Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071298.1| 40S ribosomal protein S14 [Bos taurus]. 258 4e-69
Alignment gi|XP_002694606.1| PREDICTED: ribosomal protein S14-like [Bos t... 258 4e-69
Alignment gi|XP_584177.3| PREDICTED: ribosomal protein S14-like, partial ... 258 4e-69
>ref|NP_001071298.1| 40S ribosomal protein S14 [Bos taurus].
Length = 157
Score = 258 bits (658), Expect = 4e-69
Identities = 129/129 (100%), Positives = 129/129 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRI 453
RSGMKIGRI
Sbjct: 121 RSGMKIGRI 129
>ref|XP_002694606.1| PREDICTED: ribosomal protein S14-like [Bos taurus].
Length = 168
Score = 258 bits (658), Expect = 4e-69
Identities = 131/142 (92%), Positives = 136/142 (95%)
Frame = +1
Query: 61 AEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 240
AEMAPRKGKEKKEE+VISLGPQVAEGENVFGVCHIFA+FNDTFVHVTDLSGKETICRVTG
Sbjct: 16 AEMAPRKGKEKKEERVISLGPQVAEGENVFGVCHIFAAFNDTFVHVTDLSGKETICRVTG 75
Query: 241 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 420
GMKVKADRDESSPYAA+LAAQDV QR KELG+TALHIKL+A GGNRTKTPGPGAQSALRA
Sbjct: 76 GMKVKADRDESSPYAAVLAAQDVDQRGKELGMTALHIKLQARGGNRTKTPGPGAQSALRA 135
Query: 421 LARSGMKIGRIEDVTPIPSDST 486
L SGMKIGRIEDVTPI SDST
Sbjct: 136 LDCSGMKIGRIEDVTPILSDST 157
>ref|XP_584177.3| PREDICTED: ribosomal protein S14-like, partial [Bos taurus].
Length = 191
Score = 258 bits (658), Expect = 4e-69
Identities = 131/142 (92%), Positives = 136/142 (95%)
Frame = +1
Query: 61 AEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTG 240
AEMAPRKGKEKKEE+VISLGPQVAEGENVFGVCHIFA+FNDTFVHVTDLSGKETICRVTG
Sbjct: 39 AEMAPRKGKEKKEERVISLGPQVAEGENVFGVCHIFAAFNDTFVHVTDLSGKETICRVTG 98
Query: 241 GMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRA 420
GMKVKADRDESSPYAA+LAAQDV QR KELG+TALHIKL+A GGNRTKTPGPGAQSALRA
Sbjct: 99 GMKVKADRDESSPYAAVLAAQDVDQRGKELGMTALHIKLQARGGNRTKTPGPGAQSALRA 158
Query: 421 LARSGMKIGRIEDVTPIPSDST 486
L SGMKIGRIEDVTPI SDST
Sbjct: 159 LDCSGMKIGRIEDVTPILSDST 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,712,445
Number of extensions: 724792
Number of successful extensions: 4541
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4498
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 107
Effective length of database: 14,471,838
Effective search space: 1548486666
Effective search space used: 1548486666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867612.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_867602.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_536466.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
Alignment gi|XP_853559.1| PREDICTED: similar to ribosomal protein S14 iso... 280 9e-76
>ref|XP_867612.1| PREDICTED: similar to ribosomal protein S14 isoform 4 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_867602.1| PREDICTED: similar to ribosomal protein S14 isoform 3 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_536466.1| PREDICTED: similar to ribosomal protein S14 isoform 1 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_853559.1| PREDICTED: similar to ribosomal protein S14 isoform 2 [Canis
familiaris].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,558,707
Number of extensions: 717049
Number of successful extensions: 4650
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4572
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 106
Effective length of database: 15,607,576
Effective search space: 1654403056
Effective search space used: 1654403056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020242.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
Alignment gi|NP_001020241.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
Alignment gi|NP_005608.1| 40S ribosomal protein S14 [Homo sapiens]. 280 9e-76
>ref|NP_001020242.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_001020241.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_005608.1| 40S ribosomal protein S14 [Homo sapiens].
Length = 151
Score = 280 bits (715), Expect = 9e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,972,509
Number of extensions: 690138
Number of successful extensions: 4367
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4285
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 106
Effective length of database: 15,066,692
Effective search space: 1597069352
Effective search space used: 1597069352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065625.2| 40S ribosomal protein S14 [Mus musculus]. 280 8e-76
>ref|NP_065625.2| 40S ribosomal protein S14 [Mus musculus].
Length = 151
Score = 280 bits (715), Expect = 8e-76
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +1
Query: 67 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 246
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 247 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 426
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 427 RSGMKIGRIEDVTPIPSDST 486
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,234,400
Number of extensions: 561632
Number of successful extensions: 3353
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3293
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,734,103
Effective search space: 1375283124
Effective search space used: 1375283124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,022,886
Number of extensions: 520625
Number of successful extensions: 3056
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3007
Number of HSP's successfully gapped: 0
Length of query: 204
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 110
Effective length of database: 9,003,614
Effective search space: 990397540
Effective search space used: 990397540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002198
(612 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 178 2e-42
>Sscrofa_Chr08
|| Length = 148491826
Score = 178 bits (90), Expect = 2e-42
Identities = 356/441 (80%), Gaps = 4/441 (0%)
Strand = Plus / Minus
Query: 62 cagaaatggcaccgcgcaaggggaaggagaagaaggaggagcaggtcatcagcctcggcc 121
||||||||||||| | |||| ||| || |||| ||| || |||||||||||||| || |
Sbjct: 135039674 cagaaatggcacctcacaagaagaaagaaaagagggaagaacaggtcatcagccttggtc 135039615
Query: 122 cgcaggtggctgaaggggaaaacgtgttcggcgtgtgtcacatcttcgcgtctttcaatg 181
| ||||||||||||| |||||| | || || |||||||||| || | || | || ||
Sbjct: 135039614 ctcaggtggctgaagtggaaaatgcatttgg--tgtgtcacatattttcatcctccagtg 135039557
Query: 182 acactttcgtccatgtcaccgatctctcgggcaaggagaccatctgtcgcgtgacgggcg 241
||| ||| ||||||||||| || ||||| |||||||| ||||||||| | ||| | || |
Sbjct: 135039556 acaattttgtccatgtcactgacctctctggcaaggaaaccatctgttgtgtggctggtg 135039497
Query: 242 ggatgaaggtgaaggccgaccgggatgagtcctctccgtacgccgctatgctggctgccc 301
|||||||||||||||| || | |||||||| ||||| || | || ||| |||| |||
Sbjct: 135039496 ggatgaaggtgaaggctgatggagatgagtcatctccatatgttgccatgttggccaccc 135039437
Query: 302 aggacgtggcccagcgctgcaaggagctgggcatcactgccctccacatcaagctccggg 361
|||| || || ||| | |||||||| || | ||||||||||||||||||| ||| |||
Sbjct: 135039436 aggatgtagctcagaggcacaaggagcgggacctcactgccctccacatcaaactcaggg 135039377
Query: 362 ccacgggcgggaaccggaccaagacccctgggccaggtgcccagtcagccctcagagccc 421
| || || || || |||||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct: 135039376 caacaggaggacacaggaccaagacccctggactaggggcccagtgagccctcagagccc 135039317
Query: 422 tcgcccgctcgggaatgaagattgggcggattgaggacgtcacccccatcccctccgaca 481
|| | | ||| |||||||||| ||||| | |||||| |||| |||||||||||| ||||
Sbjct: 135039316 tcactcactcaggaatgaagactgggc-tactgaggatgtca-ccccatcccctctgaca 135039259
Query: 482 gcacccgcaggaaagggggtc 502
||||| ||||||| |||||||
Sbjct: 135039258 gcacctgcaggaaggggggtc 135039238
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 11,521,410
Number of extensions: 507
Number of successful extensions: 507
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 3
Length of query: 612
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 591
Effective length of database: 2,808,413,156
Effective search space: 1659772175196
Effective search space used: 1659772175196
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)