 622 0.0
Alignment gi|XP_856603.1| PREDICTED: similar to Farnesyl-diphosphate farn... 532 e-163
Alignment gi|XP_856645.1| PREDICTED: similar to Farnesyl-diphosphate farn... 462 e-142
>ref|XP_534557.2| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 1 [Canis familiaris].
Length = 417
Score = 622 bits (1605), Expect(2) = 0.0
Identities = 302/346 (87%), Positives = 325/346 (93%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVI+ALDGEMRHAVCIFYLVLRALDTLEDDMTIS+EK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIEALDGEMRHAVCIFYLVLRALDTLEDDMTISVEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
K+PLLHNFH +LYE DWR+ ESKEKDRQVLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGF
Sbjct: 93 KVPLLHNFHSYLYEPDWRYMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGF 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFL+KHVTSE+EWDKYCHYVAGLVGIGLSRLFSASELEDPLVGED E ANSMGLFLQ
Sbjct: 153 GMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDIECANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQ+EGREFWPQEVWSKYVKKLGDFAKP+N+D AVQCLNEL+T+ LHHIP
Sbjct: 213 KTNIIRDYLEDQREGREFWPQEVWSKYVKKLGDFAKPQNIDSAVQCLNELITNALHHIPH 272
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
VITYLSRLRNQS+FNFCAIPQVM IATLAACYNNQQ F+G+ KI KG AVTLMMDAT+MP
Sbjct: 273 VITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGIVKIRKGQAVTLMMDATNMP 332
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIP SDP SG+TR+IISTIR NLPNCQLIS
Sbjct: 333 AVKAIIYQYMEEIYHRIPSSDPSSGKTRQIISTIRTQNLPNCQLIS 378
Score = 63.5 bits (153), Expect(2) = 0.0
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED V TGEH
Sbjct: 380 SHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
>ref|XP_856603.1| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 3 [Canis familiaris].
Length = 385
Score = 532 bits (1371), Expect(2) = e-163
Identities = 269/346 (77%), Positives = 290/346 (83%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVI+ALDGEMRHAVCIFYLVLRALDTLEDDMTIS+EK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIEALDGEMRHAVCIFYLVLRALDTLEDDMTISVEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
K+PLLHNFH +LYE DWR+ ESKEKDRQVLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGF
Sbjct: 93 KVPLLHNFHSYLYEPDWRYMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGF 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFL+KHVTSE+EWDKYCHYVAGLVGIGLSRLFSASELEDPLVGED E ANSMGLFLQ
Sbjct: 153 GMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDIECANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTN N+D AVQCLNEL+T+ LHHIP
Sbjct: 213 KTNY--------------------------------DGNIDSAVQCLNELITNALHHIPH 240
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
VITYLSRLRNQS+FNFCAIPQVM IATLAACYNNQQ F+G+ KI KG AVTLMMDAT+MP
Sbjct: 241 VITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGIVKIRKGQAVTLMMDATNMP 300
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIP SDP SG+TR+IISTIR NLPNCQLIS
Sbjct: 301 AVKAIIYQYMEEIYHRIPSSDPSSGKTRQIISTIRTQNLPNCQLIS 346
Score = 63.5 bits (153), Expect(2) = e-163
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED V TGEH
Sbjct: 348 SHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 385
>ref|XP_856645.1| PREDICTED: similar to Farnesyl-diphosphate farnesyltransferase
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) isoform 4 [Canis familiaris].
Length = 358
Score = 462 bits (1190), Expect(2) = e-142
Identities = 241/346 (69%), Positives = 263/346 (76%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVI+ALDGEMRHAVCIFYLVLRALDTLEDDMTIS+EK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIEALDGEMRHAVCIFYLVLRALDTLEDDMTISVEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
K+PLLHNFH +LYE DWR+ ESKEKDRQVLEDFPTI+LEFRNLAEKYQ VIVD+CRKMGF
Sbjct: 93 KVPLLHNFHSYLYEPDWRYMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGF 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFL+KHVTSE+EWDKYCHYVAGLVGIGLSRLFSASELEDPLVGED E ANSMGLFLQ
Sbjct: 153 GMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDIECANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQ+EGREFWPQEV +
Sbjct: 213 KTNIIRDYLEDQREGREFWPQEVMA----------------------------------- 237
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
+ T + NQ +F +G+ KI KG AVTLMMDAT+MP
Sbjct: 238 IATLAACYNNQQVF------------------------KGIVKIRKGQAVTLMMDATNMP 273
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIP SDP SG+TR+IISTIR NLPNCQLIS
Sbjct: 274 AVKAIIYQYMEEIYHRIPSSDPSSGKTRQIISTIRTQNLPNCQLIS 319
Score = 63.5 bits (153), Expect(2) = e-142
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED V TGEH
Sbjct: 321 SHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,376,057
Number of extensions: 2377099
Number of successful extensions: 11957
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11918
Number of HSP's successfully gapped: 8
Length of query: 553
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 445
Effective length of database: 15,274,216
Effective search space: 6797026120
Effective search space used: 6797026120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004453.3| squalene synthase [Homo sapiens]. 621 0.0
>ref|NP_004453.3| squalene synthase [Homo sapiens].
Length = 417
Score = 621 bits (1602), Expect(2) = 0.0
Identities = 302/346 (87%), Positives = 323/346 (93%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR+AVCIFYLVLRALDTLEDDMTIS+EK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
K+PLLHNFH LY+ DWRF ESKEKDRQVLEDFPTI+LEFRNLAEKYQ VI D+CR+MG
Sbjct: 93 KVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGI 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFL+KHVTSE+EWDKYCHYVAGLVGIGLSRLFSASE EDPLVGEDTERANSMGLFLQ
Sbjct: 153 GMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQQ GREFWPQEVWS+YVKKLGDFAKPEN+DLAVQCLNEL+T+ LHHIPD
Sbjct: 213 KTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPD 272
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
VITYLSRLRNQS+FNFCAIPQVM IATLAACYNNQQ F+G KI KG AVTLMMDAT+MP
Sbjct: 273 VITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDATNMP 332
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIPDSDP S +TR+IISTIR NLPNCQLIS
Sbjct: 333 AVKAIIYQYMEEIYHRIPDSDPSSSKTRQIISTIRTQNLPNCQLIS 378
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YL+TLSQ TED V TGEH
Sbjct: 380 SHYSPIYLSFVMLLAALSWQYLTTLSQVTEDYVQTGEH 417
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,733,155
Number of extensions: 2311904
Number of successful extensions: 10489
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10443
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 445
Effective length of database: 14,737,052
Effective search space: 6557988140
Effective search space used: 6557988140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034321.2| squalene synthase [Mus musculus]. 587 e-179
>ref|NP_034321.2| squalene synthase [Mus musculus].
Length = 416
Score = 587 bits (1513), Expect(2) = e-179
Identities = 282/346 (81%), Positives = 318/346 (91%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVIQALDG++RHA+C+FYLVLRALDT+EDDM+IS+EK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGDIRHAICVFYLVLRALDTVEDDMSISVEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
KIPLL NFH LY+ +WRFTESKEKDRQVLEDFPTI+LEFRNLAEKYQ VI D+C +MG
Sbjct: 93 KIPLLCNFHTFLYDPEWRFTESKEKDRQVLEDFPTISLEFRNLAEKYQTVIDDICHRMGC 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEF++K VTS+++WDKYCHYVAGLVGIGLSRLFSASE EDP+VGED E ANSMGLFLQ
Sbjct: 153 GMAEFVDKDVTSKQDWDKYCHYVAGLVGIGLSRLFSASEFEDPIVGEDIECANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQQEGR+FWPQEVW +Y+KKL DFAKPENVD+AVQCLNEL+T+TL HIPD
Sbjct: 213 KTNIIRDYLEDQQEGRKFWPQEVWGRYIKKLEDFAKPENVDVAVQCLNELITNTLQHIPD 272
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
V+TYLSRLRNQS+FNFCAIPQVM IATLAACYNNQQ F+GV KI KG AVTLMMDAT+MP
Sbjct: 273 VLTYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMP 332
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIP+SDP S +T+++IS IR NLPNCQLIS
Sbjct: 333 AVKAIIYQYIEEIYHRIPNSDPSSSKTKQVISKIRTQNLPNCQLIS 378
Score = 60.1 bits (144), Expect(2) = e-179
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTEDVHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED EH
Sbjct: 380 SHYSPIYLSFIMLLAALSWQYLSTLSQVTEDYVQREH 416
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,064,805
Number of extensions: 1909387
Number of successful extensions: 8650
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8604
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 447
Effective length of database: 12,433,743
Effective search space: 5557883121
Effective search space used: 5557883121
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161120.1| squalene synthase [Sus scrofa]. 660 0.0
>ref|NP_001161120.1| squalene synthase [Sus scrofa].
Length = 417
Score = 660 bits (1703), Expect(2) = 0.0
Identities = 327/346 (94%), Positives = 334/346 (96%)
Frame = +1
Query: 412 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 591
QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK
Sbjct: 33 QDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIEK 92
Query: 592 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 771
KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF
Sbjct: 93 KIPLLHNFHLHLYESDWRFTESKEKDRQVLEDFPTIALEFRNLAEKYQVVIVDVCRKMGF 152
Query: 772 GMAEFLNKHVTSEREWDKYCHYVAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 951
GMAEFLNKHVTSEREWDKYCHY AGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ
Sbjct: 153 GMAEFLNKHVTSEREWDKYCHYDAGLVGIGLSRLFSASELEDPLVGEDTERANSMGLFLQ 212
Query: 952 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 1131
KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD
Sbjct: 213 KTNIIRDYLEDQQEGREFWPQEVWSKYVKKLGDFAKPENVDLAVQCLNELVTSTLHHIPD 272
Query: 1132 VITYLSRLRNQSIFNFCAIPQVMGIATLAACYNNQQGFQGVGKIPKGPAVTLMMDATHMP 1311
VITYLSRLRNQSIFNFCAIPQVM IATLAACYNNQQ F+GV KI KG AVTLMMDAT+MP
Sbjct: 273 VITYLSRLRNQSIFNFCAIPQVMAIATLAACYNNQQVFKGVVKIRKGQAVTLMMDATNMP 332
Query: 1312 AVQTLIDPYLEEIYHRIPDSDPYSGQTREIISTIRAPNLPNCQLIS 1449
AV+ +I Y+EEIYHRIPDSDPYS +TR+IISTIR NLPNCQLIS
Sbjct: 333 AVKAIIHQYMEEIYHRIPDSDPYSAKTRQIISTIRTQNLPNCQLIS 378
Score = 63.5 bits (153), Expect(2) = 0.0
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 1454 NHYSPIYLSFLMLLAGLSWEYLSTLSQGTED-VHTGEH 1564
+HYSPIYLSF+MLLA LSW+YLSTLSQ TED V TGEH
Sbjct: 380 SHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYVQTGEH 417
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,631,984
Number of extensions: 1488630
Number of successful extensions: 6914
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6879
Number of HSP's successfully gapped: 2
Length of query: 553
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 449
Effective length of database: 8,754,644
Effective search space: 3930835156
Effective search space used: 3930835156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002180
(1660 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 971 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 971 bits (490), Expect = 0.0
Identities = 504/511 (98%)
Strand = Plus / Plus
Query: 2 ctggccctgggcgagtgggcggggcggcagacacccgctgggtgctcagcctcccagagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171694 ctggccctgggcgagtgggcggggcggcagacacccgctgggtgctcagcctcccagagc 16171753
Query: 62 ctcttgcggtgctgggagagcccgccccgcccctcggcgggtgcctctcctcttctcttg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171754 ctcttgcggtgctgggagagcccgccccgcccctcggcgggtgcctctcctcttctcttg 16171813
Query: 122 ggtctatggaggaaaaactctgcgcggaatacatggccgcagccgcctgcagtaccaagg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171814 ggtctatggaggaaaaactctgcgcggaatacatggccgcagccgcctgcagtaccaagg 16171873
Query: 182 ccatgtccctcttcaagcggaccttagtgctgagtcccggcgccgcgcccagaggtgcgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171874 ccatgtccctcttcaagcggaccttagtgctgagtcccggcgccgcgcccagaggtgcgg 16171933
Query: 242 gcannnnnnngcgcggctgttcctttaccccagccgcctggccctccaaggaccggccgc 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171934 gcacccccccgcgcggctgttcctttaccccagccgcctggccctccaaggaccggccgc 16171993
Query: 302 ggggagagggcgtctgctgcaggctgcggagtcccgtggcagccagccgcgcgccccagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16171994 ggggagagggcgtctgctgcaggctgcggagtcccgtggcagccagccgcgcgccccagt 16172053
Query: 362 cccactccagctcctctgcatctccgacagccgtgtgtgtcctctgcccgcaggactcgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16172054 cccactccagctcctctgcatctccgacagccgtgtgtgtcctctgcccgcaggactcgc 16172113
Query: 422 tcagcagcagtttgaaaacttgctacaagtatctgaatcagaccagtcgcagtttcgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16172114 tcagcagcagtttgaaaacttgctacaagtatctgaatcagaccagtcgcagtttcgcag 16172173
Query: 482 ccgttatccaggccctggatggggaaatgcg 512
|||||||||||||||||||||||||||||||
Sbjct: 16172174 ccgttatccaggccctggatggggaaatgcg 16172204
Score = 383 bits (193), Expect = e-103
Identities = 291/319 (91%), Gaps = 6/319 (1%)
Strand = Plus / Plus
Query: 1346 agatttatcacagaatccccgactcggacccttattccggccaaacaagggagattatct 1405
||||||||||||||||||||||||||||||||||||| | | |||||||| |||| ||||
Sbjct: 16198601 agatttatcacagaatccccgactcggacccttattcggccaaaacaaggcagatcatct 16198660
Query: 1406 ccaccatccgggcaccgaatcttcccaattgtcagctgatctcccccaaaccactactca 1465
|||||||| || ||| ||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 16198661 ccaccatcaggacacagaatcttcccaattgtcagctgatctcccg-aagccactactca 16198719
Query: 1466 cccatttacctgtcattcctcatgctgctggcgggcctgagctgggagtacctgagcacc 1525
|||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 16198720 cccatttacctgtcattcgtcatgctgctggcggccctgagctggcagtacctgagcacc 16198779
Query: 1526 ctgtcgcagggcacagagg---acgttcacactggggagcactgaccgggggctggggac 1582
|||||||||| |||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 16198780 ctgtcgcaggtcacagaggactacgttcagaccggggagcactgaccgggggctggggac 16198839
Query: 1583 tgagggcgcccagga-cacccacctcttccgggatggatgtgggggtccaccctcctccc 1641
|||||||| |||||| |||| |||||||| |||||||||||||| ||||||||||||| |
Sbjct: 16198840 tgagggcg-ccaggaccaccgacctcttcagggatggatgtgggcgtccaccctcctcac 16198898
Query: 1642 tcctggaaaaactcatggg 1660
||||| || ||||||||||
Sbjct: 16198899 tcctgcaacaactcatggg 16198917
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Plus
Query: 824 agtactgtcactacgttgctgggctggtgggaattggcctttcccgtctattctcggcct 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181301 agtactgtcactacgttgctgggctggtgggaattggcctttcccgtctattctcggcct 16181360
Query: 884 cagagttagaagatcccttggtgggtgaagacacagagcgtgccaactccatgggcctgt 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181361 cagagttagaagatcccttggtgggtgaagacacagagcgtgccaactccatgggcctgt 16181420
Query: 944 tcctgcagaaaacaaacatcatccgtgattatctggaagaccagcaagaaggaagagagt 1003
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 16181421 tcctgcagaaaacaaacatcatccgtgattatctggaagatcagcaagaaggaagagagt 16181480
Query: 1004 tttggcctcaagaggt 1019
||||||||||||||||
Sbjct: 16181481 tttggcctcaagaggt 16181496
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 512 gccatgcagtgtgcatattttatctggttctccgagctctggacactctggaagatgaca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173205 gccatgcagtgtgcatattttatctggttctccgagctctggacactctggaagatgaca 16173264
Query: 572 tgaccatcagtatagagaagaagatccccctgttacacaacttccacttgcacctttatg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173265 tgaccatcagtatagagaagaagatccccctgttacacaacttccacttgcacctttatg 16173324
Query: 632 agtctgactggcggttcactgagagcaaagagaaggaccgacaagtcctggaggactttc 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16173325 agtctgactggcggttcactgagagcaaagagaaggaccgacaagtcctggaggactttc 16173384
Query: 692 caacg 696
|||||
Sbjct: 16173385 caacg 16173389
Score = 351 bits (177), Expect = 8e-94
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 1016 aggtttggagcaagtatgttaagaagttgggtgactttgcaaagccagagaacgtggact 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187381 aggtttggagcaagtatgttaagaagttgggtgactttgcaaagccagagaacgtggact 16187440
Query: 1076 tggccgtgcagtgcctgaacgagctagtcaccagtacactgcaccacatccccgacgtca 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16187441 tggccgtgcagtgcctgaacgagctagtcaccagtacactgcaccacatccccgacgtca 16187500
Query: 1136 tcacgtacctttcacgacttagaaaccagagcatatttaacttctgtgctatcccccagg 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 16187501 tcacgtacctttcacgacttagaaaccagagcatatttaacttctgtgctatcccacagg 16187560
Query: 1196 t 1196
|
Sbjct: 16187561 t 16187561
Score = 258 bits (130), Expect = 9e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 696 gattgccctcgagtttagaaatctggctgagaaatatcaagtggtgatagttgacgtttg 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16177974 gattgccctcgagtttagaaatctggctgagaaatatcaagtggtgatagttgacgtttg 16178033
Query: 756 ccggaagatgggattcgggatggcagagtttttgaataagcacgtgacatcagaacggga 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16178034 ccggaagatgggattcgggatggcagagtttttgaataagcacgtgacatcagaacggga 16178093
Query: 816 gtgggacaag 825
||||||||||
Sbjct: 16178094 gtgggacaag 16178103
Score = 196 bits (99), Expect = 3e-47
Identities = 141/155 (90%)
Strand = Plus / Plus
Query: 1193 aggtcatgggcattgctactttggctgcctgttataataatcagcaagggttccaagggg 1252
||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct: 16190378 aggtcatggccattgctactttggctgcctgttataataatcagcaggtgttcaaagggg 16190437
Query: 1253 tggggaagattccaaaagggccagcagtcaccctgatgatggatgccacccacatgccag 1312
||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 16190438 tggtgaagattcgaaaagggcaagcagtcaccctgatgatggatgccaccaacatgccag 16190497
Query: 1313 ctgtccaaaccctaatagacccgtacctggaagag 1347
||||| || || ||||| ||| |||| ||||||||
Sbjct: 16190498 ctgtcaaagccataatacaccagtacatggaagag 16190532
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,578,852
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 7
Length of query: 1660
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1638
Effective length of database: 2,808,408,574
Effective search space: 4600173244212
Effective search space used: 4600173244212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)