Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus]. 432 e-121
Alignment gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus]. 384 e-107
Alignment gi|NP_777125.1| endoplasmin precursor [Bos taurus]. 189 7e-48
Alignment gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre... 57 3e-08
>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
Length = 733
Score = 432 bits (1111), Expect = e-121
Identities = 221/237 (93%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 497 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 556
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 557 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 616
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 617 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 676
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD
Sbjct: 677 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 733
>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
Length = 724
Score = 384 bits (987), Expect = e-107
Identities = 189/237 (79%), Positives = 211/237 (89%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GE+ +QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 488 GESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDE 547
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMK
Sbjct: 548 EEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMK 607
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSG
Sbjct: 608 AQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSG 667
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTH+NRIYRMIKLGLGIDED+ TA++ SAAV +E+PPLEGD+D SRMEEVD
Sbjct: 668 FSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLEGDEDASRMEEVD 724
>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
Length = 804
Score = 189 bits (479), Expect = 7e-48
Identities = 103/241 (42%), Positives = 140/241 (58%), Gaps = 4/241 (1%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G + + +S FVERL K G EVIY+ EP+DEYC+Q L EF+GK +V KEG++
Sbjct: 543 GASRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESE 602
Query: 181 XXXXXXXXXXXXFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 357
FE L MKD L+ K+EK VVS RL SPC +V S YGW+ NMERIM
Sbjct: 603 KSKESREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIM 662
Query: 358 KAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETAL 528
KAQA +D ST Y + KK EINP H +I + ++ + D++DK+V DL ++L+ETA
Sbjct: 663 KAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRVKEDEDDKTVSDLAVVLFETAT 722
Query: 529 LSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEV 708
L SG+ L D + + +RI RM++L L ID D ++ E D + EE+
Sbjct: 723 LRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKVEEEPEEEPEETTEDTAEDTEQDEEEEM 782
Query: 709 D 711
D
Sbjct: 783 D 783
>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
Length = 703
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Frame = +1
Query: 25 NSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGL-----ELPXXXXXX 189
+S + E +++ EV++ E DE + L+EF+ K L+SV + + E
Sbjct: 509 HSPYYEAMKRKNTEVLFCYEQFDELTLLHLREFDKKKLISVETDIVVDHYKEEKFEDGAP 568
Query: 190 XXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQA 369
E+L M++ L ++ V V+ RL T P I G + R+ +
Sbjct: 569 AGDCLSEKETEDLMAWMRNALGSRITDVKVTLRLDTHPAMITVLEMGAARHFLRMRQLAK 628
Query: 370 LRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSL 549
++ + LEINP H +I+ L Q +++ + + LV +YE A++++G +
Sbjct: 629 TQEERAQ---LLQPTLEINPRHVLIKKLSQLRDSEPDLAQL--LVDQIYENAMITAGL-I 682
Query: 550 EDPQTHANRIYRMI 591
+DP+ R+ +++
Sbjct: 683 DDPRPMVGRLNQLL 696
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,976,950
Number of extensions: 1147299
Number of successful extensions: 3475
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3463
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90... 431 e-120
Alignment gi|XP_537557.2| PREDICTED: similar to heat shock protein 1, alp... 431 e-120
Alignment gi|XP_868588.1| PREDICTED: similar to heat shock protein 1, alp... 406 e-113
Alignment gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90... 402 e-112
Alignment gi|XP_857093.1| PREDICTED: similar to Heat shock protein HSP 90... 402 e-112
Alignment gi|XP_866014.1| PREDICTED: similar to heat shock protein HSP 90... 362 e-100
Alignment gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet... 323 3e-88
Alignment gi|XP_850113.1| PREDICTED: similar to heat shock protein 1, bet... 306 4e-85
Alignment gi|XP_854919.1| PREDICTED: similar to Heat shock protein HSP 90... 299 4e-81
Alignment gi|XP_866031.1| PREDICTED: similar to heat shock protein 1, bet... 293 3e-79
>ref|XP_868585.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 2 [Canis familiaris].
Length = 469
Score = 431 bits (1107), Expect = e-120
Identities = 220/237 (92%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 233 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 292
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 293 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 352
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 353 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 412
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAV+EEMPPLEGDDDTSRMEEVD
Sbjct: 413 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVSEEMPPLEGDDDTSRMEEVD 469
>ref|XP_537557.2| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 615
Score = 431 bits (1107), Expect = e-120
Identities = 220/237 (92%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 379 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 438
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 439 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 498
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 499 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 558
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAV+EEMPPLEGDDDTSRMEEVD
Sbjct: 559 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVSEEMPPLEGDDDTSRMEEVD 615
>ref|XP_868588.1| PREDICTED: similar to heat shock protein 1, alpha isoform 3 [Canis
familiaris].
Length = 607
Score = 406 bits (1043), Expect = e-113
Identities = 212/237 (89%), Positives = 213/237 (89%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 379 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 438
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 439 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 498
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 499 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 558
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGL ADDSSAAV+EEMPPLEGDDDTSRMEEVD
Sbjct: 559 FSLEDPQTHANRIYRMIKLGL--------ADDSSAAVSEEMPPLEGDDDTSRMEEVD 607
>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 3 [Canis familiaris].
Length = 543
Score = 402 bits (1033), Expect = e-112
Identities = 206/224 (91%), Positives = 207/224 (92%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 320 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 379
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 380 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 439
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSS
Sbjct: 440 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSS 499
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPL 672
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAV+EEMPPL
Sbjct: 500 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVSEEMPPL 543
>ref|XP_857093.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 2 [Canis familiaris].
Length = 509
Score = 402 bits (1033), Expect = e-112
Identities = 206/224 (91%), Positives = 207/224 (92%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 286 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 345
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 346 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 405
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSS
Sbjct: 406 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSS 465
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPL 672
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAV+EEMPPL
Sbjct: 466 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVSEEMPPL 509
>ref|XP_866014.1| PREDICTED: similar to heat shock protein HSP 90-beta isoform 4
[Canis familiaris].
Length = 503
Score = 362 bits (928), Expect = e-100
Identities = 177/226 (78%), Positives = 198/226 (87%)
Frame = +1
Query: 34 FVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXXXXXXXXXXXXX 213
+V +RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 278 YVRLVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKA 337
Query: 214 XFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMG 393
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMKAQALRDNSTMG
Sbjct: 338 KFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMG 397
Query: 394 YMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHAN 573
YM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSGFSLEDPQTH+N
Sbjct: 398 YMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSN 457
Query: 574 RIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
RIYRMIKLGLGIDED+ A++ SAAV +E+PPLEGD+D SRMEEVD
Sbjct: 458 RIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLEGDEDASRMEEVD 503
>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
familiaris].
Length = 636
Score = 323 bits (827), Expect = 3e-88
Identities = 159/202 (78%), Positives = 178/202 (88%)
Frame = +1
Query: 106 QQLKEFEGKTLVSVTKEGLELPXXXXXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSN 285
+ LKEF+GK+LVSVTKEGLELP FENLCK+MK+IL+KKVEKV +SN
Sbjct: 435 KNLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISN 494
Query: 286 RLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKA 465
RLV+SPCCIVTSTYGWTANMERIMKAQALRDNSTMGYM AKKHLEINPDH I+ETLRQKA
Sbjct: 495 RLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKA 554
Query: 466 EADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSA 645
EADKNDK+VKDLV+LL+ETALLSSGFSLEDPQTH+NRIYRMIKLGLGIDED+ A++ SA
Sbjct: 555 EADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSA 614
Query: 646 AVTEEMPPLEGDDDTSRMEEVD 711
AV +E+PPLEGD+D SRMEEVD
Sbjct: 615 AVPDEIPPLEGDEDASRMEEVD 636
>ref|XP_850113.1| PREDICTED: similar to heat shock protein 1, beta [Canis
familiaris].
Length = 460
Score = 306 bits (784), Expect(2) = 4e-85
Identities = 159/229 (69%), Positives = 182/229 (79%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G+ +QVANSAFVE++RK G E QLKEF+GK+LVSVTKEGLELP
Sbjct: 218 GKCKEQVANSAFVEQVRKWGFE--------------QLKEFDGKSLVSVTKEGLELPEDE 263
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMK
Sbjct: 264 EEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMK 323
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQAL DNST+GYM AK HLEINP H I+ETLRQKAEADKNDK+VKDLV+LL ETALLSSG
Sbjct: 324 AQALWDNSTVGYMMAKNHLEINPGHPIVETLRQKAEADKNDKAVKDLVVLLLETALLSSG 383
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDD 687
FSLE+PQTH+NRIY IKLGLGIDED TA++ SAAV +E+ PLEGD++
Sbjct: 384 FSLENPQTHSNRIYSTIKLGLGIDEDQVTAEEPSAAVPDEILPLEGDEN 432
Score = 28.5 bits (62), Expect(2) = 4e-85
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 668 PWKGTTTRPAWRKSIRLRLRLACPL 742
P +G P+W+KSI L+ CP+
Sbjct: 426 PLEGDENAPSWKKSINFSLQTLCPV 450
>ref|XP_854919.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
(Tumor specific transplantation 84 kDa antigen) (TSTA)
[Canis familiaris].
Length = 206
Score = 299 bits (766), Expect = 4e-81
Identities = 147/186 (79%), Positives = 163/186 (87%)
Frame = +1
Query: 154 EGLELPXXXXXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGW 333
EGLELP FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGW
Sbjct: 21 EGLELPEDEEEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGW 80
Query: 334 TANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILL 513
TANMERIMKAQALRDNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL
Sbjct: 81 TANMERIMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLL 140
Query: 514 YETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTS 693
+ETALLSSGFSLEDPQTH+NRIYRMIKLGLGIDED+ A++ SAAV +E+PPLEGD+D S
Sbjct: 141 FETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLEGDEDAS 200
Query: 694 RMEEVD 711
RMEEVD
Sbjct: 201 RMEEVD 206
>ref|XP_866031.1| PREDICTED: similar to heat shock protein 1, beta isoform 5 [Canis
familiaris].
Length = 480
Score = 293 bits (750), Expect = 3e-79
Identities = 156/232 (67%), Positives = 175/232 (75%)
Frame = +1
Query: 16 QVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXXXXXXX 195
+V V++LRK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 269 KVIRKNIVKKLRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDEEEK-- 326
Query: 196 XXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALR 375
K + E K + R S STYGWTANMERIMKAQALR
Sbjct: 327 ---------------KKMEESKAKDTQGRER---SRLHAGISTYGWTANMERIMKAQALR 368
Query: 376 DNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLED 555
DNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSGFSLED
Sbjct: 369 DNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLED 428
Query: 556 PQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
PQTH+NRIYRMIKLGLGIDED+ A++ SAAV +E+PPLEGD+D SRMEEVD
Sbjct: 429 PQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLEGDEDASRMEEVD 480
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,831,121
Number of extensions: 1143967
Number of successful extensions: 3689
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3674
Number of HSP's successfully gapped: 20
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo... 431 e-121
Alignment gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H... 431 e-121
Alignment gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens]. 381 e-106
Alignment gi|NP_003290.1| endoplasmin precursor [Homo sapiens]. 187 2e-47
Alignment gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur... 60 5e-09
>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
Length = 732
Score = 431 bits (1108), Expect = e-121
Identities = 220/237 (92%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 496 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 555
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 556 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 615
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 616 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 675
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADD+SAAVTEEMPPLEGDDDTSRMEEVD
Sbjct: 676 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 732
>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
Length = 854
Score = 431 bits (1108), Expect = e-121
Identities = 220/237 (92%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 618 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 677
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 678 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 737
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 738 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 797
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADD+SAAVTEEMPPLEGDDDTSRMEEVD
Sbjct: 798 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 854
>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
Length = 724
Score = 381 bits (979), Expect = e-106
Identities = 187/237 (78%), Positives = 210/237 (88%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GE+ +QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 488 GESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDE 547
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMK
Sbjct: 548 EEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMK 607
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSG
Sbjct: 608 AQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSG 667
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTH+NRIYRMIKLGLGIDED+ A++ +AAV +E+PPLEGD+D SRMEEVD
Sbjct: 668 FSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASRMEEVD 724
>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
Length = 803
Score = 187 bits (476), Expect = 2e-47
Identities = 103/241 (42%), Positives = 140/241 (58%), Gaps = 4/241 (1%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G + + +S FVERL K G EVIY+ EP+DEYC+Q L EF+GK +V KEG++
Sbjct: 543 GSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESE 602
Query: 181 XXXXXXXXXXXXFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 357
FE L MKD L+ K+EK VVS RL SPC +V S YGW+ NMERIM
Sbjct: 603 KTKESREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIM 662
Query: 358 KAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETAL 528
KAQA +D ST Y + KK EINP H +I + ++ + D++DK+V DL ++L+ETA
Sbjct: 663 KAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRIKEDEDDKTVLDLAVVLFETAT 722
Query: 529 LSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEV 708
L SG+ L D + + +RI RM++L L ID D ++ E D + EE+
Sbjct: 723 LRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKVEEEPEEEPEETAEDTTEDTEQDEDEEM 782
Query: 709 D 711
D
Sbjct: 783 D 783
>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
Length = 704
Score = 60.1 bits (144), Expect = 5e-09
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 25 NSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGL-----ELPXXXXXX 189
+S + E ++K EV++ E DE + L+EF+ K L+SV + + E
Sbjct: 510 HSPYYEAMKKKDTEVLFCFEQFDELTLLHLREFDKKKLISVETDIVVDHYKEEKFEDRSP 569
Query: 190 XXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQA 369
E L M+++L +V V V+ RL T P + G + R+ +
Sbjct: 570 AAECLSEKETEELMAWMRNVLGSRVTNVKVTLRLDTHPAMVTVLEMGAARHFLRMQQLAK 629
Query: 370 LRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSL 549
++ + LEINP H++I+ L Q ++ + LV +YE A++++G +
Sbjct: 630 TQEERAQ---LLQPTLEINPRHALIKKLNQLRASEPGLAQL--LVDQIYENAMIAAGL-V 683
Query: 550 EDPQTHANRIYRMI 591
+DP+ R+ ++
Sbjct: 684 DDPRAMVGRLNELL 697
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,004,409
Number of extensions: 1129562
Number of successful extensions: 3496
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus]. 429 e-120
Alignment gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus]. 384 e-107
Alignment gi|NP_035761.1| endoplasmin [Mus musculus]. 185 6e-47
Alignment gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur... 57 3e-08
>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
Length = 733
Score = 429 bits (1104), Expect = e-120
Identities = 219/237 (92%), Positives = 220/237 (92%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 497 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 556
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 557 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 616
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 617 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 676
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPT DD+SAAVTEEMPPLEGDDDTSRMEEVD
Sbjct: 677 FSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLEGDDDTSRMEEVD 733
>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
Length = 724
Score = 384 bits (987), Expect = e-107
Identities = 189/237 (79%), Positives = 211/237 (89%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GE+ +QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 488 GESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDE 547
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMK
Sbjct: 548 EEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMK 607
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSG
Sbjct: 608 AQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSG 667
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTH+NRIYRMIKLGLGIDED+ TA++ SAAV +E+PPLEGD+D SRMEEVD
Sbjct: 668 FSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLEGDEDASRMEEVD 724
>ref|NP_035761.1| endoplasmin [Mus musculus].
Length = 802
Score = 185 bits (470), Expect = 6e-47
Identities = 107/239 (44%), Positives = 142/239 (59%), Gaps = 4/239 (1%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G + + +S FVERL K G EVIY+ EP+DEYC+Q L EF+GK +V KEG++
Sbjct: 543 GSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESE 602
Query: 181 XXXXXXXXXXXXFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 357
FE L MKD L+ K+EK VVS RL SPC +V S YGW+ NMERIM
Sbjct: 603 KTKESREATEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIM 662
Query: 358 KAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETAL 528
KAQA +D ST Y + KK EINP H +I + ++ + D++DK+V DL ++L+ETA
Sbjct: 663 KAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRIKEDEDDKTVMDLAVVLFETAT 722
Query: 529 LSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEE 705
L SG+ L D + + +RI RM++L L ID + A V EE P E +DTS E
Sbjct: 723 LRSGYLLPDTKAYGDRIERMLRLSLNIDPE--------AQVEEE--PEEEPEDTSEDAE 771
>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
Length = 706
Score = 57.0 bits (136), Expect = 3e-08
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 5/190 (2%)
Frame = +1
Query: 25 NSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGL-----ELPXXXXXX 189
+S + E +++ EV++ E DE + L+EF+ K L+SV + + E
Sbjct: 512 HSPYYEAMKQKHTEVLFCYEQFDELTLLHLREFDKKKLISVETDIVVDHYKEEKFEDTSP 571
Query: 190 XXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQA 369
E+L M++ L +V V V+ RL T P + G + R+ +
Sbjct: 572 ADERLSEKETEDLMAWMRNALGSRVTNVKVTFRLDTHPAMVTVLEMGAARHFLRMQQLAK 631
Query: 370 LRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSL 549
++ + LEINP H++I+ L Q E++ + + LV +YE A++++G +
Sbjct: 632 TQEERAQ---LLQPTLEINPRHTLIKKLCQLRESE--PELAQLLVDQIYENAMIAAGL-V 685
Query: 550 EDPQTHANRI 579
+DP+ R+
Sbjct: 686 DDPRAMVGRL 695
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,092,985
Number of extensions: 959933
Number of successful extensions: 3080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3073
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa]. 432 e-121
Alignment gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is... 384 e-107
Alignment gi|NP_999268.1| endoplasmin precursor [Sus scrofa]. 188 5e-48
Alignment gi|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa]. 188 5e-48
Alignment gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof... 62 8e-10
>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
Length = 733
Score = 432 bits (1111), Expect = e-121
Identities = 221/237 (93%), Positives = 221/237 (93%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GET DQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELP
Sbjct: 497 GETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDE 556
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK
Sbjct: 557 EEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 616
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG
Sbjct: 617 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 676
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD
Sbjct: 677 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 733
>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
Length = 724
Score = 384 bits (987), Expect = e-107
Identities = 189/237 (79%), Positives = 211/237 (89%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
GE+ +QVANSAFVER+RK G EV+YM EPIDEYCVQQLKEF+GK+LVSVTKEGLELP
Sbjct: 488 GESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELPEDE 547
Query: 181 XXXXXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMK 360
FENLCK+MK+IL+KKVEKV +SNRLV+SPCCIVTSTYGWTANMERIMK
Sbjct: 548 EEKKKMEESKAKFENLCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMK 607
Query: 361 AQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSG 540
AQALRDNSTMGYM AKKHLEINPDH I+ETLRQKAEADKNDK+VKDLV+LL+ETALLSSG
Sbjct: 608 AQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSG 667
Query: 541 FSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEVD 711
FSLEDPQTH+NRIYRMIKLGLGIDED+ TA++ SAAV +E+PPLEGD+D SRMEEVD
Sbjct: 668 FSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLEGDEDASRMEEVD 724
>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
Length = 804
Score = 188 bits (478), Expect = 5e-48
Identities = 105/241 (43%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G + + +S FVERL K G EVIY+ EP+DEYC+Q L EF+GK +V KEG++
Sbjct: 543 GSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESE 602
Query: 181 XXXXXXXXXXXXFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 357
FE L MKD L+ K+EK VVS RL SPC +V S YGW+ NMERIM
Sbjct: 603 KSKENREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIM 662
Query: 358 KAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETAL 528
KAQA +D ST Y + KK EINP H +I + ++ + D++DK+V DL ++L+ETA
Sbjct: 663 KAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRVKEDEDDKTVSDLAVVLFETAT 722
Query: 529 LSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEV 708
L SG+ L D + + +RI RM++L L ID D ++ EE P +D T E+
Sbjct: 723 LRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKVEEE-----PEEEPEETTEDTTEDTEQD 777
Query: 709 D 711
D
Sbjct: 778 D 778
>ref|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa].
Length = 492
Score = 188 bits (478), Expect = 5e-48
Identities = 105/241 (43%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Frame = +1
Query: 1 GETLDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPXXX 180
G + + +S FVERL K G EVIY+ EP+DEYC+Q L EF+GK +V KEG++
Sbjct: 231 GSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESE 290
Query: 181 XXXXXXXXXXXXFENLCKIMKD-ILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIM 357
FE L MKD L+ K+EK VVS RL SPC +V S YGW+ NMERIM
Sbjct: 291 KSKENREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIM 350
Query: 358 KAQAL---RDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETAL 528
KAQA +D ST Y + KK EINP H +I + ++ + D++DK+V DL ++L+ETA
Sbjct: 351 KAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRVKEDEDDKTVSDLAVVLFETAT 410
Query: 529 LSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEEMPPLEGDDDTSRMEEV 708
L SG+ L D + + +RI RM++L L ID D ++ EE P +D T E+
Sbjct: 411 LRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKVEEE-----PEEEPEETTEDTTEDTEQD 465
Query: 709 D 711
D
Sbjct: 466 D 466
>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
Length = 702
Score = 62.0 bits (149), Expect = 8e-10
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 5/194 (2%)
Frame = +1
Query: 25 NSAFVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGL-----ELPXXXXXX 189
+S + E +++ EV++ E DE + L+EF+ K L+SV + + E
Sbjct: 508 HSPYYEAMKQKNTEVLFCYEQFDELTLLHLREFDRKKLISVETDIVIDHYKEEKFEDSSP 567
Query: 190 XXXXXXXXXFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQA 369
E+L M++ L +V V V+ RL T P I G + R+ +
Sbjct: 568 AGDRLSEEEMEDLMAWMRNALGSRVTNVKVTLRLDTHPAMITVLEMGAARHFLRMQQLAK 627
Query: 370 LRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSL 549
++ + LEINP H++I+ L Q ++ + + LV +YE A++++G S
Sbjct: 628 TQEERAQ---LLQPTLEINPRHTLIKKLSQLRHSEPDLAQL--LVDQIYENAMITAGLS- 681
Query: 550 EDPQTHANRIYRMI 591
+DP+ +R+ R++
Sbjct: 682 DDPRPMVSRLNRLL 695
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,905,527
Number of extensions: 789805
Number of successful extensions: 2289
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2275
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002189
(1383 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1499 0.0
Sscrofa_Chr17 190 1e-45
Sscrofa_Chr11 80 4e-12
>Sscrofa_Chr07
|| Length = 134764511
Score = 1499 bits (756), Expect = 0.0
Identities = 763/764 (99%), Gaps = 1/764 (0%)
Strand = Plus / Plus
Query: 604 ggtattgatgaggacgaccccaccgccgacgacagcagcgctgctgtgacggaggagatg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760204 ggtattgatgaggacgaccccaccgccgacgacagcagcgctgctgtgacggaggagatg 129760263
Query: 664 ccacccctggaaggggacgacgacacgtcccgcatggaggaagtcgattaggctccgcct 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760264 ccacccctggaaggggacgacgacacgtcccgcatggaggaagtcgattaggctccgcct 129760323
Query: 724 gaggcttgcttgtcccctgttaaaacgctgtctgcattccctctgacgatatattttcaa 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760324 gaggcttgcttgtcccctgttaaaacgctgtctgcattccctctgacgatatattttcaa 129760383
Query: 784 gtattttatttttgttaacatttaaaggttgtatggcatgacagttccttaagggaaaat 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760384 gtattttatttttgttaacatttaaaggttgtatggcatgacagttccttaagggaaaat 129760443
Query: 844 aagattcctttgtactaagtgtgacactgtgacatttgagcactaaagccgagcttgtcc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760444 aagattcctttgtactaagtgtgacactgtgacatttgagcactaaagccgagcttgtcc 129760503
Query: 904 tttcctagttccagttggcttctttaacagacggccctcgtgctgtgaggtgtgtgtacc 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760504 tttcctagttccagttggcttctttaacagacggccctcgtgctgtgaggtgtgtgtacc 129760563
Query: 964 ctgatgttaacttcttggtctgtgttcagctctcaagcggattccttagttgaccacctt 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760564 ctgatgttaacttcttggtctgtgttcagctctcaagcggattccttagttgaccacctt 129760623
Query: 1024 ttgtcactgaagtgttgtggagtatatcttgatgtttaggagaaaaatacttgttcaagc 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760624 ttgtcactgaagtgttgtggagtatatcttgatgtttaggagaaaaatacttgttcaagc 129760683
Query: 1084 aacgagtagatttgggctctacctttgaaacctcccatcccctgtagctgttgactgcat 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760684 aacgagtagatttgggctctacctttgaaacctcccatcccctgtagctgttgactgcat 129760743
Query: 1144 gtatcagtcctctaggagttaggatgaaccccgttgatgggagtagctatccttagggct 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760744 gtatcagtcctctaggagttaggatgaaccccgttgatgggagtagctatccttagggct 129760803
Query: 1204 tgtttccaaagaaatgtaatgtttagggacccgaagtcaaaagcccacctaggcatgtgg 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760804 tgtttccaaagaaatgtaatgtttagggacccgaagtcaaaagcccacctaggcatgtgg 129760863
Query: 1264 taaagctgtttgagaagtaactctgcaagcgtcgtgagtggagatgtagcgccgaagtcg 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129760864 taaagctgtttgagaagtaactctgcaagcgtcgtgagtggagatgtagcgccgaagtcg 129760923
Query: 1324 cattctgcttccggagttgaaac-aatacagatgaattaaacag 1366
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 129760924 cattctgcttccggagttgaaacaaatacagatgaattaaacag 129760967
Score = 672 bits (339), Expect = 0.0
Identities = 339/339 (100%)
Strand = Plus / Plus
Query: 269 aggtggttgtgtcgaaccggttggtgacctcaccgtgctgcattgtcacaagcacatacg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759577 aggtggttgtgtcgaaccggttggtgacctcaccgtgctgcattgtcacaagcacatacg 129759636
Query: 329 gctggacagcaaacatggagagaatcatgaaggctcaagccctgagagacaactcgacaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759637 gctggacagcaaacatggagagaatcatgaaggctcaagccctgagagacaactcgacaa 129759696
Query: 389 tgggttacatggcagcaaagaagcacctggagataaatccagaccattccatcatcgaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759697 tgggttacatggcagcaaagaagcacctggagataaatccagaccattccatcatcgaga 129759756
Query: 449 ccctgaggcaaaaggcagaggcggacaagaacgacaagtccgtgaaggatctggtcatcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759757 ccctgaggcaaaaggcagaggcggacaagaacgacaagtccgtgaaggatctggtcatcc 129759816
Query: 509 tgctgtacgaaaccgctctgctgtcttctggcttcagcctggaagatccccagacgcacg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759817 tgctgtacgaaaccgctctgctgtcttctggcttcagcctggaagatccccagacgcacg 129759876
Query: 569 ccaacaggatctacaggatgatcaaacttggtcttggta 607
|||||||||||||||||||||||||||||||||||||||
Sbjct: 129759877 ccaacaggatctacaggatgatcaaacttggtcttggta 129759915
Score = 313 bits (158), Expect = 1e-82
Identities = 167/170 (98%)
Strand = Plus / Plus
Query: 1 ggtgagaccttggaccaggtggccaactcggccttcgtggagcgtctgcggaagcacggc 60
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 129759033 ggtgagaccaaggaccaggtggccaactcggccttcgtggaacgtctgcggaagcacggc 129759092
Query: 61 ctggaggtgatctacatgatcgagcccatcgatgagtactgtgtgcagcagctgaaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759093 ctggaggtgatctacatgatcgagcccatcgatgagtactgtgtgcagcagctgaaggag 129759152
Query: 121 tttgaggggaagaccttagtgtcagtcaccaaagagggcctggagctccc 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759153 tttgaggggaagaccttagtgtcagtcaccaaagagggcctggagctccc 129759202
Score = 139 bits (70), Expect = 5e-30
Identities = 244/302 (80%)
Strand = Plus / Plus
Query: 298 tcaccgtgctgcattgtcacaagcacatacggctggacagcaaacatggagagaatcatg 357
||||| || |||||||| || ||||| || ||||||||||| ||||||||| | ||||||
Sbjct: 45119137 tcaccctgttgcattgtgaccagcacctatggctggacagccaacatggagcgcatcatg 45119196
Query: 358 aaggctcaagccctgagagacaactcgacaatgggttacatggcagcaaagaagcacctg 417
|| ||||| || || | ||||||||||| ||||| |||||| || || |||||||||
Sbjct: 45119197 aaagctcaggcacttcgggacaactcgaccatgggctacatgatggccaaaaagcacctg 45119256
Query: 418 gagataaatccagaccattccatcatcgagaccctgaggcaaaaggcagaggcggacaag 477
||||| || || ||||| |||| | ||||| ||| | || ||||||||||||||||||
Sbjct: 45119257 gagatcaaccctgaccaccccattgtggagacgctgcgacagaaggcagaggcggacaag 45119316
Query: 478 aacgacaagtccgtgaaggatctggtcatcctgctgtacgaaaccgctctgctgtcttct 537
|| |||||| | || ||||| || || | ||||||| ||||| || ||||||||||||
Sbjct: 45119317 aatgacaaggctgtcaaggacctagtggtgctgctgtttgaaacggcactgctgtcttct 45119376
Query: 538 ggcttcagcctggaagatccccagacgcacgccaacaggatctacaggatgatcaaactt 597
|||||| ||||||||||||||||| || ||||| | |||||| | |||||||| |||
Sbjct: 45119377 ggcttctcgctggaagatccccagacccattccaaccgcatctaccgcatgatcaagctt 45119436
Query: 598 gg 599
||
Sbjct: 45119437 gg 45119438
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 217 tttgaaaacctctgcaagatcatgaaggacatcttggagaagaaagtcgaaaaggtg 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129759249 tttgaaaacctctgcaagatcatgaaggacatcttggagaagaaagtcgaaaaggtg 129759305
Score = 111 bits (56), Expect = 1e-21
Identities = 128/152 (84%)
Strand = Plus / Plus
Query: 16 caggtggccaactcggccttcgtggagcgtctgcggaagcacggcctggaggtgatctac 75
||||| |||||||| || || ||||||||| ||||||||| || | |||||| | |||
Sbjct: 45118317 caggttgccaactctgcgtttgtggagcgtgtgcggaagcggggtttcgaggtggtgtac 45118376
Query: 76 atgatcgagcccatcgatgagtactgtgtgcagcagctgaaggagtttgaggggaagacc 135
|||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |
Sbjct: 45118377 atgacagagcccatcgacgagtactgtgtgcaacagctcaaggagtttgatgggaagagc 45118436
Query: 136 ttagtgtcagtcaccaaagagggcctggagct 167
| || ||||| ||||| ||||||||||||||
Sbjct: 45118437 ctggtctcagttaccaaggagggcctggagct 45118468
>Sscrofa_Chr17
|| Length = 69701581
Score = 190 bits (96), Expect = 1e-45
Identities = 404/503 (80%), Gaps = 24/503 (4%)
Strand = Plus / Minus
Query: 835 agggaaaataagattcctttgtactaagtgtgacactgtgacatttgagcactaaagccg 894
|||||||||||||||||||| |||||||||||| | |||| | || |||||||| || |
Sbjct: 41647660 agggaaaataagattcctttctactaagtgtgaggcagtgatacttcagcactaatgcag 41647601
Query: 895 agcttgtcctttcctagttccagt-tggcttcttt-aacagacggccctcgtgctgtgag 952
|||||| ||| || |||||| |||||| ||| ||||||| | ||||||||| ||
Sbjct: 41647600 agcttgctcttctctggttccacactggcttatttcaacagactgtagtcgtgctgtaag 41647541
Query: 953 gtgtgtgtaccctgatgttaacttcttggtct---gtgttcagctctcaagcggattcct 1009
||||||||| |||||||||||||| |||||| |||||||||| || || ||||||||
Sbjct: 41647540 gtgtgtgtaacctgatgttaactttatggtctaaagtgttcagctatcgagtggattcct 41647481
Query: 1010 tagttgaccac--cttttgtcactgaagtgttgtggagtatatcttgatgtttaggagaa 1067
|||| ||||| |||||||||| |||| ||| ||||||||||||||||||||| || |
Sbjct: 41647480 tagtagaccaaatcttttgtcacagaagggttctggagtatatcttgatgtttaaaagga 41647421
Query: 1068 aaatacttgttcaagcaacgagtagatttgggctctacctttgaaacctcccatcccctg 1127
||||||||||||||||||| |||| ||| |||||| |||||| |||
Sbjct: 41647420 aaatacttgttcaagcaac---------------ctactttttaaaccttccatcctctg 41647376
Query: 1128 tagctgttgactgcatgtatcagtcctctaggagttaggatgaaccccgttgatgggagt 1187
||||| |||| ||||||||||||||||| | |||| |||||| || ||||||||||||
Sbjct: 41647375 tagctattgatggcatgtatcagtcctctggaagttcggatgagccaagttgatgggagt 41647316
Query: 1188 agctatccttagggcttg-tttccaaagaaatgtaatgtttagggacccgaagtcaaaag 1246
|||||| | |||||||| ||||||||| |||||| ||||| || |||| | | |||
Sbjct: 41647315 agctatacgcagggcttgttttccaaag-aatgtatggtttaaggtagcgaaattataag 41647257
Query: 1247 cccacctaggcatgtggtaaagctgtttgagaagtaactctgcaagcgtcgtgagtggag 1306
|| ||||||||||| |||||||||||||||||| ||||| || | |||||| ||||
Sbjct: 41647256 cctgcctaggcatgttgtaaagctgtttgagaaggaactcagcttgtttcgtgaatggaa 41647197
Query: 1307 atgtagcgccgaagtcgcattct 1329
|||||| || |||||| ||||||
Sbjct: 41647196 atgtagtgctgaagtcacattct 41647174
>Sscrofa_Chr11
|| Length = 87690581
Score = 79.8 bits (40), Expect = 4e-12
Identities = 121/142 (85%), Gaps = 7/142 (4%)
Strand = Plus / Plus
Query: 758 cattccctctgacgatatattttcaagtat---tttattttt-gttaacatttaaaggt- 812
|||||||||||| |||||||||||||||| ||||||||| | |||||||||||| |
Sbjct: 52165989 cattccctctgataatatattttcaagtatgtctttatttttggctaacatttaaagatc 52166048
Query: 813 tgtatggcatgacagttccttaag-ggaaaataagattcctttgtactaagtgtgacact 871
|||||||||||||| | |||||| |||| |||||| ||||| |||||||||||| |||
Sbjct: 52166049 tgtatggcatgacaactacttaagaggaagataagactccttgctactaagtgtgatact 52166108
Query: 872 gtgacatttga-gcactaaagc 892
|||| |||| | ||||||||||
Sbjct: 52166109 gtgatattttaggcactaaagc 52166130
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,454,434
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 11
Length of query: 1383
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1362
Effective length of database: 2,808,413,156
Effective search space: 3825058718472
Effective search space used: 3825058718472
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)