Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015515.1| chitinase domain-containing protein 1 precur... 643 0.0
>ref|NP_001015515.1| chitinase domain-containing protein 1 precursor [Bos taurus].
Length = 393
Score = 643 bits (1659), Expect = 0.0
Identities = 312/368 (84%), Positives = 331/368 (89%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EKTQV+G P QERGLVVTDLRAEDVVLEHRSYCSAKA RKHF
Sbjct: 18 HATLSKSDAKKAASKTLQEKTQVSGKPAQERGLVVTDLRAEDVVLEHRSYCSAKAHRKHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGY+TPWN HGYD+AKIF GKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGW+RAV
Sbjct: 78 AGDVLGYITPWNRHGYDVAKIFGGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWLRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RKQ KGLRIVPRLRFEDWTYEDF +VLD+EDEIEELSRTVVQVAKSQ FDG VVEVWNQL
Sbjct: 138 RKQAKGLRIVPRLRFEDWTYEDFDSVLDNEDEIEELSRTVVQVAKSQHFDGLVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L+QKH GLIH+LTH+ EALHQARLL LVIPPAVAPGTNKLG+FT+ EFEQLAP+LDGFS
Sbjct: 198 LVQKHAGLIHLLTHMAEALHQARLLVFLVIPPAVAPGTNKLGMFTNTEFEQLAPVLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTAQ GPNAPL WVRACVQVLDPKS+WRSKILLGLNFYGMDY+ASKDAREPII
Sbjct: 258 LMTYDYSTAQPAGPNAPLPWVRACVQVLDPKSKWRSKILLGLNFYGMDYSASKDAREPII 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRP++ WDSQAAEH FEYKK+RGGRH+VFYPTLKSLQ RLELA+ELGVGL
Sbjct: 318 GARYIQTLKDHRPQVVWDSQAAEHFFEYKKSRGGRHVVFYPTLKSLQERLELAQELGVGL 377
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 378 SIWELGQG 385
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,398,882
Number of extensions: 1959416
Number of successful extensions: 12080
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11961
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,174,046
Effective search space: 4904219916
Effective search space used: 4904219916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850850.1| PREDICTED: similar to CG8460-PA isoform 1 [Cani... 627 e-179
Alignment gi|XP_862465.1| PREDICTED: similar to CG8460-PA isoform 3 [Cani... 617 e-176
Alignment gi|XP_862439.1| PREDICTED: similar to CG8460-PA isoform 2 [Cani... 555 e-158
>ref|XP_850850.1| PREDICTED: similar to CG8460-PA isoform 1 [Canis familiaris].
Length = 393
Score = 627 bits (1616), Expect = e-179
Identities = 304/368 (82%), Positives = 329/368 (89%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EKTQ + PVQ+RGLVVT+LRAEDVVLEHRSYCS KA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKTQFSEKPVQDRGLVVTELRAEDVVLEHRSYCSPKARERHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+AK+F GKFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVAKVFGGKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RKQ KGLRIVPRL FEDWT+EDFRNVLDSEDEIEEL +T+VQVAKSQ FDGFVVEVW+QL
Sbjct: 138 RKQAKGLRIVPRLLFEDWTHEDFRNVLDSEDEIEELGKTMVQVAKSQHFDGFVVEVWSQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QKHVGLIHMLTH+ EALHQARLLAILVIPPAV PGT++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKHVGLIHMLTHLAEALHQARLLAILVIPPAVTPGTDQLGMFTHKEFEQLAPVLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDY TAQQPGPNAPLSWVRACVQVLDPKS+WRSKILLGLN YGMDYAAS+DAREP+I
Sbjct: 258 LMTYDYPTAQQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNLYGMDYAASRDAREPVI 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQ LKDHRPRI WDSQAAEH FEYKK+RGGRHIVFYPTLKS+QVRLELARELGVG+
Sbjct: 318 GARYIQMLKDHRPRIIWDSQAAEHFFEYKKSRGGRHIVFYPTLKSVQVRLELARELGVGV 377
Query: 1252 SILGAGPG 1275
S+ G G
Sbjct: 378 SMWELGQG 385
>ref|XP_862465.1| PREDICTED: similar to CG8460-PA isoform 3 [Canis familiaris].
Length = 412
Score = 617 bits (1590), Expect = e-176
Identities = 295/342 (86%), Positives = 319/342 (93%)
Frame = +1
Query: 250 PVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHFAGDVLGYVTPWNSHGYDIAKIFAGKF 429
PVQ+RGLVVT+LRAEDVVLEHRSYCS KA +HFAGDVLGYVTPWNSHGYD+AK+F GKF
Sbjct: 63 PVQDRGLVVTELRAEDVVLEHRSYCSPKARERHFAGDVLGYVTPWNSHGYDVAKVFGGKF 122
Query: 430 THVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAVRKQTKGLRIVPRLRFEDWTYEDFRNV 609
T ++PVWLQL+R GREMFEVTGL DVDQGWMRAVRKQ KGLRIVPRL FEDWT+EDFRNV
Sbjct: 123 TQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKQAKGLRIVPRLLFEDWTHEDFRNV 182
Query: 610 LDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQLLIQKHVGLIHMLTHVVEALHQARLLA 789
LDSEDEIEEL +T+VQVAKSQ FDGFVVEVW+QLL QKHVGLIHMLTH+ EALHQARLLA
Sbjct: 183 LDSEDEIEELGKTMVQVAKSQHFDGFVVEVWSQLLSQKHVGLIHMLTHLAEALHQARLLA 242
Query: 790 ILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFSLMTYDYSTAQQPGPNAPLSWVRACVQ 969
ILVIPPAV PGT++LG+FTHKEFEQLAP+LDGFSLMTYDY TAQQPGPNAPLSWVRACVQ
Sbjct: 243 ILVIPPAVTPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYPTAQQPGPNAPLSWVRACVQ 302
Query: 970 VLDPKSRWRSKILLGLNFYGMDYAASKDAREPIIGARYIQTLKDHRPRITWDSQAAEHVF 1149
VLDPKS+WRSKILLGLN YGMDYAAS+DAREP+IGARYIQ LKDHRPRI WDSQAAEH F
Sbjct: 303 VLDPKSKWRSKILLGLNLYGMDYAASRDAREPVIGARYIQMLKDHRPRIIWDSQAAEHFF 362
Query: 1150 EYKKNRGGRHIVFYPTLKSLQVRLELARELGVGLSILGAGPG 1275
EYKK+RGGRHIVFYPTLKS+QVRLELARELGVG+S+ G G
Sbjct: 363 EYKKSRGGRHIVFYPTLKSVQVRLELARELGVGVSMWELGQG 404
>ref|XP_862439.1| PREDICTED: similar to CG8460-PA isoform 2 [Canis familiaris].
Length = 362
Score = 555 bits (1431), Expect = e-158
Identities = 276/368 (75%), Positives = 300/368 (81%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EKTQ + PVQ+RGLVVT+LRAEDVVLEHRSYCS KA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKTQFSEKPVQDRGLVVTELRAEDVVLEHRSYCSPKARERHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+AK+F GKFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVAKVFGGKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RKQ KGLRIVPRL FEDWT+EDFRNVLDSEDEIEEL +T+VQVAKSQ FDGFVVEVW+QL
Sbjct: 138 RKQAKGLRIVPRLLFEDWTHEDFRNVLDSEDEIEELGKTMVQVAKSQHFDGFVVEVWSQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QKHV T++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKHV-------------------------------TDQLGMFTHKEFEQLAPVLDGFS 226
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDY TAQQPGPNAPLSWVRACVQVLDPKS+WRSKILLGLN YGMDYAAS+DAREP+I
Sbjct: 227 LMTYDYPTAQQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNLYGMDYAASRDAREPVI 286
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQ LKDHRPRI WDSQAAEH FEYKK+RGGRHIVFYPTLKS+QVRLELARELGVG+
Sbjct: 287 GARYIQMLKDHRPRIIWDSQAAEHFFEYKKSRGGRHIVFYPTLKSVQVRLELARELGVGV 346
Query: 1252 SILGAGPG 1275
S+ G G
Sbjct: 347 SMWELGQG 354
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,840,568
Number of extensions: 2014672
Number of successful extensions: 12589
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12316
Number of HSP's successfully gapped: 4
Length of query: 452
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 346
Effective length of database: 15,340,888
Effective search space: 5307947248
Effective search space used: 5307947248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136147.1| chitinase domain-containing protein 1 isofor... 619 e-177
Alignment gi|NP_001136146.1| chitinase domain-containing protein 1 isofor... 619 e-177
Alignment gi|NP_076436.3| chitinase domain-containing protein 1 isoform a... 619 e-177
Alignment gi|NP_001136148.1| chitinase domain-containing protein 1 isofor... 612 e-175
Alignment gi|NP_001136149.1| chitinase domain-containing protein 1 isofor... 548 e-156
>ref|NP_001136147.1| chitinase domain-containing protein 1 isoform a [Homo sapiens].
Length = 393
Score = 619 bits (1595), Expect = e-177
Identities = 297/368 (80%), Positives = 325/368 (88%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EK+Q + PVQ+RGLVVTDL+AE VVLEHRSYCSAKA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+ K+F KFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RK KGL IVPRL FEDWTY+DFRNVLDSEDEIEELS+TVVQVAK+Q FDGFVVEVWNQL
Sbjct: 138 RKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QK VGLIHMLTH+ EALHQARLLA+LVIPPA+ PGT++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTA QPGPNAPLSWVRACVQVLDPKS+WRSKILLGLNFYGMDYA SKDAREP++
Sbjct: 258 LMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVV 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRPR+ WDSQA+EH FEYKK+R GRH+VFYPTLKSLQVRLELARELGVG+
Sbjct: 318 GARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGV 377
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 378 SIWELGQG 385
>ref|NP_001136146.1| chitinase domain-containing protein 1 isoform a [Homo sapiens].
Length = 393
Score = 619 bits (1595), Expect = e-177
Identities = 297/368 (80%), Positives = 325/368 (88%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EK+Q + PVQ+RGLVVTDL+AE VVLEHRSYCSAKA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+ K+F KFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RK KGL IVPRL FEDWTY+DFRNVLDSEDEIEELS+TVVQVAK+Q FDGFVVEVWNQL
Sbjct: 138 RKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QK VGLIHMLTH+ EALHQARLLA+LVIPPA+ PGT++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTA QPGPNAPLSWVRACVQVLDPKS+WRSKILLGLNFYGMDYA SKDAREP++
Sbjct: 258 LMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVV 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRPR+ WDSQA+EH FEYKK+R GRH+VFYPTLKSLQVRLELARELGVG+
Sbjct: 318 GARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGV 377
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 378 SIWELGQG 385
>ref|NP_076436.3| chitinase domain-containing protein 1 isoform a [Homo sapiens].
Length = 393
Score = 619 bits (1595), Expect = e-177
Identities = 297/368 (80%), Positives = 325/368 (88%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EK+Q + PVQ+RGLVVTDL+AE VVLEHRSYCSAKA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+ K+F KFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RK KGL IVPRL FEDWTY+DFRNVLDSEDEIEELS+TVVQVAK+Q FDGFVVEVWNQL
Sbjct: 138 RKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QK VGLIHMLTH+ EALHQARLLA+LVIPPA+ PGT++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTA QPGPNAPLSWVRACVQVLDPKS+WRSKILLGLNFYGMDYA SKDAREP++
Sbjct: 258 LMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVV 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRPR+ WDSQA+EH FEYKK+R GRH+VFYPTLKSLQVRLELARELGVG+
Sbjct: 318 GARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGV 377
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 378 SIWELGQG 385
>ref|NP_001136148.1| chitinase domain-containing protein 1 isoform b [Homo sapiens].
Length = 418
Score = 612 bits (1577), Expect = e-175
Identities = 291/353 (82%), Positives = 320/353 (90%)
Frame = +1
Query: 217 TLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHFAGDVLGYVTPWNSHG 396
T ++Q + PVQ+RGLVVTDL+AE VVLEHRSYCSAKA +HFAGDVLGYVTPWNSHG
Sbjct: 58 TSATQSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHG 117
Query: 397 YDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAVRKQTKGLRIVPRLRF 576
YD+ K+F KFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAVRK KGL IVPRL F
Sbjct: 118 YDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLF 177
Query: 577 EDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQLLIQKHVGLIHMLTHV 756
EDWTY+DFRNVLDSEDEIEELS+TVVQVAK+Q FDGFVVEVWNQLL QK VGLIHMLTH+
Sbjct: 178 EDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHL 237
Query: 757 VEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFSLMTYDYSTAQQPGPN 936
EALHQARLLA+LVIPPA+ PGT++LG+FTHKEFEQLAP+LDGFSLMTYDYSTA QPGPN
Sbjct: 238 AEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPN 297
Query: 937 APLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPIIGARYIQTLKDHRPRI 1116
APLSWVRACVQVLDPKS+WRSKILLGLNFYGMDYA SKDAREP++GARYIQTLKDHRPR+
Sbjct: 298 APLSWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPRM 357
Query: 1117 TWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGLSILGAGPG 1275
WDSQA+EH FEYKK+R GRH+VFYPTLKSLQVRLELARELGVG+SI G G
Sbjct: 358 VWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQG 410
>ref|NP_001136149.1| chitinase domain-containing protein 1 isoform c [Homo sapiens].
Length = 362
Score = 548 bits (1413), Expect = e-156
Identities = 271/368 (73%), Positives = 296/368 (80%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL TL EK+Q + PVQ+RGLVVTDL+AE VVLEHRSYCSAKA +HF
Sbjct: 18 HTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYD+ K+F KFT ++PVWLQL+R GREMFEVTGL DVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RK KGL IVPRL FEDWTY+DFRNVLDSEDEIEELS+TVVQVAK+Q FDGFVVEVWNQL
Sbjct: 138 RKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QK V T++LG+FTHKEFEQLAP+LDGFS
Sbjct: 198 LSQKRV-------------------------------TDQLGMFTHKEFEQLAPVLDGFS 226
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTA QPGPNAPLSWVRACVQVLDPKS+WRSKILLGLNFYGMDYA SKDAREP++
Sbjct: 227 LMTYDYSTAHQPGPNAPLSWVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVV 286
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRPR+ WDSQA+EH FEYKK+R GRH+VFYPTLKSLQVRLELARELGVG+
Sbjct: 287 GARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGV 346
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 347 SIWELGQG 354
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,403,410
Number of extensions: 1949070
Number of successful extensions: 11609
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 11430
Number of HSP's successfully gapped: 6
Length of query: 452
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,802,980
Effective search space: 5121831080
Effective search space used: 5121831080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136153.1| chitinase domain-containing protein 1 isofor... 622 e-178
Alignment gi|NP_080798.2| chitinase domain-containing protein 1 isoform 2... 340 2e-93
>ref|NP_001136153.1| chitinase domain-containing protein 1 isoform 1 [Mus musculus].
Length = 396
Score = 622 bits (1603), Expect = e-178
Identities = 295/368 (80%), Positives = 329/368 (89%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL L EKTQ + PVQ+RGLVVTD++AEDVVLEHRSYCS++A ++F
Sbjct: 21 HTTLSKSDAKKAASKMLLEKTQFSDKPVQDRGLVVTDIKAEDVVLEHRSYCSSRARERNF 80
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AG+VLGYVTPWNSHGYD+AK+F KFT ++PVWLQL+R GREMFE+TGL DVDQGWMRAV
Sbjct: 81 AGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAV 140
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
+K KG+RIVPRL FEDWTY+DFRNVLDSEDEIEELS+TV QVAK+Q FDGFVVEVW+QL
Sbjct: 141 KKHAKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQL 200
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
L QKHVGLIHMLTH+ EALHQARLL ILVIPPAV PGT++LG+FTHKEFEQLAP+LDGFS
Sbjct: 201 LSQKHVGLIHMLTHLAEALHQARLLVILVIPPAVTPGTDQLGMFTHKEFEQLAPILDGFS 260
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYST+QQPGPNAPLSW+RACVQVLDPKS+WRSKILLGLNFYGMDYAASKDAREP+I
Sbjct: 261 LMTYDYSTSQQPGPNAPLSWIRACVQVLDPKSQWRSKILLGLNFYGMDYAASKDAREPVI 320
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARY+QTLKDHRPR+ WDSQAAEH FEYKKNRGGRH+VFYPTLKSLQVRLELARELGVG+
Sbjct: 321 GARYVQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVFYPTLKSLQVRLELARELGVGV 380
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 381 SIWELGQG 388
>ref|NP_080798.2| chitinase domain-containing protein 1 isoform 2 [Mus musculus].
Length = 310
Score = 340 bits (872), Expect = 2e-93
Identities = 162/217 (74%), Positives = 184/217 (84%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
H TL L EKTQ + PVQ+RGLVVTD++AEDVVLEHRSYCS++A ++F
Sbjct: 21 HTTLSKSDAKKAASKMLLEKTQFSDKPVQDRGLVVTDIKAEDVVLEHRSYCSSRARERNF 80
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AG+VLGYVTPWNSHGYD+AK+F KFT ++PVWLQL+R GREMFE+TGL DVDQGWMRAV
Sbjct: 81 AGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAV 140
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
+K KG+RIVPRL FEDWTY+DFRNVLDSEDEIEELS+TV QVAK+Q FDGFVVEVW+QL
Sbjct: 141 KKHAKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQL 200
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPG 822
L QKHVGLIHMLTH+ EALHQARLL ILVIPPAV PG
Sbjct: 201 LSQKHVGLIHMLTHLAEALHQARLLVILVIPPAVTPG 237
Score = 120 bits (302), Expect = 2e-27
Identities = 56/71 (78%), Positives = 61/71 (85%)
Frame = +1
Query: 1063 PIIGARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELG 1242
P + Y+QTLKDHRPR+ WDSQAAEH FEYKKNRGGRH+VFYPTLKSLQVRLELARELG
Sbjct: 232 PAVTPGYVQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVFYPTLKSLQVRLELARELG 291
Query: 1243 VGLSILGAGPG 1275
VG+SI G G
Sbjct: 292 VGVSIWELGQG 302
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,769,128
Number of extensions: 1591856
Number of successful extensions: 8842
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8746
Number of HSP's successfully gapped: 3
Length of query: 452
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 347
Effective length of database: 12,463,779
Effective search space: 4324931313
Effective search space used: 4324931313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230739.1| chitinase domain containing 1 [Sus scrofa]. 711 0.0
>ref|NP_001230739.1| chitinase domain containing 1 [Sus scrofa].
Length = 393
Score = 711 bits (1836), Expect = 0.0
Identities = 353/368 (95%), Positives = 353/368 (95%)
Frame = +1
Query: 172 HGTLXXXXXXXXXXXTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 351
HGTL TLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF
Sbjct: 18 HGTLSKSDAKKAASKTLPEKTQVAGVPVQERGLVVTDLRAEDVVLEHRSYCSAKALRKHF 77
Query: 352 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 531
AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV
Sbjct: 78 AGDVLGYVTPWNSHGYDIAKIFAGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWMRAV 137
Query: 532 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 711
RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL
Sbjct: 138 RKQTKGLRIVPRLRFEDWTYEDFRNVLDSEDEIEELSRTVVQVAKSQRFDGFVVEVWNQL 197
Query: 712 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 891
LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS
Sbjct: 198 LIQKHVGLIHMLTHVVEALHQARLLAILVIPPAVAPGTNKLGVFTHKEFEQLAPLLDGFS 257
Query: 892 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 1071
LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII
Sbjct: 258 LMTYDYSTAQQPGPNAPLSWVRACVQVLDPKSRWRSKILLGLNFYGMDYAASKDAREPII 317
Query: 1072 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 1251
GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL
Sbjct: 318 GARYIQTLKDHRPRITWDSQAAEHVFEYKKNRGGRHIVFYPTLKSLQVRLELARELGVGL 377
Query: 1252 SILGAGPG 1275
SI G G
Sbjct: 378 SIWELGQG 385
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,817,541
Number of extensions: 1270514
Number of successful extensions: 7898
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7820
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 350
Effective length of database: 8,804,438
Effective search space: 3081553300
Effective search space used: 3081553300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002188
(1356 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 313 1e-82
Sscrofa_Chr01 64 2e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 74 agccccccggaccccgagcttggaccctgccgtgacaggcccgcaccatgcgaagcctcc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105700 agccccccggaccccgagcttggaccctgccgtgacaggcccgcaccatgcgaagcctcc 105759
Query: 134 tcggcgcgctctggctcgctctggcttgcggctctgctcacggcaccctgtcgaagtccg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105760 tcggcgcgctctggctcgctctggcttgcggctctgctcacggcaccctgtcgaagtccg 105819
Query: 194 atgccaaaaaggctgcctccaagacactgccggagaag 231
||||||||||||||||||||||||||||||||||||||
Sbjct: 105820 atgccaaaaaggctgcctccaagacactgccggagaag 105857
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 924 gcctggccccaacgcaccgctgtcctgggtgcgggcctgtgtccaggtcctggaccccaa 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114789 gcctggccccaacgcaccgctgtcctgggtgcgggcctgtgtccaggtcctggaccccaa 114848
Query: 984 gtcccggtggcggagcaagatcctgctggggctcaacttctacggcatggactacgcagc 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114849 gtcccggtggcggagcaagatcctgctggggctcaacttctacggcatggactacgcagc 114908
Query: 1044 ctccaaggatgcccgcgagcccatcattggggccaggt 1081
||||||||||||||||||||||||||||||||||||||
Sbjct: 114909 ctccaaggatgcccgcgagcccatcattggggccaggt 114946
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 230 agactcaggttgcgggcgtgcccgtccaggagcggggtctggtggtgacagacctcagag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106414 agactcaggttgcgggcgtgcccgtccaggagcggggtctggtggtgacagacctcagag 106473
Query: 290 ccgaggacgtggttcttgagcatcgcagctactgctccgcgaaggccctcaggaaacact 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106474 ccgaggacgtggttcttgagcatcgcagctactgctccgcgaaggccctcaggaaacact 106533
Query: 350 ttgccggggacgtcctgggctacgtcactcca 381
||||||||||||||||||||||||||||||||
Sbjct: 106534 ttgccggggacgtcctgggctacgtcactcca 106565
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 382 tggaacagccacggctacgacatcgccaagatctttgcgggcaagttcacccacgtggcg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106679 tggaacagccacggctacgacatcgccaagatctttgcgggcaagttcacccacgtggcg 106738
Query: 442 cccgtgtggctgcagctgaggcggcatggccgcgagatgttcgaggtcacaggcctcgac 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106739 cccgtgtggctgcagctgaggcggcatggccgcgagatgttcgaggtcacaggcctcgac 106798
Query: 502 gacgtggaccaagg 515
||||||||||||||
Sbjct: 106799 gacgtggaccaagg 106812
Score = 220 bits (111), Expect = 2e-54
Identities = 132/135 (97%), Gaps = 3/135 (2%)
Strand = Plus / Plus
Query: 1202 agtccttgcaggtgcggcttgagctggccagggagttgggcgtcgggctgtccatcttgg 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121862 agtccttgcaggtgcggcttgagctggccagggagttgggcgtcgggctgtccatc-tgg 121920
Query: 1262 gagctgggccagggcctggactaacttctacgaccctgctgtaggctgggcctggactgg 1321
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 121921 gagctgggccagggcctggact-acttctacga-cctgctgtaggctgggcctggactgg 121978
Query: 1322 cctgcacaataaaga 1336
|||||||||||||||
Sbjct: 121979 cctgcacaataaaga 121993
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 558 agtgccccggctccggtttgaggactggacgtacgaggacttccggaacgtcctggacag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107868 agtgccccggctccggtttgaggactggacgtacgaggacttccggaacgtcctggacag 107927
Query: 618 tgaggacgagatagaggagctgagcaggactgtggtccaggtggccaag 666
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107928 tgaggacgagatagaggagctgagcaggactgtggtccaggtggccaag 107976
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 821 ggaccaacaagctgggcgtgttcacgcacaaggagtttgagcagctggcgcccctgctgg 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114186 ggaccaacaagctgggcgtgttcacgcacaaggagtttgagcagctggcgcccctgctgg 114245
Query: 881 acggcttcagcctcatgacctacgactactccacggcgcagcag 924
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114246 acggcttcagcctcatgacctacgactactccacggcgcagcag 114289
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1076 ccaggtacatccagacgctgaaggaccacaggccccggatcacgtgggacagccaagccg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121388 ccaggtacatccagacgctgaaggaccacaggccccggatcacgtgggacagccaagccg 121447
Query: 1136 cagagcacgtcttcgagtacaagaag 1161
||||||||||||||||||||||||||
Sbjct: 121448 cagagcacgtcttcgagtacaagaag 121473
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 2 ggacttccggtggcggccgtgagcgtcttccggccacgcgcgagtttgttccggtcggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103473 ggacttccggtggcggccgtgagcgtcttccggccacgcgcgagtttgttccggtcggcc 103532
Query: 62 tccgggacatgaag 75
||||||||||||||
Sbjct: 103533 tccgggacatgaag 103546
Score = 145 bits (73), Expect = 7e-32
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 729 gggcctcattcacatgctcacccacgtggtcgaggcgctgcaccaggcccggctgctggc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111046 gggcctcattcacatgctcacccacgtggtcgaggcgctgcaccaggcccggctgctggc 111105
Query: 789 catcctggtcatnnnnnnngccgtcgcccccggg 822
|||||||||||| |||||||||||||||
Sbjct: 111106 catcctggtcatcccccccgccgtcgcccccggg 111139
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 665 agagccagcgcttcgacggcttcgtggtggaggtctggaaccagctgctgatccagaagc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108257 agagccagcgcttcgacggcttcgtggtggaggtctggaaccagctgctgatccagaagc 108316
Query: 725 acgtg 729
|||||
Sbjct: 108317 acgtg 108321
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 513 agggtggatgcgagcagtcaggaagcagaccaagggcctccgcatag 559
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107248 agggtggatgcgagcagtcaggaagcagaccaagggcctccgcatag 107294
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1161 gaaccgcggtgggaggcacatcgtcttctacccgacgctgaag 1203
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121672 gaaccgcggtgggaggcacatcgtcttctacccgacgctgaag 121714
>Sscrofa_Chr01
|| Length = 315321322
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 1173 gaggcacatcgtcttctacccgacgctgaagtccttgcaggtgcggcttgagctggccag 1232
|||||||||| ||||||||| ||| ||||||| | ||| |||| |||| |||||||||||
Sbjct: 58729518 gaggcacatcatcttctaccagactctgaagttcctgctggtgtggctagagctggccag 58729459
Query: 1233 ggag 1236
||||
Sbjct: 58729458 ggag 58729455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,338,474
Number of extensions: 148
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 14
Length of query: 1356
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1335
Effective length of database: 2,808,413,156
Effective search space: 3749231563260
Effective search space used: 3749231563260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)